TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:3114417 original size:8 final size:8 Alignment explanation
Indices: 3114404--3114419 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3114394 CGGCCAATTG 3114404 CGGCAAAT 1 CGGCAAAT 3114412 CGGCAAAT 1 CGGCAAAT 3114420 TGCTGGTTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): CGGCAAAT Left flanking sequence: Indices 3113904 -- 3114403 AGCCGTCACAAATTAAAATTCTTCCTGGCATCATCAATTTCATTTATTTTTTTTCAATTTCTTTA ATGTGTGAATTGATCAAATTTTTCACCTACTCACAATTTTATCATTGACCAGTTAAAAAAGGGTG ATGGAGACATTTTAATAAGTTCACTTTCATTTTTCTTCCTTCTTATCAAATTAACCAATCAGTGA CCGTCTAGAGGGTGTCAAAAAGTTTCAAAATGTACAAAAAGAGAGTGAGCACAAACTTCAAACTT CTTCAAATGTGGTTGGAAAGGATTTTTTCAAAAAAAAAATTCAGAGGGCAAATTATTCTATATCT CTCTGAAAATCTTGTTTCAAAAGCCCGAAGTATGGGATCTTCCTTCTTGTGAAAAAATCTACAGT AACCCTACAGTACTCCTGTCTAAAATTTAAAGTAATCTAGTAGTAGCATCGGCGAAAGTAATTCA TTTGAGGGGTAATTACCGTTCGGCAAACTTTTTTTCGGCCAATTG Right flanking sequence: Indices 3114420 -- 3114919 TGCTGGTTTGCCGAATTTGCCGGAAATTTTCATTTTTCCAATTTGCCCATTTGCCGATTTGCCGG AAGTTTCTGAAATTATTTTTAATAAGACGGAAACATTTAAAACTGTGCCTTTTTGATTTTTTTTT TCATTTTCTTCAGATATTTTCATAAAACTTACTTACTTTCAAGTCGGTTTTTTTTGTCGGTTTTC CGGAAATTTTCATTTCCGGCAAACTGTCGATTTGCCGGAAATATTCATTTTCTGCAAATTGCCGA TTTTCCGGAAATTTTCATTTCCGGCAAACTGTCGATTTGCCGGAAATATTCATTTTCTGCAAATT GCCGATTTTCCGGAAATTTTCATTTCCGGCAAACTGTCGATTTGCCGGAAATATTCATTTTCTGC AAATTGCCGATTTTCCGGAAATTTTCATTTCCGGCAAACTGTCGATTTGCCGATTTGCCGATTTG CCGAATTTGCTGACTTTGTCGTTTGCCGGAAAATATCGTTTGCCG Found at i:3119202 original size:9 final size:9 Alignment explanation
Indices: 3119190--3119207 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3119180 CGCGCAGTAT 3119190 CAGCAGCAA 1 CAGCAGCAA 3119199 CAGCAGCAA 1 CAGCAGCAA 3119208 AAAAAAGAGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.33, G:0.22, T:0.00 Consensus pattern (9 bp): CAGCAGCAA Left flanking sequence: Indices 3118690 -- 3119189 CGCCCAAACATCCTGGTATACGGTAGACAAATTGCGTATAAGTACCACTTCTTCGGGCCGTGCTG GGAAGACTGTGACAAGCGGAAAAAATCACAATTATTCAGAGAAAAAGTATATGAGCGATAACGTA TTGTAAGAAAATTTGATTGTTTCATGAAAAAAGGGCAGTTTTTGTTAAATTTTACATTACGTTTT ATATTAAAATAATGAAATAAAATTTTTTTTACACAAGTTACAATGCTAAGGAATTTTACAAAAAC CGGTCTAAATAAAGATAAGATCAATGATTAAAAAACCAGAACAAATTCAACGAATTCAACGAACT TCACAGAAACAAAAAAAATCGTAGAAAATTGGGGGAAATTAAGAGCAGGCGTCACTAGTGAAAAT GTTGCATAACCTTCTTCTCACAGTGTCAATCGTCATCACACGCTCTTCACTATAGATTCTTGATA AGAGAAGGAGTGTGAGGCGGGAGAAATTGCCGAATCGCGCAGTAT Right flanking sequence: Indices 3119208 -- 3119707 AAAAAAGAGCGGCGGTGATAACCGTGTCACGAGGTTTCTCGAAACTGGTGAGTGAGAGAGCCGAT GGTCAGAAATAAAAAATGTCTAAGGAAAAAATCGAAAAGTCAGAACACACACCCAATCACTTCCT AGTTTCATTTGTCGAGGAGAGAGAGGGAAAAGAAAATACAAAAAATTTGTAGTGATCTGCATTTG GTAAATATGTATATTTCAAGTGATGTGATTGATATTCATTCACCGAATAAATTCTTGGAAATCGC TGAACAGACTAAAAACTGGGTAAAAAACTCTCTTAAGTTCAAAATGCACAGGAATGGTAGAAAAT TAATTTCCTTAGTTACAGTATTGCCTGTATATTTGACAGCTCATAACTCAGTTATCGTTCGTTCT AGTCAAAAATTGTCAACTAACACAATATTTGTTAGTTCTTTTTCTATCATTTTGTAGTAAATAAA ATATTGACATCTTTAAAATAAACCGAGATATAACGTTTCAAAGGT Found at i:3121102 original size:7 final size:7 Alignment explanation
Indices: 3121090--3121103 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3121080 TTTTTTTCTC 3121090 AATTTTT 1 AATTTTT 3121097 AATTTTT 1 AATTTTT 3121104 TTTTGAAAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): AATTTTT Left flanking sequence: Indices 3120590 -- 3121089 AACAAAAGCTGGAAAAATTGAAAACGAAATTTCACGTAGCGTCGTAGAAAAAGTGCAGTCTTGCA CTTTTTTATCGATGGAAAATTCTGATATAATTCCTGAATCAGCCGTAGTAAGACGTAAATAAATT ATAGATATCGAAAAAAATTGCTGAGAAGACACAAAACTATAGCTAGGAGGACGGTGGGTGCACAT GATTGGAAACACGGAATATTTCAGTGCAATTCATGTGGACTCGAGGGAGTTTTGAATTTCCGCCA GTGGGCTTGCCTACATGCGCGTCAAGCGAGAAAACTCGGCCACCGACTTTTTTTTTGAATCAGAA AACTTTGATCTTTGGAAACAATTTACGCAGACGATTTCAAAAAGTTAAGCTAAAATTATCCAAGA GGAGTACACGGGAATGTTTATCAATGGAGCGCATTAGCAAGCTAGCTAAACATAAAAAACTCTCG TGTACTCCCCGTGGATAACTTAGACTCAACATGTTTTTTTTTCTC Right flanking sequence: Indices 3121104 -- 3121603 TTTTGAAAGTAAAAATGATAAAAATTATAATATTTGATAATTTTTCAAATTTGATAAAAACCGGC AATTTGCCGATTTGCCAAATTTGTGGGCAAAAAAATTGCCGGCAACTTGTGGTTTAGTACATTTT TTTTGGAAATTTCAGAATTTCAATTTCAATCGACAAAATTGTATTCCCGGTAAATCTGATATCCG GCAAACCGGCAAGTTTCCGGAATTGAATATTGCTGGCAAATCGGCAAATTGCCGGAATTGAAATT TCCGGGGAAACAGGCAAATTGCCGTAATTGAAAATTTCCGCCGAATTTGTGGGCAAAAAAATTTG CCGAACCGCAATTGCCATCCCTGGTTTGATCTCCGAAAATGGCGGAAAACTTAAACGCGAGTTTC TACTGCCGGAAATTTCGTGTAACTTTTTTTCGGAGGTCGAGCGGACAAAATCCGGAAATCGGAAA AAATCGGAAAAAAACCCATCTCAAAGTCATTTTCCAGCCAAGTTT Found at i:3121572 original size:11 final size:10 Alignment explanation
