TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10464717 original size:8 final size:7 Alignment explanation
Indices: 10464700--10464714 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10464690 AAAAAAGGTA 10464700 TCTATTT 1 TCTATTT 10464707 TCTATTT 1 TCTATTT 10464714 T 1 T 10464715 TCTCAACAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73 Consensus pattern (7 bp): TCTATTT Left flanking sequence: Indices 10464200 -- 10464699 CCACCCTTTTGCATTAAACAAGCTTGTCGTGCCGAGACCGGGTAACGTATTTTTGGTAAAAATTC GATTTTTGATTCCTTAGAAAACAATTTCCGTCGTTTTTGTTTAAACAATGACTCATTCTACTTAA TTTTCAGACTGGCAGATGGCCAAGGGGAAGGGCCAGAACCAGGGCCACGACCACTCGTTCCGTCA ACAGCAGAAGCAGATGCTGGATCCGAGACCCAACAACAATGTGAAGCCGGCTGACGATAAAGCTC AATCTGCCACCACTGCCACTGCTGCTGCCGGTGGATCCCGTGTGACAGATCTCAAGAACTGGGGC AACGAGTTTTCGATTGCGACGGCTCCAAAGGATCAGGCTCCGGCGGTGCCAGCTGGAAACTCGGG TAGTGCCTGGAATCGCGGACCACCGAGCTCGCTGGTTGCCAAGGGATCATCAAATGAGTCGACTC CACCACCGACAACCAATGGAGAGGAGGCTGAGACTAAAAAAGGTA Right flanking sequence: Indices 10464715 -- 10465214 TCTCAACAAAAATGAACAATTTTGCCAATTTCCAGAAGAAGCTCCATCCACAAGCGTCGATGTGG CAGCTGCACCAGTGCAAAACGTACAGAACGACGCGGAAAAGCATCAGGAAGACGACAATGTTTCC GTTACTTCAGAGAATGATTCAGTGATCACTTCGAAGTCATCGTCGTTCAAATTCAACATCAATGC TCCAGAGTTCAAGCCACGTGTGGCTCCGGCGACTCCAACAGCGACGACTCCAGTGCAAAATGGTA GGAAAACGAACAAAACGGCTTTTTTTCAGTATTTTTGTATCAAAAATTAATACAGAAATGTATGT AGAAAAAAGATAATTTTTGTTGAAAGGTTTGAGAAAGATCTCAAATTGTGTCATTTGAGAGGGAA TTTTTAAACCAAAATAAATATTTTTCTAAATACACATAGGTATCAATTTTTGATACAAAAATTTT GGCTGCCAAGACGGAGTTTTAACTCTAAAATTTTCAGAATATCAT Found at i:10467780 original size:7 final size:7 Alignment explanation
Indices: 10467768--10467781 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10467758 ATAATCCTTC 10467768 CTTTTTT 1 CTTTTTT 10467775 CTTTTTT 1 CTTTTTT 10467782 TTTGAGCAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86 Consensus pattern (7 bp): CTTTTTT Left flanking sequence: Indices 10467268 -- 10467767 AGCAGCACTCTCAGAGCCCCCCGTAATCATATCTATATGCGCTCTTCCTGCGCTTTTCAGTGCTT TATATAATGTTTCCCCAATATATATTCATTTTAATATTCTTATTTTCTTCCTTCTCTTCCTTCTT TTCATCAAAAATCCGCTTCTCCCCCCTTCCCCCATGCCACCATCTACAACAACCACAAAAATCTC GTGGAATTCCGAAATTCCGTCATAAACAACAAGATGTGATGTTCTAGTTTTAGAAAAAACCGTGT GTTCTTTGTATCCCCTCTTGTGGGTAAAGTTCACACCGCCAATACCTCCTCCTCCTCCTTCTCCC CACACAAATTACTTGTAGTGTCGGAAAAAGTACACTTTTCCGTACACGAAGGATCATGTCAAAAT GCTCCTTTCACTTTTTATTCGTTATTTCTCTCGCTCTGCCTTCCTGATTATCCGTTTCCGAGACC GTCTTATTCTTTTTTTTTCTTGTAAAACCAAACCAATAATCCTTC Right flanking sequence: Indices 10467782 -- 10468281 TTTGAGCAATACCATCCCTCCCCCCACAACAAAATCTATAATTTATTTCCTTAACATTATTATCT TCAACCATCTCGCGCACACTACTCATATTCTAGTGAATGCCCCTTTCCCCCGTCCCCCAGATGTA ATAAACATCAATTATTGCTCATTGTATTTTTTTTCACAAATTCATAGTTTCAGGGGTCAATCAGT TCAGAAATAGTTCAAAGATTGAGGATCTTCTTCTTAAAATGAGCAGAATCCGCATACGGCCAGAT CTTCTTCGCCATTTGCATCTTCGTCGCCACCTTATAATCGTTAGGAGCTCTCTTCTCACTGATCG ACAGAGCCGTGAACATCTCCTCACCACCGCCCTTCCCAAGCTCCCACTCGAATCGGCCAAAGAAC GATCCACGGACTCTCTTGAAACCGGCAAAGCACTCGCTCCACAGGCCGAAATAATCCGGGCGGCT CTTGTATTCCAGTGTCTCCAGGTACTTGTGAATATTCGCAAATTC Found at i:10469530 original size:7 final size:7 Alignment explanation
Indices: 10469518--10469531 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10469508 CATTTTAAAA 10469518 TATTTTT 1 TATTTTT 10469525 TATTTTT 1 TATTTTT 10469532 CACGGCCGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): TATTTTT Left flanking sequence: Indices 10469018 -- 10469517 CATCCCGTTTATGAGCCATCAGATCCTTGCCAAGAAGAGTCATCACCATGAAACAATACGATTTT CGATCGCCAGCATCCATCAATCTTGCACAAAACGGCAGTGGAGCCAGTGATTTGAGCACGTGAGC CTCCAGCTTCAGAACCCCGCCGTCACTCACGTCTCCCTCGACTTTCATTGCGGCGTATGTCTGAA AGCGGGTCAGATCTCGTACTTTGAACACCGCACCCATACCGCCTTCGCCGAGTTTTTCAACGATT TTCCAACGCTTTGCGATTATCTGAAATTGAGGGAAATTGTGAATTTCCGGCTGAAAATGCTCAGA GAAACTCACTTTTCCTTCTGTGATCGCTTGAATTTCTTCCATACTGATTCTGACCACGAAATCGA TTGAAACTGTGTAGCTAATAGAGAAATGTAGCTTTTCGAAATATTGAAATAAATTTAATTATTTA TTCAATCCTTTTATGTATTGGTTTTTTGTTATTCACATTTTAAAA Right flanking sequence: Indices 10469532 -- 10470031 CACGGCCGTTGTTCACCGATCATATGATTACGGTGAAAATTCTAAAACTATTTATTTCCTATTTT ATACCAAATAGTTGCAACATATTCTGATAAATCATGTAAGTCTTGTAAGAATACAAAATGTTCTT AGATTTAATTAATGTTGTTTTTTCTTGTTATTCCAGGTACAGTATCTTTTTAAAGGCGCACGAAC TAATAAGTTTACCGAGTCCCGCCAAGAACTGTTTCGAGTTTTACAGCGATTTTTGTTCATTTTTT TTCAGTTTTTGTCTATTTATTTGTGAAAGAATAATTTCTCCTCTTTTCCGCAATAGAAATATAAA AAATGATTACAGTTTTATGGGCTCCTGTTTAAAAAACCTAGTTCTACAGTACTTCGATTATTACT TCCACTAATTAAAATTTCCTTTGGGCATCGCCAGGATCGATGTACAGTTAAAAATCTGTTTTCCA CCTGTTGTTTTATCGAATTCTTTTTTTACTTTTTTTTCTGCATAA Found at i:10472776 original size:10 final size:10 Alignment explanation
