TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10842068 original size:7 final size:7 Alignment explanation
Indices: 10842056--10842069 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10842046 AAAGGTAAGC 10842056 GAAAAAA 1 GAAAAAA 10842063 GAAAAAA 1 GAAAAAA 10842070 TTCCGATCCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (7 bp): GAAAAAA Left flanking sequence: Indices 10841556 -- 10842055 TGGTTGTGGTGCTCGTAGCATGTGCTCCTGTGATCTTCGACGTACGATCACCCTCAATGACGACT TGTACAAGACCCTTGATCTGCCCATTTGGAGCCGCACGGAACAGGAGCATCACGATTTTTGTGCA CGCAAATGTCAGAATTGCACATGTTGCCTGGAAAAAATTAAGTTTTTTATGATGAATACACGCTC CGCCCCCGAAGCGAGGGTCTCGTTAGGTAATTGGCGGTAATGCAGTGAATTCGAATTTTTTTGAT TAGTTTTGACAATTTTCAAGCATTTTTCGTCTGTTTTGCTAGGTTTTCAGTAGTTTTTAATGATT TTATAGTCGAAATTTATGAAAAAAAAATCAGATTTTTTAAACATAATTTAGACAAAAAAAATCAC GGAAAATGCTTGAAAATCGAGGAAACTAACAGAAAAGTTTGAATATACAGTTTTACCGCCAAATA CCTAATAGCTTTATTTTTCGTTTTTTTTTTGGAAAAAAGGTAAGC Right flanking sequence: Indices 10842070 -- 10842569 TTCCGATCCACTGGAAAACTCATAAATCTTCAGAATTTTTTTTTCCAAAAATTACAAAAGGGTTA ATTTTTAATCAAGATTTTGAAGTTTTTCAAAATAAAATTTTAAATTTACAATTTTTTTTGTCGTT TTTTGGGTTCTTAAAAAAAGTATTTATTTGTCCCTAAAACTACGGTAATTTATGATTACCGTGAG AATCGCGTAGACAATAATGAGCCGGAAACTGAAACGAAGCGAATCAACAAATCCGATGAGTACAA TCAGCGTTGAGACACCCATTCCGATACAGCATACTGCAGACGTTAGGAATACCTGAAAATTGTTT AAATTAATACGAAAATCTAGTTTTTTTTCTTTTTCTTTTTTTTTGAAAAAAAAAACCATAAAAAC CTGTTAACCTGCCACTAACAGAAAAGTTCATATATTTCCAAATGTTATGTGTTTTTCAAAAAAAT TATACTTATAAAACCATTGCCATTTTGATCAAAATATTAAAGTTT Found at i:10843732 original size:7 final size:7 Alignment explanation
Indices: 10843720--10843733 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10843710 TTTATTATGA 10843720 TCTTTTT 1 TCTTTTT 10843727 TCTTTTT 1 TCTTTTT 10843734 AAATCTGGGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86 Consensus pattern (7 bp): TCTTTTT Left flanking sequence: Indices 10843220 -- 10843719 TTAAAAAAGAAATTTAAATATTTTAGATTAATCGGAATTTTAGATTTTTTCGACTATTGGAGAAC ACCTACCAAATTTCAAAAATTTCCGTTTTTAAAAATTCGTATTTCTTTCTTTTGATAAATCTTTA TCCTCTCTTTTTTTAAATTTTCTAAAAATAAATAGTTTTACGAATATTTTTGAGAAAGCAAGATG ATTTTTTTTAATTAATAAATACTTTTTAACAAATATTTACCGTCTGAAATCCCATAAGAACCCCG AAAGGCCATTGCATGAAGAATCGAAAATCAGCATTAGTTCGAACGGCTTCCATTCTGTAAAATGT GTGTGGAATGCTATTCTTTTTCTCTGTTTATTCCGATAGTAAACAAATTACTAGAGAAGCAGCAG TAAGAGAAAGATATTCAGAGAAATAGAGGAAAAATATTGAAACGACGATTAGACACTATATCATT CTTGGGAAAATGTGATTTTACTTATATTAGAAATATTTATTATGA Right flanking sequence: Indices 10843734 -- 10844233 AAATCTGGGAAGTTAAAAAACAAACAAACAAAATACATGGTGCCCGTTGGGACGCGACGGAGAAT CGCGTCAGAAATGGTATGAGTCATAGGGTTGTGGAAAATAGTCTCAATTTGAAATCGAGGTGCAA ATGCGCTCCACTGGGCCAAATTAAAAACTCTCCGCCTCCAAACCAAGGGTCTCGTTAGGTATTTG GCGGGAGAAGCGGAAATTCAAATTATTTCAAGTATTTTTCTACTTTTTTGCCCCGCTTTCCGAAG TTTTTCTCAACTTCACATGCATTTTCGACGAAAAAATTACTGAAAACTACGGAAAACATAGCATT TAAAACATTTGAATTTCCGCCTTCTTCCGCTAATTCCCTAACGAGACCCATGGTTTGGAGGCTGA GCATTTTCAATTGACCGTGGAGCGCGTTTTTTCAATCGAAAAAACTTCCACACCCTATAACACAT AACAAAAACCCAGAAAATGAGAGAAAATGGGGGGGGGGGGGGGGG Found at i:10845388 original size:8 final size:8 Alignment explanation
Indices: 10845375--10845390 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10845365 TTATGGAATT 10845375 TTTCTAAA 1 TTTCTAAA 10845383 TTTCTAAA 1 TTTCTAAA 10845391 GTGATTTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (8 bp): TTTCTAAA Left flanking sequence: Indices 10844875 -- 10845374 CAGTCAAATTAGAAGTTATTCTTAGATAAATCAAGTGATTTTCTATAATTTTACACTAATTTTCA ATGATAAATATTGGAAAAACATGGTGCAATTCCATAATTTCCAAATTAACAAAATTTTTCTTACA ATTCCAATTTTTCATTGAGCAATTCTGTATGTCGAATTTCAACTTCCATTTTTCGAAGCAACAAA GCTTCTTTCTTCTGTTCAAATGTCGATGTGACTGAGGATGCTCCGGGGCTTCTGAAAATATGTTA ATAGTTGAAAATTAACAAAGATCTCTCACTTTTCTGACTCAATCCGTGACCGTTTTGCCGCCGGT GGCTGAATTGGATGAGTGATGGCAATCTGTGGAGGTGATGCAGTAGATGAGTGTGGAATTGCGTA AACCGATGGAGCTGTGGCTGATCGAGAAGTTATTTTTCTGAAAAAAACGTTCAGGTTATTGAAAA AAAGGTAGTTTTGTGGGCTTTTGCCTATAAAAAATTTATGGAATT Right flanking sequence: Indices 10845391 -- 10845890 GTGATTTTTTTTCAATTTTGCAACAAGAGCATGCTAAATTATTTTTGAACTACCGGCATTTTCCA CATTTTTGCGGTTTCCTGCTGTGAAACATAAATTGTCAATTTTTCAGACAATTTTCCGCAAAAAA ACTAGCCAATTGGAGATGAAACTCTAAAATTTTTTTCAAAAATAATTCTGTCCTTTGCAAATTAA AAAAAAATCATTTGAAAATTTCAGAAAAAGCTACAGGGTTGGGACTTTTTTTTTGGTATATTGAC GAAAAATGTTTTTTTTTGTTGGTTTTTTAGACAAAAAAAACAGGAAAACTTTCACTTTTTCAGCG TTTTTTTTAAATAACTTCAAGCATTAAATTTTTTTGGTATTTATTTTTTATTTTTCGGTAACTTT AATTTTTTCTTTTTTTGGTCCAAAATCAAAACCAATTTTTTTGTTTTTGGTCCCAACTACTACTA ACTTAGATATCGGTGACTTTGTAAGTGCCCGAGCCTGCTGTAGAG Found at i:10845767 original size:7 final size:7 Alignment explanation