Indices: 3121549--3121571 Score: 46 Period size: 10 Copynumber: 2.3 Consensus size: 10 3121539 CAAAATCCGG 3121549 AAATCGGAAA 1 AAATCGGAAA 3121559 AAATCGGAAA 1 AAATCGGAAA 3121569 AAA 1 AAA 3121572 ACCCATCTCA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.65, C:0.09, G:0.17, T:0.09 Consensus pattern (10 bp): AAATCGGAAA Left flanking sequence: Indices 3121049 -- 3121548 CTCCCCGTGGATAACTTAGACTCAACATGTTTTTTTTTCTCAATTTTTAATTTTTTTTTGAAAGT AAAAATGATAAAAATTATAATATTTGATAATTTTTCAAATTTGATAAAAACCGGCAATTTGCCGA TTTGCCAAATTTGTGGGCAAAAAAATTGCCGGCAACTTGTGGTTTAGTACATTTTTTTTGGAAAT TTCAGAATTTCAATTTCAATCGACAAAATTGTATTCCCGGTAAATCTGATATCCGGCAAACCGGC AAGTTTCCGGAATTGAATATTGCTGGCAAATCGGCAAATTGCCGGAATTGAAATTTCCGGGGAAA CAGGCAAATTGCCGTAATTGAAAATTTCCGCCGAATTTGTGGGCAAAAAAATTTGCCGAACCGCA ATTGCCATCCCTGGTTTGATCTCCGAAAATGGCGGAAAACTTAAACGCGAGTTTCTACTGCCGGA AATTTCGTGTAACTTTTTTTCGGAGGTCGAGCGGACAAAATCCGG Right flanking sequence: Indices 3121572 -- 3122071 ACCCATCTCAAAGTCATTTTCCAGCCAAGTTTTTCAAAGATAAGTGGCAAAAACTAACAGACAGA AAAATTTGTTCATAATTTTTATTTAAAAAAAATTTAATTTATTTATTATATAAATAAACCAAAAA ATCAAGACCTTGACCTAACCATTTTTTTTCCAGGTCACACTCCTAAATTTCATCACATTTTTTCA AGAATCTCTTGCTTGCATTAAAATGATTGACGCCTTGTCACTTTTAATTTTCGTGAGAGAGGAAG AGTTGAAAATTTTTTTATTTGGAAACGGAAGAGACAGATAAAAAAACGAGATGATGTATTTTTGT TCCGACCACCTCATTTGCTAATCTGCAAGGATAAAAAGAGAGTGATCTCATCAGAAAATTGAAAA CATACTCTATTCTATTCATAAGCTTCAGTTTTTTTTTCTCCGAGATGGGTGGCCATACATCATCA GAGAAACAAAAACAAAGTACAAAAGGGGGAACAAAAGTGAAAACA Found at i:3123238 original size:8 final size:8 Alignment explanation
Indices: 3123225--3123242 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 3123215 TTACGAAAAT 3123225 ACTTTGAA 1 ACTTTGAA 3123233 ACTTTGAA 1 ACTTTGAA 3123241 AC 1 AC 3123243 AAAATACGCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33 Consensus pattern (8 bp): ACTTTGAA Left flanking sequence: Indices 3122725 -- 3123224 ATTTTGACACCATAAAAGTTGTTTTTAACACTTTCCCCACTAGTCCACTTTTAAAGGGTCCAAAA CTACCCAATTTCGTAATGAGACGTTCTGAAAATTTTTGAAAAAAAAAGTTATGGCCGCTCAAAGT TTTGGAAAAAATTGTCGATTTTTGTCTAGCTAAAATCTTAAATTTTGGCAATTTTTCAGCGTCGT AGCGGTTGGAACTTAATTTTTATTCAATTTTCATTGTTTAATGCACGTCTTCAAAATTTATGACG ATACTGGGCAGTTGCAAAAATTTGAGATTTTAGCTAAAAATTGACCATTTTTTTCGAAATTTTTG AGCGGCCATAACTTTTTTTTGAAAAGTTGTCAGAACGTCTCATTACGAAATTCGGTAGTTTTGGG CCATTTTGGGTAAAAAAAAGCAAAGTCTCAAATTTCGGTACTCCAACTTAAGCGACTGCGTTATT TAAAGATGCGGAGTTTAATAACTATATGTGACATATTACGAAAAT Right flanking sequence: Indices 3123243 -- 3123742 AAAATACGCAAGAAGGGGCGAGTTAATTGCAAGTTTTGCAGATGTTACGCTGACCTAAAGACCAA ATAACACATGCACTTTAAAATTTTAAACAACATTTCTTTGTTTATTCGAAATACTCAAAATTACT CCACACGATAAGAAAAAACATTACTCTAAAAACAGAATGGAAAACTACCAAAAAAAAATGATATT AGGATATTTTAGCACTATAGAAATTAGTTTAAATATTTTCCCCACTAGCCGTACTCCGCCTGATT TTTTCACAATTTCAAGCAATGAAGAAAAAAAACAATAGAATGAAAATGTACCCCACGAGTCAAAA TCTCAAAATCTAAAAACACATGTGATTCTGATCTGATCTGAATAAATTTTCGGAAATTGTAGTAT TCTAGTATATTCGACATATTGGTAACTGCGTCACACTATGTATTTATTTTCAAATATATATATAT ATCCAACAAAAAACACATTATTTTTTATATGAATATTTGATTGGA Found at i:3124530 original size:9 final size:9 Alignment explanation
Indices: 3124516--3124535 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 3124506 TGGAGCAGTG 3124516 CGAATTTGC 1 CGAATTTGC 3124525 CGAATTTGC 1 CGAATTTGC 3124534 CG 1 CG 3124536 GAAAAGTGGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30 Consensus pattern (9 bp): CGAATTTGC Left flanking sequence: Indices 3124016 -- 3124515 TGAAAAAAAAAACATTTTAATGAGTTTGATTTATTCATATGAAACATGATAAAAGCTACAGTTAT AAATGAGAATTCCGGAAAAGTTTAAATTTTAGCTGCAATTTTATTGAAATTCTACACTACTATGC ATGTATATGCATTAAAATTTCAAAGCTGATCCTGCATAAAATATTGTGGGTATGTGAAGAAAATA CACAAAATTTGCACATTGATTTCACAAATAAATTTCTTAAATCTTTTAAAAATCGAGAAAAAATC CATTTGCTGAAAATTATACAACTTTTTTTAATGTTTGATTGATCTCTAAATAATTTATTTTTTAA GTTAAAATGTGAAAAGATGCTAAAAAAAACTCATGAAAAATTTCCCCAATGATCGAAAAAAAAAA TTTCAGCAATTTTTGAGCATCTTTACTTATGTATTTTTTAACATGAAACCGGCAATGCGGAAAAT CGGCAAATTGCCTGAATTAAAAATTTCCGGCAAATTGGAGCAGTG Right flanking sequence: Indices 3124536 -- 3125035 GAAAAGTGGCAATTTCTGAAAATTTCCGGTAAGTTGTGTTTTGCACTTTTTGCATTTTTTTTTTT TGGAGATTTCAGAATTTAAATTTAAACGGCAGAATTTTCATTGAATATACCTACATTTATTTCAA ATAGTAAGCAAATTCTATGAAAATATCTAAAGAAAACGGGAGAAAAAATTTCAAAAAAGCACAGT TTTAAGTGTTTCCGTCTTACAAAAAACTCCTCTAAAAACTTCCGGCAAATTGGCAAATCGGCAAT TTGCCAAAAATCAAAATTTCCGGCAAATCGGCAACTCGGCAAACCGGCAATTTGTCGATTCACCG AATTTGTGAAAAAAAATCCATTGCCGCAACATCTGATTCAACGCACGAAAAATGAAATAAATGTC ATTTTCGCAGGGATAAAAATACGAAAATAAAAGTGATTTTTCGGTGTCTAAGAAGTGCGATTTGA AGTTTGTTTTCGTTTTTTTCTCGAAAAAGTATATAAATAATAGTA Found at i:3125256 original size:8 final size:8 Alignment explanation