Indices: 10472761--10472780 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 10472751 TACCGATTTT 10472761 TTCATATCGA 1 TTCATATCGA 10472771 TTCATATCGA 1 TTCATATCGA 10472781 GGCTTCTCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40 Consensus pattern (10 bp): TTCATATCGA Left flanking sequence: Indices 10472261 -- 10472760 CGCGAAACTCTACGTGAAGACGCTTCTGGAGGTTCATGAACGTTATCAAAGCCTTGTCAATCGAT CATTCAAAAATGAGCCAGGATTCATGCAATCACTCGATAAGGCGGCGACTTCTTTTATCAATAAT AATGCCGTCACTAAACGTGCCCCGCCACAGGCTCAGTTGACAAAGTCCGCGGAGCTTCTTGCCAG ATATTGTGATCAACTGCTCAGAAAAAGCTCGAAGATGCCCGATGAGGCGGAGCTCGAGGAGTTGC AGACGAAGATTGTAGGTTTTTCTCGCTTTTTTTTTTCTCAAAATGGCGTAATTTCCAGCTAAAAT TTGAAATTTAACCAACTTTTTGCATATTTTGGTTGTTTATTTCGTTGATTGAGGAACATTTTCGA TCGATGAGTGCACACTGCGAAACTGATAAGTTGGCTAAATTTGAGATTTTCGCTGAAAAAAAAAA ACAGATTCCTCTCCTTTTTTTCATATCGTTTTTCATACCGATTTT Right flanking sequence: Indices 10472781 -- 10473280 GGCTTCTCAAAATTTCGAAAAATACGGCAATTTTCCCAACTTTTCAATTATTTACCTTTTTCTGA CGTTTAAATGTGGCTATAAATCGACCTAAATCAACGAAAAACGCCAGTAATCAATTAAAAATCAA TTTCCGACATACGGGAAAATTTGAGGTTTTATCTAAAATTGCCATATTAAAGGATTAAAAGATTT AAAATATTTCAAACCTCCATAGAAATGAAAACCCAATTTCTAAAAAGTTAGCTCAAAATTCTAAA ATTTCTATTCCAGATGGTTGTGTTCAAGTACATTGACGATAAGGATGTATTCTCCAAATTCTACA CGAAAATGTTCAGCAAACGACTTATCAGTGAACTCTCAGCAAGTGATGAAGCCGAGGCTAACTTT ATCACGAAGCTCAAGAGTATGTGCGGGTACGAGTATACCGCCCGTCTCTCGAAAATGGTCAACGA TACTCAAGTCAGCAAGGATTTAACCGCGGATTTCAAGGAAAAGAA Found at i:10476340 original size:7 final size:7 Alignment explanation
Indices: 10476328--10476341 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10476318 TTTATAGCGT 10476328 TTTTTCA 1 TTTTTCA 10476335 TTTTTCA 1 TTTTTCA 10476342 AAGGGTTCCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTTCA Left flanking sequence: Indices 10475828 -- 10476327 AAAAATCGATAAAAAGTTTCCAGAATCCCTTCACAAAATATATGACCGAATTTCTACACTGCTTA TTACTCTTCCACGTGTTTCTGAGCTCGTGGGCTCTATTTCCGGGAGCTGAGCCAGATGAGGGAGA CGTTCGGCACATTTATCCGCCGGTGTATATAGGGGTTGGGCTCGGTGAGCACGCCCACGCAATTC CATACTTTTTGGGTTGGCTGGAGAATTTGGATTATCCAAAGGATAGGATTAAAGTGGAAATTTTC ATTTTAAGCAAGGAAGATGCGACGATTCATCAGGTTAAATGGTTGGTTTAAAGGCGCATAACTTG CAAACCACAGGAACATGGATTAAGCTTAGTCTTAGGTTTAGGCGTAGGCGTAGGCTTAGGCTCAG GCTTTGGCTTAGGCTTAGGCTTATGCCCATGCGTAGGCTTAGGCGCAGGTTTAGGCTTGGCGTCA GTGGCGAGCGTTAGCTGACGCTATTTAGGCTTGGGTTTATAGCGT Right flanking sequence: Indices 10476342 -- 10476841 AAGGGTTCCCGTTGGCCGATCAAAGCGAAATTTAACAGAGAGTCGTATAGGCCACCAAGAAGCTT AAGTCTGAAGTTTCAAATTGATTCCATCAATTAGGCTTAGGCTTGGGCTTGGGCTTTGGCTTAGG CTTAGGCTTATGCTTATTCGTAGGCTTAGGCTTAGGTATAGACATAGACTTAGGCTTAGCCTTAG GCTTAAGATTCGGCTTAGGCTTACGCTTAAGCTTAGGCTTAGTCTTAGGATTTTGCTTAGGGTTA GGCTTAGGCTAAGGTTTAGGCTTAGGCATAAGATCAGGCTTAGGCTCAGGCGTACGCTTAGGCTT AGGTTTACGCTTAGGCTCCTTAACTTCGTGCTCCTGCAACTTTTTGAAAAAACTGCTGAAAAAAA ATGGCAACGAACAAATTGTAGCATGGAAAATATTTTGTCAGATAATTTTCCAAAAAACGTAGTTT TCAGGTGGCTAGACTCTACAAAACAATACTTCAAATCTGTCAAAA Found at i:10478553 original size:8 final size:8 Alignment explanation
Indices: 10478540--10478555 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10478530 TGCATTGTCA 10478540 TGAAAAGT 1 TGAAAAGT 10478548 TGAAAAGT 1 TGAAAAGT 10478556 AAAAATGAAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25 Consensus pattern (8 bp): TGAAAAGT Left flanking sequence: Indices 10478040 -- 10478539 TGGACAAAAGCTTGATGAGCTGCCGGAAGAGCTAAAAAATTATCAGATACTGGAAGGATACCTAG ACCCAATTAGTAAAAGGCCCATGAAAAATGGAGAAATTGGATGCTTTTTGAGCCATTACAGGTGG GAGAGAACAACTTATGTAACAATTGAAAATGTCAAAAAATGCTTTAAAGTTTTAAAATTTTTAAT CGATGCACTATGTTTTGTGTTCATGAAACACGAACTATTTTAAATAATGTTTTTTTGGAACATTG TCAAAAAAAGATAAATAACTGGGAAAAACCAGAAATGCGACGAAATTTTGAAATATTTAAATCAA GAGCTATGTTTAATAGGACAAATTCTACACTACTTTTTTGACTCCAAACAATTTTTTCGTAAAAT ATAGTATACATTTTGGCCTAGTCTCGGAATTCCAACTTTTGTACTCGATGCACCATTTTCTTCTC AAAATTATGTACTTTTTTGGAAAAAAGGCATTTTCTGCATTGTCA Right flanking sequence: Indices 10478556 -- 10479055 AAAAATGAACAAAACTGATTAAAACAAAAAAACCATCGAAATTTTCTTCCAGAGTATGGCAAGAC GTCGTTCAACACAACTACGAGAAAGTGATAGTTTTCGAGGATGATCTCCGATTTTCACACGACGG TTTGACCAGAATTCGGGAGGTTCTTCAAGATCTAGACGCTTCACATAAGCCGTGGGATTTGATTT ATTTGGGACGGAAAAAGCAATCTGAAAATGAAGAATTATGGATTTCACAGCACAGACATTTATCG TCTGTTGAGTATTCATATTGGACACTAGGTTACATGTTATCTCTCAATGGAGCGCGGAAGCTTCT GAGACCGAATCCGTTGAAGAAGATGGTTCCAGTTGATGAATACTTGCCGATTATGTTTAATAAAC ATCCAAATAAGGTAAGCCTGAAAATTTGCGCAAGAATATAAACACTTTAATGACTTTCGATAATA TTTGGAAAATCCAAATATATTTTGAAAAACCGATAACATATGGAA Found at i:10486272 original size:7 final size:7 Alignment explanation