Indices: 10845755--10845770 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10845745 TTTTTTGGTA 10845755 TTTATTT 1 TTTATTT 10845762 TTTATTT 1 TTTATTT 10845769 TT 1 TT 10845771 CGGTAACTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (7 bp): TTTATTT Left flanking sequence: Indices 10845255 -- 10845754 GAATTGCGTAAACCGATGGAGCTGTGGCTGATCGAGAAGTTATTTTTCTGAAAAAAACGTTCAGG TTATTGAAAAAAAGGTAGTTTTGTGGGCTTTTGCCTATAAAAAATTTATGGAATTTTTCTAAATT TCTAAAGTGATTTTTTTTCAATTTTGCAACAAGAGCATGCTAAATTATTTTTGAACTACCGGCAT TTTCCACATTTTTGCGGTTTCCTGCTGTGAAACATAAATTGTCAATTTTTCAGACAATTTTCCGC AAAAAAACTAGCCAATTGGAGATGAAACTCTAAAATTTTTTTCAAAAATAATTCTGTCCTTTGCA AATTAAAAAAAAATCATTTGAAAATTTCAGAAAAAGCTACAGGGTTGGGACTTTTTTTTTGGTAT ATTGACGAAAAATGTTTTTTTTTGTTGGTTTTTTAGACAAAAAAAACAGGAAAACTTTCACTTTT TCAGCGTTTTTTTTAAATAACTTCAAGCATTAAATTTTTTTGGTA Right flanking sequence: Indices 10845771 -- 10846270 CGGTAACTTTAATTTTTTCTTTTTTTGGTCCAAAATCAAAACCAATTTTTTTGTTTTTGGTCCCA ACTACTACTAACTTAGATATCGGTGACTTTGTAAGTGCCCGAGCCTGCTGTAGAGCTGCATCCAC AGATAAACTCGGTGATACGTGCGTCGCTTTTATATAATCCAGAATATTATCAGCGGTAGTCGTAG AGACAGGTGTAATTGGCACTGGAATCGATAGAGGAGTATTTATTGCAATTTCTTCAGTTTTTGGA ATGAACATCTCGTCTTTTGATTCGAAACTTGACGCTATTTCCTGAAAAAAAATTTTGAGTTTTTT CTTCTCAAGAAAAATGAAAAAATCATTGAAAAATAATTACCGGCGTATCCGTACTATCCTGATTA ACAGATCGAAAAATGAATGATCTTAGAAGATCAACACTATCAGTTGATTGTTGTGATGTATGAGA TGCAGTTGATCCTTGAGAAATGAATGAGCTTGTCGCTTGATTGAA Found at i:10852433 original size:7 final size:7 Alignment explanation
Indices: 10852421--10852436 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10852411 AAACTAATTT 10852421 TTGAAAA 1 TTGAAAA 10852428 TTGAAAA 1 TTGAAAA 10852435 TT 1 TT 10852437 ATCCGAAATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (7 bp): TTGAAAA Left flanking sequence: Indices 10851921 -- 10852420 AAGTGATAATTAAATAAAAATTAAGCTGCAGACCCTGCGATATCGAAAAGTTGACAAAAATTTTG ATTTTAGCTCAAAATAAGCCTTTTTTCCTAAACTTTGAACCGCCATAACTTTTTTGAGACATTTT CAAAACGTTTCATCACGAAATTCGGTAGTTTTGAGTCTAAAATTTCGGTACTTCACCTTTGAGAA TAAAATGTATAATTTGAAGTGAGTCACATAATTATTTCGACTATTAGTAACGTACACTAAATGAA AATAATAAATAAATCTCAGAATGATAGAATTGTCATGTGATGAAAGCTGATCGGACTGTCATGAC AATTCTAAGAGTGACAGTCGCTAGTGACAATATTGTCATTCCATTCTTATCACATTAGCCTCGGC GATCTCTTGAATCTCGCTGATGACGTCGCTAATTGCCTGACATGCGATATTTTATTTTTCTTCTC GGGGCATAAACAAATTCAGAAATACGTATGTATATAAACTAATTT Right flanking sequence: Indices 10852437 -- 10852936 ATCCGAAATTCTATAGGAAACGAAAACTGCAGAAAAATTGTAGTTTTCTGATCGCAAAAAATGAA ATCACTCGAATTTTTGAGCTCAAATTTCTTAAAAGACGTCGAAATTTGAAGGAGTTTTTGTCGTT GAAAAGACATTTTTTATTTCATTTTTTCATCTCAAGACGTCTGCGCACTACAATTTTAGTCTAAT TTATGTTTTTTTTCTTAAAGGAAAATTTATTCGAAAACAAACTTTCAATAATGTTGTACTTCCTA ATGTTTTCAGCTGCCTATGAGCTTGCGTAAAAGAAAATGCACATGTCGATTCCAAGAACTCACAG CGTCATTCAAATTTCGAAATCATGATCGCTGGTCTTTGAGTTTTCAAAGGAATTTTATGGATAAA ACTTAATATTTTCGTGAAATTTTGAGTTTTTAGAACTCTAAAGCAAATCGAAGGTTTGATTGAAA AATGCAACTAAAAAAAGAAAAAACGAAAAAAAAACCTCAAAAAAT Found at i:10856845 original size:10 final size:10 Alignment explanation
Indices: 10856830--10856850 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 10856820 CCACAAGAAT 10856830 TTTTTTAAAA 1 TTTTTTAAAA 10856840 TTTTTTAAAA 1 TTTTTTAAAA 10856850 T 1 T 10856851 CAAATTTTCA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (10 bp): TTTTTTAAAA Left flanking sequence: Indices 10856330 -- 10856829 TTCAATTTTAGATTTTTTACTGGAAAAATTCATGGAAATCTTTGAAATTTCTTAAATTTCAGAAT TTTTTTTGTTAAACAAAATAAAATTTCTGAAAAAATAAAAATAATTACTACATAGGTTGTAGCTT TTTTTCAGTATTTTTTGGAAAACAAAAAATCTGATTTTTGTCAATTTTCGAAAAAAAATGTGTAC AATTTTCTATTTTCAGAGTAATTTTTTTTGTTCTCGAAAAGCTGTTCTCGAAAAAATCGAAAATT ATATATTTTTTAATATCAATTTTCAATTGTCCAAATTTCCAAAACCGAAAAATTTCGTTATTCGG GTTTATTTTTCTATTTTTTTGTCTGTTTTTTCTTTCTATTTTTCCATTAAGTTATGGTAATAATT TAGAAAAAATCGAAAAAGCTCGTTTTTTGAAAAAAAAAATTTTTAATTAATTAATTAATTTTTTT CAAAATTTCTAACATCGAAAAATGTTCGATTTTGGCCACAAGAAT Right flanking sequence: Indices 10856851 -- 10857350 CAAATTTTCAATTTAAAACTGTAAAAAACTGATTTTCTTCTTTCTACGAGAATTATCGATGTCAT TTTTTAAATTTATATTCCAAAATCCAAAAATGTAAACCTCGTAGATGACAGTTGAAAGCTGCTTA CACCGCTCATGTTGCTGTTTATTATCTTCTTCTTTTTTGAGAGCATTCAGAAATGAAAGAACTTC TTGATTTGTGAGCATCGTTTCTCTCGTTTTTAAAACTTCCATCTGAAAAAAGTGGGGATTTTTAA ATTTAGACAGAAAATTGGGTTTTCAATATTTTTTTTAGGAAAAAAAATTATTTCAATAATTTACG ATAATTTCCTTTACAGAATTTTTTCCGAAAAAAAAACGAAAATTTTTGAATTTTGGGAAAAAATT CAATTTTTCATAATGCGAAAAATCTAAAATTTTATTTTTTTTACGATACTTTTAGTCTAAAAACA TTTTTTGAATAATGTTTTCAAATTTTCAATTTAAAAAAATATTCA Found at i:10856943 original size:7 final size:7 Alignment explanation