Indices: 3125245--3125260 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3125235 TTTTCAAAGA 3125245 AAATTAGG 1 AAATTAGG 3125253 AAATTAGG 1 AAATTAGG 3125261 TTAGACACAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25 Consensus pattern (8 bp): AAATTAGG Left flanking sequence: Indices 3124745 -- 3125244 TCTTACAAAAAACTCCTCTAAAAACTTCCGGCAAATTGGCAAATCGGCAATTTGCCAAAAATCAA AATTTCCGGCAAATCGGCAACTCGGCAAACCGGCAATTTGTCGATTCACCGAATTTGTGAAAAAA AATCCATTGCCGCAACATCTGATTCAACGCACGAAAAATGAAATAAATGTCATTTTCGCAGGGAT AAAAATACGAAAATAAAAGTGATTTTTCGGTGTCTAAGAAGTGCGATTTGAAGTTTGTTTTCGTT TTTTTCTCGAAAAAGTATATAAATAATAGTATCGTTCCATCCAACGGCGACGGGCGACATTTGAA ATACGTGGGAGAACGGAAATCTGAGATGAGTCGAACGTACTTTTTGACAGAGAGAAGAAGCATGA AAATACTATTGGGAAAAAAAAATGTAAATAAAATAAATATGGGAGTGAAGGTCAAACAAAGAAAA GTGAGGAGGAGGAGGAAATTAAATGAATTTTTGATTTTTCAAAGA Right flanking sequence: Indices 3125261 -- 3125760 TTAGACACAACAAGAATCAAAGACAATTTCTGAATTTTTGGTGAATCATTTTTTAAGGAAAATAG GAATTTTATTATAGGTGACCTAATTATGACATCACTGGATGGCCTGGAAAAGTTGGCCGCAATAA ACGTCGCCTAGAAACCTCTGTTGGCTCATATGGAAACAGGGGTGGGTGGCGATTGCCGTTCGGCA AATTCGGCAATTGGGCAAATTGCCAGTTTGCCGATTTGCCGCTTTGCAGGATATCAATTTGCCGG AAGTTTTTAGAGGGTTTTTCATAAGACGGAAACACTTAAAACTGTGCCTTTTTGAAATTTTTTTC CCGTTTTCATAGAATTGCCTTACTTTTCAAAATAGATGTAGGAATATTCATAGGATGCGTACGAT TTTGCCGATTGAAATTTAAATTCTGAAATTTCCAACAAAGAAATTTGCCGGAAAATTTTCAATTC CGACAATTTGCCGATTTGCCGGAAAATTTTCAATTCCAGCAATTC Found at i:3125734 original size:8 final size:8 Alignment explanation
Indices: 3125721--3125736 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3125711 AATTCCGACA 3125721 ATTTGCCG 1 ATTTGCCG 3125729 ATTTGCCG 1 ATTTGCCG 3125737 GAAAATTTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38 Consensus pattern (8 bp): ATTTGCCG Left flanking sequence: Indices 3125221 -- 3125720 AATGAATTTTTGATTTTTCAAAGAAAATTAGGAAATTAGGTTAGACACAACAAGAATCAAAGACA ATTTCTGAATTTTTGGTGAATCATTTTTTAAGGAAAATAGGAATTTTATTATAGGTGACCTAATT ATGACATCACTGGATGGCCTGGAAAAGTTGGCCGCAATAAACGTCGCCTAGAAACCTCTGTTGGC TCATATGGAAACAGGGGTGGGTGGCGATTGCCGTTCGGCAAATTCGGCAATTGGGCAAATTGCCA GTTTGCCGATTTGCCGCTTTGCAGGATATCAATTTGCCGGAAGTTTTTAGAGGGTTTTTCATAAG ACGGAAACACTTAAAACTGTGCCTTTTTGAAATTTTTTTCCCGTTTTCATAGAATTGCCTTACTT TTCAAAATAGATGTAGGAATATTCATAGGATGCGTACGATTTTGCCGATTGAAATTTAAATTCTG AAATTTCCAACAAAGAAATTTGCCGGAAAATTTTCAATTCCGACA Right flanking sequence: Indices 3125737 -- 3126236 GAAAATTTTCAATTCCAGCAATTCGCTTATTTGCCGGAAATTTTCAATTCCAGCAATTTGCCGGA AGTTTTAAATTCTGGAAATTTGCCGGTTTGCCGGAAATTTTCAATTCCGGCAATTTTCCGGTTTG CCGGAAATTTTCAATTCCGGCAATTTTCCGGTTTGCCGGAAATTTTCAATTCCGCAATTTGCTGA TTTGCCGGAAATTTTCATTTTCGGAAATGTTCAATTCCGGCAATTTGCCGATTTGCCAGAAATTT CAATTCCGGCATTTTGACAATTTGCCGGAAAAATAGTTTGCCTCCAGAAGATCAGTGACGTCATT TGCAGTTTTATGAATAGTTATAGTAGAGAATATATATATATATATATACATTTTTAGCGTACAAA CAGCCTAGAATCCCCCGCTGTCAAACATGAAAGAATTATGACGTCACTAACTAGCTTTGAATGAA AAAACGTAACCTAAAAATTTCCTGAGGAATTTATTTTTCGACTTA Found at i:3125833 original size:8 final size:8 Alignment explanation
Indices: 3125820--3125835 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3125810 ATTCTGGAAA 3125820 TTTGCCGG 1 TTTGCCGG 3125828 TTTGCCGG 1 TTTGCCGG 3125836 AAATTTTCAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.25, G:0.38, T:0.38 Consensus pattern (8 bp): TTTGCCGG Left flanking sequence: Indices 3125320 -- 3125819 AAATAGGAATTTTATTATAGGTGACCTAATTATGACATCACTGGATGGCCTGGAAAAGTTGGCCG CAATAAACGTCGCCTAGAAACCTCTGTTGGCTCATATGGAAACAGGGGTGGGTGGCGATTGCCGT TCGGCAAATTCGGCAATTGGGCAAATTGCCAGTTTGCCGATTTGCCGCTTTGCAGGATATCAATT TGCCGGAAGTTTTTAGAGGGTTTTTCATAAGACGGAAACACTTAAAACTGTGCCTTTTTGAAATT TTTTTCCCGTTTTCATAGAATTGCCTTACTTTTCAAAATAGATGTAGGAATATTCATAGGATGCG TACGATTTTGCCGATTGAAATTTAAATTCTGAAATTTCCAACAAAGAAATTTGCCGGAAAATTTT CAATTCCGACAATTTGCCGATTTGCCGGAAAATTTTCAATTCCAGCAATTCGCTTATTTGCCGGA AATTTTCAATTCCAGCAATTTGCCGGAAGTTTTAAATTCTGGAAA Right flanking sequence: Indices 3125836 -- 3126335 AAATTTTCAATTCCGGCAATTTTCCGGTTTGCCGGAAATTTTCAATTCCGGCAATTTTCCGGTTT GCCGGAAATTTTCAATTCCGCAATTTGCTGATTTGCCGGAAATTTTCATTTTCGGAAATGTTCAA TTCCGGCAATTTGCCGATTTGCCAGAAATTTCAATTCCGGCATTTTGACAATTTGCCGGAAAAAT AGTTTGCCTCCAGAAGATCAGTGACGTCATTTGCAGTTTTATGAATAGTTATAGTAGAGAATATA TATATATATATATACATTTTTAGCGTACAAACAGCCTAGAATCCCCCGCTGTCAAACATGAAAGA ATTATGACGTCACTAACTAGCTTTGAATGAAAAAACGTAACCTAAAAATTTCCTGAGGAATTTAT TTTTCGACTTACAAAAAAATGAGGCCTAGAAACCTTTCACTAAAGTTTTCACTAAAATTAAATAA TTAATGGCGTCACACGTGGCCTAGAAGCCTCATCTGCAGTATTTG Found at i:3127070 original size:8 final size:8 Alignment explanation