Indices: 10486260--10486275 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10486250 TCTACAAGAA 10486260 TTGAAAT 1 TTGAAAT 10486267 TTGAAAT 1 TTGAAAT 10486274 TT 1 TT 10486276 CACAAAAGAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50 Consensus pattern (7 bp): TTGAAAT Left flanking sequence: Indices 10485760 -- 10486259 TTTTAAGTCTAATACAGCATCCACCGTTAAATGAAAAGTTGCAAAGTTTAATTTTCAAAAATAAA TTAATGACAATTTGTTTTGAATAAGGGGCAAGAAAATGGGTTCAAAGTTCCTCTAATGTGACTTA TGATTATTAATATTTGAGAGGAATAATTTTTATGATCGACGACTTCCAAAAGAGGGGCAAAACTG AGCGATAACCATTTTTTTTTAATAAAAAATTTCAAGCATTTTTCGAAAAGTTTCACTATGATATT TTGTTGCTTTAGCATCATAAGATTGGTTTTCAACTATTTTTTTGTTGTAAAACTTCCTTGCCCCT TTATTGAGGATTCCCACCAAAAACATCCAACCTTCTTGTCCAAACCTAATCCTCCCATGCCCTCA ATTAAGTGTGGGAGGAGGAGGGCGCGAAATTGGCAAGGTGTTCAGATTGTAGTACAAGATAAGAG TAATTTGATTGATCAATCACCCAAAAAAGTTCCTCTCTACAAGAA Right flanking sequence: Indices 10486276 -- 10486775 CACAAAAGATTGTCAGAGATATGGAAATTGTCAATCATATCCTTCCAGTAGTCATAGTAATATCA GGGAATTTAGGTCAATTATTCAATATATCCCTCCATGTTCGCCTTCCCCGACGGTGTTGCAATTT TATCAATGCAACTGTTATGTACTATCCCTTATTTATCATATTGTTTATCATTGGTATCCCACTCT CTCCGAACTTCTTGCCCCTCTCCACTTCGTACCAGCCACCGCCATATCTTTTCTCTCTTGATTGA CGACGTGGCAACATTTACTGTTTTACCTTCGCCTCCTATCATTTTTGAACACATGTTACATTTGA ATCAGAGAGAGATACGCATTTTTTTCATCACATTCTATGAACTTTTATATGTTTTGAAATATTAA TTTCTTTAAGACTGAATCATGTTCTAAATTACCTTGTACTTTACTGTTTTTAGGATTTTCAGTGG AGAAAGTGTTTAAAACCGCCTAAGGAAAAAAAACTTTTCAAAAAA Found at i:10487724 original size:8 final size:8 Alignment explanation
Indices: 10487711--10487726 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10487701 TAAAAACACC 10487711 AAATTTTT 1 AAATTTTT 10487719 AAATTTTT 1 AAATTTTT 10487727 GCTAGTTTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (8 bp): AAATTTTT Left flanking sequence: Indices 10487211 -- 10487710 AATATGAGCTACCAAATTTTAGTGTGGTTTTCCCGATCGATGCACCATGTGAAAAAACTAACTAC AAAAAATTTTCAAGAATTAATTTGTGAATTAAAATATTTTGAACATACTGAAAATTGTTGCAAAG CTACAAACCACTTGTCAAATAAACAATACATTTTAATAAAACTGATGGATTTTTTAAATTTAAAC TTCATAATTATTCAAACATTTCTCATAAAAAATTGAAAACTTTCAGCATTTTCTACAACGTTAAC TTAAAACTAAAATAAATTTTATAAACTTGATGTTCAAATTCTTCTAAAAATGGTTTTGTTAGCTT TGACTTCAGGTTTATTTTTTGTTGCAAAATTTAATTTTTACCAGTTCATTTGAAATTCTTCTGTG TTGTTAAAGTTTTAATTGGGTATTTATTTTTCTAGAATTTTTTCTAATTCACAGTCAATTAACAA AATTTTGAAAAGTATTTAGACCTATTCTTATTCAATAAAAACACC Right flanking sequence: Indices 10487727 -- 10488226 GCTAGTTTTCCGAAAATGGACTGAAAATAAATTAAAAAATTTTATATCTAAATTAAAGCTTCGAT TTAAGTGGACAATTTTCCATATCTAACAATTAGTATCTCATGATTCATCAACTCCTATCTACCTA AATTTTGCGCTGTCGTCGTTTTGTTACCTGCTTTCCCACTTGTAGCACCACCGTCACCTTTTATT CTGTTTTATCTTCATGGGAAGGGAACACTCAAATAATCACTCCCCCACCTTCATCTTTAAATCAA AGTCAATCATTATCTTCCAGGAAATGTCATCCTCATACTTTGGCGCCAGTGGCCCTGATCCTATA TCCCGGCAAAGTCCTGCAGCAGTCAGGTTTCAGAGAAAAGTTTCCACAGGGTCTGCACCGGTGAG TTCATGCTGAAAATAGGGGGCTAAAAATAGTTTCATAGCTGAAAAAATATTCCAAAAACTGCAGA TGAAGAAATTTTGTTTCCAGCAAAACGATTTACTAAAAAGTAAGA Found at i:10489983 original size:8 final size:8 Alignment explanation
Indices: 10489970--10489985 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10489960 TCAAAATTTC 10489970 CGGCAAAT 1 CGGCAAAT 10489978 CGGCAAAT 1 CGGCAAAT 10489986 TGCCGATTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): CGGCAAAT Left flanking sequence: Indices 10489470 -- 10489969 TAGTGTTGCATCACGCTTTTCTAATTTAGACAGAGAGGTATTTATCTACATATTGTAGCTGACAG TTTGTCGGTATCATCAATGACAATTGAGATATGAGCAAATAATTTGTCCGTATTTTCTGTTTTTT TCTGTGAAAACCCCTAAATTTTGACAGTCTCATTTTTTTGATACAAGTTAATTTTAAAACGCAAA ACTTTGATTTCAACATTTTTTCGGTTTATATACTTTTTTGGCAAACTTTAAAAAATTTTCTAACG CATTTTCTATACCATTTTGTTGTTTGTGTAAGCGGTGGGCGGCAAACGGGTTTTTTTGGCAAAAA TTTCCGGCAAACTGGCAAATTGCTGGAATTTAAAATTTCCGGCAAATCGGCGAATTGCCGGAATT GAATTTTCCGGCAAATTGACAAATTGTCGGAATCAAAATTTCCGGCAAATTGACAAATTGCCGGA ATCAGAATTTCCGGCAAATTGACAAATTGCCGGAATCAAAATTTC Right flanking sequence: Indices 10489986 -- 10490485 TGCCGATTTGTACAAAGTTGTACAAAATGTAAAAAATGTAAAATTGTACAAAATAGATTTGTACA ATATGTAAAAAATACACGTATTTTCTGTATTTTTCGGCCACCGTATTCTTTGCGATTTCCTGAAG AAAAAACGTCTATAAAACCAACCACAAAAAACCTTAATAGTCCTTAATATAATTGCCGACGGCCT CTTTCTTCTCAATTTTACTATCCTTTTCATTAGCTGTGTGTAGTAAAAAAGTTTAAAAAAGTTCT AGCTGGAAACTTTCGCAATTTGAAATTTCAAAGATATATATTCTTATCAATTTCAATCGAAATAT TCTTTCCCGTCGCAAAAAGTTTCAAAATCTCTTGATCTTTCCCTCTCTCTCTCCCATCTGTCCAT CTGTTTATCACTCTTTAAAATGGGGTCAAGATCATTCCAAATCAGCCTCCTTCCCTCCTTCCCCT CTCTCCTTTCAAAATATATATGATATTCGGTAAAAGCAATTGAGG Found at i:10490239 original size:10 final size:10 Alignment explanation