Indices: 10856931--10856944 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10856921 AAATTTATAT 10856931 TCCAAAA 1 TCCAAAA 10856938 TCCAAAA 1 TCCAAAA 10856945 ATGTAAACCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14 Consensus pattern (7 bp): TCCAAAA Left flanking sequence: Indices 10856431 -- 10856930 AAAAATAATTACTACATAGGTTGTAGCTTTTTTTCAGTATTTTTTGGAAAACAAAAAATCTGATT TTTGTCAATTTTCGAAAAAAAATGTGTACAATTTTCTATTTTCAGAGTAATTTTTTTTGTTCTCG AAAAGCTGTTCTCGAAAAAATCGAAAATTATATATTTTTTAATATCAATTTTCAATTGTCCAAAT TTCCAAAACCGAAAAATTTCGTTATTCGGGTTTATTTTTCTATTTTTTTGTCTGTTTTTTCTTTC TATTTTTCCATTAAGTTATGGTAATAATTTAGAAAAAATCGAAAAAGCTCGTTTTTTGAAAAAAA AAATTTTTAATTAATTAATTAATTTTTTTCAAAATTTCTAACATCGAAAAATGTTCGATTTTGGC CACAAGAATTTTTTTAAAATTTTTTAAAATCAAATTTTCAATTTAAAACTGTAAAAAACTGATTT TCTTCTTTCTACGAGAATTATCGATGTCATTTTTTAAATTTATAT Right flanking sequence: Indices 10856945 -- 10857444 ATGTAAACCTCGTAGATGACAGTTGAAAGCTGCTTACACCGCTCATGTTGCTGTTTATTATCTTC TTCTTTTTTGAGAGCATTCAGAAATGAAAGAACTTCTTGATTTGTGAGCATCGTTTCTCTCGTTT TTAAAACTTCCATCTGAAAAAAGTGGGGATTTTTAAATTTAGACAGAAAATTGGGTTTTCAATAT TTTTTTTAGGAAAAAAAATTATTTCAATAATTTACGATAATTTCCTTTACAGAATTTTTTCCGAA AAAAAAACGAAAATTTTTGAATTTTGGGAAAAAATTCAATTTTTCATAATGCGAAAAATCTAAAA TTTTATTTTTTTTACGATACTTTTAGTCTAAAAACATTTTTTGAATAATGTTTTCAAATTTTCAA TTTAAAAAAATATTCAAAGACTCTCAAACATTTTATATTCTGAACCAAAATTTGCAAATAGCCAA CGCGAACTATTTTATTTGCATTGGTACACGAATATAGAGACATAA Found at i:10857664 original size:10 final size:10 Alignment explanation
Indices: 10857649--10857668 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 10857639 ACAAAGAGGA 10857649 AAAAAAAAAC 1 AAAAAAAAAC 10857659 AAAAAAAAAC 1 AAAAAAAAAC 10857669 TCGTAATCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00 Consensus pattern (10 bp): AAAAAAAAAC Left flanking sequence: Indices 10857149 -- 10857648 GAAAAAAAATTATTTCAATAATTTACGATAATTTCCTTTACAGAATTTTTTCCGAAAAAAAAACG AAAATTTTTGAATTTTGGGAAAAAATTCAATTTTTCATAATGCGAAAAATCTAAAATTTTATTTT TTTTACGATACTTTTAGTCTAAAAACATTTTTTGAATAATGTTTTCAAATTTTCAATTTAAAAAA ATATTCAAAGACTCTCAAACATTTTATATTCTGAACCAAAATTTGCAAATAGCCAACGCGAACTA TTTTATTTGCATTGGTACACGAATATAGAGACATAAGTAAAAATGTCAAATTTCAAAAAAATTAC ATATAAGTTATGATAGCTAAATGAGAGAATTGAATTCCTAATACTCGAAAATATATTTACAGATT AGGGCAGAATATTTCAAATATTAAAAAAAAAGTGCCGAAAAATTATGACTGAGCATAAGAAAAGA AGTGGGGAAAAGCGTACAGTAATCTCTTAAAAGGTACAAAGAGGA Right flanking sequence: Indices 10857669 -- 10858168 TCGTAATCAAATGGTTTGACGACTCAGCGGGGAAAGGAAGGGCGATGTGGGATTGTGAAAGAAAT GCGATGAAGAAGCTCAGCATTTTCTGTGAATTTTGTAAAGAAAATTAAATAAAAAATCAATCAAG AAATCAAGGACGAATAAGCATTTTTCCAATATTCTTTCCATTCATCATATCGACAAATGCACTTG GAGCAGCGTTGAGGCCATCGTAGATTGTCTCTTTCACCTGAAAAATATTTAAATTTTTTTTGTTT GAAATTTTCAAATTAGCACAAAAAATGAATGTTTTAGTTTCGACATTTTCGCTTTTTTTTGGACA AATTCATCGGTTTTTCTTGAATTTTTTTTCACTTTTAGACACTTTTCCGAAAGAGTTATAAATTA ATGAGACTTTTTTTCCTTCTAGAAAAATGTCTGAAAATTTACAAAAACGGTGTTTTGAGTAAAAA ATTGGAGAAATAAGCGAAAAATACAATTTTTAAAAAGTTATATTC Found at i:10860651 original size:7 final size:7 Alignment explanation
Indices: 10860639--10860652 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10860629 CTTTTTCAGA 10860639 TCTGTTT 1 TCTGTTT 10860646 TCTGTTT 1 TCTGTTT 10860653 AAAACAATTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71 Consensus pattern (7 bp): TCTGTTT Left flanking sequence: Indices 10860139 -- 10860638 TTGACAACTTTCCGGCCAATTTTGTGCACTTTTTCAAATATTTTAACTGAAATTTATGATATTTT CAGATAAATCTGGTGATTTTCTATATTTTCATAGTCATTTTTTATGAAAAACGTTGCACTACGTT GAATAAACGTTTTTAATTACAAGTTAGTGTCAAAATATAGAACATTACTTGCTTTATCTGAAAAT AACATAAATTCCAGCTGAGATTTTGAGAAACTGCTCAAAAATAGCATGAAAGTTGACAATTGCTG AAAAACGAAGCTGGAAAATTATATATTTCGATAATCTTTAATTTCCAACTTTCAGACCATTTTTG TGCATTTTTTCAAATTTTTCAGCTGAAATTGATACTATTTTTCAGATAATTCGAGTCATTTTCTA GATTTTCATATTAATTTTTAATGAAAATTGTTGGAAAACAGGCCATTTTGTAGAATAGCCGCCAT CCCCTGGGTTAACAATAGAGCGCGATTTCCCAGCTCTTTTTCAGA Right flanking sequence: Indices 10860653 -- 10861152 AAAACAATTCTTCTGGATTTTCTTGAATAATTTTTTTTTCGTTGAAAATCTTTAAATAAAATCTT ACCTGGCCTCTTAACAAAAATGACAACTTTATTGTCAGCTGGAAGTGGCTGATGTGCTGATGACG AGGACGACGTCATCTGGCGCGCCTGAAAGATGCGCATCTTGATTGAGAGTATGAAGAATTTTGGG GTTTTTTAGAGAGGCGGAGAGAGTAAATGCAACAACATGTAACACAAATTGGTGTTATTATCAGT AACAGTACAAAATGCTGGCAAAGAGAGAAAGAGAGAGAGAATAGAAGCAGCAAACACATGTGATA AGAAAACCAAAGAAAAATGGACAGAGAAGACGACGAAAGAGAATATTTCAAACTAAACTCGGGTA GAACGCGCCCTTTTTCATGCGTATTCGGCATGGGACACTGGTGGACAAAGTGCATTGAGCTGCAA ATTATAGAAATTTGATGCTCCAGGATCAACTTGCTTCAAAAAATC Found at i:10862505 original size:8 final size:8 Alignment explanation