Indices: 3127057--3127073 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 3127047 TATCGTTCAT 3127057 GATTATGA 1 GATTATGA 3127065 GATTATGA 1 GATTATGA 3127073 G 1 G 3127074 CAAAACAAAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35 Consensus pattern (8 bp): GATTATGA Left flanking sequence: Indices 3126557 -- 3127056 AAATATGTCTCATACATTTACAAGTAGCAGAAGAAGAGAGGGGCCTGTGACGATCGGTTTTTTAG AGAAAAAAATGACATGAAAATAAAATGTTCATATATGATGTTTATCGAAAAACCATAGTGACTAA AAGTACGCTGGGACCAGTTTTTTTTTTCCAGTGTAACTTTATAGAATGTACGAAACTTGAAAATT GGAAAAAAGAGGAGAGGAACTTTGACCTGGAAAATACATTTTTAAAGATTGGTAAAAGAAAATGC CTACGTCTATCTAGATGCCTTCCTCTCTGGCTATGCCTACCTACTTGCCTTCTTGTTGGCATACA CCTGCCTACGGGTCTTCATGTCAGCCCAGGCCTGCCTACGTGCCTTCAAGTTCGCCTACCCACAT CTACGTGCCTTCAAGGTAACCTACAAGACAGGCGCCTAGGCAGGCAGGCATGCAGGCAAGCAGGC AAGCGGTTCATGAAATATCGTTCATGATTATGAGATATCGTTCAT Right flanking sequence: Indices 3127074 -- 3127573 CAAAACAAACCTGAAATTCACAAAATAAAATTAATATTGAGTTTTTAACCAAAATTTACAGATTC ACATTTTCGATGAAAAAAAAACACATTTTTTAAATGCTCATAGAAGACGCAGCACAAGTCATAAG GAGGTTCAAATAGGGTTTCTTTAAATTTTTGGCCGTCGAAATTTTCATTTAATCTGTTTTTCATT TAAGCTTTGCGAAATTTTAGAATAATAAGAAGTATTGAAAATATTTTGAATTTAGGATTAAGTCG TTTTTGTGCTCATTGAGCAAAATTTAACATTTGAGAGTGGTGGCCGTGGAACGGAAAACTCTTCC ACCACCTTGTTGAATTTTACAACAAAAAAAAGGTTTTTTCCGACCGTATAATTTTTCTAAAACCT TTCCAGATTCAAAAATTCCAAATAAATTGAAAACATTTTAATTATCAATTTGGAAGTGCATATTT TACAATGTGCAAAAAAAATTTTCAATTTTTAATTTTTTTTTTGGA Found at i:3128080 original size:8 final size:8 Alignment explanation
Indices: 3128067--3128085 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 3128057 GTTTCGGAAG 3128067 AAAAAGTC 1 AAAAAGTC 3128075 AAAAAGTC 1 AAAAAGTC 3128083 AAA 1 AAA 3128086 GGGAAAATGA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11 Consensus pattern (8 bp): AAAAAGTC Left flanking sequence: Indices 3127567 -- 3128066 TTTTGGAAAAAATTATATTGAAAATACCAATAAAAACTAATTATTGTGCTGGTGAATTCCATGAA TTTTCAAAAAAAAAAAAACATTGAAAATTGATAATTCAAAATTCAAAATACCAAAAAATTCTCAA AGAAATTATTGAATATTTCAATATTTTTCCAGAAACTGGTTTAACTTTTTAAAAGCGAATACCTC AACGGGAGCTTATGGTGCATCGCGGCATGATGTATCGCGTACTAAATTTCAAAAAAGTGTTCGCA CTCATGTAGATCTTTGTATCCAAAAAAGATCACAATCAGAAAACTAAAAAAAACAAAGTGTTTCA GTTGATAAACGCTGCGTGACGCCAGGATAATCCGAAACGGATTAGAACAAGCAATGATTCTTGGT GCCAAAACATGCCTACCGTAATCTGAAAGAATGTCACCGAAAAATGGAAAAGTTTTATGCATCTT GTGACTTTTTCAAATGATAACACCTAATCTTTTTTGTTTCGGAAG Right flanking sequence: Indices 3128086 -- 3128585 GGGAAAATGAAGTTGAAGTATCAGAGTACTATTTGGTGAGAAATTGAGAAAATGTGTACTTTCCA GGGTAGGTAGGCACGCTTGCCTCTCTCTCTCTCTTGGCCTAACTGCAAAATTCGAAGCTTCTATT ATAGAATACGAATTTCTAACTGAAAAAATGACCGTGTAGTTATTTTAGAGTTTGTTTGAATTTGA GTTTTTGGCTTGTAATTTGGAAGTAGGTAGGCGTTAGGCAGGCAGAACAAAATATTAATTCAAAT ACCGTAAACATTTTGTGCATAGTATTGTATTATTTAACTTTGTATTACAAAAACAATTCTAATTA CGTTTAATTCAAGGACTCTGTCCAAAAACAAACCCGCAGGATGTCAGCCGCTGTAATTTTTCAAA AAATGTTATGAAGCGAAAAATGTAGAAAAAAAAGTCTATAGTTATGATATGAGATATGAGGCCCG CCAAAATCCAAGAATTAAAATTAAAAAAACCAAATTATAACCGTT Found at i:3128533 original size:7 final size:7 Alignment explanation
Indices: 3128521--3128535 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3128511 CTATAGTTAT 3128521 GATATGA 1 GATATGA 3128528 GATATGA 1 GATATGA 3128535 G 1 G 3128536 GCCCGCCAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27 Consensus pattern (7 bp): GATATGA Left flanking sequence: Indices 3128021 -- 3128520 TGTGACTTTTTCAAATGATAACACCTAATCTTTTTTGTTTCGGAAGAAAAAGTCAAAAAGTCAAA GGGAAAATGAAGTTGAAGTATCAGAGTACTATTTGGTGAGAAATTGAGAAAATGTGTACTTTCCA GGGTAGGTAGGCACGCTTGCCTCTCTCTCTCTCTTGGCCTAACTGCAAAATTCGAAGCTTCTATT ATAGAATACGAATTTCTAACTGAAAAAATGACCGTGTAGTTATTTTAGAGTTTGTTTGAATTTGA GTTTTTGGCTTGTAATTTGGAAGTAGGTAGGCGTTAGGCAGGCAGAACAAAATATTAATTCAAAT ACCGTAAACATTTTGTGCATAGTATTGTATTATTTAACTTTGTATTACAAAAACAATTCTAATTA CGTTTAATTCAAGGACTCTGTCCAAAAACAAACCCGCAGGATGTCAGCCGCTGTAATTTTTCAAA AAATGTTATGAAGCGAAAAATGTAGAAAAAAAAGTCTATAGTTAT Right flanking sequence: Indices 3128536 -- 3129035 GCCCGCCAAAATCCAAGAATTAAAATTAAAAAAACCAAATTATAACCGTTTTAATAGTAAGTCAT AGAGCTTATATGCATACTTTTTTTAAAACTCACTCATGTGTACTATTTTAACATCACGAAACATT TTCTGAAACATTTTCTCGACACACTTGAATGACTAGTAAAAAGTAAAAATAAAAAATTATCTTGA ATTTCCAAACTTAAATAGTTTTTCGTTCATTTTTTCGACAAAGTTCAGTGATTCCACTACGAACT TGATCTACAGAAACTACAGGGAAAACTATTTTCATAGAAGCCACGTCACTTTAATTATTTAATTC AATGCTTTCCCTGCAGTTCTTGCAGATCAAGTTCGTCGAGACTTTGCAATTTCAAAAAAAAACTA CCTATTTGCTTTATTTAGAAATGTTTTTATCTACCAATTGTCTTTGAGCAACATACCCGTCAGGT GTCGGCTGCTATAATTATTTAGGGAGAGGTTTGAAAAATGTGTGC Found at i:3131365 original size:10 final size:10 Alignment explanation