Indices: 10490224--10490243 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 10490214 CTGTGTGTAG 10490224 TAAAAAAGTT 1 TAAAAAAGTT 10490234 TAAAAAAGTT 1 TAAAAAAGTT 10490244 CTAGCTGGAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30 Consensus pattern (10 bp): TAAAAAAGTT Left flanking sequence: Indices 10489724 -- 10490223 CTAACGCATTTTCTATACCATTTTGTTGTTTGTGTAAGCGGTGGGCGGCAAACGGGTTTTTTTGG CAAAAATTTCCGGCAAACTGGCAAATTGCTGGAATTTAAAATTTCCGGCAAATCGGCGAATTGCC GGAATTGAATTTTCCGGCAAATTGACAAATTGTCGGAATCAAAATTTCCGGCAAATTGACAAATT GCCGGAATCAGAATTTCCGGCAAATTGACAAATTGCCGGAATCAAAATTTCCGGCAAATCGGCAA ATTGCCGATTTGTACAAAGTTGTACAAAATGTAAAAAATGTAAAATTGTACAAAATAGATTTGTA CAATATGTAAAAAATACACGTATTTTCTGTATTTTTCGGCCACCGTATTCTTTGCGATTTCCTGA AGAAAAAACGTCTATAAAACCAACCACAAAAAACCTTAATAGTCCTTAATATAATTGCCGACGGC CTCTTTCTTCTCAATTTTACTATCCTTTTCATTAGCTGTGTGTAG Right flanking sequence: Indices 10490244 -- 10490743 CTAGCTGGAAACTTTCGCAATTTGAAATTTCAAAGATATATATTCTTATCAATTTCAATCGAAAT ATTCTTTCCCGTCGCAAAAAGTTTCAAAATCTCTTGATCTTTCCCTCTCTCTCTCCCATCTGTCC ATCTGTTTATCACTCTTTAAAATGGGGTCAAGATCATTCCAAATCAGCCTCCTTCCCTCCTTCCC CTCTCTCCTTTCAAAATATATATGATATTCGGTAAAAGCAATTGAGGGAAAGATTACCTGAATGA GAAAGTGTGTTTTTTTTGCAGACAGTTCCACCGCCGGCAGTACCTCCACCGGAGAGCAGTGCAGA CGAAGAGGAGCCACGTGCTAGCTCGAATAATAACTATTCGTCGACGTCTACAGTTGCAGCACCGA CTAGAGAACCGACGAGGGTTTCTACTTTGAAAGTAAGGAGGATTTTAAAATAAATTTCTACGAAA ATAATTACAGTTTTTTAAAAATAGGTCTCTGAAAAATGTTAAATT Found at i:10490377 original size:8 final size:8 Alignment explanation
Indices: 10490364--10490379 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10490354 TCTCTCTCTC 10490364 CCATCTGT 1 CCATCTGT 10490372 CCATCTGT 1 CCATCTGT 10490380 TTATCACTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.38, G:0.12, T:0.38 Consensus pattern (8 bp): CCATCTGT Left flanking sequence: Indices 10489864 -- 10490363 TTTCCGGCAAATTGACAAATTGTCGGAATCAAAATTTCCGGCAAATTGACAAATTGCCGGAATCA GAATTTCCGGCAAATTGACAAATTGCCGGAATCAAAATTTCCGGCAAATCGGCAAATTGCCGATT TGTACAAAGTTGTACAAAATGTAAAAAATGTAAAATTGTACAAAATAGATTTGTACAATATGTAA AAAATACACGTATTTTCTGTATTTTTCGGCCACCGTATTCTTTGCGATTTCCTGAAGAAAAAACG TCTATAAAACCAACCACAAAAAACCTTAATAGTCCTTAATATAATTGCCGACGGCCTCTTTCTTC TCAATTTTACTATCCTTTTCATTAGCTGTGTGTAGTAAAAAAGTTTAAAAAAGTTCTAGCTGGAA ACTTTCGCAATTTGAAATTTCAAAGATATATATTCTTATCAATTTCAATCGAAATATTCTTTCCC GTCGCAAAAAGTTTCAAAATCTCTTGATCTTTCCCTCTCTCTCTC Right flanking sequence: Indices 10490380 -- 10490879 TTATCACTCTTTAAAATGGGGTCAAGATCATTCCAAATCAGCCTCCTTCCCTCCTTCCCCTCTCT CCTTTCAAAATATATATGATATTCGGTAAAAGCAATTGAGGGAAAGATTACCTGAATGAGAAAGT GTGTTTTTTTTGCAGACAGTTCCACCGCCGGCAGTACCTCCACCGGAGAGCAGTGCAGACGAAGA GGAGCCACGTGCTAGCTCGAATAATAACTATTCGTCGACGTCTACAGTTGCAGCACCGACTAGAG AACCGACGAGGGTTTCTACTTTGAAAGTAAGGAGGATTTTAAAATAAATTTCTACGAAAATAATT ACAGTTTTTTAAAAATAGGTCTCTGAAAAATGTTAAATTTCAGATGTTTTTGAAAAAATTATCGA AAAAAATAGTTTTGTTTTAAGGCTTAATTTGTTTGAAAAATTAAAAAAAAATCGCTGTCAAGAAA AAGTAGAAGTTTCAGCGAGAAGAAAAAGAGAAGAAACAAAAAGAG Found at i:10490434 original size:8 final size:8 Alignment explanation
Indices: 10490421--10490438 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10490411 TCCAAATCAG 10490421 CCTCCTTC 1 CCTCCTTC 10490429 CCTCCTTC 1 CCTCCTTC 10490437 CC 1 CC 10490439 CTCTCTCCTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33 Consensus pattern (8 bp): CCTCCTTC Left flanking sequence: Indices 10489921 -- 10490420 CGGAATCAGAATTTCCGGCAAATTGACAAATTGCCGGAATCAAAATTTCCGGCAAATCGGCAAAT TGCCGATTTGTACAAAGTTGTACAAAATGTAAAAAATGTAAAATTGTACAAAATAGATTTGTACA ATATGTAAAAAATACACGTATTTTCTGTATTTTTCGGCCACCGTATTCTTTGCGATTTCCTGAAG AAAAAACGTCTATAAAACCAACCACAAAAAACCTTAATAGTCCTTAATATAATTGCCGACGGCCT CTTTCTTCTCAATTTTACTATCCTTTTCATTAGCTGTGTGTAGTAAAAAAGTTTAAAAAAGTTCT AGCTGGAAACTTTCGCAATTTGAAATTTCAAAGATATATATTCTTATCAATTTCAATCGAAATAT TCTTTCCCGTCGCAAAAAGTTTCAAAATCTCTTGATCTTTCCCTCTCTCTCTCCCATCTGTCCAT CTGTTTATCACTCTTTAAAATGGGGTCAAGATCATTCCAAATCAG Right flanking sequence: Indices 10490439 -- 10490938 CTCTCTCCTTTCAAAATATATATGATATTCGGTAAAAGCAATTGAGGGAAAGATTACCTGAATGA GAAAGTGTGTTTTTTTTGCAGACAGTTCCACCGCCGGCAGTACCTCCACCGGAGAGCAGTGCAGA CGAAGAGGAGCCACGTGCTAGCTCGAATAATAACTATTCGTCGACGTCTACAGTTGCAGCACCGA CTAGAGAACCGACGAGGGTTTCTACTTTGAAAGTAAGGAGGATTTTAAAATAAATTTCTACGAAA ATAATTACAGTTTTTTAAAAATAGGTCTCTGAAAAATGTTAAATTTCAGATGTTTTTGAAAAAAT TATCGAAAAAAATAGTTTTGTTTTAAGGCTTAATTTGTTTGAAAAATTAAAAAAAAATCGCTGTC AAGAAAAAGTAGAAGTTTCAGCGAGAAGAAAAAGAGAAGAAACAAAAAGAGCGTATGGAAAGAGA GCGAAGGGAATTGGAAGAGAAACGAGTACAAGAGGACGAAATGAA Found at i:10493645 original size:10 final size:10 Alignment explanation