Indices: 10862492--10862508 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10862482 GAGAAGAAGG 10862492 AAAATTAT 1 AAAATTAT 10862500 AAAATTAT 1 AAAATTAT 10862508 A 1 A 10862509 GTCACCATGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (8 bp): AAAATTAT Left flanking sequence: Indices 10861992 -- 10862491 ATTCTATTATACGAGAAGAGAATTAGATGACTCAAGAAACAGCACGAGGCAATTTTCGATAATTT CTCTGGGTAAAGGCCGGCAAACGGAACGGTGAACACCGTCGCTTCAAATGTTTCAAATGACCTTC CTCTGGTTTTTCAGCAGCAGCATCAATGCAATCGGCGCTCTCGTTTCAAATTCTGCGAAAACCAG TTTGGCTGGTTCGTGAGAGACGGCGCCAAACAATATCTTGACTATAGATCAAAAGTACTCGAGAG CAAATCAGATTGATGAAAATGTGTCTCGGGAGTAAAAAAACTAAGGGGGAATAAGGTTCCTTATG AAATTCATCTTGTCAATTGTAACGGGCGCGTGTGTGTCCAATGTCTGCGTCTCTTGTTTATTACC GAGACGACTGACATCCGTTCGAAAATGCAAAGATCACAACTTGAAGGCAACATTTTTTGAGCCAG GCTATTTGTTTCTAGTTATTAATTATTTTATAGTAGAGAAGAAGG Right flanking sequence: Indices 10862509 -- 10863008 GTCACCATGTGGAATTGGAGGGGTTTTTTAAAAATAATAAAAATAATTCTTTAATTTACTTTTTT TTCGAATTAGCCGATTTGCTACGAAATTTCTTTAATTTTTTTTACACGGAACTAATTTACAAAAA TTAATTTAGTCTAAAGAAGTGATAACTGAGAACCTGTGCTGTGATAAAATGTGCACTTCTCAACA AAAAAGTGTTGCAAAAACATTTTGAAACATGGTCTCTCTCTCTGGGAGTAATTGATCGAGACGGA TAGTTGGGGGAACCACCGATGGGTTCTGGGACTCTCTTTGTCTCCTATACACACTCTCTCTCTCC TTCCAACACGCTTTCTCTCTCTCTCATTTCGATCAACATTTCCAAAGTGAAATCAAAAAAAAACG AGTGAGACGAAGAGAGATGACAGAAGAAATTCAGAAATATAAACCGCGTCAGTCGAAAAAAAAAA CAACAAGGAAGGGTCACCTTGGGAGCTGAAAATGATGAAAATGGC Found at i:10862551 original size:9 final size:9 Alignment explanation
Indices: 10862537--10862555 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 10862527 AGGGGTTTTT 10862537 TAAAAATAA 1 TAAAAATAA 10862546 TAAAAATAA 1 TAAAAATAA 10862555 T 1 T 10862556 TCTTTAATTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26 Consensus pattern (9 bp): TAAAAATAA Left flanking sequence: Indices 10862037 -- 10862536 GAGGCAATTTTCGATAATTTCTCTGGGTAAAGGCCGGCAAACGGAACGGTGAACACCGTCGCTTC AAATGTTTCAAATGACCTTCCTCTGGTTTTTCAGCAGCAGCATCAATGCAATCGGCGCTCTCGTT TCAAATTCTGCGAAAACCAGTTTGGCTGGTTCGTGAGAGACGGCGCCAAACAATATCTTGACTAT AGATCAAAAGTACTCGAGAGCAAATCAGATTGATGAAAATGTGTCTCGGGAGTAAAAAAACTAAG GGGGAATAAGGTTCCTTATGAAATTCATCTTGTCAATTGTAACGGGCGCGTGTGTGTCCAATGTC TGCGTCTCTTGTTTATTACCGAGACGACTGACATCCGTTCGAAAATGCAAAGATCACAACTTGAA GGCAACATTTTTTGAGCCAGGCTATTTGTTTCTAGTTATTAATTATTTTATAGTAGAGAAGAAGG AAAATTATAAAATTATAGTCACCATGTGGAATTGGAGGGGTTTTT Right flanking sequence: Indices 10862556 -- 10863055 TCTTTAATTTACTTTTTTTTCGAATTAGCCGATTTGCTACGAAATTTCTTTAATTTTTTTTACAC GGAACTAATTTACAAAAATTAATTTAGTCTAAAGAAGTGATAACTGAGAACCTGTGCTGTGATAA AATGTGCACTTCTCAACAAAAAAGTGTTGCAAAAACATTTTGAAACATGGTCTCTCTCTCTGGGA GTAATTGATCGAGACGGATAGTTGGGGGAACCACCGATGGGTTCTGGGACTCTCTTTGTCTCCTA TACACACTCTCTCTCTCCTTCCAACACGCTTTCTCTCTCTCTCATTTCGATCAACATTTCCAAAG TGAAATCAAAAAAAAACGAGTGAGACGAAGAGAGATGACAGAAGAAATTCAGAAATATAAACCGC GTCAGTCGAAAAAAAAAACAACAAGGAAGGGTCACCTTGGGAGCTGAAAATGATGAAAATGGCTG CTGGGGGCGAGGAATAGACGGAGAGAGAGTGGAAATTCGGAGAGG Found at i:10863303 original size:7 final size:7 Alignment explanation
Indices: 10863291--10863307 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 10863281 AACCTGTGCA 10863291 AAAATTT 1 AAAATTT 10863298 AAAATTT 1 AAAATTT 10863305 AAA 1 AAA 10863308 GGATCGTGCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (7 bp): AAAATTT Left flanking sequence: Indices 10862791 -- 10863290 GTTCTGGGACTCTCTTTGTCTCCTATACACACTCTCTCTCTCCTTCCAACACGCTTTCTCTCTCT CTCATTTCGATCAACATTTCCAAAGTGAAATCAAAAAAAAACGAGTGAGACGAAGAGAGATGACA GAAGAAATTCAGAAATATAAACCGCGTCAGTCGAAAAAAAAAACAACAAGGAAGGGTCACCTTGG GAGCTGAAAATGATGAAAATGGCTGCTGGGGGCGAGGAATAGACGGAGAGAGAGTGGAAATTCGG AGAGGATTAGAGAAAGAGAAGGGCGCGGTGCTAATGCTGGCAGAAGGAAGACTAGCTTCAGATGT CCTTAGAGACAAGAGAGGAAAAAATTGAATTTTCGCTGATAATTTCAGTTTGGCGGGAGAAAGTA AAATGGAAATTTATTGGTATTTACCTATTTCACCTAAATAAATGAAAAATTTCAATAAAAAAATA CAAAGAAGCCGAAAACAGAACGAAAATCGGTCAGAAACCTGTGCA Right flanking sequence: Indices 10863308 -- 10863807 GGATCGTGCACAACGTGTGGTCAAAGGTCTCGGCACGATTCATACAATTTTCAAATTAAAGGTAT GCGCCTTTAATTGAAGAAGAGAGATTACTGTAATTTTTTAAAGTTATTTTTCGCGAAAAATTGAT AAATTGCTGGAAAAGATTTGACTTTACTTGTAAAAGCATAAGTTCAGAATTAAAATATTTTTACA AGGTCCAGATACAAAGATTGTTGCTCTTATTATGACAATTTTCTTTGCCCTAATGATATTGTGTC GTTTCTCCAAACAAAAAAACAAATCAACAAGAACCATTTATATTTAGAAGAAAAGCAGCACCGTG AATATCAATCAAATCTATCGGGATTCACGCCAAGCTCGGAAATGTTCATCGGTATCGTTGAGCAC TAGATAAAAAATTTAAAAAAAAAACCGATGGACACCTTTTGAAAACTCGGCACTGGGAACTGACG TTTAACGCTTTAAAACACATAAAATCGGAGCAAAAAAATTGGGGA Found at i:10866951 original size:7 final size:7 Alignment explanation
