TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:3684712 original size:8 final size:8 Alignment explanation
Indices: 3684699--3684714 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3684689 ATACCTCCTT 3684699 TCAATAAA 1 TCAATAAA 3684707 TCAATAAA 1 TCAATAAA 3684715 ACTCTAAGGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25 Consensus pattern (8 bp): TCAATAAA Left flanking sequence: Indices 3684199 -- 3684698 AAAGGTCTTTTTCAAATTACACAAGTTCAAAAATAGTCCTTACAACATCTTCTTTAAGTAACATG TTTCAGAGATCGGCCCACAGCTCATCAGACTCGGAAAGCGACTTCCAAGACACCCAGTGTGAAGA CTCTCAAGACTCGGACTACTTCCCGGATACCCAGGAGCAGCGAGACCGCCCCGCGGACTTCAGGA TTCCAAAGAATGCGGCCTACGATCCTCTAGACTTAAGCTATAATTGAAAATCATCAGCCTCATAC CCGAATCTATTCCACTGCATAATATGTAGTCATAATGAAACATTGAATTCTGTAAAATTCAATCT TGAAGTTACAAATCAAATGTCAACAGTCAAAGATTTTCAGCGGCTGTACAAAAATTTCAATAAAA TTTACAAAAGTTGTTGCCCAGAAAACTAGAGTTTCTTCAGTTTAAATATCAGTGTATTGCGAAAT ATCCGAATATTTAATCGATTTTTTCATATTGCGAAATACCTCCTT Right flanking sequence: Indices 3684715 -- 3685214 ACTCTAAGGTATTGCAAAATACCTACCGACTCCGCCCATCCAAAGATAAGACTTTTCTCTCAGCA GAACACTTTTCTCACACGTTCCAGAACATCTCTCTTATCACCTTCCATTTTGTTACTATGTGCCT GTCCGCTGTGACTCATCAATATGAACTGATCAAAGTGGGAACTTTTGAAATTGAAATGGACGATG ACGTCATAGAATTTCTGGAATTTTCCGAAGATGAAGAATGGAGCCCAGAAGTCTACGAGAAGGCG TTTGCAGACGTGGAGCGATGGATGGAGGAAGGAAGATAATTCTGATAGATTCTATAAACTTTTTC GAATAAATTTTTCATTTTTATTACACAACTTTTGATTTTTTTTTTGAGAAAAATATGCAAAACTA AATCGAAATTACACTGGAGTTAAAAAAGTGTAATTGAGCAGTTGGCGGACGAAGTAGAGCCCCCT CAATTTGAATAACGGTCACAATTTTCAATGGAAATGTTCAATCTC Found at i:3685252 original size:8 final size:8 Alignment explanation
Indices: 3685239--3685267 Score: 58 Period size: 8 Copynumber: 3.6 Consensus size: 8 3685229 CTTAATAGGC 3685239 AGGCACGT 1 AGGCACGT 3685247 AGGCACGT 1 AGGCACGT 3685255 AGGCACGT 1 AGGCACGT 3685263 AGGCA 1 AGGCA 3685268 GGCCTACCAA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 21 1.00 ACGTcount: A:0.28, C:0.24, G:0.38, T:0.10 Consensus pattern (8 bp): AGGCACGT Left flanking sequence: Indices 3684739 -- 3685238 ACCGACTCCGCCCATCCAAAGATAAGACTTTTCTCTCAGCAGAACACTTTTCTCACACGTTCCAG AACATCTCTCTTATCACCTTCCATTTTGTTACTATGTGCCTGTCCGCTGTGACTCATCAATATGA ACTGATCAAAGTGGGAACTTTTGAAATTGAAATGGACGATGACGTCATAGAATTTCTGGAATTTT CCGAAGATGAAGAATGGAGCCCAGAAGTCTACGAGAAGGCGTTTGCAGACGTGGAGCGATGGATG GAGGAAGGAAGATAATTCTGATAGATTCTATAAACTTTTTCGAATAAATTTTTCATTTTTATTAC ACAACTTTTGATTTTTTTTTTGAGAAAAATATGCAAAACTAAATCGAAATTACACTGGAGTTAAA AAAGTGTAATTGAGCAGTTGGCGGACGAAGTAGAGCCCCCTCAATTTGAATAACGGTCACAATTT TCAATGGAAATGTTCAATCTCACTTTGGCACACTACTTAATAGGC Right flanking sequence: Indices 3685268 -- 3685767 GGCCTACCAAACAAACCTCAGATTTCGTAATTTATAAAAAAAGACTTTTCTTATCTTATCACTAG TTGTGCCTCCAAAGAGTCTCCCTTTTCTTTATTTTGTTTCAGTCTCTGCGGCTGAAACTTGGACG CCGCCCGCCCTTAAAACAGGTGTTGTTTTGTTTTGGCAGACGGATTGCTCACTCTTAAAATTTTA TTTAAAGCCGGGTCTTCTATGTTTCTCATTTTCGCTTTCTTGAATTTTAAATGATTATTTTTAAA ATTTCAGAATGTCCGATCAGTTTGAGTTTATCAGTTTGGAGCAATTGGAGCAATCGGAGCCCACC AAAAAACTGATTAAAAATTCTGAAAATCGCGCTGAAAATAATGGCTGGAACTCGAAAGTTTATGA GAAGGCTTTCAGTGATGTGGAGCAGTGGCTGGAGAAGGATCGGCGGAACTCTACCAAAAAATAAC TGAATTTTTGTTTCGAAATTCCAATTTCAAATTTCTTATCTTATC Found at i:3695387 original size:10 final size:10 Alignment explanation
Indices: 3695372--3695391 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 3695362 TATAGAACTT 3695372 GTTTCTCAAA 1 GTTTCTCAAA 3695382 GTTTCTCAAA 1 GTTTCTCAAA 3695392 AATTTCTAGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40 Consensus pattern (10 bp): GTTTCTCAAA Left flanking sequence: Indices 3694872 -- 3695371 GGCAAGTTTTCTGGAACTGAAAATACATATGTCTAGAAAATTGGATCTATGTAACTAGATTTATG TTCAAGATATCAAAATGACATACAGGGTGGCCCATAACTATGCGGACCGAGTTGCTCTCACGAAT ATTTGTTTTTTCACGCCTGACAAATTTATAGTGATTGTTTTATATGTCCATTGATAGCTGACATT CTTTCCTATTAGTTAATTTCAAAAAATGTTGGTTTATTGAACTTCGCAATCTAGGCAGAGTCGTC AAACTAGCATCATCTCCCACACTGACGACTTTTTGGCACGAAACATATTTTTGAGTCTGGAAGTT TCAAAACCGATTTTTTATACAGTAATGTATATATATTGGATGCAAAAAATATTTTTTCATAAATG TTGACCTATATGGAATTTGTTCCATATAATTCCAGCTCCTGCTGGGTTCCACCCTGTATAATTCT CCAGAATTTTCCCGAATTTTCTGATAGCTTTTTTTTATAGAACTT Right flanking sequence: Indices 3695392 -- 3695891 AATTTCTAGAACGAAAAGTTTGTTTTGAAAAGTTCGATTCATAGAAATCATAAATTGAACTATAG GATGTAGATTCCATAGCTCACCATTTCATTGACAAGGATGTTGATGAAAGTCGGACCATCGAAGT TGTTGCTGAGTTGGTATTATTACTTTAAGTTACGGAGCACAGCAAAATGCGACCGTCTCCTAGCG GTTCATTTGATCAATCGGTAGATTTTTTAATATGAGTTTGAATTGAATTTATTGAACTTTTTAAT GCAATTTACAAATTGAGTTAGGCGGATTGAATTCAAAGTTTAAACTTTTTTAAACAAAAAAACCT TTTTTCTAGTTAAAAAAACAAGAAAACCAGAATTTGAATTCTTGCAAAAATTGCATGACGTCAAA AAAATGCAAAAAAGTAAAATATACCTTGTACTCAGAAGCACAACAACATACATAAGTGAAAAATG AGATTAGCTTGTTTTTGTTTTTCTTTTGAAAAAATCAGGTTGAAT Found at i:3698181 original size:7 final size:7 Alignment explanation