Indices: 10493630--10493650 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 10493620 GGTATGACAT 10493630 AGTTTTTGAG 1 AGTTTTTGAG 10493640 AGTTTTTGAG 1 AGTTTTTGAG 10493650 A 1 A 10493651 AGCTGGGGGA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48 Consensus pattern (10 bp): AGTTTTTGAG Left flanking sequence: Indices 10493130 -- 10493629 AGGCCATTTATCAGCGGTCTTTGGCTTTTTCGAAAAATTGTTAAATGGAAAATTTTTGGGTTATT GAATAGTTCTGTAGTTGACCGTCAAAGTAAAGAGCTAGTTTTCACACATGGTGCATCGAAACTTT TGTAGCTGGCAGATCAATTGTGCTTGCTTTATTCAAAATTTTGTTTATGAACCAAATTTTTAAAA TTGATGGTATTTAAAAGTTGAATGAGAAATTTTTGGTCGATGCACCATGTTCAGAACTATCACTG GATCTCACTGCTCAAATTTACGAAATTATCGAAAAAAACTGAGCCAATCTTAAGGTGTCTCCAAT TCTGCGTCATCATCCTTTTCGTATTCTGCTTCCTCGGCTCTTTCGGCATCAATGCTTATCAGGTA CAGTACCCCAGTTTCGTCATTAAATGTTCGAATGTTATTTCAGTCGAAGCCCTGCCTTGGAATAA TGATATTCATCACACTCGTCGTTGGTTCAATCACAGGTATGACAT Right flanking sequence: Indices 10493651 -- 10494150 AGCTGGGGGAGAAGCCATATTTATGAATAATTATTCCAGTTTGGGCGCTCGCGCACGCTAATTTT TCGGAAATTTAATCCCCTCAATTTCTTGGCTCTTATGTTTTTCGCCCCGCTGTTTTTGATTGTGT AAACTTTGAATTTTCAGGCCTTTCTATGCAATTCTACAGAGATCTTCCTGTTGATCCATTGGTGT ATCCCATTTGTTTTGTGACTATTGGTAAGTGCTGAAAAATATTTAGAATTATATTTAGAAATTGC CAAACTTTTTGGAAAATTTTTTTAAAAAGAAATTGAAATTTCAATCTCCTAACAAACCTACTAAC TTTAGATACTTGAAAAATTGCCGAAAATTCAAGAATTTCCAAAATCTAAACAATTATGCTCACTT GACGTTTTCCCTTACCCTTGTTAAAATATTCATAATGCCTTAACAACTGTGTCTCTTCTTGAGGG AGCTCTCAAACCTTGAGAGCCCTCGCAATCCGAGCCCAATTATCC Found at i:10495062 original size:7 final size:7 Alignment explanation
Indices: 10495050--10495063 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10495040 CGACTCAGCG 10495050 TCTCTCT 1 TCTCTCT 10495057 TCTCTCT 1 TCTCTCT 10495064 ACACGACCGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57 Consensus pattern (7 bp): TCTCTCT Left flanking sequence: Indices 10494550 -- 10495049 TCATTTGCAATTCCCTCAATACTTTATTTTTCAGGAATTGGTCTCCTCTGGCTCTTCCAATTGCA GTTCAGCTGGTCCCGTTATTCATCGGCCGCTGTTCACCCGACGGAAAAAATTGCGTTCATTCTGG CTCACGATGCTCCTGGAATAGCCGCAAGCGCCGTGGTTATTGTATTGACATTCCGTTAGTTATTT ATTTTTGAAACATTTGAAAAATGGCAGTTTTTCAGTTGCCATGGGAGCTGCAATTCAAAATGGTC ATATGGTATCCTCATTTTTGGGAATTGCCTCCTCCGTTGCTATTCTTCTGGTATTCACCGTATTG TAAGTTTACTTGTTAGCAACTCCATATATTTGAACTCCCCTTATCTTCCAGCTTCATCTCCGTAT TCGTGTTCATCGGTGGCAGTCGCGAGGCTCGTGGAGTCAAATGGTACCAGATCTTCAAAACCGGT GACACGCATTTCACGGCGCCCCAACTCGCCTCCTTCGACTCAGCG Right flanking sequence: Indices 10495064 -- 10495563 ACACGACCGTCTCCTGGACGCCCGTCCGTGTGCATCAAGAGCCGTCGGAGCATTTGTGATAAGTC CAAAGATCCGGTATCCGATTATTATGCTGTGCACCGCCTATGTTTTCTTTGCGATCTATGGATTC TATAATACAGGGTATGTAATCTACGCAAATATGAGCAATTTTTAACGGTTTCCAGAATCGATATC AAAGAAGAGTACTTCCTGCCTGCGGGTTCATCTGAGAAATCATTCATCGAGCAGTACCGAGACCA GTTTGGAAAAACCACCCAATTCGTTGAACTAACTATTGAAAGCAGTATTGAATACCATGACCATG AAGTTCAGAATAACATATTTGATATTATGGATTTTGCAATTGTGAGTTCAGACGTTAAGCGCCAT AGACACATACTTTATAGTCTCGAACCATAGGTCATATGTATACCAAAAGACCCATATTCTCTAAT AATTTATGCTTCATAGGTAGCTTAGTTTGAACCACCGCAGCTATA Found at i:10500981 original size:9 final size:9 Alignment explanation
Indices: 10500969--10500990 Score: 44 Period size: 9 Copynumber: 2.4 Consensus size: 9 10500959 TATTTTCTTC 10500969 AATTTTAAA 1 AATTTTAAA 10500978 AATTTTAAA 1 AATTTTAAA 10500987 AATT 1 AATT 10500991 GAATTTTTCA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (9 bp): AATTTTAAA Left flanking sequence: Indices 10500469 -- 10500968 CCTCTTCTTCCACATTTTCCGTCTCATTTGCCTTCAAAATCAACCGTTCTTGCTCTTTTTGATGT CGTTCATCTTGTGATTGTACGTGCATTGGTTTACTTTGTTGTAGTTTGTGTAACAGTGTGAGGAA AATTGATTCGACATGATCTGCTTCTGATGCTAATTTGGCTGATGTTTCGAATAATGCCATGTTGT TACGGTCGGCGAACATCTGAAAATTGCGATTTTTTTATTTGAAAAAGTGGGGAAAATCGAAAATT TTGGGAGATTTTGGAAGATTTTTTCCGATGGTTTTTTTTCGATTTTAATATTATTTTTGTTTTCC TGTTTTTCAAGTTTTCTCAGTTTTGTCGATTTTTTGAATTGATTTTTTGAATTTCCAAGAATTGA ATTTTAATATAAATTTTTTTCCAGTTTTTCGAAATTTTCAAATTTATATTTCAAGAAAAAAAATT ATTTTATTTTTTTCTAGTATATTTTTAATTTAGCCTATTTTCTTC Right flanking sequence: Indices 10500991 -- 10501490 GAATTTTTCAGTAGAAAAAAGGGGAAGAAGTTTAAAAAAATTTTATTGAGTGATTTTTTTAATAT AAAAAAGTCCAATCAATATTTTCAAATTTTTTCCAAATTTTTCAATAAAAATTGTAATTTTTGTA GAAATAATGTTTTTTAATTAATTTTTTCTCAATCTCAATTTTTCCCTTTTTGTTAAAAAATTCCC AGAAAAATTAATGAAAATATTGGTTTTTTTAGCGAAATTTCGAAAAATAATTTTCTTCCAAATTT TTATAAGCACCTGAGCTTCATCAGTGGACACTCGATTTGTGCATTCCACGTCACACTTGTTGCCG ATCAGGATCCTCGGAACTTCACTATCCCCAACGAGACCATGCTTTTCACATTCTTTTATCCAAAG TGCCAAATCGTTGAATGACTCACGGCTGGAAATTAGAAATTTAATAGATGGGAAGATAGTACCGA AATTGAATATTTGCTCTCAAAAAGCGAAGTATTGAATTTTCATTT Found at i:10506686 original size:7 final size:7 Alignment explanation