Indices: 10866939--10866952 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10866929 CCAAACATTG 10866939 CTAAAAT 1 CTAAAAT 10866946 CTAAAAT 1 CTAAAAT 10866953 TACTCCAACT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): CTAAAAT Left flanking sequence: Indices 10866439 -- 10866938 AAGTCGAGGATGGCAATGCGTTCGCCACTTGAAACCTTCTCAACTGGAAGATTCTCGACAAGGGT GACGTGACTTCCTGAAGCTTTTCAACATATTAGTTTTTGTCTTAATTATGAAAATGTGAGTGAAT ACAAAAATCTAATACAAAAAAAAAGTTATTTTATTCTAAAATCACATTTTCATTGAAATTATCTA CTTACCGTTCATATTGGCACTATCAAATCGATCTTCTGGCGCCTTCTTCGGTGGTGGAGCTTTGT TCTGAAATATTATAATTCTGTATGGTATGTATTTTCGGCTTTTTAGAGCAAAATTTGAGAGCTTG TTAAACGTGGAGCCTGCTGACATGCAGCTGCCAAGGCAGATGAAATGAGAGTGAAAATGGCTGAA CTGTTAGGAGATAGTGAGAGACGCAGGGCATAGAGTGCAAAATAAGTTGGAAAGAGCAGCTTTTT GACTAAAACTGGCCTGAAAAGTCCGAAAAAAGTAGCCAAACATTG Right flanking sequence: Indices 10866953 -- 10867452 TACTCCAACTTCTCCTAAATTATTATCCTGAATTGCATCTTTTGGTCATTTATCTCTAATTAATT CATTGATTTAGGCACATTTTAAGTAGATAGGCATCAAAATTGGACGCCTACCGACTTAAAATGTG CCTAAATCAACCAAAATATGCAATAAAAGGTGATAATTTCATAAAAACAGTATTCCTCAATGCTT TGAGTGGCTCAAAACCGAGCATCGGGCGGCTTCAAGAGTAGGAAGAAGATGACAGCAAAAAACAA AGAAGAGATAGTTGAAAAGTTCTCTCAGCACAGAAACTGAAATCAAAATCAAACAATGTGAGAGA GAGCGAGAGAGTGGTGAGACGTAGAGATTGAAAAAAAAAGAGAGAAACAAAACCAAAGGGAACCT TTTGAATGACGACAAGAGGAAAGGAGAGAGCAGAACCAGTGCTGTAACAGAGAAAAAGAAATAAT GACGAAAAAGATAAAAGTCAGGAGAGAGAGAGAGAGAAATGGTGG Found at i:10867540 original size:8 final size:8 Alignment explanation
Indices: 10867527--10867542 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10867517 TCAACTAGAC 10867527 CCTAGTTT 1 CCTAGTTT 10867535 CCTAGTTT 1 CCTAGTTT 10867543 TCCAGCATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50 Consensus pattern (8 bp): CCTAGTTT Left flanking sequence: Indices 10867027 -- 10867526 AGGCACATTTTAAGTAGATAGGCATCAAAATTGGACGCCTACCGACTTAAAATGTGCCTAAATCA ACCAAAATATGCAATAAAAGGTGATAATTTCATAAAAACAGTATTCCTCAATGCTTTGAGTGGCT CAAAACCGAGCATCGGGCGGCTTCAAGAGTAGGAAGAAGATGACAGCAAAAAACAAAGAAGAGAT AGTTGAAAAGTTCTCTCAGCACAGAAACTGAAATCAAAATCAAACAATGTGAGAGAGAGCGAGAG AGTGGTGAGACGTAGAGATTGAAAAAAAAAGAGAGAAACAAAACCAAAGGGAACCTTTTGAATGA CGACAAGAGGAAAGGAGAGAGCAGAACCAGTGCTGTAACAGAGAAAAAGAAATAATGACGAAAAA GATAAAAGTCAGGAGAGAGAGAGAGAGAAATGGTGGAAAATCATATTAAAGATAATATTTTAAAA AAGTGCTGCTGTACTTGGAAAAATTGCAAAATTTTTCAACTAGAC Right flanking sequence: Indices 10867543 -- 10868042 TCCAGCATTTTAGTGTTCGGCTGGGAGAATATAACTACGATTTCGTCGAGGAGAATTTTCTACCA AGAAAATATATTTTCCAGTGAAAAACGCTTATCCCATGAGAAAAACCAAGGAATTCTCACTGAAA ATTGTGATAAATAAGACAAAAACTGCCAACAAATATTAAAATATACTCGGTTTTTAGACGAAAAC TATCAAGAAACGGCGCAGTAATCCTGAAAATCAGATAGAAAGTTCTAGAAAAGCCGGTATAATCT GAACTCCACGTCAATTAGGTCACCTAGTTTCGATATATCACTGGATTAACGTGAACATTTTTATT TATTTAAAAAGAAAACCCTTCAGGTTACAGGAAAATTAGCTTTTTTTCGCGAAAAAACATGTAAT TTGAGCGCCGAAACATATGGTGGAACCCCCCTTGAACAGAAAAGTCGGCATGTGGCTTTAGTGAC AACTGATCTTTTGTCTTCAGAGGAAGATATTGTGATTCTAGAGAA Found at i:10874240 original size:8 final size:8 Alignment explanation
Indices: 10874229--10874244 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10874219 TCCGGTTTTT 10874229 TAATAGAA 1 TAATAGAA 10874237 TAATAGAA 1 TAATAGAA 10874245 GGAGAACTAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25 Consensus pattern (8 bp): TAATAGAA Left flanking sequence: Indices 10873729 -- 10874228 GCTGTTTTTGTTGAGTTTTTGGTTCGTTTTCTTAACGCCTAACTATATTTTCAGTTTAAAGCTTA ACATTTCCTGCATGAATCTAAATATCTATTTTTCAATTTTAATTTCAGAAAATGCCACGGCCAAA AATTTTGAAACGAGCAACTGTCCAGCCCAGTGCCGCCGTTCCTGTGAAAAAATCGACTCCAGAAA AAGAAGGATCCAGACAGAAAAAGACGAATGGAAAAGAGAATGCTTCTAGAAATTTGCAATCAAAT TTAGAAGAAGATTTGGAACAACTGGGCTTCGAGTATGTATCTATTATCCAGATGAATTCTTGAGC AAAACCGGGTCTCGACACGGCAATTTTTGTTGAAAACAAAACGGGGGTGCGTCTATAAGGAGTGC TGTATTATCACAATATGTGTTCTTAAAGGCGCACAGATCTATTCAGGCGGGTCTCTGCGCGGAAA ACAGTATCGTAGTATTTTCTTTTTCTTTAAATTTTTCCGGTTTTT Right flanking sequence: Indices 10874245 -- 10874744 GGAGAACTAAATACAAAAAACGGAGTAATTTCTTGAAAAATGAAAGTAAAAAACTACCATAAAAT TTAAAAGTTTTTCGCGCGCCGAGACTCATCTGAATGATTCGGTGCGCCTTTAATAATGGTAGGCC AAAATTTCGTTGCGGAATTTCCATCGATTTTTCATTGTTTTTTGTTAAAATTTTTTTTAAATAAA CAAAAAACTAGGATAATTAAAAGCGCATGAATTTTAACGAACAATCGATAAAAATTCCACAGTTT GAAACTACAGTACTCTTTAAAGGCGCACACCCGTTTGTAATTCAAAAAAAATTGTCGTGCCGAGA CCGGGAATTTTGGCGCAAAAATTAGAAAATCTTCCATCTAGCTAAAAATAAGTACATTTTCGAAG CAAATCAATCATTTTTCCAGGGATGAAACTGTATCAATGGCTCAATCAGCAATCGAAAATTACTT TATGCAAGGAAAATCGGCGTCAGAACGAATGAATAATGCGAAATC Found at i:10878400 original size:7 final size:7 Alignment explanation
Indices: 10878388--10878402 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10878378 GATTTAAACA 10878388 TTCGAAT 1 TTCGAAT 10878395 TTCGAAT 1 TTCGAAT 10878402 T 1 T 10878403 CCCGGTTTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TTCGAAT Left flanking sequence: Indices 10877888 -- 10878387 TCCGGCCCACTAGGCTCAGAAGAGCAGTATATCATGTTCCTTTTCTCTTTTTTTTTGCTTGCTGA CTCAAGTCAATCAGTATTTAGGCAACAAGGACGAGAAGGACTTTGAATATTTGAATGCGATGAGC ATTTTTAAACTTTTTTTTGTTTTTTTTTCATATTATCGCTCTCAGGAACAAGAGAATTTCGAACT CTACAGGAACTGGATCTCAATATTATGGGGACGCAGAACGCGCTCCACGGCCAATTGGAAATGCC CCGCCCCGGAACCATGGGTCTCGTTAGGTGTTTGGCGAGAAAACCGGGAATTCAAACTTTTCCTA ATAGTCTCGTTTATTTTTTATTATATTTTCCGTTGTTTCAATGGTTTTTATGCCAATATTGATAT AATAAAATTCAAAAACTTCATATGAATTTTTAAAACATCAAGACCCATATAAAAATTACTAAAAC CAATGTAAAACATATTTAAAAAATCGTCGAAAAATGATTTAAACA Right flanking sequence: Indices 10878403 -- 10878902 CCCGGTTTTCCTAATATTACCTAACGAGACCCATCCTACTGGGGCGGATCGTTCCGTTGGCCTTA GAGCGCGTTTACGCGTAGACATCAAAAATGGTCAAGATCAAAAATTGTCAGAGAACCCTCTATAT AAGTGTCAGTTTTTGTGTCATTCTTCTATGAATTTTGAATTTCTTTGCACTTGTACTTTTCAACT TTCTCTCTTCGTTTTGGCAGAAACTGAAAAAAAAAACTTTTTTCTACAAAGTTTCGTACTTTAAT AAAGCTTTCAAATATTTGTATTAACCCACGTGTGGGCGTTCGAAATTGCTCTAAAAGTTCTAAAT TGTACTTGCTTATTAAAAATGAGTTTGGACAAAAAATCCCCGCTGGCGCTGCTCCACCTTTACAT GAGCACGTGAGTTCCTGTTCGACCCCTCATCATATTTTAATCCAAAACCGTCACGCGCAAATGGT ATAAAAGAGCCATGAATCTATCAGGATGGGTCTTGAAGCGAAAAG Found at i:10878573 original size:7 final size:7 Alignment explanation