Indices: 3698169--3698182 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3698159 GACTTTAAGA 3698169 CAAAAAT 1 CAAAAAT 3698176 CAAAAAT 1 CAAAAAT 3698183 GAACAAGAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): CAAAAAT Left flanking sequence: Indices 3697669 -- 3698168 TTTTTATTTCATAAAACTCTTCAGCATAGTCAAAATTACCAGAAAATGCTAAACAAAGCATAATA TCTTGTACGGAAGTTTTTTTTTTTATTGATAAAAATATATAAAAGCTGATTTTTTCAAAAATTCA AAAGTATGGGAAAATCATATGGAGTCATTCTTTTTTATTTCATAAAACTGTTCAGCAGAGCATTA TGGAGCACGTATCCCAATAAAATGCACATGATGGATAGAGTTTTAGAAGAGCACATAAGATAAAA ACTTGAAATTTTCTGTTTGCAAAAGCTTTGAAGAACACGAAGATTCATAGGCATTCTGAGAAGTG AGGCATGTAGAAAATTGATTTTTTTTTTTGAAATTTAATTAAAGTGTTTTTTCACCAATAGCATA ATCCAGCCAATTACCAGAATCATATATGTGTCTGCAATTTGGGACGGGAGAATTTGACCATTAAA TAGTAAAGTTGTAGTATAATTTGATAGAACCATCTGACTTTAAGA Right flanking sequence: Indices 3698183 -- 3698682 GAACAAGAGCTGTTTGCTTCTGACCCAAACGACTTCCAGGTATTATTTTAGCTTTGTAATAAAAG TTAAATCAGAGTTAATTTAATGTTCCAAAGAATATGCTTGTTTTCTGGATCTGAAAATATATGTC TAAAAATTGGTTGTTCGGAATTAGATACAGATAGGCGGCATCAAATTATCAGAGTCTCACACAAC TAGTACAATGTAAATTTATGACGTCTTTTATCAGTTTTTTTCCACTAAAAAAATAAAAATATTAA AGGAGAAAATTCATTAAGTATGTATATGTATGTTCAAATATGTTTTTAAAAAGTTCTCATGAAAT ACTTTTTTTTTTAATTTTTGTCTGAAATTAAAGCTAAACCATGTCGGAAAAATACAGAATCGTTT CAAAAAATGAAATCGCCACTTCATTTTGGCTTGAATTTGCAGTTGAACAAATACATGATGAAGCT GAAAATTATTATTTTTTATTTTTTGAATTTCTCAAAATCATACCC Found at i:3698658 original size:7 final size:7 Alignment explanation
Indices: 3698646--3698661 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 3698636 CTGAAAATTA 3698646 TTATTTT 1 TTATTTT 3698653 TTATTTT 1 TTATTTT 3698660 TT 1 TT 3698662 GAATTTCTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (7 bp): TTATTTT Left flanking sequence: Indices 3698146 -- 3698645 GATAGAACCATCTGACTTTAAGACAAAAATCAAAAATGAACAAGAGCTGTTTGCTTCTGACCCAA ACGACTTCCAGGTATTATTTTAGCTTTGTAATAAAAGTTAAATCAGAGTTAATTTAATGTTCCAA AGAATATGCTTGTTTTCTGGATCTGAAAATATATGTCTAAAAATTGGTTGTTCGGAATTAGATAC AGATAGGCGGCATCAAATTATCAGAGTCTCACACAACTAGTACAATGTAAATTTATGACGTCTTT TATCAGTTTTTTTCCACTAAAAAAATAAAAATATTAAAGGAGAAAATTCATTAAGTATGTATATG TATGTTCAAATATGTTTTTAAAAAGTTCTCATGAAATACTTTTTTTTTTAATTTTTGTCTGAAAT TAAAGCTAAACCATGTCGGAAAAATACAGAATCGTTTCAAAAAATGAAATCGCCACTTCATTTTG GCTTGAATTTGCAGTTGAACAAATACATGATGAAGCTGAAAATTA Right flanking sequence: Indices 3698662 -- 3699161 GAATTTCTCAAAATCATACCCATCCAGCGCATAAACTACTACATCAAGTCCCATTGTGATAAGAT TTGTGCAAACATGGCTCCGACAGTACATTGATGCTAGAATATTATTTAAAATCACCAAAACTGCA ATCCAATCTTGAAAACATGACTGTAAGAACAGGTAGACACGATTTTTGTTTCTTGTTTTTGAAGC TCGGGAGGAGAGGAGGTTTGAGGATTTCTGAAATTTTTTCATTTTTGAGGAAAAATCCCGCCAGT TGTCGGCTGCTTACCGATATCAAATACAGCTTGATAGCAATGGAAACGTTCAGGACATTTGTGAA AACTCCAAGTAGGAACACGGCCAAAAATAGATAATCAATAACTTGAACACTGCACTCAGAACTTG TATATCCAACATGTTCAAGGTCCACAGGGACGCGGCAATTATCTGAAATTTTAAAACTGAAAATG CCCTAGGCAGGCGCGTACCTACCTGGCAATCCGAGTAAAGTCGAG Found at i:3699809 original size:9 final size:9 Alignment explanation
Indices: 3699797--3699816 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 3699787 TTTTTTTTGG 3699797 TTCTGGTTT 1 TTCTGGTTT 3699806 TTCTGGTTT 1 TTCTGGTTT 3699815 TT 1 TT 3699817 GAAAACAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.00, C:0.10, G:0.20, T:0.70 Consensus pattern (9 bp): TTCTGGTTT Left flanking sequence: Indices 3699297 -- 3699796 GAAAGTTGTTTTTTTTTCGGTGCCGAGACTTGCCGAGAATGGTTGAATACCTTGCAAGTAAATAC CATAGCCCATCGCCTGATTGATGTAGCTGCTGAGAACAGCCGAACCGAATCCAGAGTAGCTGATG GAAATTTAAATTTTACTGGCCTATTAAATGTTTGGGGAAACAACAAAACTCACAAAAAGTTGATT GGTCCAACGTATAGAAGATAGGCGAAAAGTATGATAGAATTTGATATCGTTTTCGAAGAGCACAG AACGTAAAAACTAGTTTTTTGAAGTTTCAGGAAGAAGTAAAACATGTAGAAATTGATTAAGATTC CACAGAAAGACACCAGAAGCATGTGTGCTCCAACGAGACGGGTGGCGATCTCGTCAGTGTCCATG GAGCTTGACTGAATGGTTTTGGAGCTCGGGAAACCGGGAAGTTGTTTTATTTTTCTTTTCTTTTC TCACACCTTTAATTATCAGACTTCAATTTTTGAGATTTTTTTTGG Right flanking sequence: Indices 3699817 -- 3700316 GAAAACAAAATTTATGAAATTGGCACTATAGTTGAAAGCCTTCTGTTGGGCGAAATAACATCTCT GTTCAGCTTTCTCGAATTTTTATTAACATCCGAATTCAATTTACAATTGAATAAGTACATGACGA TTCTAAAAGCTTTTGGTTACTTTTTGAAAAAGTTTTCTCATTTCACATACCCATCCGCTGCATAC ACCATCACCCCGAAGCCCATTGTCACCAGGACTATACAGGTCCGGTTTGCACAGTAAACGTTGGA TCCAAAATTGTTAAGGATATCGACGACGACTATCCAATCTTGAAAACATGACTGGAGGAATAGGT AGATTCGGGATTTCCGCCGGTTTTGGAAGGATACAGAGGAGAGAAGTTTCGAGTATTTCTGAAAA TTTCTGGGTAGTGTCGGCTGAAACCTCAGCCCTTTTACTTGAAGCAGCCGATGTTTGGCGGGCCC GGCTAGCGTCGGCTGCAGTTTTGAAAAAAAAACAGAGACTTACCG Found at i:3702327 original size:7 final size:7 Alignment explanation