Indices: 10506674--10506692 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 10506664 TACCCAATTT 10506674 TTGTTTG 1 TTGTTTG 10506681 TTGTTTG 1 TTGTTTG 10506688 TTGTT 1 TTGTT 10506693 GTTTACTTGT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74 Consensus pattern (7 bp): TTGTTTG Left flanking sequence: Indices 10506174 -- 10506673 TCTGTCCTTCCTTGTTGATGACGGTGTGGATGTGAGCCAAGTCGACGTCCTTTGGAAGAGTGAAC TGGCGAGTGAACGATCTGAAAATTTTTAATTAATTTTAATTCCAATAAATGAAAAATAAAATAAA ACCAACCTCTTGCTGAACCCGTGCTCGGTCTTGACCTCGTGGTGTCCCTCAATGGTGAGAACGTG TCCCTCAAGATTGACCTTCAACTCTTCCGGCTTGAACGCGGCGACGTCGAGCTTGACACAGAACT TCTGGGCGGTGTTCTCGACCTCGTTGAGCTGTTGTGGCACGATGTTGTTGAAGTTGTTGAGCATG CTGTGACGCTGAGCCCAGTATGGCATCATGTCCTCGAAGTCGCGGAAGAGTCCGGTTGGACGGCC AGTGTATGGGCAGAGAGAAGACATAGTTGAGTGAATAGGGTTAAGAATGAGGTGAAAAACGATGA ACGTCTGAGGAAAATGGCAAAATCCGCGCCTTTTATACCCAATTT Right flanking sequence: Indices 10506693 -- 10507192 GTTTACTTGTTTACATTTTTGTTGTTGTTTCGATGATCAGTGAGAGATCAAAATGTAGGTCAAAC ATTATATTTTACGAGAAATTGCGTATTTTAATAAAAATTATTTATTTTTTATCAGAATTTTGCAT TTTTTTTTCTCTAAAATCTTTCTCTGAAAATTAAATTTTTCACACAATTCTGTTTTAAAATTCCG CTTTTCTTTTAAAAAAATGCATTGCACGCAAAATGCGCCAGTGTACACCGTTTGACACGCTTCTC GTCTTCTATTCTACGTGGCCGTAAATCTACACAGATTTTATCAGATAATTTTCCAGGGTTTTAAA AAATATTTTAACGAACAAAATTATGCCGGCGGAGCTGGAAAGCGTTCGAACGCGACAAATAGGTG AGAATTCATGCTTGATATGAATAAAATATAAATAAATCTCCATATTTTCAGTCGCTTTACGGACG ATGATCAATTTGAATGAGCCCGTAGTCAATTCTGGAGTCAGAGAA Found at i:10506704 original size:8 final size:8 Alignment explanation
Indices: 10506691--10506706 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10506681 TTGTTTGTTG 10506691 TTGTTTAC 1 TTGTTTAC 10506699 TTGTTTAC 1 TTGTTTAC 10506707 ATTTTTGTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62 Consensus pattern (8 bp): TTGTTTAC Left flanking sequence: Indices 10506191 -- 10506690 ATGACGGTGTGGATGTGAGCCAAGTCGACGTCCTTTGGAAGAGTGAACTGGCGAGTGAACGATCT GAAAATTTTTAATTAATTTTAATTCCAATAAATGAAAAATAAAATAAAACCAACCTCTTGCTGAA CCCGTGCTCGGTCTTGACCTCGTGGTGTCCCTCAATGGTGAGAACGTGTCCCTCAAGATTGACCT TCAACTCTTCCGGCTTGAACGCGGCGACGTCGAGCTTGACACAGAACTTCTGGGCGGTGTTCTCG ACCTCGTTGAGCTGTTGTGGCACGATGTTGTTGAAGTTGTTGAGCATGCTGTGACGCTGAGCCCA GTATGGCATCATGTCCTCGAAGTCGCGGAAGAGTCCGGTTGGACGGCCAGTGTATGGGCAGAGAG AAGACATAGTTGAGTGAATAGGGTTAAGAATGAGGTGAAAAACGATGAACGTCTGAGGAAAATGG CAAAATCCGCGCCTTTTATACCCAATTTTTGTTTGTTGTTTGTTG Right flanking sequence: Indices 10506707 -- 10507206 ATTTTTGTTGTTGTTTCGATGATCAGTGAGAGATCAAAATGTAGGTCAAACATTATATTTTACGA GAAATTGCGTATTTTAATAAAAATTATTTATTTTTTATCAGAATTTTGCATTTTTTTTTCTCTAA AATCTTTCTCTGAAAATTAAATTTTTCACACAATTCTGTTTTAAAATTCCGCTTTTCTTTTAAAA AAATGCATTGCACGCAAAATGCGCCAGTGTACACCGTTTGACACGCTTCTCGTCTTCTATTCTAC GTGGCCGTAAATCTACACAGATTTTATCAGATAATTTTCCAGGGTTTTAAAAAATATTTTAACGA ACAAAATTATGCCGGCGGAGCTGGAAAGCGTTCGAACGCGACAAATAGGTGAGAATTCATGCTTG ATATGAATAAAATATAAATAAATCTCCATATTTTCAGTCGCTTTACGGACGATGATCAATTTGAA TGAGCCCGTAGTCAATTCTGGAGTCAGAGAACCGGTAGGCCGATT Found at i:10509941 original size:7 final size:7 Alignment explanation
Indices: 10509929--10509945 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 10509919 TCTGTAATTG 10509929 TTTAAAA 1 TTTAAAA 10509936 TTTAAAA 1 TTTAAAA 10509943 TTT 1 TTT 10509946 CCAGACCAAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (7 bp): TTTAAAA Left flanking sequence: Indices 10509429 -- 10509928 TAATTACAAATTTATGAAGAAAAAATACATGAAAATTGTCAAATTTCCCTAAAATGTATTTTTTT GAAAAATTTCGAAGTCACTTTTGGACTGCAATTTTTAAATAATTCAAAAAAATTCCACCTTTCAA CTATTTTTTTGTTGCAGGGATTAAGTGGAGAAAGTGAAGCAGCCGACGAAGCTCTCACCAATGTT CTAGCTGATACAACTGCAAAGCTTGGATCGACTGTGATGAGCCTTCCGGATTTGCTCGAATCAAA GAGGCTCATTGATTTGCACACGAATATTGCCACAACACTGCTTGACGTCATCAAAGAGAGAAAAC TGGATGTCTCTTTGAGCTCGAGCAAAAGCTGTTGCAACACTCACCGCTTGGTAGATCTTTTTTGT TGAATTTTTGAATAAAAATTGGCAGAAAAAACCATTTTAGCAGCTTTTTTAGTTAAAAATTGCCA CATTTGAAATAAAAATCATTAAAACTTCGGAAATTTCTGTAATTG Right flanking sequence: Indices 10509946 -- 10510445 CCAGACCAACCGGTAACCCAGTTCCTGAGCAATATTAATCACCAAGAAGACGTCCTTCGTGTGCT CATAATCGCATTTTTGTGCCAGGAAACTGTCAATCAGAATGGATATGATCAAATGATGAACTTGC TCCGTGAGCGAGGAATTGAAGAATCCGCACTGAAACATGTGCAGAAGCTCAAGTTCGTGAAAAAA ATTGTCGAAAAAAATCAATAGAAACTCGAGTTGAATTAAAAAATCTAAAATCTTGTAGAAAATTT TGTTTAAAAAATTGTAAAGAAATAATTTTGAGCTTAAAAAACCTTAAAATTTTTATTTATTTTTC CAAAAATTTATTAGAAAAAAAAAGTAAATAGCCCAGAAACTGACAATTTAAGTTGAAAAACCTGG AAAAAAACCAGAATAGTTCAAAATTTCGGCTTTTAAACTAAAAATCGTGAAAAAAAAGCGAAAAA AATGATTTTTCCATCTCTGGAAAATTTAAATTTTCTATTCTGTGA Found at i:10510192 original size:7 final size:7 Alignment explanation
Indices: 10510180--10510193 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10510170 GTTGAATTAA 10510180 AAAATCT 1 AAAATCT 10510187 AAAATCT 1 AAAATCT 10510194 TGTAGAAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): AAAATCT Left flanking sequence: Indices 10509680 -- 10510179 CGAATCAAAGAGGCTCATTGATTTGCACACGAATATTGCCACAACACTGCTTGACGTCATCAAAG AGAGAAAACTGGATGTCTCTTTGAGCTCGAGCAAAAGCTGTTGCAACACTCACCGCTTGGTAGAT CTTTTTTGTTGAATTTTTGAATAAAAATTGGCAGAAAAAACCATTTTAGCAGCTTTTTTAGTTAA AAATTGCCACATTTGAAATAAAAATCATTAAAACTTCGGAAATTTCTGTAATTGTTTAAAATTTA AAATTTCCAGACCAACCGGTAACCCAGTTCCTGAGCAATATTAATCACCAAGAAGACGTCCTTCG TGTGCTCATAATCGCATTTTTGTGCCAGGAAACTGTCAATCAGAATGGATATGATCAAATGATGA ACTTGCTCCGTGAGCGAGGAATTGAAGAATCCGCACTGAAACATGTGCAGAAGCTCAAGTTCGTG