Indices: 10878561--10878574 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10878551 CATTCTTCTA 10878561 TGAATTT 1 TGAATTT 10878568 TGAATTT 1 TGAATTT 10878575 CTTTGCACTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): TGAATTT Left flanking sequence: Indices 10878061 -- 10878560 AGGAACAAGAGAATTTCGAACTCTACAGGAACTGGATCTCAATATTATGGGGACGCAGAACGCGC TCCACGGCCAATTGGAAATGCCCCGCCCCGGAACCATGGGTCTCGTTAGGTGTTTGGCGAGAAAA CCGGGAATTCAAACTTTTCCTAATAGTCTCGTTTATTTTTTATTATATTTTCCGTTGTTTCAATG GTTTTTATGCCAATATTGATATAATAAAATTCAAAAACTTCATATGAATTTTTAAAACATCAAGA CCCATATAAAAATTACTAAAACCAATGTAAAACATATTTAAAAAATCGTCGAAAAATGATTTAAA CATTCGAATTTCGAATTCCCGGTTTTCCTAATATTACCTAACGAGACCCATCCTACTGGGGCGGA TCGTTCCGTTGGCCTTAGAGCGCGTTTACGCGTAGACATCAAAAATGGTCAAGATCAAAAATTGT CAGAGAACCCTCTATATAAGTGTCAGTTTTTGTGTCATTCTTCTA Right flanking sequence: Indices 10878575 -- 10879074 CTTTGCACTTGTACTTTTCAACTTTCTCTCTTCGTTTTGGCAGAAACTGAAAAAAAAAACTTTTT TCTACAAAGTTTCGTACTTTAATAAAGCTTTCAAATATTTGTATTAACCCACGTGTGGGCGTTCG AAATTGCTCTAAAAGTTCTAAATTGTACTTGCTTATTAAAAATGAGTTTGGACAAAAAATCCCCG CTGGCGCTGCTCCACCTTTACATGAGCACGTGAGTTCCTGTTCGACCCCTCATCATATTTTAATC CAAAACCGTCACGCGCAAATGGTATAAAAGAGCCATGAATCTATCAGGATGGGTCTTGAAGCGAA AAGTTCCGAAAGGCTTTCTCAATCTAGTCGGAAGTTGAAGCAAATTTGTTATAGTCTTATTATTT TCTAAATTCAATTTTTCGTGGTGAGACCCTTCAATTCCCCGATTGTCGACCAAAAGTTCAATTTT TACAGTGTTATGTCTCTTTTAACAGTCCTGACAATTATTTTTTTC Found at i:10880097 original size:7 final size:7 Alignment explanation
Indices: 10880085--10880099 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10880075 GCTAGCGTCC 10880085 CAAATGA 1 CAAATGA 10880092 CAAATGA 1 CAAATGA 10880099 C 1 C 10880100 CAAAGCTTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.53, C:0.20, G:0.13, T:0.13 Consensus pattern (7 bp): CAAATGA Left flanking sequence: Indices 10879585 -- 10880084 TTTTTAATAGCGATTTTTCTCGAACAAACACACTATCAAGGTTTTTTTCCGGTCATAGTTTTCCT CTTTTCATGTTTTGTCCCTTGTCTGCCTGAAAGCCGGTCTATTTTGTGATTTTTGGCTAAAAGTT TGGTGTTTGTGCTTGTGTTTGGCATTGGGCCAAGGCTTAGAAGTAGGCTTAGGCTCAGGCTTAGG CTAAGGCGTAGGCTTAGACTTAATATTTGGCTTAGGATTAGGATTAGGTTTAGGTTTAGGCTAAG GCTCAGGCTTAGGCTTAGTCTTAGGCTTATGCTCAGGCTTCTGCTCAGGCTTAGTCTTAGACTTA GGCTAGTCTTTTTTGTCCCTTGTCTGCCTGAAGGCCGGTATGAATATTTTGCAACAGTTTCTAGC GCAACAAAGTTATAAATAGCTATAAACTAATCCATGAAAATTTTATTCGAAAATTGCAAAATTCC TAATCTAGATATCCATTCCCACAGCTGGTCGGTCAGCTAGCGTCC Right flanking sequence: Indices 10880100 -- 10880599 CAAAGCTTCTCGATTCATGCAAAAATTTGGGTAAAAAGAAAAAGGAGAAGAAGAAAGCGTGAGCC TCTCGAAAAACGTCGACAAGCACAACGCCACACAAAATGAAATTTGGCGCAGCTCGAATGGAGAA TTTTTAGACTTTTATGTTCCATTTGTTCCGTTAACCATTTGAGAGATTTGCTGATATAGAGATTG AAAAGGTGGAATGTACCTTTAAAATAATTGGGCGGTTACTGTAGTTTTATGCTTTGTGTGGATGT AGAGTAGAGACAGTGGGAAAGAATTTTTTTAAAAATTATTTTCAAGATGGTTGCTAGAAAATATT GAAGGAAAAGTAGAAAAATGTAAATTAGAACAATATTGTTAAAAAAGATTTCCGAAAATTTGTCA AATTACCAAAACCTTTAGATCATCTGAAAAATGTAGGTTTTTAAATACAAGTTTGATAGTAAGAT TTTCATTATTTTTAACTCAAGAAAAATCAATTTTTCGAATTTTTT Found at i:10882324 original size:6 final size:7 Alignment explanation
Indices: 10882308--10882323 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10882298 TAGATAAAAC 10882308 AAATAAA 1 AAATAAA 10882315 AAATAAA 1 AAATAAA 10882322 AA 1 AA 10882324 TTTACAATAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12 Consensus pattern (7 bp): AAATAAA Left flanking sequence: Indices 10881808 -- 10882307 CAAGTTTCATTTTCAGATGGAATTTTCCAGCAAGGAATCTCCTCTCGATGTGCCTATACCGGAGG TGATCGTCAAGTTTGCCAAAAGAGCGAAGGAAAATGTCAGGATATTTCATTTTATGATGGAATGA AAGGAAATGTGAGTGGAGCATAATGGGTCTCGCCACGCAGACAACAAGTTACTGTAGCTCGTGTC GATTTACGGGCCAATATTTTTCAAATTAAATCCATAAATCGACACGAGTTACAGTAGCCTGTTGT CCGCGTGGCGAGACCTATGACATCTACAGTAATCCCTATACATATTTTACTTGCAGTTTTCATTC TGCTGCTGTAAAGAAAACAAGTGCAACGTGGCCACTCAAACCGAATTAAACTCGATATACTCAAT GAATTCAAGATCTGCACGAAAAACCAATGGCTCATATGGTTACCCTCTTATTATTTTAAATGTTA TTTCAGTTTTTGCTCTAGCGTTAATATTTGGATTTTAGATAAAAC Right flanking sequence: Indices 10882324 -- 10882823 TTTACAATAATTCATTTTCGATTCTAGTGATATGGGAGTGAGATGCATGCATGTAAATACAATTC AGTTAATGGAAAGTGGGTTAAATTTAAAATGATCATAATACAAGAACAATAGAAATTAATAAGCC GGTGTGATACGGCTAAACTCCTGGATCATAGCATTATACTTTTGAATGAATCCGATCGATTTGAA GCGAAGGCCTAGCGCGGCTCGATGGTACCACTTGTTGACATAAGGTTCGATCCAACGAAGAATGA CACGGTAAATGAAGAGATAGAGAAGAACTGAAGAGACGGAGAGACGACGTTGCAGACGAACGAAG ACGCATGATTGAAGAATTAGTGATTTGGTGATTGGAGATCCACGGATAAAATGCATCAAAGCAGT CTCAATGGAAACTAGAGTTCCTGACTTGGAGCATCCATCAATGCACTGAACAATTGTAGGTGTGG AGAGTTGACGAGCTCTGTAAATTGAAATTTGATTGGTGTTGAATA Found at i:10883323 original size:7 final size:7 Alignment explanation