Indices: 3702315--3702329 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3702305 TTTTAGAGAA 3702315 GGCAATT 1 GGCAATT 3702322 GGCAATT 1 GGCAATT 3702329 G 1 G 3702330 CAAGTAGGCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27 Consensus pattern (7 bp): GGCAATT Left flanking sequence: Indices 3701815 -- 3702314 TGAGAACGCTGAAATAATTTTCTATATTTTTATTGTACATTTTCAGAAACCCTACCCATCCGCCA AATAAACCGTCACCCCGAATCCCATTGTCACCAGAACTATACATGTTCTGTCGGTACAGTAAAAG CCGGATATCATGTTGTTAACAATGTCCAGGACGCAAATCCAATCTTGAAAACAAGACTGTAGAAA TAGGTAGATTCGGTTTTTCTTCCGGCTTTGAGATGTGTTTGAGGAGAGTAGTTGTGAGGATTTCT GAAATGTTGACAAAGTTGAGTCCGCTGCTAACTCGTAGAAAACGTTATGTAATTTGTGGGCTGCG TCATCCAATTGCGCGGGCGGCAGACGAACTCAAAGACAAACCAATAATTTGTCGTCTGCTTCCTT TTTTGACTCATTAGAAAACCCCTAACTTGTCGGTGTTTTTCTGTATCAAAAAGGCTATTTGGGCA TTCCTGACTCGGAAGTAACTGTAGCTGATCCACGTTTTTAGAGAA Right flanking sequence: Indices 3702330 -- 3702829 CAAGTAGGCAAAATACTGTCAACCCCAAGACGATATTTCTATGAACCCGTAATATGTCGGCTGCC CACATTTACGCGATCATTGTAGGAACCCATAACTTGTCGGCTGCACCTACTCTAACTTACCGATA AAATGAACAACTTGATTGCTATAAAAACGTTCATAACATTAGTAGAAACCCCCAGTGAAAATACA GCGATAAAAAGTAAATTGATCATCTCTTAAGCACACGGAGGCCGAGTCCATGGTACATGACCAAA GTTCACATGCATACGACAGTCATCTGAAAAATTGATTTTGCTGGCAGCCGACAGTTTACGGGACA GCATACCTGGAAGTCCCGCCAGAGTAGAGAGCCACGCGGCAAAAATCCAGGAAATTGCTAGAGCT ATTACTGTAACTTTTGTACTACTATTTGTAGTTTTTGCGGCGGAAATCCAAACGACCAAGAATCG ATTCACAGTTATCATAAGCTGAGTTATAGGTCCTAAAAGAGCAGA Found at i:3703614 original size:8 final size:8 Alignment explanation
Indices: 3703601--3703616 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3703591 GAATGTTGAA 3703601 CTTAAAAC 1 CTTAAAAC 3703609 CTTAAAAC 1 CTTAAAAC 3703617 AAAAAACAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25 Consensus pattern (8 bp): CTTAAAAC Left flanking sequence: Indices 3703101 -- 3703600 ATAGAACATGTACAAGTTCATAAGGATTCCACCAAAGGATGTCTGGAAATTGAGCATTTTTGGTA AAAACTATTGAAACGAAGAGCACTATACCAAAAGCATATGGGCTCCAACGGTTTTCGTAGAAATT TCATCGACATCCATTTTGACTTTCGAAAATAAAGTCGACGCCTGCTAACTTCTGAAAATCCTCAA CAAACACCAGGAAATATAAGCTGGTTTTTGTTTTCCTTTTGATAAAATTTTCTCACAATTCTAAT TAGTTTGCATCACCTCATGGGATAAACAAATGAACACAATAACTTTTTTTTATATTTTGAAAGTG AAAAATATACGTCAGAAAAATTTTTGGAATAATATACTTAGAAGTACATGGGATTTTTGAGAGTG GTAGAACAAATAAACTGAAAAAATAAACAGAACACAAGCTCAAGCCTTAGCTTAAGCCTTAGCCT TAGCCTAAGCCTAAGCCTAAGACTAGGTCACACCTGAATGTTGAA Right flanking sequence: Indices 3703617 -- 3704116 AAAAAACAGTTTATTTTAAAAGTTACGAAGAAATCGGTGTCACTGTAATCGAAGTCTTGCTCACA GGTGCAGAATCTGGGCTGCTCTTCTTTGTGGAATTAGATTTTTTTATCAGAGTGGAGCCAGCAGT TGAAGATGTACATTAAGAATCTGAAAAGAAACAGATTAAAAAAAACCTGACTATGAGCATATACC TACCCATCCGTCAAACAAACTGTCACATCTAAACCCATTGATGCCAAGGTGGTGCAAACAAAATC AGAACAATAATAGAATGATAGAAAATTATTTGCGATAACTATCAAATGTATCCAATCTTGGAAAC ATGACTGGATAAAGAAGTATATTCGACTTTTGCGGCGGCTATTTGCTGTTGACGTGGATATCATA TCATATTCGATGATTTCTGAAACTGACCAATCAGCGACGTTGGTCACATCCTCTGTTCCTGATTG GTCGGCATTAGCGCGCAAATTCAAACTTACGGAAAAACAAATCAA Found at i:3704632 original size:7 final size:7 Alignment explanation
Indices: 3704620--3704633 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3704610 AGTATTAGAC 3704620 AGGCAGG 1 AGGCAGG 3704627 AGGCAGG 1 AGGCAGG 3704634 CATTAGGCAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.57, T:0.00 Consensus pattern (7 bp): AGGCAGG Left flanking sequence: Indices 3704120 -- 3704619 GATTGCAATCCAGGAATTCATTAAATTGGTGCACACCGCTATGCAAAAAACAGCGGAAATCATAA TAACTGTAAGTTGATTATTACAAGCCGTACTATGCATGCTGACGTGCTCGAAACTAAATGGAACT AGGCACTTTTCTGAAAATAAATTCAGGTATTCAAATATTTTTACAATAAGTTACTTGGCATGCCA ATTAAAGTTGAAAACCAGGCTGTAAAGATCCAGGAGAGTAACAGAGCAGCTACAGTAATCTTGGT ACTGTTTCTAGGGACATTGGTTGGGAAGAAGCATACCACTAGAAATCGATTAGTGGTTTTCATCA TGGGTCCTGAATTTCGAATAAATTGTGCTCTGTGAGCTCTACCTACCTTGCAAGTATATTCCAAA TCCCATAGCCTGGTTGAGGTATTTACTGAGTTTTGCAGAGCCAATTGAGGTGTAGCTGAAAGTTA GGGCATTTAGACTAACCTACAAATGCGAAATGGTAAGTATTAGAC Right flanking sequence: Indices 3704634 -- 3705133 CATTAGGCAAGCAGTAGGCATACAGTAGGCGAATGTACGCTAAACTTACAAGGCATGTATAGGCC CCACGAAAATCAAATATATCATTGACTCGAGTGTATTAGAAATTGTTTTTGAAGCACATAGAATA TAAAAACTGGATTTTCTATTCTTAAAAAGTGCCGAAACATGTATACATTTACCAATATTCCAATT GAAGCAGTCTGAATAATGTTCAATTTTTCTATAAATATTTAAGTTCAAAATCCAACTTACAATCA TCATGTGTGCTCCAACGCATCTGCTAGCGATTTCCTTAACTAGCATTGAGGCCTGAAAACGTGAG GTTTTCAAAGAAGTATATGACTGAAAATTGTTTGGGACTAACGTCTAAAAAGTGTGCGAGACATG AGAAAATGTGATTAAATTATTATTAATGTTTGAAATCAGCAAACCAACTAAAAATGACTCAAGCT AGCAATAAAGTATATAGAAACTTCTAGAAAACCTTCTGAATGTAC Found at i:3706305 original size:7 final size:7 Alignment explanation