Indices: 3131352--3131371 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 3131342 TTTTTCAAGA 3131352 CTTTTTTTTT 1 CTTTTTTTTT 3131362 CTTTTTTTTT 1 CTTTTTTTTT 3131372 GAAATAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90 Consensus pattern (10 bp): CTTTTTTTTT Left flanking sequence: Indices 3130852 -- 3131351 ATCACTTATTATTATTCCCTCTACGTGTGCTGTTTGATACCGACGTGGGAACAAAGCGTCGGTGA ATTCATTGTGTAGTGTGCCGAGAATTTTAAAATGTTAGTTAATGACGAATTTGATCATTGAAATT AGAAAAAGAACAGTCCTCTTGAATTATGTGGTTTATTGGAAAAGGAGGGGCAGCTCATGGTACAG CGAGCCAAAGCTCAAATTTTAGAAGCTTTATCCAAGGGGGCAGCATCTGAAGCTCCTTCTGATAA AGTTTCAGAAAAATTGAATGGCTAGTTTTCGAGATATTTTAATTTCCCTCCGCACACTCAAGGTG TGGGAGAAACATGGTGCATCGAGCTCAGAACGTCGGCTTTGAAGGTTCTTTGTGAGTCTTAGATC TTAACGAGGAGGGCAGAGTTTAGCCTCGTGCCCATTTTAGAAAAAAATTGTATCACTAAAGCGTT TGGAAAAAATGTGCAGTGAGGGTCAAAGTTTGCAATTTTTCAAGA Right flanking sequence: Indices 3131372 -- 3131871 GAAATAAAAAAAAATCAATTTTTTAAATTTTTAATTAAATTTTTTACAACAGTCCAGGGGAGCTG TAGAAGCTAAAAACTTGGAAAATTTAAAAAAAAATTGAATAACTAGCTTGCGAGAAATTTAAAAC TCTTTGTTTTGATCTTGGTGCATCAAGTCCAATTAGCCAACTTTAGGGGCGATTTGGAAGCTTAA AACTCAAATTTTCATGACGTATTCTAGAAGAAAAAGTTTTAAAGATTTTATTTGTGAAGTTTCAA AAAAATTCAATGACTAATTTTTGAGAAATTTGAACTTTTTAATACATTTTTAGGGTAGAGGAGAG TCATGGTGCATCGACTCAACAAAAAACTGTTTCAAAGAGATTTTTAAAACTGAAGCTTAAAATCA TAGTAGTTGTTCAAGGAGAAAAGCTAATTATACTGAGGTTCGAGTGGGGAAAAATGCTCATGGTG CATCGAGCCAAGCCAACAAATTAGAAGTTACAACGTCACTTTTTA Found at i:3131906 original size:8 final size:8 Alignment explanation
Indices: 3131893--3131908 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3131883 AACTTCCATT 3131893 CAAAAACC 1 CAAAAACC 3131901 CAAAAACC 1 CAAAAACC 3131909 TCCGTTTTAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00 Consensus pattern (8 bp): CAAAAACC Left flanking sequence: Indices 3131393 -- 3131892 TTTAAATTTTTAATTAAATTTTTTACAACAGTCCAGGGGAGCTGTAGAAGCTAAAAACTTGGAAA ATTTAAAAAAAAATTGAATAACTAGCTTGCGAGAAATTTAAAACTCTTTGTTTTGATCTTGGTGC ATCAAGTCCAATTAGCCAACTTTAGGGGCGATTTGGAAGCTTAAAACTCAAATTTTCATGACGTA TTCTAGAAGAAAAAGTTTTAAAGATTTTATTTGTGAAGTTTCAAAAAAATTCAATGACTAATTTT TGAGAAATTTGAACTTTTTAATACATTTTTAGGGTAGAGGAGAGTCATGGTGCATCGACTCAACA AAAAACTGTTTCAAAGAGATTTTTAAAACTGAAGCTTAAAATCATAGTAGTTGTTCAAGGAGAAA AGCTAATTATACTGAGGTTCGAGTGGGGAAAAATGCTCATGGTGCATCGAGCCAAGCCAACAAAT TAGAAGTTACAACGTCACTTTTTATTCACAAAAATAACTTCCATT Right flanking sequence: Indices 3131909 -- 3132408 TCCGTTTTATTGAAAACCAGGAACCAATTAAAGTTGCATGCGTTCTAGTCTATTTTTAGATTTGG AAAAGGTAACAAAAATGACAGAGCAAAGATTCTGAGAGAGCTATTTGACAGAAGTTTTAAAATTT CTATCCGAGCAACATGGTGCACGCGGGGCAAGCGGAAAGAGGTCTTGACACGACTAATTTTTGTG AATGTAAAAAGGTGTGCGCCTTTAAAGAGTACTGTAATTTCAAACTAGCTGTTTTTATGTATATT AAAAATACATATTTATTGAAAAATATCGAGAGAAAACTATGAAAAATCGATGAAAATTCCGGCAC AGGAATTTCAGTACCTTTCCAAAGGCGCACACCTTTTTGCGTTTTACGAAGATTTGTCGTGTCAA GACCCGTCAAGAAGCCGTTTGACATAGAAAATATGAATATTGCCAACGAAAACAAAATTAAACAT CTTTTAAGATTGACAGCAGAACAGAATCTCCGAAAAAACGAAGAA Found at i:3141479 original size:7 final size:7 Alignment explanation
Indices: 3141469--3141484 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 3141459 TTTAATATTC 3141469 AATCGAT 1 AATCGAT 3141476 AATCGAT 1 AATCGAT 3141483 AA 1 AA 3141485 ATAATTTATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25 Consensus pattern (7 bp): AATCGAT Left flanking sequence: Indices 3140969 -- 3141468 CGGTTTGATCTACAAAAAATGCGGGAATTTTTTGCACAAAAAAGTCACGTCAGCACATTCTTAAA CATACGAAATCAGTTGAAAACTCTGCGTCTTTTCTCCCGCATTTTTTGTAGATCTACGTAAATCA AGCCGAAATCTCTGACACCACGTGTTCACTAATAAATTAAAATTTGCGCGTCAATTGTGATGCAA GGCATCCGTAAAGCCAAACTGTGCAAGCATCACAGTTTACGTGAGATTTGTTTCTTAAAGAAATA AATTTTATTATTCTTCAAAAAATCCCTTTTTCCCTAGATTTTATATAGTTATTACGGGAACACGA AACCCTGAGACTGCGTACTGCGCAAAATATCTCGTAGCGAAAACTACAGTAATTTTTTAAATGAC TACTGTAGAGCTTGTGTCGATTTACGGGAACTCGATTTTCGTAATGACATTTCAATTTTTCTTCG TTCCCCGTATTATTTTTTTTCATTTTTTGTTAAATTTTAATATTC Right flanking sequence: Indices 3141485 -- 3141984 ATAATTTATTTTAATCCGTTCCGAAAATCGAGCCCGTAAATCGACCTACAGTAGTCATTCAAAGA GTTACTGTAGTTTTCGCTATGAGATACTTTGCGCGTCAAATATGCTGTGCAATACGCATTCTCAG ATTTTTTTTCCATAATATCTCAACTTTGCACATTTTTGCCTGACTTGACGCACAAATGCACGTGC CGAGACCCAACAAAAAACAAATATAAATAAAATAAATGTTCATTTATCGATTTTTCATACAGAAA CAGGACATTCCATCATTCCAAGAATATATCCCATATGTTTATTCATCGAATCAACAGCTTCTTTT CCACACCTATCAGATGTCAAATGTTTTGTGCATTCGAGCTCATCCTGATACATTTGACAATTTCC CGGGCGCCCTTTCTGCAAAAAATTACAGGAATATTTCCTTTTTTGCGCGTAAAGTATGGTGCTTC TTTTATGCGCACACAATGCACCACATTTTAAGCGTAACTTTTCAA Found at i:3144480 original size:7 final size:7 Alignment explanation
Indices: 3144470--3144485 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 3144460 AAAAAATAAA 3144470 AATGGAG 1 AATGGAG 3144477 AATGGAG 1 AATGGAG 3144484 AA 1 AA 3144486 ACAACAAATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.38, T:0.12 Consensus pattern (7 bp): AATGGAG Left flanking sequence: Indices 3143970 -- 3144469 GAAACGGATTAAATTGATTTATTTATCGATAGAATATTAAAACTAAGCAAATGATACGAGAAAAT TCGAAAAGAAATTCATTCCCGTAAATTGACACAAGCACTACTGTAGCCATTTAAAAAATTACTGT AGTTTTCGCTGCGAGATATTTTGAGCGTCGGATATGTTGTGCAGTACGCATTCTCAGAATTTTGT GTTCCCGTGATACATACAGGCCTGAAATTGTGAAATTTATTGATTTTTCAATGAAATAAAGCAGG AAACTAGCTAATTTAAAGTTTTAAAGCAATTAGCTCCTTTGATGTGACAAGTTTGCGTCCGTGAG CCCAATCTGTGAAAGCATCACAAATTACGCGCAAACATGATTTTTCTCGGTAAAATTGTTAAGTC CCACATTTTTTCAGCGACATTCCTGATTCTAAATTAGCGGGTAAACAGGAAAACAGTCTGATAAA