AAAAAAATTGTCGAAAAAAATCAATAGAAACTCGAGTTGAATTAA Right flanking sequence: Indices 10510194 -- 10510693 TGTAGAAAATTTTGTTTAAAAAATTGTAAAGAAATAATTTTGAGCTTAAAAAACCTTAAAATTTT TATTTATTTTTCCAAAAATTTATTAGAAAAAAAAAGTAAATAGCCCAGAAACTGACAATTTAAGT TGAAAAACCTGGAAAAAAACCAGAATAGTTCAAAATTTCGGCTTTTAAACTAAAAATCGTGAAAA AAAAGCGAAAAAAATGATTTTTCCATCTCTGGAAAATTTAAATTTTCTATTCTGTGAATACTATT GTCTAGCAATTTAAAAAACTGCATGAATTGTCAAAAATTACCAATTTTTCATCTAAAAAACTTAC GTTTTTCTAGCGAAATTCCTAATTTTATTTGATTTTTCCCGCATTGGAAATTTCAAAAAAAAAGT GATAAATGCTCTGAAAAATTTGAAATTTCCATTTTTAGACTTTTTCACTAACTGGAAAAACTGGA AAAATCAGCAATAATTGGAAATGTTAGAAATCGCCGGATTTTTGA Found at i:10510645 original size:9 final size:9 Alignment explanation
Indices: 10510633--10510652 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 10510623 CTTTTTCACT 10510633 AACTGGAAA 1 AACTGGAAA 10510642 AACTGGAAA 1 AACTGGAAA 10510651 AA 1 AA 10510653 TCAGCAATAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.60, C:0.10, G:0.20, T:0.10 Consensus pattern (9 bp): AACTGGAAA Left flanking sequence: Indices 10510133 -- 10510632 TGAAAAAAATTGTCGAAAAAAATCAATAGAAACTCGAGTTGAATTAAAAAATCTAAAATCTTGTA GAAAATTTTGTTTAAAAAATTGTAAAGAAATAATTTTGAGCTTAAAAAACCTTAAAATTTTTATT TATTTTTCCAAAAATTTATTAGAAAAAAAAAGTAAATAGCCCAGAAACTGACAATTTAAGTTGAA AAACCTGGAAAAAAACCAGAATAGTTCAAAATTTCGGCTTTTAAACTAAAAATCGTGAAAAAAAA GCGAAAAAAATGATTTTTCCATCTCTGGAAAATTTAAATTTTCTATTCTGTGAATACTATTGTCT AGCAATTTAAAAAACTGCATGAATTGTCAAAAATTACCAATTTTTCATCTAAAAAACTTACGTTT TTCTAGCGAAATTCCTAATTTTATTTGATTTTTCCCGCATTGGAAATTTCAAAAAAAAAGTGATA AATGCTCTGAAAAATTTGAAATTTCCATTTTTAGACTTTTTCACT Right flanking sequence: Indices 10510653 -- 10511152 TCAGCAATAATTGGAAATGTTAGAAATCGCCGGATTTTTGACATTTCTAGTGTCATTTAAATTTT CCAAAAAACTACAACGAAATTATAGATAAATATGAAAAAATCATGAAAAAAAAAAATCAAATTTT AGCCTATTTCAACTCTAAGAGTATATTTTTTCTGTGATTGCCGACATTCTCAAATCCCAATTTCC TAATTTTCAGATCCATTTCCCAACTTGGATCCCGAGCCGCCAACTCTGCTCACACAGAAGAGCAT CAAGGTGCTGGAACAAAAACGATAAGCATGTTCGGAAAGCTTCTAAGTCATAGTTCGAAATTTGT AATGGAAGGAGTCAAGAATTTGGTGCCAAAAGAGCACAATTTGCCACTTACAAAAATGATTGATT CACTGAATACGCCACCATCATCAACTGGAATATCATCAGCTGTTGGAATTAATCAAATGATTGGA GGATCATCACAAGGACCTGATATTGATGATATTTATTGCTTTTTC Found at i:10512707 original size:7 final size:7 Alignment explanation
Indices: 10512695--10512710 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10512685 TAACCGTCGA 10512695 AAATTTG 1 AAATTTG 10512702 AAATTTG 1 AAATTTG 10512709 AA 1 AA 10512711 TCGAATTAGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (7 bp): AAATTTG Left flanking sequence: Indices 10512195 -- 10512694 TTGAAAATTCGCTCGAAATTCAAATTTGCATAGTCCATTAAATTTAAATAAAAATTGATTAATTC CTTCTCATTTAGGAGAAATTTTTTTTGTTGGTTTGTGAAATTTTTCTAATTTTCAGACTATTTTC GTGCTTTAAAACTATTTTCCAACACACTTTTCTCTTTCTAAATCCACTATTTTTCCAGGTAAACG AAAAAATCTGATGCGAGTCACCTACGGATGCACGGAGCTCGTGAATCCCGCACAATTCTGCGATC AGGTTAGTTGTTGCTCTCTCTCTCTCCCGTTGACTGACTTATCTGGCGATTCCCCGTATTTTTTT TGTTCGCCGCTCGAATTTTGACGCAAAACTACTGACTCTTGCTTCTCCTTTTTCGGCTCTTGATT TGATTTTCCGAAAACGTATCCTCCTGCCGGCTCCTTCTCCTTGTCCTGTTGCCCGAATTCGTGTG TGTGTGTGCTCTTTTGCTTTTTCTTTCTGTCGCCATAACCGTCGA Right flanking sequence: Indices 10512711 -- 10513210 TCGAATTAGAATCGAAGAAAAGGAGAGGAGGATCTGTCAACACTTTTTGAAATTTGATCTACGAA GTATATATGGATAACTTTGTTAGGAATCTGTTTTCTGGTTTTCCATAGAAATTGGCTGAAAATTT ATTTTTAATTTGATTAAAAAGAAAACGCTTTTTATAGAAGCTCCAGGAAATTTAGGCCAAACTGC GAAAAATTTAGAAAAAAACACTTAAAACTTTAAAAAATCATCCTTAATTTTCCCAAAATTTTGAG AAAAAAATCTTTAGAATTCAGATTCACAGTTCCTCGACAAAATTGAGAAACAGATAAGGAAATTT GGAAAAAAAGTTGAAAAATAAAAAAACTTAAAGAAACCAGAAAAAGTTCAGAAAAAGTCTCCGAA AAACCAGAAATTTTTGAGGAAAACTCGAAGAAATTTCTCAAAAATTCAGAAATTGATAATTTTGA GCTCACATAGTAACAAAATATATAATACATACATTAAAAAATTCA Found at i:10516163 original size:9 final size:9 Alignment explanation
Indices: 10516149--10516167 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 10516139 AAGAAGAAGC 10516149 CGACTACTA 1 CGACTACTA 10516158 CGACTACTA 1 CGACTACTA 10516167 C 1 C 10516168 TTTTTTCTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.32, C:0.37, G:0.11, T:0.21 Consensus pattern (9 bp): CGACTACTA Left flanking sequence: Indices 10515649 -- 10516148 CAAAACTAAAGTATCACACGACTGCAAAAAAAGTTGCATGACCTCACTTTCCGGATGCATTTTTA GGACACACAAGATGACGTGATTCGTTCTTACCCCGTCATCATTATCTCATCCCCGCTATTCTTCT TCCGCCGTTGGATTTTTTTGCAATTCTGCGTTGCGGCGACGGCGGCTCGTCTTCATTTGTGTGTG TGTGTGTGTGTACTTGTAAGTGTGAAAAGAGGTTTTCTTCTTCTTCTTCTTCTACTCCGAGGATT CTTCCTAGGCGCGGTGGTCCTGGAAAACGACGGATAGAAGAAGAAGAAGCAGAAGTAGTTTCTGG GTCCGCCACATAAGAGGAGACACTTTCTTTTTTTCTTCTTCTTATTCGTGCGCTTCTTCTTCTTT TCCTACTTTGTTTGGAAAGTGAGTGAGGCACTGGACCACTCGAGAAGAAGAAGTAGAAGAGGCCA CCCCATTCGCTTATCACGGGATGCTTATTGTCTTTAAGAAGAAGC Right flanking sequence: Indices 10516168 -- 10516667 TTTTTTCTCATTAAGGAATTTTGATTGCTGATTTGGTTGTTGCTGAAAATACTTCCAACCAACAA AAAAACAAGCATCCTGATGAGCTTAAACAATTGGATTGTTGTGCGTGCCGAAAACAATTAAAGAA ACGCTGAAATTTGCATATTTCTTTGGTTCCTTGTGTGCTCCAAAGACGTGAAAATGCATTTGGCA GATTAGTCGATTAGGGGGGATTCGGCACGCCTTTATGGTGGTTTTGTTCCCCTCCACCCGCTTTC TCAATCGACTTTAAGTGCACATTGGGATCCGCGAAGGCCTTATTCGATCATTCATCGCGGAGCAC AAGACCGTGCGGGTTGTTGTCAAGAGGAGTGTGTGTGTGTGTCTAATGGAGCTGGAGCAGCAGAA GCACACGTCAGTTCGGATATGTGTTTCGCCGGGTCCCGGGGTCGATCCGAAATGACATAACTCCT GCGCCAAAAGCTCTATGTGTTCAGACGAAATTTAATGACTCGTGA Found at i:10517047 original size:8 final size:8 Alignment explanation