Indices: 3706293--3706307 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3706283 GTATGCTCCT 3706293 TTTGTAG 1 TTTGTAG 3706300 TTTGTAG 1 TTTGTAG 3706307 T 1 T 3706308 GTGAGAACTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60 Consensus pattern (7 bp): TTTGTAG Left flanking sequence: Indices 3705793 -- 3706292 ACATTCTGTGCTCGTCGAAGTCCATCTCTAATACTTTGGTCCTACTGATCTATTTCGGTTATATT GGGCCTATCAATGCTTTGTAAGTTTATTAAGATGTTTGGGTGAAGCTCAAAAAAATTACAGTTAC ACCGCAATTGGGTCTGGCACGTTAAGCAGTTATCTGAATCAGGCAATGGGGTTCGGGCTGTATTT GCAAGGTACAGTCGACTTTCCGTCATTTTTCAAAAGTTTTTGAAGGCGCCTGAAAGGCAGGCATT CTTTGTTGTATCTATATGGACCTAGGACAACTATCTCCAGCTCTCTCGATTCACTAGTTTTATAT ACTTTCCAGGCCCCACAACCCAACTAATGATAACCATTAACCGATTCCTTGTGGTATGGTTTTCC CCGGTTAACACTCCAAGGTACAGTACACGGATTACTGTAGCCGCAATGGGAATCTCATGGATTTT CACAGTTTGGTTCTCAACTCTAGTTGGAATGCCGGGTATGCTCCT Right flanking sequence: Indices 3706308 -- 3706807 GTGAGAACTTTTGTTAAATACGTAGCTGGCATCAATCGAGGTTTCCCGATTCGATTAATGCATTG TTAATATCCTTAACACCTGTTTCAAAAACTAATCAACACACCAAAGTTGAATGCTCAAAAATTTA GGCTGAATACTTCAATTTCAGCTATCTGCCGTATCCCATTCCTATTCGATCATGTGCCATATCCC GACTATCAGGAAAATGATTTTAAATGCACTGACACTTTGATCACCTGCCTGGTATCTGGCTTGTT TTTATTGGCAATATCTACAAATTTCATGAACATTTTGATAGCTGTCAAGTTGTTTTGTTTGTCGG TGAGTTTTGGCTTAAAGCAGGTGAAACTGGATCGCTTCCCAACTATCCCATTCCAGAAATCCACC AGCTCCCTTTCCTCGGAAACCGCCAAAAATCGCCGAAAAATGAAGATCCGCTTTTTCCTCCAATC ATGCTTCCAAGATTGGATTTGTATGCTGGATGTGGCAATGAACTT Found at i:3711355 original size:9 final size:9 Alignment explanation
Indices: 3711341--3711358 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3711331 AAAAGTTGAA 3711341 TTACACCTC 1 TTACACCTC 3711350 TTACACCTC 1 TTACACCTC 3711359 GCTGAAATCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33 Consensus pattern (9 bp): TTACACCTC Left flanking sequence: Indices 3710841 -- 3711340 CAACTATCGCATAAATTTGAAACCAAAGTCAACGCCGAGTACCCGGAAAACTGTGAAAGTTGGCT TGATTAATAGTGAAAATTCACTACCTCCAGTGTCTTCCTAATTCAAATAAATAAATAAATAACAT CATGTTTTACCCCAACTTTGTATGTACAACTTGTTTAAAAAATCTAAAAATGTGAAAGTTAATTG GCGTTTTTTTATTTTATGTTTTTAAAGTTTTTTTTGCAAAATACTTTGAACGCAAAATTCAAAGA AAATATCCATTACCCAGATTACATTTTCAAAAAGCTTGTCGTAGCACAATCGAAATCTGATCCCT AATCCCCATGCACATTACATACGTCTATAATTATCATGCTCTATTGGAGTGGAAAAGGGGGAACT AATCTTCTCGTAATCCCTCTCTCCCCAAGGTGCTCAGTTGCCCATTTTGCTTCCCTGATTCTCCG AAAGATGGACGCTTCTTATTCTTCTTCTCGGCCAAAAAAGTTGAA Right flanking sequence: Indices 3711359 -- 3711858 GCTGAAATCCGTTCTCAAGTTTTTGAGTGTGAAGAAAAGGTTAGTGAATAGTGATTAAGCTTGAA AATAGACTGAAGAAAAACTTTAAAAAACCCGAATTTCAAAATGAGATTTCTTAAATATTCCTCAA ATTTATTCAAATTTGGAAGTTCAAAATATCCAAAAAAAAAGCGATAAAATTTGGCTAAAATAAAG GGACAATTTTGAGTATATTACAGTAACAAAAAACAATTATAAAATATTTTTTCAGAGAACAAATT CACATTCATATTCCCGAGCTCAGGTCTGTCAATGCTCTGCTACCATATGCCCACGAAGAGGTTAT CCTTGATAAATTTGAAATCATGATCCAGAACAGATCATATCTTTTCAAAAAGCTTGCTGAAAAAG CCCCGAAGCCTGAAGGTGTGGCTCGCCGGCGACCAGAATATGAATATGCAGAATATAATCGCCTT TTGGTGATGGACCTTGGTCCCCCATCCCTGTTTGACATGAATGAC Found at i:3714627 original size:8 final size:8 Alignment explanation
Indices: 3714614--3714629 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3714604 ACTCCTTTCC 3714614 AAGAAGCT 1 AAGAAGCT 3714622 AAGAAGCT 1 AAGAAGCT 3714630 CTCACTGAGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12 Consensus pattern (8 bp): AAGAAGCT Left flanking sequence: Indices 3714114 -- 3714613 CATATCAATATGCGATCGTGGACTAAGCAGCCGACACAATACGGGCCACCCGTCAAGTGTAGTTT TTGTTTTTAAAGTTTACAGAAGCAGCCGACATATCCCTGGTGCTTCAATTTTTTCAATATTGATG AGGCTTCTCAGCAACTGACACTTCCTGGCGGCAGTTTTACTGAAGCAGCCGACACTTTCCTGGCT CCCCAAATTTAAATACTCACACAGCAAAGAGCACGTAAGGAGAATCAACTCCAGGATAATAGGAA TCCCCAACCAACTAAAAACTCCGACAGTGAAGACCCCCAGCATCGGAAGAATTATGTAAATAGTT GAAAAAGTGCATAGAATCACGTCGAAAATGGAACAAAATAGGTGATTATAGAACAATGGCCACTT CATACTTTTCATTTGAACTGGAGTTTTTGTTAGGATAATGTAAAATGCGAGGATTTGAAGTGGTA GGGAAAATATTTGAATAAAATCAGTAGGGTACGCAACTCCTTTCC Right flanking sequence: Indices 3714630 -- 3715129 CTCACTGAGATTACATTTAGAATAATTTGTAGAATAATAGTTATCTATAGATGATATCATACCTG ATGAAATACTTTAAACTGAAATTTTCCTTTGCAGAGGAAAAAAACGAATCACACCAGAACTTTGA GTGATCATTCGATTTTTGAAAAGGTTCCAAATTGCAGGGTGAAAGTTTTTTATTCATATTTTCAT CACGTTTGAGTATAGTATAAACGCTTGAAGTTTCAAAAAAGACCTGCACCATATCATGCGATATT TTAATTCTAGTGTTCAACAAAATTTTTGGTATGTACTAATTTACTCTGAAGTGTAACTTTTGAGA AACAGTAAAATATTTATTTTTTATCCAAAAATCAAAAACTCAAATAGTGAAAGCACTGGAATTCC CTTGTGCAGCTGAGACTCGTATGCTTGATTGTGGATCTTGAAATGCATTCTGAGTTATTTTTAGA GAGTTTTCTAGCAACTTGCCCTTCCATCTGAAAATTAGCTGTCCT Found at i:3721061 original size:7 final size:7 Alignment explanation