TTCATGATTATAACGATAACAATAACGAACATTTAAAAAAATAAA Right flanking sequence: Indices 3144486 -- 3144985 ACAACAAATTGCAAAAAACAACAACTGATATCAGAATTAACGACGACCTCCTCGGAAACCGCCGC CTCGATCTCCACCTCGCCCACCACGGAATCCACCACCTCCGCCGCGTCCTCTGAATCCTCCTCGA TCGCCTCCACGGAAACCACCGCCACCACGTCCTCCGAATCCACCTCTAAATCCTCCATCACGATC TCCCGATCTTCCACGGAAGCCTCCACGATCTCCACCACGATCTGATGAACGTCCTCTGAAGCCTC CTCGGTCGCCACCACCTCCACGGAAGCCACCACGATCCACGGATCTTCCTCTAAAGCCACCTCCA TCACGATCGCGACCTCTGAAGCCTCCACGATCTCCGCCACGTCCGCGGAAGCCTCCACGATCTTC TCCTCTTCCTCTGAATCCACCTCGGAATCCCCCACGACTATCCTCATATCTTGGACGCTTCGAGG CTTCAGATGTACCCCATTCCTCGTTGGCACGCTTCAGATCTCTGC Found at i:3149347 original size:8 final size:8 Alignment explanation
Indices: 3149334--3149349 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3149324 AAAAAAACTG 3149334 AATTTTTC 1 AATTTTTC 3149342 AATTTTTC 1 AATTTTTC 3149350 TGTTGTTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62 Consensus pattern (8 bp): AATTTTTC Left flanking sequence: Indices 3148834 -- 3149333 ATTGCACTCAATGATTTGCCGGTTGTAAAGTTTTCAAGCGGAAGATATCGATATTTATCTCATAA ATATCGTGGAGAAATGCTCGGATTAATTGTGGAGCTTCTCGATGAAGATTCAATCGGTGATGTGA AGCTGGAGAAGGTAGAATAATCGCCATATCTTACGCGCAAGATATCCCGCCGGGAAGAGACGAAA TTACTGTATCCGTGTCGATTTACGAGCCGCGCTTGCATCATTATTCGAAATTAATCTTTTTTTTT GAATTTCGACCAGCAATTTTTCATTTTCAGATGTTTTTCGTATTTTTATTTTTAGATTTTTTCAG TATTTTCCGGAAAAAAAACTGAATTTTTCAATTTTCCGTTGTTTTTTCCCAACAAAAATCGTAAA AACCGAGAATTTCAGTTTTTCCGAGGTTTTGCTGTTAAAAAAATAGAATAAAAGACCCAGAAACT CCAGAAATTTCAGATTTTTTTCGGTATTTTCCGGAAAAAAAACTG Right flanking sequence: Indices 3149350 -- 3149849 TGTTGTTTTTTTCAAACAGAAATCGAAAAAAAATCCGGAAAAACACGAAAATTCAGTTTTTCGGA GTTTTTTCTCTGTGTTTCCAAAAAAAAAAAAACATTAAAAACCCCAAAAAAAAACACGAAAATTT CAGTTTTTCAGAGTTTTTTCAAAAAAAAATTTAAAAAATTTAATAAAGACTCACATTTCTGAGAA AAATTGAATTTCAAAATTTCTCAAAAATAAATTATTTATTGAAGAATCCATTAAAAATACGCAAA ACGACTGAAAATGAAAATTGCTGGTCGAAGTTAAAAAAAAATTAAATTCGAATAATGATTCGCGG CCCGTAAATCGACAAGAATACAGTAATTTCGTCTCTTCCCCGCGGGATATCTTGCGCGTAAGATA TGGCGATTTTTCTAGATTTTTCTACGTAATAACTTAAAAATCTGAAATTCTTCGATTTTCAGATT TCCCGAGCCTCTCTGCGCTCCAATCTTCCAGAAAACGTCCCCGAC Found at i:3149759 original size:10 final size:10 Alignment explanation
Indices: 3149744--3149763 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 3149734 AAGATATGGC 3149744 GATTTTTCTA 1 GATTTTTCTA 3149754 GATTTTTCTA 1 GATTTTTCTA 3149764 CGTAATAACT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60 Consensus pattern (10 bp): GATTTTTCTA Left flanking sequence: Indices 3149244 -- 3149743 CCGAGGTTTTGCTGTTAAAAAAATAGAATAAAAGACCCAGAAACTCCAGAAATTTCAGATTTTTT TCGGTATTTTCCGGAAAAAAAACTGAATTTTTCAATTTTTCTGTTGTTTTTTTCAAACAGAAATC GAAAAAAAATCCGGAAAAACACGAAAATTCAGTTTTTCGGAGTTTTTTCTCTGTGTTTCCAAAAA AAAAAAAACATTAAAAACCCCAAAAAAAAACACGAAAATTTCAGTTTTTCAGAGTTTTTTCAAAA AAAAATTTAAAAAATTTAATAAAGACTCACATTTCTGAGAAAAATTGAATTTCAAAATTTCTCAA AAATAAATTATTTATTGAAGAATCCATTAAAAATACGCAAAACGACTGAAAATGAAAATTGCTGG TCGAAGTTAAAAAAAAATTAAATTCGAATAATGATTCGCGGCCCGTAAATCGACAAGAATACAGT AATTTCGTCTCTTCCCCGCGGGATATCTTGCGCGTAAGATATGGC Right flanking sequence: Indices 3149764 -- 3150263 CGTAATAACTTAAAAATCTGAAATTCTTCGATTTTCAGATTTCCCGAGCCTCTCTGCGCTCCAAT CTTCCAGAAAACGTCCCCGACGAGGTAATTGACTGGTTCCTCAACTCCCGATGCGAACAGAATCC TGAGGATCCTTTCACCTACCGCCTGCCTGAGATCAACCTGATCCGCGACCTAACCGTCGTCATTC TCTATGGAACCCAAAAAATGCCTCTCCAACAGTTTCGTGAACTCCTGCACAAGATTCTACCATAT GGAGTCACTATGAACATTGCCCAGCTGGAAGGTGTCGCCGATATTTCTGATGCTCCATTCGGAAA AGTGATCTCATACCTATCACCGGAAGATCTTCCTGATACTATTAAAGAAAGAATGTTATATCTTT TTGAATATCGAAAACTCTGGTCTATGGAGCAACTTCGTCCATATTTCAAGGATGTTTACAAATCG AAAGTTGCTTTTGATAAGTATGTTGTTCAGAATTGTGATTATGCG Found at i:3150643 original size:7 final size:7 Alignment explanation
Indices: 3150631--3150644 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3150621 AAAATGTTAA 3150631 AAACAAT 1 AAACAAT 3150638 AAACAAT 1 AAACAAT 3150645 GAATGTTACT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): AAACAAT Left flanking sequence: Indices 3150131 -- 3150630 TAAAGAAAGAATGTTATATCTTTTTGAATATCGAAAACTCTGGTCTATGGAGCAACTTCGTCCAT ATTTCAAGGATGTTTACAAATCGAAAGTTGCTTTTGATAAGTATGTTGTTCAGAATTGTGATTAT GCGCTTTCTGAATCAAATGAGATGCTCTATTGTGGCGTGCGATAATTTTTCTTTCATATTTTGTA AATAAATGCTTTCAAGTACCTGATACCAAGTTTATTCAACTATTTTTCAGGCCACAAGAACTTTT AAGATTATTCTCAAAGAGCTGAAAGTGAACATTCAAGATGGAAAAAGAAGATAAGAATCTCATAG TGACAGAGATAAGTGCGTGACGAGGGAAAGAGAAAAATGATGGGAGAGGGACGATGAAAATAAAA AAGAAAAATTGTGCATATTGGACAAGAATGCAGCTGGTTGGGGAGAAATTGGCAAATAGAAATTG AAGAGTATTTGTGGAAACGGCTTAGACCGGCCTAGAAAATGTTAA Right flanking sequence: Indices 3150645 -- 3151144 GAATGTTACTTGGCTCAAAAAATGAGGGAAAAAATATCAGTTGGAGGAAAAAATGATAGAGATTT GGGCATAGGTGGGGGAGATAATTATCATAAGAGAGCAACCACAAGTTTTTGACACCAAACTTCTG CGTTTCAGTCTCGCTTTCTCGCGACAGATCGCATGAGAAGCTGATCGATCCTGGAAATGGTTTTG TTAGAATGGTGAGAAGGAGAAACTGAATAATACCTTTTTTCGGCTTCTCCATCCCACTCGTCGAA GAGCTTGACGTTTCTTCGTCTGCGGTGAATCAGGAGATGATGGAGGCCTGCTTCTTCTGTTTCGA ATCTTCCACTGCACGTGGAACAGGAGTATCTCGTCTTCTCGACGTGTTGTTTCATATGTTTGTAC CTGAAAAATCAATAATTGCTCGTTATGTTTTGGATGCAAACGTCTTACAGATTTGGAATTGTCAC ATTATCGGAGCACTTGCAGCATCTCACAGAGAACGCAGAGAAAAT Found at i:3152916 original size:8 final size:8 Alignment explanation