Indices: 10883311--10883327 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 10883301 ATTGAATTTT 10883311 TTTCAAC 1 TTTCAAC 10883318 TTTCAAC 1 TTTCAAC 10883325 TTT 1 TTT 10883328 GCTCACTATG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53 Consensus pattern (7 bp): TTTCAAC Left flanking sequence: Indices 10882811 -- 10883310 TTGGTGTTGAATAGATAAAAAAACCCACTTTCTCAAAACGCGGAATGGCCAATGCACATCTCCCA AATATTGCCAATCCCACTGCCAGTGCTCCAAAAAGAGTTCTTCATCGAATTCAGCATCCAAAAGA TTTCCGCCAACTTTTTGAACTTTCAATTTAGTGATGGTGAACAATGGATCTGCCTTCGAGTCAAC CTTCATACAAGTAATATGGAATGATCCAAAACGAAGAGATTCATTCTCAGCACGAGGCCAATAGT ACGGACAGTGATTACGATTCGCCGAGTCGAGTGGACCAAGAGTTGAAGAATCAACTGCTGAGTTG AGCATCACGATGAATTGGCACTTCTCTTGGAAGACCATACGCCAGAAATCTTCTTGAGTGTTCTT CAATGGAGCCTGTGCACAGATGAATGTGTTCAGTAGTGGTCCTCCTTTGACATAGTTTGCATGAA TGAAATCAGTTGTTCCACTGAAAATTTGGATTTTGATTGAATTTT Right flanking sequence: Indices 10883328 -- 10883827 GCTCACTATGTACTCTTGGCTGTATACCCTTCTTCCTGCAAAAACTCGTGTTCATCGGAGAACAT TCCATTTCTCAGTTCATTTCGATCATCAAGCCGGCCTAAACCATCATTCAGCTTGACCCTCGAAA ACTCTGCACAAGGTACCATTTTACTGCGAGCTTTCGTCAGGTAATTCGCGTTGAATGCAGTTTGC AATGATTCCTCATCTGACAACTCATTGCTCACAAACATTCGATCGAGCCGGTTGAACTCCTGCAC AAACTCTGTGAGGTGGCAACTGAACTTCCCCGGCTCAACAAGCAGTGACCATTTCACTTTGGAGG ACATCTCTTCAGAAAACTTGGCGATTCGAGCAGCCACCATGGAGACATGCTCCGGATTCAATTGA CCCCAATTGCAAAGCGGATCGCTCTGGAAATATTTTAATATTTTTCTAGTAAATTTGAAAAATTA TAAAACCATCTTATTCTGATAAAACTCCGCCGCTGCTCTCTGAAG Found at i:10883759 original size:8 final size:8 Alignment explanation
Indices: 10883746--10883761 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10883736 TCGCTCTGGA 10883746 AATATTTT 1 AATATTTT 10883754 AATATTTT 1 AATATTTT 10883762 TCTAGTAAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (8 bp): AATATTTT Left flanking sequence: Indices 10883246 -- 10883745 TTTGACATAGTTTGCATGAATGAAATCAGTTGTTCCACTGAAAATTTGGATTTTGATTGAATTTT TTTCAACTTTCAACTTTGCTCACTATGTACTCTTGGCTGTATACCCTTCTTCCTGCAAAAACTCG TGTTCATCGGAGAACATTCCATTTCTCAGTTCATTTCGATCATCAAGCCGGCCTAAACCATCATT CAGCTTGACCCTCGAAAACTCTGCACAAGGTACCATTTTACTGCGAGCTTTCGTCAGGTAATTCG CGTTGAATGCAGTTTGCAATGATTCCTCATCTGACAACTCATTGCTCACAAACATTCGATCGAGC CGGTTGAACTCCTGCACAAACTCTGTGAGGTGGCAACTGAACTTCCCCGGCTCAACAAGCAGTGA CCATTTCACTTTGGAGGACATCTCTTCAGAAAACTTGGCGATTCGAGCAGCCACCATGGAGACAT GCTCCGGATTCAATTGACCCCAATTGCAAAGCGGATCGCTCTGGA Right flanking sequence: Indices 10883762 -- 10884261 TCTAGTAAATTTGAAAAATTATAAAACCATCTTATTCTGATAAAACTCCGCCGCTGCTCTCTGAA GCACTGAGCTGCAATCAGACATCGAAGGGACAAGCCGATCACGGAGCCAACCTGCCATTGAGCTT CTGAAAAATTAATTCATTTTGCTCGATTTATTCTACGAAATTATTTTTACCCATATCTATGAGCT AGCTCATCATGATTAATTGTTGGATATTCCTTCGCGTTCATCAACTTCTCGACAAGCAAAATTCT CGTCTCCTCATCACAAATGATCCCATCGACACGGAAAAGCTTCTGGGCGATGAATGTTTGCAGTT CTTCGAGCTCATGCTGCTCAACACGCTCCATTAACAGCTCTTCTTCCGATTTCTGTCCACCGAAC CATCCACTTTTCTTTTCCGGCTGAAAATTATTTATACTGATTTTTTAAAGAATTTAATTACTCAC AGCTTTTGGTGTCAGATGACCTTTTCGTCGATTGGCTGAGTGGAC Found at i:10887263 original size:8 final size:8 Alignment explanation
Indices: 10887250--10887267 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10887240 CCTGCGCCAC 10887250 GAGAGAAA 1 GAGAGAAA 10887258 GAGAGAAA 1 GAGAGAAA 10887266 GA 1 GA 10887268 AGGTGACGGT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00 Consensus pattern (8 bp): GAGAGAAA Left flanking sequence: Indices 10886750 -- 10887249 GCATTTGCAAGGGATATTGAGTTAAGTGGCTACAGGATAGAAGTGGTCGACGCACCTAATTAGTG CTGTAAGGGTACTGTAGTAGTACTGTAGATGTACTGTGGGATTACTGTAGTTTTACTGTAGGGCT GAAGGGGTACTGTAGGAGTACTGTAGTTTTAGAAAAATGAATTTCTGTATTTTAAAGGGGTATTG GGATTGGGTTAGTAAGTAGTACTGAAGTGGTACTGTAGATAAAAATTCATTTAATATTGGAATGA ATCTTTCTTTTTTTTTAATCCGTAGACTTACCATAAAACAAACTTCACAATTGTTCCAAAACCAT GTAGTTTTGTATTTTTCTCTCCCAAAATCCGTCAGAAATTCTATGACCGGCTACCACTACTATTT CGTCATAATGTTTCTTCTCGAAACGCCATTACATCTCCGAGAAGTCGAAACGATTTTAGTGGGTT GTTGTTCGACGAATTTTGTTTGGTTTCTTGGGGCGCCTGCGCCAC Right flanking sequence: Indices 10887268 -- 10887767 AGGTGACGGTCACTATATTTTGTGTAAGGTCACTCAGTCATCATCAGACACACAAATTCGTAGCC AATTCCAAAACCAAAACCCGAAATGTTCTCGATTTTGTATGTTGTGGGAGTGCTGTTACAACTCA TGGACCTGTTAATTTTACTAGTATTACGGTTAATTCGTATATAAAATAGAAATTGGTATTTAGGC AGTGTTTTTTTTTGAATTCAGTCTTGATTTTTTTAATCGAATTTTCATTTGAGACATTTTTTTGA AACTATTAAACAAAAAAGTCTGTTAAAATCTGCTATGCTAGAACAAAACTGCCAATTTTTAGCCA ATTTTAGCAAATTCAAATGCAAAGAAAAAAATATATTATGTCCTAAAATAGGCTCCACCCAAATC TTGGCTCATATGAGAAAGTCATCTTTAAATAAAGCTGATAGTTTTTGCAACTTTTGAAATTTAAT TTTTATCACTACTTGGAAAATATGCTAACAACTTTTCAGCATGCG Found at i:10893428 original size:7 final size:7 Alignment explanation