Indices: 3721049--3721062 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3721039 AACCTCGTCT 3721049 TTTCCGC 1 TTTCCGC 3721056 TTTCCGC 1 TTTCCGC 3721063 ACAACGCCAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.14, T:0.43 Consensus pattern (7 bp): TTTCCGC Left flanking sequence: Indices 3720549 -- 3721048 CTGTTTTTTAAATTCCAACTTTTGCAGAGATATCGATTTCGCAAACGCGGTCGCACTGAAAATGA ATGAGAATTCTGATGTGTTGGTTTCTGGTGGTCCGAAATGGGAGATACAAGATCCGAGAAGAAGA TGGAGAATGGGCGCGGAATGGAACACTGAATGGTCGCTAAGAATGGAGGTGATGGCGGTTGAGGA CACAACAATTTCCGAATAATTCTTTCGAACTGTTATTTCAACTTTGTTTTCAACTTTATTTCTTT GGGTTTCTATTAGGTATATCTCTTTAAATTGTCGACCTTTCACTTTCCAAATTCTTACCTGTAAT TTTTTTCACAAAAAAGTTTAATCACAATAAATATGGTGCACTGTACTTGTTGAAAATATCTTTTT AGACCCGTGAATTGTCGGCGACAAGGATATGTCGGCTGCTGATTGAACTTGCTGTATCTTTCTTT TCGACTGTGTTCTAAAAAATATTTTATACAGCGAAAACCTCGTCT Right flanking sequence: Indices 3721063 -- 3721562 ACAACGCCAACAATTGCCAAATTCCCATGTTTGGTTCCCAAAAATTTCCATAAAAAGAGACCGTT TCCCCCTCTTTTTCCCCGTATTTTATCAGCCACCAACCGATCACGAATGCATATTTCGCGTCGAC TAGATAACGTGGTTCCCACACATTTATTTTGTACGGTTCTCGTGTCAAACCGATTGCGATTTTTG TTTTCCGTTTTATTTTGTTTCTTTTTTGCTTTTTGCAGAGACTCTTATCGAAATGAAAGATTATT CCGGAGCAAGCTTAGAGGGTAAGCGTACTTTAAGTCTGAATTTTAGAAATGTTAGTTTAGAAGTT CTGAAGCTAGCGGAGAGCATCCCTGACGTAGAGCTTCGCGGGGAGCCAGCTGGTATAGCAGTTCA AGTTGCACGAGAACCAAGCGCAGAGCCACTGCCAAAGCTTCCACGAGTCATAAAAGAAGAGCCTT ACTTTCCAGGTTTGTTTCGCTTATAAGAGAAGCTGTGCAGTGGGC Found at i:3721292 original size:7 final size:7 Alignment explanation
Indices: 3721280--3721293 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3721270 TTTTGTTTCT 3721280 TTTTTGC 1 TTTTTGC 3721287 TTTTTGC 1 TTTTTGC 3721294 AGAGACTCTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71 Consensus pattern (7 bp): TTTTTGC Left flanking sequence: Indices 3720780 -- 3721279 TTCAACTTTGTTTTCAACTTTATTTCTTTGGGTTTCTATTAGGTATATCTCTTTAAATTGTCGAC CTTTCACTTTCCAAATTCTTACCTGTAATTTTTTTCACAAAAAAGTTTAATCACAATAAATATGG TGCACTGTACTTGTTGAAAATATCTTTTTAGACCCGTGAATTGTCGGCGACAAGGATATGTCGGC TGCTGATTGAACTTGCTGTATCTTTCTTTTCGACTGTGTTCTAAAAAATATTTTATACAGCGAAA ACCTCGTCTTTTCCGCTTTCCGCACAACGCCAACAATTGCCAAATTCCCATGTTTGGTTCCCAAA AATTTCCATAAAAAGAGACCGTTTCCCCCTCTTTTTCCCCGTATTTTATCAGCCACCAACCGATC ACGAATGCATATTTCGCGTCGACTAGATAACGTGGTTCCCACACATTTATTTTGTACGGTTCTCG TGTCAAACCGATTGCGATTTTTGTTTTCCGTTTTATTTTGTTTCT Right flanking sequence: Indices 3721294 -- 3721793 AGAGACTCTTATCGAAATGAAAGATTATTCCGGAGCAAGCTTAGAGGGTAAGCGTACTTTAAGTC TGAATTTTAGAAATGTTAGTTTAGAAGTTCTGAAGCTAGCGGAGAGCATCCCTGACGTAGAGCTT CGCGGGGAGCCAGCTGGTATAGCAGTTCAAGTTGCACGAGAACCAAGCGCAGAGCCACTGCCAAA GCTTCCACGAGTCATAAAAGAAGAGCCTTACTTTCCAGGTTTGTTTCGCTTATAAGAGAAGCTGT GCAGTGGGCTCTGAGCAAAAATGAATTTCAGAGAATTCGGAGCAGGCCAGCAGCTCCCCTCCTGT CCCACAAATTTTGTGCGCTTCCCCAAACGGACCAGTGATCCATGGGAAGTCGCTAGTCGCCGGGT ATCGACCAGGTATGAGTTCTAGAGAGCTCCATAGTGTATCTTGAACCACCGTTAAAAATTATTTC AGATGATCGGACACCTGCCAACACCCCACCTCGTTTATATATTCC Found at i:3725858 original size:9 final size:9 Alignment explanation
Indices: 3725844--3725861 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3725834 TTTCCGGTAG 3725844 ATTCGATTT 1 ATTCGATTT 3725853 ATTCGATTT 1 ATTCGATTT 3725862 TAATTCAAAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56 Consensus pattern (9 bp): ATTCGATTT Left flanking sequence: Indices 3725344 -- 3725843 ATTCACTACCACGAGACGAACAAATCCGTTATAGCCGGGGTGATTAGTAGAAGCATTGAGAATCG CCCCGAATCTAGTGAGAAATTGGTTTAATCCGTCTACAAGAAAGCATCTTTCAAATTTCAGATAT GGAGGTGGTGGAGGTCACGTATTTGCACAAGTACATCAAAATTCTGTGTGAAATCGCAGGAATTT GTGAAAAGTGAGCAGTTGCTGGTGAACTTTTCAAATTTAAAATCCATATTTTCAGACAACCAACA CCGGTGAAAGAATACGCGGCCGACGAAACAACTACCACAACTCCTGAGCCAACAACGACAGTAGC AGAAACCACCCCAGCTCCAATACCACCACAAAAGCCGACACCTGCTGCTCTCGGCCAGAAAGAGG ATTTGACAGGATGTGGGACGGATCGTTTGTGCTTTGATGAGGAGATGAATGCATCGGCTAGTTTC AAGAAGGTTGTGCTCATTTTTGTACTTTTGATGCTTTTCCGGTAG Right flanking sequence: Indices 3725862 -- 3726361 TAATTCAAACTTCTGGACACGAATGAAAATGATTATTTTTTTACATGCTTAATTATAGCAATATA AAACAGGGAGCAAGACAAAAACTAATTGTGACTGGATTGGACAAGATGCATGTTGAAGGCGTACT CATTGTAGCATTGTGCTCCACAAAGTGAGCACTGAAATGGGTTGCCGATCGTGTGGAAACTGGTG TGGAGCTGGCCCAGCACAGCGTCTTTGAACTCAATTTCACAATGCTCGCATTCCTGAAAACAAGT GTTTAGAGCAAAATTTCAGGTCTAGGCCTACGTGGCTAGGTACCTAGGTACCCAGATACACAGGT GCCTACGTGCCTAGATGCCTAGGCAGCCAGATGCATAGGTGTATACGTGCCTATGTGGCAAAAGT ACACCTTCTCAAAGATAGGAAGGTGTTTTTCTGCCCTCATGAAATGCGAGCTTTGACAACTTACA AATTTTGGCTGCTGAGGTTTCTGTGCTCCATGGAACATCGAGGTA Found at i:3731914 original size:7 final size:7 Alignment explanation
Indices: 3731902--3731916 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3731892 AACGAGACGC 3731902 TGCATTA 1 TGCATTA 3731909 TGCATTA 1 TGCATTA 3731916 T 1 T 3731917 TTTATCGATC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TGCATTA Left flanking sequence: Indices 3731402 -- 3731901 TTTTTGCTCACTTCAAAAACTAACCTGATTCGCGAACTTTCTTTTGCAAACTTGACACTGGGGCA CCTTAGCAGAATCCTGATCCAAAGTGGAAGAGGTTGCAATAAGCGACAATACGGCGTCTAGTGAT GACAAACTCATTTTCACAGAAGAAATCTCTGCGGATTGTCCGAGGGCAGGGAGGAAGGGGAGTGA GAAATGTTTTTGCGTAGTTGCAAAAAGAGGTACATAAGTTCAAAGACTGTGTCCTCGAAAGCTGT GAGAAGTTGCGTCACATATGACGTTGGGGCTTTTGGAGAAGCGGGGCCGACGAATTTATGAAATG TGTGTAATTGCACATTGTAGAGCTGATTGAGTTTTTCAGTATCTCAGTTTTTTCAGTAATTTCTC CATTGACGATGCACCTTCTTTGGGGGGAATATTGTAATCTTTAACAAAATTCACAACATTTTTGG AAGACCAGCTGCCAACTGTGCCAAATTTGCCGGGAAACGAGACGC Right flanking sequence: Indices 3731917 -- 3732416 TTTATCGATCCACTAAGATTATCTCCTAGCGTTATTCACTCATAATCTGCCTCTACAAGTCTTCC TATTCGTCATTTTTCTGCAATTTAGTAGGTTAGTAGACATGCTCGTTATAACAAAGGAATTTGTG TCAACTTACACTATTAAAGCAATCTCCAACTTCAAGCCGGATACCACTTATTGCAGCGAGGTTAA AGAATATTACTATATTCCATGGTATTTTTAACTTTCCTTTTTTTATTTAAATTTTTATATTTCCA GGAAACTCCATGTCAATCGAAGAACTGATCAACTTGAGGTGTATCTTAGTTGCGACCAACTTGGC ACAATTTGGTCAGTTCAGGCGAATGTTGAAGTGAAGCTTAGATCTCCCAATGAATCTCCCCACTG CAAAACAGCCACTGTAAATTTCAATAGTGAGAAGCCGAAGGAAAACTCATGGGGATGGAAGCAGT TTGCCGATTGGGAGAAAGTCGCAAAAAACTTTGTGATTGAAGATG Found at i:3736103 original size:7 final size:7 Alignment explanation