Indices: 3152903--3152918 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3152893 TTGGCATCAT 3152903 GTGATAAA 1 GTGATAAA 3152911 GTGATAAA 1 GTGATAAA 3152919 AACGTGCTAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25 Consensus pattern (8 bp): GTGATAAA Left flanking sequence: Indices 3152403 -- 3152902 GAATTGGCTGAGCCTTTGTCTCCAAATTTCAGAAATTGTGAGACACGTGGGAAAGAGCTCCGCCC TCAACGCGCGGTAAACATTGTCAGCCGCGGAACTCGCGAGATGTCGGGCAATGATATCACCTACC CTCGCGAACACCGTCTTCATCTGAAAGAATTTTTGAATTCAAGAGTATTTGCCGCACAATTTCTG CAATTCGGAAAAATCTTCAAAAAATACACTAGCAAACGCGAAATGCGACAGTAAGCTGCGTATAC TGCGCTTTCGATGCCGAGGAGACTGTGAGATCTGGAAATCGTAGATCCGGAAAGCGACCAAATCT TGAAAGCGTGGTGCCTCTTATTTTCGCGAAAAATTTAGAATTTTGGCGTTTTCCGTTGATTTTCT ACGTAGTTTACTGTCTTTAGTCAATAAATGTTTGTATTTTTACATGGAAAGAAATAATTTTCTAT TTTTTGTAGAGATTGGCCTCTCGGAGGATAGAAGTTTGGCATCAT Right flanking sequence: Indices 3152919 -- 3153418 AACGTGCTAAACGCAAATATTAGAGCTGCAAATTATCAGAAAATGGAAGAAATTCGAAAAATAAT TTATTCTCCAATGTAGAGCTAATTTTTGAGAATTTTAATATTAAATTGTCGATTTTTCAGTGAAT TCCATCTTCGAAGAGATCTCTTCTAACTCTCAACCTTCACATCATCACACGAACGATTCAATCAC TCTTCCATACGATGCAACAATCCAAAAAATCGCTGAAAAAGAGAAAAACCTCAGCAAATTGCTAA AAGAACTTTCAATTGTCGATTCTTCGCTGGAAGAGGAGAAAGCAAGCTTCGAGAAGACTCAATCT GCATTACTCAAGGAGAAGGGAAAAATTGAAAAGGATAAGCTCATGTTGAGAGAAGAAGCTCAGAA ACAGGCCAGCATGAATGCGGAGGTATAAGCGATGAAATTCCAAAAACACGGTCAGAGTCTATAGT CTTACCGCTACCAAAATCAGGAAAGCCAAAAGCTGCTCTTGGTTT Found at i:3153682 original size:7 final size:7 Alignment explanation
Indices: 3153672--3153687 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 3153662 TGAAAGGTTC 3153672 ATAGACT 1 ATAGACT 3153679 ATAGACT 1 ATAGACT 3153686 AT 1 AT 3153688 GTAAAATCTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31 Consensus pattern (7 bp): ATAGACT Left flanking sequence: Indices 3153172 -- 3153671 TTGCTAAAAGAACTTTCAATTGTCGATTCTTCGCTGGAAGAGGAGAAAGCAAGCTTCGAGAAGAC TCAATCTGCATTACTCAAGGAGAAGGGAAAAATTGAAAAGGATAAGCTCATGTTGAGAGAAGAAG CTCAGAAACAGGCCAGCATGAATGCGGAGGTATAAGCGATGAAATTCCAAAAACACGGTCAGAGT CTATAGTCTTACCGCTACCAAAATCAGGAAAGCCAAAAGCTGCTCTTGGTTTTTTATATATCGGT AATATGCCAAACATATGTCGCTTAAATGAAAGATACATTTTTACTAGGACTCGAAAACGAACCAA GATTTGGCGGCGCCAGATTAAGTGTTGAAACAATGCCGGATATTATGTAATATTTTAGTTTTTAA GTTCTAAAAAAAACGTAAAGCTAATGACATTGATATATAAAACTTTTATAAGATCTAGACTTGAA TATGGCACAGTAATCAGTGTTGCCCAGGTGCAAGGTGAAAGGTTC Right flanking sequence: Indices 3153688 -- 3154187 GTAAAATCTATTTAACTATTTGCTTCTGAGAAATTCCGAGATTTACCAGCTAACAACCCGATCTT TTGACTTTTTACTGAAAAACCACTAATTTTGAATTTTTACGAATTGAAAAATTCATATACATACT ATATAGGCATCTTCAAATGATGATTTTGGTCTTGTTAAAACGCTACGAGTTTGATCAATCAGTTT ATGAACTTCTATTCGATTTCTTTGCTATCCACCGTTTAAAGCTTTTTTTTGTTGTTTCCAGTACA ATCTCGAAAAACTCACTCATGCTCATGAGCAACGCAAAGACAGTTCAACACGTTTTTATTCACTT TTTTAAAACATTAGAGAGGCCGTGGTCTCCGTTTTCTTTTGCGGGACCTCAAGACATATCGCTGC AAGAACCTGGCGCGAAATTCAAATTTTATATCATCAAAAAGTTTCGCGCGCGAAATTCTAAGTTT CTCAAAAAAGTTTGCATTGGCCCGTTGCTCATGTCAATAACTATT Found at i:3159328 original size:8 final size:8 Alignment explanation
Indices: 3159315--3159330 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3159305 GGCCATAAGA 3159315 AAAACTAC 1 AAAACTAC 3159323 AAAACTAC 1 AAAACTAC 3159331 GAGATAAAAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12 Consensus pattern (8 bp): AAAACTAC Left flanking sequence: Indices 3158815 -- 3159314 GACGCATATGATAGTGCAACTTGAGTATTATGAAATGGTTGGTTCTATGATTTTCGTGTATACTG TTTAGAGGGAGAAAAAACAACTAACAATGAATATTACTTGGCTCAAAAAAAACATCAGTTGGAGG GAAAAATGATAGAGATTTGGGGATAGGTGGGGGGAGATCATTATCATAAGAGAGCAACCAAGCTT TTTATACCTAACTCGCAATTATTTAATGATAAACTGACGATCATACTGGCGAACAATTATGAAAA TATAATTAGACACCCGCAGCTATACCAAGTTAAGAATTGAATAATTGCAAGACGAATGGTTGGGA TCAGATTGGGGAACAAGTAAAAATTAATTAAAAATACACACAATATCACGAATCAACAACGGGCA GCACTATGTAAACGGGTTTCAACAAAGCTTACAAACAACCGATAATAGAGAAAAACCGTGCTGAG TCCCCGACGCGGTAGTGCATCGGATGCCATCCAGCGGCCATAAGA Right flanking sequence: Indices 3159331 -- 3159830 GAGATAAAACTGCATTGATTCTCTCGGGGTATTGTTGATGCAAGAAAACAACACCAAGAGAAACA AAACAATGGTACAAATTGCCAGGCAACAACAACATTTTTGGGGGAAATGGGAGGATACAATAAAA TTCAATGTTAAAACCCTAGATCACGCATAGAATCCATTAAAATATTCGTCACTTAAAGCTCTGAG ATAAAAAAAATTGAATGATTAAAACACAATTACAGAGAGAATAATATGAAATAAAAGAGAGGAAT AAGCCACGCTTTAAAGAAGGAGACAGAATAAAAAAGAGAAGGAGGAAAAAATGATTATTTTAATA TGGATGGAACGAGTAAAGGAAAAAAGGAAGACAACTAAATTATAAAAAAAGGAGTATGGTGCGAG ACTTTAATGTGGAATTCCGGATTTCCGTTTGTTGCGAATAATGTTTAAGCTTGTGGAGCTTGCCA ATGATCAATTGGAGCCTGGCCTGGGTTTGAGTAAAAACCTCCACC Found at i:3159912 original size:9 final size:9 Alignment explanation