Indices: 10893416--10893431 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10893406 TGGAACAGTC 10893416 TGGAATT 1 TGGAATT 10893423 TGGAATT 1 TGGAATT 10893430 TG 1 TG 10893432 TTAGATGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44 Consensus pattern (7 bp): TGGAATT Left flanking sequence: Indices 10892916 -- 10893415 ATTTATGGAACTTTACATGGCAAAAATGTTCGCATTATCTCTGACTCTCTGCGTATCGTTATCTC TTATTCACGGACTTATAGTTATTCCAGCACTTTTATCAGTTCAACATCACATAGTTCACGCTGTG AAGCGATGTTTTGGAAGGAATTAGATTGATTGTTTGATATCTTAAGTTTTAAAAATTTCCAACTT TCAATTTGTGTTGCTTTTTTGAATACGGGTTATTATGAACTTTATTATGCGTTTTCTGAATAAAA AATAAATCAATTTCTTGTAAAAAATTCATTGGGAATTTTTATATTTTCATACTTCCATATAGTCA TTCAATATTGTACATAACTAATCATGCCCACAATTCTTTTAAAGATTTCATATGTTCCTCCTGAG TTTCCACCTTTGCAGTTATCCGATTTATGACTCGTTTTCGATTTGAACCCACTTGATTGATACGA TATATAAGTAAAGCTGGCAAGGAGACCGCTGCGAATGGAACAGTC Right flanking sequence: Indices 10893432 -- 10893931 TTAGATGAAATTATTGGAAAATTATGTTTTGGGGAAACTGAATATGCTCTAAAACATTTTCCAGA AAAATGGCTATACTCAAAACTTTAATCCATGGTTTTTTGTTGAGACTTGACTTCGATGTTTTAAA TGTTTTCTTATGCATATTTGGGTAATTTTAAGTAGAATCAAAACCAAACATGATCTCTTAACATC CACCAAAAAGTATTTAAAAACTCACATAAGCCCACCAAACCATATTATGATAAATAGAGATGGGA ATCATTGATTTGTGAAGTCTCAAAGTCAACACCATTGTCGAGTAAAGTGTCAATCCGAGAAACTG TGACGCAGCAATATATGAGATGATACGAGTTGAGATGAGTGCTTCTCGTTTTTGATATCTTTGAG TCACATAGAAACGAGTTCTGCAACTGGAAAAGGTTAATATTTTTCTAGCACTGTTAGAGAGTTTG AAACTTTAGCTCACCCTTTCTCCAGCTTTTTGTTTGCATATATGA Found at i:10894720 original size:7 final size:7 Alignment explanation
Indices: 10894708--10894721 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10894698 ATTCTGAAAG 10894708 AAAATAA 1 AAAATAA 10894715 AAAATAA 1 AAAATAA 10894722 TTTCAACTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAATAA Left flanking sequence: Indices 10894208 -- 10894707 CGACCTACATACCAGGCAGGCAAGTTTCAATGTTTTTTTCAAGATGGTCATTGATTTTTTATAAT GCGCGTGAGGTATTCTCCAATGAAGTTTTAATTAATTTGCATCAATATTTATATAGAACTTTCAG AATAAAATTGATAGAATGTGGTTTGTCACACATTTAAATACAACGCAAACGGAAAGGTAATCCTT GACCTTTTTTGTTAATAGAAATTCTAACTTACCACAAGAACTGACAGAATAACTCCTGGAAGTGC ACCCATATGTGAGTAGGATTGTGGAATTATTGTCGCCAAAAGTCTGTAATTCTTATAAATCTCAC AGTATACAGCTTCAAGTCTTACCTATCTACAGTCAACCCGAATTGATTAAAGTTGACACCCGCTA TTCCAAAAATGAGCACGTGATTTTGAAATCGACACTCTAGAGTTGTCCTCATTATTTCGCATGGC TTATCGCTTAATGTGAAGCTCCGGATTAAGGCAGTATTCTGAAAG Right flanking sequence: Indices 10894722 -- 10895221 TTTCAACTTTCAAAAAAATTGGAAAAAATTACCTGAATAACCATGAAAATAACCGCATGAACATT TACAAATAACAAGCTAGTATAGAGTAAAATTTTGGTAGAACTGTGAAAAATTGGTCGTATTTTGA GAATGAACAATGCTTTGTAGGTAAGAATAAATGTGATAATTGCCACTATTGTCATTATAATTACA TTAATTCGTAGTAATAGAGATGTTTGGAGTATCATTTGATCTTCTGTTGCACATTTTGAAGAGTT GGCAGTAATTGGGCCCATTTCTGAAATGAGTTTTTAAAGATAAAAGAGATGAAGGGTGAATTGAG AATCAAAAGTTTGGAATTAAAGATCTATGGATTAACGTTTGCAAATTTTAGAATTACATCCCCAA CGGAGGGAATTTGTATCAAAAAATCAAAATGACGAGGAACTATATAACCTTTGAAGAATAAAAAA ACCAAAATAATTCAACTTATTATTTAATAAAATATTCGAAGAACA Found at i:10895403 original size:8 final size:8 Alignment explanation
Indices: 10895390--10895405 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10895380 TTAGGGACAC 10895390 GTAGGCAG 1 GTAGGCAG 10895398 GTAGGCAG 1 GTAGGCAG 10895406 CCATTTTCAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.12, G:0.50, T:0.12 Consensus pattern (8 bp): GTAGGCAG Left flanking sequence: Indices 10894890 -- 10895389 ATTGCCACTATTGTCATTATAATTACATTAATTCGTAGTAATAGAGATGTTTGGAGTATCATTTG ATCTTCTGTTGCACATTTTGAAGAGTTGGCAGTAATTGGGCCCATTTCTGAAATGAGTTTTTAAA GATAAAAGAGATGAAGGGTGAATTGAGAATCAAAAGTTTGGAATTAAAGATCTATGGATTAACGT TTGCAAATTTTAGAATTACATCCCCAACGGAGGGAATTTGTATCAAAAAATCAAAATGACGAGGA ACTATATAACCTTTGAAGAATAAAAAAACCAAAATAATTCAACTTATTATTTAATAAAATATTCG AAGAACACATCTCGGGGAAATTATGGATAATGTTTAAAATCGTGGGAAGACACTTTTTTGAACTA CATAATAACTTCTGAAAATTTTAGTCTCAATTTTTGAAAATCCTGGAACCAAATAAAACGTTTTC AACCAAATTCCACTTGTTCAATTTTTTTTTTAGAATTAGGGACAC Right flanking sequence: Indices 10895406 -- 10895905 CCATTTTCATGTCTGAAAAAGTTGCAAAAGATTTGACTCTATCAGTCTATGTATAAAGACTCTAT AGAAAAATAGAGTCGAGTTTGAATTTCATGGAAAAATTAGTCATATGTAGTAGCAAGCAAAACTA CCAACAAAAGAAATTAATAATAGTGTTCAACGTATATTTTGTATAGTTTCAAAGGCTTACTGATT ATACATAATCACATTTTTTAAAGATTTCGAGGCTTTAATAAATCCTTTTCTAAACTAGATTTTGA GAAATGATGTACGAAAAAAGTTGAGAACGTCAAAACCTGCTTGAAACTTTTGGAGGCCTCATGAA TTTTGCATGATTTGCATCCCGCGAAAACGTCATTTGCTTCTGAGGTCTCAAAGTTCTTGGCAAAA TTTGAACTATAAATGTTTATTTTTCAGTGGTTTGTTCCTCATAAAACTGAATAAAAACAAGATTT ATAACCTTATAACCCTCCATTCAATATGGGAGATCATATTTTTCT Found at