Indices: 3736091--3736107 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 3736081 GACTCTGAAA 3736091 AATCAAT 1 AATCAAT 3736098 AATCAAT 1 AATCAAT 3736105 AAT 1 AAT 3736108 ATGCGTGTAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29 Consensus pattern (7 bp): AATCAAT Left flanking sequence: Indices 3735591 -- 3736090 TTGGTGCTGCGAAAGTCATTGGGAGCCGAGAAATGGCTTATGAAGCAAATACGAACGTTCCAGGA CAATCCTAGGCGTTCCACGTGTTTTCAGGGGTTATATTTATTTTTTAAATGTGAAAATGAAACCG TCTGAACATTTTGGTGTTTTTGTGTTTGAGATATCATAATAAAAATTGGGGAGCATAGGTTTTCC AACATTTGCTATCAAACTGCACTAGCACTTTTTCAAAAAATATTTTGAGAAGCTCCAAACCGCCA AATTGGAGGGGGGTGCTATAGAAGTTGGACGCACTGTAGTATATTTTAATAATTATAATTATATT AAATAATTATAGTATGCAAAAAAAAAAAATCTTCCGAACAACTAACAAAATTTGAGATTCAAGTC CTCGTTCTGCTTGGCTTCCTGAGCTCTCTTGAGCTTTCGATTCAGCCTTCTCATTTCGGATCTCA TCTCTTCCTTGTGCTTCATGCATTTGTCCAGGTCGGACTCTGAAA Right flanking sequence: Indices 3736108 -- 3736607 ATGCGTGTACTTAAGGTCAACTAACGTGTTCTGTTCAAGACTCGAGTCTTCAGAAGCAAGGAATG ATGGAGCTCCGCTTGTGTCTGGATTATGCTCATCGTCTTACTATGGATGAACTCCTTCATTTGCT CTCGGAGCTGTTGGTTTTCGTTCTCTGAAAATTAATAAATGAGAAACTTGAAGCTTCAAGAGGGT GCTGATTTACTTAGAACCTGAGCAGCATGACGCATCTCATCACTATCGAGCTTGAGCTGTTCTGA AATTGAAAAATATTAGTCTAGTTCGCCTATTTTTAATGTAATGTATGCTTGCCTGCCTCTTTGCC TTGCCACAGGCGTACCTGCCACTTACAATAAGACACAGGAGTATGTGCCCTCTTTGTGCCTGAGT TTACGTCAAAATGCAGAGAGTAGGTTTTTGTAGGCACAAGGTAAGGTAGGTAGGTAGGAAGGTAT GTACGTAGGTAAGTAGTAGGTAGGTAGACAGGTAGGTAGGGAGAT Found at i:3741705 original size:8 final size:8 Alignment explanation
Indices: 3741692--3741711 Score: 40 Period size: 8 Copynumber: 2.5 Consensus size: 8 3741682 ATTACATTTT 3741692 CCTTACAC 1 CCTTACAC 3741700 CCTTACAC 1 CCTTACAC 3741708 CCTT 1 CCTT 3741712 TTTGCTCAAC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.20, C:0.50, G:0.00, T:0.30 Consensus pattern (8 bp): CCTTACAC Left flanking sequence: Indices 3741192 -- 3741691 CCATTTCCCACAACCAAACGCACATATGTCCAACACTACAGTAAGCCAACCTACAGTATTTATAG TAAGTCTACAGTCAGCCTACAGTAATCCTAGAGTACCTATAGTACTTGTGCATTATCCCTTCAAT TACCCCATCCTGATTTCTCTTCAAAGGACAATACTTTCTAAAATTACAGTAATCCTACAGTACCA CTTCAGTATTCCTACCGTACACCTACAATATCTCTACAAAACCACCACAGTATCTCTTCGGTACT CAAACATTATCACTAAATGTACATTAGTTTTGAAAAGATCTATCTTGTGGGAAGTACACCTGCAA CCTTTTTCCCACTTGGTAGATCAAACGGATCGCCACACCGCGCACTATCTAACTTCCTGCGTCTC TCCTCTCGCATGGTATTTTCAGAGGTGGCGTTCACCATTCTTTGTTCCACCCAGATTGGTGCTGT AGCGTTTGCTCTTCATCATTTTTTTCTCCGGCCTAATTACATTTT Right flanking sequence: Indices 3741712 -- 3742211 TTTGCTCAACTTTTATCTCGCCCGTGTTTTGTTTTATTGAAAATTTGTTAACTAAAAAACTTGCG TTCATATCTTTTTTCGTAATTTTTTAGTTAACCATTTTTCGATATCTGTAAAATGAACTCAGATA TAGGTTGTCAAAGTCAATACATAAATTTACTTTCAGTTTGACTCTTCTCAAGATCAGCCATGCCA AAGTTGACGATGAAGAAGCGGCATACAGCTCAAAAAGATGAGGTAGAGAACTGTTTGAATTTATA ATTTTAGGCTAAAATTTCGGTTTTCAGACGTCTCCAGTGCAAATTCGGAGCCGCAGAATCTACCC GAAAGGCTGGAAGCCACACGTTTCCCCTGTCAAGGCACAAGGTGAGTTCTCTTTAAAAAAAATTA AGTTGCACAGTCTCTAAATCTTCAATTTTCCAGTCCCACCACCACGCGTCTACCCGAAAGCCCAA CCGTGCAGAATCTCCTACTTGATGTGCAGAGAGCTGGCCCAGTCC Found at i:3753538 original size:9 final size:9 Alignment explanation
Indices: 3753524--3753541 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 3753514 TTGATGTTTT 3753524 TATCTGATA 1 TATCTGATA 3753533 TATCTGATA 1 TATCTGATA 3753542 CAAAATGTGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44 Consensus pattern (9 bp): TATCTGATA Left flanking sequence: Indices 3753024 -- 3753523 TAATCTAACAGTATTCCTACATCACCATACAACTCCGGTTTTAAAAGTTTAATATTTCGAAATAT TTGTTGATATCAGAAACATTTTAAAAATCTTCCTGAGAAAATATAAGAGTGAGGAAGTGACATCA ATTCCAAAGATCGACATCATAACTGATAACGAGTCACAATAAAACGCAACAATTTTCATTTTAAT ACGCTCACTTTCCTTTCCCGTTTCAGTAACCGCGAAATATTTCTGAACCACTGAAAATTGCATAT TTTCAATTTTTAAGCTTTTGAAAATAGGTTTTGAAGATTTAAAAAAATCAGCGGGAGTCTTCTCA TTTTCAAGAAAAGTTCAAATTGAAAACTGTTAAAAAAATCTTAACTGTTGGTGAAACAGTTTGTT TATACCTGATGCAATGCCCGGCTTTCTCCCTCTTTTCTTTTTTTACACCAAGAAAAATCGTTTTT TTCTCATTTTTTTTCTTTTTTGTCTTTTTTCTTTGTTGATGTTTT Right flanking sequence: Indices 3753542 -- 3754041 CAAAATGTGTTTTTCATGTTTCTTTTTTATGACTTCCTTGGAAATGCTGTGTCAACTTTGATAAC TATAATTATTGAAGTTGATAAAACAAATTGAAAAAATACCAAACTGAAATTTGGCTGAAATAAAA CAGCGAATTTCAATTAAAAAAAAAAAACAAAAAATTCAACTTTTCACGCTATTAAAAATATTGGA ACTTGTTTTGCTTTGTTTTTAGTTTTAAAATCCACACCATGTAAATATGTAGAGGCTGAAAATTG AGTAAAGTGATTTTCAGTGGGAATAACATCCAGCATTTTTTTCCGGAAAACGCGGAGAGGTCATC AAGCGCACTCTAATAAATATACTCATTTCAGGAGAGCCTGAATAACGAATGGCTACATGTGTTTT AACTATAGCTCCCCCTGTGATTGAAGCTGTTGCTGCATCAGCCGTTGGACTTTCCGCTGCATCTG CCACAGGAGCTGGCGTTGCATCTGCCGCTGGAGTTGTTGCTGCAT Found at i:3754233 original size:8 final size:8 Alignment explanation