Indices: 3159898--3159915 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3159888 TAATTTTGCA 3159898 TTATTTTCT 1 TTATTTTCT 3159907 TTATTTTCT 1 TTATTTTCT 3159916 CCACAAACCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78 Consensus pattern (9 bp): TTATTTTCT Left flanking sequence: Indices 3159398 -- 3159897 ACAATGGTACAAATTGCCAGGCAACAACAACATTTTTGGGGGAAATGGGAGGATACAATAAAATT CAATGTTAAAACCCTAGATCACGCATAGAATCCATTAAAATATTCGTCACTTAAAGCTCTGAGAT AAAAAAAATTGAATGATTAAAACACAATTACAGAGAGAATAATATGAAATAAAAGAGAGGAATAA GCCACGCTTTAAAGAAGGAGACAGAATAAAAAAGAGAAGGAGGAAAAAATGATTATTTTAATATG GATGGAACGAGTAAAGGAAAAAAGGAAGACAACTAAATTATAAAAAAAGGAGTATGGTGCGAGAC TTTAATGTGGAATTCCGGATTTCCGTTTGTTGCGAATAATGTTTAAGCTTGTGGAGCTTGCCAAT GATCAATTGGAGCCTGGCCTGGGTTTGAGTAAAAACCTCCACCGCCACCACCCTGACGGTTCATT CCACTGTTGAAGCCACCTGAAATCAAGGAATTGATTAATTTTGCA Right flanking sequence: Indices 3159916 -- 3160415 CCACAAACCTCTTCTTGGGCCACTGAAGCCGCCACCGCCACCACTATTAGAGGTAGACGACAGAG AGCTATGAGCTCCGAATCCTCCATTCGTGAACGGGCGACGTGGTGCTCCTCCTCCGAACGAACCA CCGTAGGCGGGTCCACTTCCGAAACCACCAGTGGCTCCACCGGAATTGTAATTTGAGAAGTTTCT GAAACTATTAGCAATATTAATTTTCAACTGCTCATTTGATCTTACCCTCCGAACGATCCACCACC ACCACGACCAACACGATAGTCGGTTGCTCCGAAGCGACGGTTTCCACCACGTTGTCCACCTCCAA TGCGTCCTTCTGCAGCAACTTGATGAAGCCATTCTGGGACTTCTTGGTTGGATTCGACAATCAGA TTCTTCAAATCACGACCGATTCCTCGATTCTTGTCATTGAAGAAACTGGTGGCAATTCCAAGGTT TCCGCATCTTCCGGTTCTACCGATACGGTGAACATATTCGTCAGA Found at i:3162198 original size:8 final size:8 Alignment explanation
Indices: 3162185--3162200 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3162175 AAAAATGAGG 3162185 TTGAAATC 1 TTGAAATC 3162193 TTGAAATC 1 TTGAAATC 3162201 CGTTTCGAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38 Consensus pattern (8 bp): TTGAAATC Left flanking sequence: Indices 3161685 -- 3162184 CTCGGCTCCACTGTAACGTCTACTAATAAAAATTGTAATTCAGATTTAAACATACTTGTTGTTGA AACCGTTTCCGCTGTCGGCGAAGTTGTTGTACCCAGACGATCTGCAATTTCAAGATTTGATAAAA GAGAAGCCTCATTTCAGGTTAACAAAAAGCAACAAAGGAAATGAAGAACAAGCATATGGTTAGAG GCAAACACAATCACCAGCACACTATACACCTGTTCTCACCCATTCTCATCGAAGTTTTCAAAGTT TTCTGAGTAGCCCATTTTGAAATGCTGCTGCTGTTGTGGCTGCCCTTGAAAGTAAGGAGAAGGAA CAAATCCAGCATGAGGAGCACCCATCATCTGCCCCATCCCTGGGACCATAGGTTGTTGAATTGCA TACCCGTTGTTTGACGGAGTTCCGTTGGCGAATCCGTTGTAAAATACGCCTCCTGCAGGCATATT ATTGCTCTGTTGAGAATACGAGGATGACCAGCTGAAAAAATGAGG Right flanking sequence: Indices 3162201 -- 3162700 CGTTTCGAAATCATACCCTTGTCCCTGTTGTTGTTGTGGCGGCTGTTGTTGACCGTTGTGATTCG CATAATATTGTGTGTTCATTGTAAGACTATATCAAACGGAAACCCGGAATTCGAAAAAGAAAAAT CGGCGAATCTAAACCGATTTTGTACCCAATTGACGTCGAGATTACAGAATATGTATCTGAAATTC ATTTTATTGGCTTGTTGCGAAACAAATGAAGTTTTAAGACGGAGAAAATGAGTATTTATCATTAA TAAACGACGAATTATCATTTTTCGCATAATTTAACTCGAAAATTATGCGAAAAACGATGACAATG GAGAAAATCGACACGAAAAACCGTAGAGAAGAAGCGGAAATGAGAGAAGTGAATTCAGCACGCAA TGATGAAGAGACGTTTGTTTTCCCATCGAGACCCGCCGACCGTGTAAATCGGTGCGCCTTTAAAG TGCGTGTGTGAGGAAGCGTGTTTCAACGCAAAAAACGCTCCGAAA Found at i:3164531 original size:9 final size:9 Alignment explanation
Indices: 3164517--3164534 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3164507 CAATTTAATT 3164517 TTAGGCAAA 1 TTAGGCAAA 3164526 TTAGGCAAA 1 TTAGGCAAA 3164535 CTGCCAACTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22 Consensus pattern (9 bp): TTAGGCAAA Left flanking sequence: Indices 3164017 -- 3164516 GATTAGATCTTGCAGTAATCTAATGCATTTGGTTTTGCCGAAAAATGATTTAAAACAGCTTCCAG ACGTTTTTGGTGTGTATTTTGTGGATTTTTTTTTGTTTTTTTAGACGGAAATTAGTCGAAATATA CCAAATATAACTGTTAAATAGCATATCTTTTCAATTTCGCAACAAAAAATTTGAATTATTTTGAA TGACATGATTTCGAAATTAAATGTTTAATTCCGGCAAATTGCCGGTTTGCCGGAAAAAAATAAAA TTTTAAATTCTTGCGAATTGCCGATTTGCCGGAAATTTTCTATTTTTTCAAGTATGCCGATTTGC CGGAAAAAATTAAACTTTGAATTCATGCAAATTGCCGATTTGCCGGAAATTTTCAATTTTAATTT CGCGCAAGTTGCCGGTTTGCCGGAAAATTTTTTAAAATTCCGGCAAATTGCCGGTTTGCCGGAAG TTCTTAAAGGGATTTTTTAAAAGATAGTGTGCCTACAATTTAATT Right flanking sequence: Indices 3164535 -- 3165034 CTGCCAACTTGCCGGTTGCCGATTTGCCAAAACAAATATAACTATGAAAATTTCCAGATTGCTTG CCAAAACTAAAATTCATGGATCTTTCACACAATCATCTGGATGCTCTTCCTGCTTCAATTTCAAA ATGTGAAAATCTTGAATCTCTAATTCTCAACAACAACCGCCTCAATGAATCGAGTTTCCCGGATA TATCAAATCTCTCGAATCTTCATATTTTCGACGCCGCTCACAACACAATTTCCAAGATTCCTGCG TCTCTCACTTCTCACAATCTTTCTGCAAAACTCCATACGATAATACTCTCTCATAATTCAATTGA AGTGATACCGGATAGTTTGAGCAATTTGAAGCAATTGAAAGAGCTTAAAATTGATGAGAATAAGC TGAAAGATGTTCCGAGTGTGATTGCACACCTTCCCAAGTTGAAGGTTTTGGATATTTCGAAGAAT TGCTTCTCGGAGAGCAGATTTCAGAAGCTTGCCAATGATAAGCGT Found at