Indices: 3754220--3754235 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3754210 AAAGGAGAAC 3754220 ATCAAACA 1 ATCAAACA 3754228 ATCAAACA 1 ATCAAACA 3754236 GCGAGGCGCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12 Consensus pattern (8 bp): ATCAAACA Left flanking sequence: Indices 3753720 -- 3754219 CTATTAAAAATATTGGAACTTGTTTTGCTTTGTTTTTAGTTTTAAAATCCACACCATGTAAATAT GTAGAGGCTGAAAATTGAGTAAAGTGATTTTCAGTGGGAATAACATCCAGCATTTTTTTCCGGAA AACGCGGAGAGGTCATCAAGCGCACTCTAATAAATATACTCATTTCAGGAGAGCCTGAATAACGA ATGGCTACATGTGTTTTAACTATAGCTCCCCCTGTGATTGAAGCTGTTGCTGCATCAGCCGTTGG ACTTTCCGCTGCATCTGCCACAGGAGCTGGCGTTGCATCTGCCGCTGGAGTTGTTGCTGCATCTG CCGCTGGAACTGGCGCTGCATCTACCGCTGGAGTTGTTGCTGCATCTGCCGCTGGAGTTGGGGCT GGAGCTGTTGGGCTTACTCTCGTGCTCCCAGCTGTTTTGATGGGCGTGGGAGCTGGTTTGATAGT AGGTTCAATTGGTCTTTTAGTTTTGGGCCCACCTAAAAGGAGAAC Right flanking sequence: Indices 3754236 -- 3754735 GCGAGGCGCACTCCATGTAGCTCCACAAATTCTCCTCGAAAATCTGAATCATGTTGGTATGAACC CGAAAAAGACCATTTCTACGTTTCCCAAAAAGCACGTAATTCGGAATCAATTCGACTAACCGCCA ATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATACTGTGAGTTGTTGTT GTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCTGAAACAATTGCATA TACATTTCACCGATCGACACAAAATGATTAAACGATGATTTTCATTTTTAAGATTTAATCAACTT AATGAAAATCGGACTGGATCCCCTGTGTTTCGAAAATCTGACTCTTATTGGTATGAACCTGAAAA AGACCATTTCTACGTTTCCAAAGAAGCACGTAATTCGGAATCAATTCGACTAACCGCCAATGTCA TTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATAC Found at i:3755502 original size:7 final size:7 Alignment explanation
Indices: 3755490--3755503 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3755480 TTAAACGATG 3755490 TTTTTCA 1 TTTTTCA 3755497 TTTTTCA 1 TTTTTCA 3755504 GATTTAATAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTTCA Left flanking sequence: Indices 3754990 -- 3755489 TCGACTAACCGCCAATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATAC TGTGAGTTGTTGTTGTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCT GAAACAATTGCATATACATTTCACCGATCGACACAAAATGATTAAACGATGATTTTCATTTTTAA GATTTAATCAACTTAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATTTGACTCTTATTGG TATGAACCTGAAAAAGACCATTTCTACGTTTCCAAAAAAGCACGTACTTCGGAATCAATTCGACT AACCGCCAATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATACTGTGAG TTGTTGTTGTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCTGAAACA ATTGCATATACATTTCACCGATTGACATAAAATGATTAAACGATG Right flanking sequence: Indices 3755504 -- 3756003 GATTTAATAAACTCAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATCTGACTCTTATTGG TATGAACCTGAAAAAGACCATTTCTACGTTTCCAAGAAAGCACGTACTTCGGAATCAATTCGACT AACCGCCAATGTCGTTTCCGGAGAAAAATGGAAAACATTTGCTGAACTCAAGGAATTACTAGGAA AGTAAGTTGTTGGGGTATCATTCCAAAAAGTGTCACTGTTTGCGATTATGAAATATTTATATTTG ATTGAAATATAATAATTGACGTAAAATGATAAAACGTTGTCTTTCATTCACAAAGTCTTAACTGC TGCAATTTCCCAGAAAAATAATGTTTCGAATATGTTTTCAGAGTAAAACAGTGTTTTCTTCAAAT TAATCACTTTCCTCCTTTTTTCTCTATACCTATGAAATTACTGTTTTCAACAGGAACCAAGACAT GAATTTGGTTTTAATGAATTCTGAAATTGTGTTTTGAGTTTGAAA Found at i:3756007 original size:7 final size:7 Alignment explanation
Indices: 3755997--3756010 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3755987 GTGTTTTGAG 3755997 TTTGAAA 1 TTTGAAA 3756004 TTTGAAA 1 TTTGAAA 3756011 AAGCGGTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): TTTGAAA Left flanking sequence: Indices 3755497 -- 3755996 TTTTTCAGATTTAATAAACTCAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATCTGACTC TTATTGGTATGAACCTGAAAAAGACCATTTCTACGTTTCCAAGAAAGCACGTACTTCGGAATCAA TTCGACTAACCGCCAATGTCGTTTCCGGAGAAAAATGGAAAACATTTGCTGAACTCAAGGAATTA CTAGGAAAGTAAGTTGTTGGGGTATCATTCCAAAAAGTGTCACTGTTTGCGATTATGAAATATTT ATATTTGATTGAAATATAATAATTGACGTAAAATGATAAAACGTTGTCTTTCATTCACAAAGTCT TAACTGCTGCAATTTCCCAGAAAAATAATGTTTCGAATATGTTTTCAGAGTAAAACAGTGTTTTC TTCAAATTAATCACTTTCCTCCTTTTTTCTCTATACCTATGAAATTACTGTTTTCAACAGGAACC AAGACATGAATTTGGTTTTAATGAATTCTGAAATTGTGTTTTGAG Right flanking sequence: Indices 3756011 -- 3756510 AAGCGGTTAAAAATAATTCAGGCAAATTACTTTTTTTTTACTAATTCCAATACTTAAGAACGGAT TTGCAATAAATACAGAAAAGGAAAATAAGTGCCTAAAACTACTTTAAAAGTGTATCACGATGTTT TGATGTACGAATTTAAACCTAAAATCTAAACCTCAAAGTTGATTGCACTACGTGTCTTAATAAAA TCTTAAAAAAACATTTTTATAGCCAACTTCGTGACGCTAACCAATCGAAACAAGATTCCTATCCA AGAGGAGAATGTAACACCCCAGAGAAAAGAAATGAAAAAAACAATAATTTCGAGAGACAACAACC ACGAAAATCGTTGCAAGATCAGCATTGGAATGTTCCTTTTGAATTCGAGAGAGACCCGAACAACC AAACAGGCCGAGAAAGAGAAGATTCATCCACTGACCAGTTTTGGATGAGCGTTACAACTCCAAAA AACTTTACATACACCGTAAGCTTCTTTCAAAAATATAGTCACCGG Found at i:3756647 original size:7 final size:7 Alignment explanation
Indices: 3756635--3756648 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3756625 AGTTTATTTG 3756635 CAAAAAT 1 CAAAAAT 3756642 CAAAAAT 1 CAAAAAT 3756649 GTTTCGTACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): CAAAAAT Left flanking sequence: Indices 3756135 -- 3756634 ATGTTTTGATGTACGAATTTAAACCTAAAATCTAAACCTCAAAGTTGATTGCACTACGTGTCTTA ATAAAATCTTAAAAAAACATTTTTATAGCCAACTTCGTGACGCTAACCAATCGAAACAAGATTCC TATCCAAGAGGAGAATGTAACACCCCAGAGAAAAGAAATGAAAAAAACAATAATTTCGAGAGACA ACAACCACGAAAATCGTTGCAAGATCAGCATTGGAATGTTCCTTTTGAATTCGAGAGAGACCCGA ACAACCAAACAGGCCGAGAAAGAGAAGATTCATCCACTGACCAGTTTTGGATGAGCGTTACAACT CCAAAAAACTTTACATACACCGTAAGCTTCTTTCAAAAATATAGTCACCGGAGGGTTCAAGAGCT TATTTAAGAATTGACAGGTAAGCGCGCTAGCCCAACTTGAGCAAAGGCTTGCAGCACTAATAGAG AATATACGGTAACTAACCGACAATGTTTGGACGTCAGTTTATTTG Right flanking sequence: Indices 3756649 -- 3757148 GTTTCGTACATACATATAAACCATTGTTTTATGAAAAAAAGTTTTCAGAAATTACAAGATTGTTT TGAGCATTATCCATGAAAATTCATTATGTTTGAATCTAGGGATATAACGAACGTAAAGTTTGCAG ATGGTAGGTCTTGCCAACAATGGACGCGAAGGTTTCCTGCATTCGTTAATCAGACACGGAAGAGA GTTCACGGGCTTTCCATCGAATCGTTTTCACAGAGATATTCTGGATGTAGTTCCACCATCCATAC GCCAATTGATAAAAGAAATTCGGAATTACAGCAACAGAGACAGGAGTAATGAGATAGAAAAAGAG TTACTTTCGGATAGGTCATATCCTGGTAAACACATGTAGTTAGACCGAACTAATTTTTAATATTT CCAGCTACACTGCAACTCCAGAAAAAGTTTCGAGATTACATCCAGAAAATTGTAAACGATGAGAG CAACTTTTTGTACAGACGCCCTAATACAAACGGACAAACTCAAGT Found at i:3758271 original size:10 final size:10 Alignment explanation
Indices: 3758256--3758275 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 3758246 CAAAATTTCT 3758256 GCCTGCCTAC 1 GCCTGCCTAC 3758266 GCCTGCCTAC 1 GCCTGCCTAC 3758276 CTTGTGCCTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.10, C:0.50, G:0.20, T:0.20 Consensus pattern (10 bp): GCCTGCCTAC Left flanking sequence: Indices 3757756 -- 3758255 TGAAAAATCTTGAGCTCACACATTTTGGAATTGAAAAATGTCAACGGTTGACCAGTTTTCTGCTC AAATTGGAGGAGCCTCAATGATAATTGTAAGTTTGCAGGCACAAAAACGCCTACTCACCTGCCTA CCGTTAGGCAATATAGGCATCCTTGTGCATTCAATTAAAATTAGTACGTTTTGAATTTTACACTA ATTTAGGCCTCCATAATCGGACTATTCTTCAATTTATCCGCATTTCGAAAATATTTATCACTTGA AAAAACCAGCTTCCATGTGATGTGCATTTCGAAAACTGTTTCAAATTCTCTACATATTTTGGTTT ATTTATTGTACAATGGCCCATCAGCATTGTTGTGAGTTTAAGAAAAAGTTGGAACAAAATTTCAT TTTGCTTTTAAAGATATGCCCAACTGGGACCCGAATTGCTGAATAGGTATCTTAACCAGGCAATT GCTTATGGTCTATATTGTCAAGGTGAGTTTTGGGGCAAAATTTCT Right flanking sequence: Indices 3758276 -- 3758775 CTTGTGCCTACTACCCTGTGAACCTCTTAAAAAAACTTGGGCATTGTGAAACACTTGGCAATCGT TGACCAAACTTCGCGCCAAAAACCAATCATAAATATGGTAGGCATGCACATAGGCAGTCAGGTAG GCAGAAAGGCAGGAATGATGTAGGCACCTACTCCTAACACCATCTACCCTTTAGGACCCTTAACC CAGGCGCTTATTACTATCAATCGCTTCCTGATTGTCTACTTCGCCCCAATTGTCATCCCCTGGTA TAGTAAATGGATCACTTTTGGCTCACTTTCGGCTTGTTGGATTATTGCCGCATACTTTTCTACAT TGATAGGGTTTCCAGGTACCCAGCTTCATCTTTTTCTCATTTTCCTAACTCTCAAAATTTTCAGA ATCCTGCCTTATCCGATTCAGCCATCAAAGCCTTACCTGGATGCACGATGAATGCCCATATTTTA TACATTACATCTTGCAAAGTGATTTTCTATTCCTAGTACTTCCAC Found at i:3763244 original size:7 final size:7 Alignment explanation
Indices: 3763232--3763245 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3763222 TTTGATACTG 3763232 CTAAACA 1 CTAAACA 3763239 CTAAACA 1 CTAAACA 3763246 GAAACTTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14 Consensus pattern (7 bp): CTAAACA Left flanking sequence: Indices 3762732 -- 3763231 TGAACATTCTCAAGGAGACTCTCGAAATCCTTCATCGTGGTATGAAATAGGAAGAAGTACATCAA ACTATGTCGGATGTGGATGTCACTATTTACATACATCGTCGGCTAACTAAACTCAGGTCAGAGGG AAGGGAATGGGGTGTTTTTTAAAATTAAGTTCCTTTACTCGTTGTTATACCCTAGCAACAAGGGA ACACCAAAGTGCAACTGCGGCTAGCGGTGGATAAGCAAACCCAGTCACAAAGACTTCCGGTTCAA CCTAATAGAACTACACTATAACATGTTCTAAACTTTTGACGATCCATTTCCAACTGCTTCCTTGC AGTGCACTTACCACCATATCCTCGTTTTCCACAAAGTCTTTTAGCTGCTTTTTCTCAAGTTTTTC TTCTATTTTCTTTGAGGAAACCCACTGATTTCTATTAATATCCACAGAAGAAAATTGAAATTCAA TATTTAACTGAAAGTTTAAAATAAAAAAGTATAGTTTTGATACTG Right flanking sequence: Indices 3763246 -- 3763745 GAAACTTTGAACGCAAAAGTGTAAAAATGCGAGTTGTTGCCATGCGGAGTTTGGAGGTGGACGGG GGCTAATTATATGCTCCAAATGTGCACTAATCACACCTCTTTTACGAGTTGTCTGATTATATATA TTTTGGGTGAATATAAGAAAGTAGGAGAAAATTCATTCATTTTGGGAATTCGGTGAAGTTTTAAG TTAATTGAGACGTTTTGCTGATACAACATTTAAATTTACGCCCGCTGGTTGTATTTTCAAATGTT TGTAGTTGAACCAATATAAGACAAATCTGAAAAAAAAATGTTGGTAGGGCGCAAGAAAAGCGTCT GAAATAGCCCCCAACTTACCCATCAACTCCAAAAACTACTACATCTACACTCATCGAGATGAGCA TTATACAAGACTGATTTTCGCAATATTTAGTGGAAGCCGCATTATTTGCAGCGTCAACTGCTGAA ATCCAATCTTGAATACACGATTGAAAGAAAAACTTGATAGATCTC Found at