Indices: 10517034--10517049 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10517024 CGCCGTCGTC 10517034 TTCTTTTT 1 TTCTTTTT 10517042 TTCTTTTT 1 TTCTTTTT 10517050 CTTTCTTCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (8 bp): TTCTTTTT Left flanking sequence: Indices 10516534 -- 10517033 TCTAATGGAGCTGGAGCAGCAGAAGCACACGTCAGTTCGGATATGTGTTTCGCCGGGTCCCGGGG TCGATCCGAAATGACATAACTCCTGCGCCAAAAGCTCTATGTGTTCAGACGAAATTTAATGACTC GTGAACTAAAGAAACTAAAGGAACTAAAGCTCCCCCCTTCAGGGCAATCTATGGGAACATGACAT ACTATTTGTGGAAAGAAGGAAACAACTGAAATGGAAAACAAAAGTGGGCGCCCATAGAAGAAGCT TTGGTTTCAAGACGTCTAATAACTGTGAGAACGTGTGTTTGGGGGGAGCCGGTCGAAAACCGACG AAAAAACTTTGTTTGGCTCTACTACGAGCCTCTCCTTCTCCTCAGTTTCCACACCGCAAATAGTT TATTCCACTTTGCTCATCGCTTCTTCCGAATACACTTGCACAATCTGTCTCTCCACTTTTCGGAG GGTTTGAGCTTCTTCTTCTTCTTCGTCTTCACCGCCGCCGTCGTC Right flanking sequence: Indices 10517050 -- 10517549 CTTTCTTCTTTGTCCGGACACGGTGCTTAAAAAGTACACGAAACAAGATGGTCTTCCATATTTTT TTTGTCATTGAAAAAAGTCCTTCTCTATTGCGGAAGTGTGAGTTGCTCGGCTGGAAGGGATATCA AGAACCAGGCGATAGTAATAAATGTATATATTCGCCTCATTTCCTTTTACTTTTTTTTTTCGCAA AAAGTTCAAACTTCGGAAAAGTCGGAAGCTGGAGCAGGTTTATGATGTTTCGAAAACGTTTTGCT TTTCCTTAGTGTCTTTTAGGTAAAGCATCATGCCTACGTGCCTGCACACTGCCTATTTTCTGACG TAAAACTTCTACGTTCATTCTCTGAATTTATCGAAAGATCAACTATAAAGTTTAAGCTGAAAGGT AGTCCTGGAGGCAGGCAGGCATTAGGCAGGTGTAGGCAACAGTACTATAAAAATATTCTAATTAT AAATATATTCAAAAATAATTTGGAAAATGGTCCCATTGATTGATT Found at i:10520249 original size:9 final size:9 Alignment explanation
Indices: 10520237--10520255 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 10520227 GAGTGGGCAT 10520237 AGTGAGCTC 1 AGTGAGCTC 10520246 AGTGAGCTC 1 AGTGAGCTC 10520255 A 1 A 10520256 ATTGATTGTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21 Consensus pattern (9 bp): AGTGAGCTC Left flanking sequence: Indices 10519737 -- 10520236 AGGCCATGTTGCAAAAGTCCACGTCACCTTGAACAATATTCGATAAAAAAATAATCTGAACTTGA AGCCAGAAGTGTCATTTTCAGACGTTTGAAACATTTAATTCCGCGTTCAAATATAGCTTTTTCAA GTTCTCGGGACTTCATCCCGTCAATAGTGGCCGCGTGGAAGATTTTTTAAAGTTGTCTCGTCCAC GACTGATGGTAGCGTTTTTTGAAAACTGTCGGTGATCTATCCAGCTACCCAGTCTGGAAGAGTTT CCCTAGTTTCTCGTACACGTACACGTGGTGTCAGGCTTTCTCATTGCGGTTTGATCTACAGAAAA TGCGACGTCAGCTGAAAAGTCTGCGTCTCTTCTAACGCAATTTTCGAAGATCATATCAAAATGGG ACATTTTGACACCACGTGCACGGGTTGTGACTCTTCCACAAGTGGTCGGCTAGTGGACAAGTTTT CCAAGTTTCTCGGCCATCATGGGTAATTACAGTTAGAGTGGGCAT Right flanking sequence: Indices 10520256 -- 10520755 ATTGATTGTTCCCGATGTCGTTATGCAAGCTACTGAAAGAAATCTAACTGTGATCTCCTTCAATC CCCCAAACTCTTCCACAAAAAGGACTAGTTTTCCAAGCCATTCGGCCATCAGCTCCTTGATGCCC TTTCCACGTGTTTTTTTTTGAATCTCTGTACTTTCGCCCATTGTACTAGATGCTATCTAACAAAT CAATGACGTGTTTGATCAATGCAGTGACCAAGAGGGTCCCCCATCCGTCTATACTCTTTTCATTG CGGACCCCTTCCTCTCCCGGGACAGGAGGGAACAGTTGGGATCCCCAGCGCCTCCCCGTTACCTC TGTGTTCTCCGTGTTGGCTCAACTTGTGCGTGTTTTACATCTCTCTGTCTCTCTCTCATCATCAT CATCTTATTCTGTGCTCCCGCTAACCGATTGGCTCATTCTCTTCGGCTCTTGTCACTAACGAATC GCTTTTCACACAGAGTGATATAGGAGAAAAACCTCCCCAACATTG Found at i:10528746 original size:8 final size:8 Alignment explanation
Indices: 10528733--10528748 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10528723 TTTTCAGATT 10528733 AATTTCAG 1 AATTTCAG 10528741 AATTTCAG 1 AATTTCAG 10528749 TTCTCCGTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38 Consensus pattern (8 bp): AATTTCAG Left flanking sequence: Indices 10528233 -- 10528732 ATGAAACATTTTACAGGAAAATACGTACGCCTGGCGCTGGAAGTAATATTGGTTCGAAATATGGG CTTCTACACTATGAACATCGTCATCCCATCCATCCTGATCGTCACCATATCTTGGGTATCATTTT GGTTGAATCGAGAAGCTTCGCCGGCTCGAGTTGGATTGGGTGTGACTACTGTGCTCACAATGACA ACTCTGATCACTACAACCAATAATTCGATGCCAAAAGTGTCTTATGTCAAGGGTCTGGATGTGTT TCTTAATTTTTGGTGAGTCTGGGATTTTGGTTGAGAGATTTATTTTCAAATTAAAAATTCCAGTT TCGTAATGGTATTCGCCTCGTTGCTCGAGTACGCCATAGTATCCTACATGAATAAACGACTGGTC CTCCGACGGGAAAAACGAAGAAAAGCCGCCGAACAACAGCAGCGAAACGAGATGCCAATGTTCAA CGCGAGCCCGAAGGCCGCCAATAATAATGTGAGCATTTTCAGATT Right flanking sequence: Indices 10528749 -- 10529248 TTCTCCGTTTTTTGTTTTAAACACAAACACATTCTTATTTAGTCATACGAAATGACACTTATGTC GCAAAATTCGACGCCTGCCAAAAGCTATGTACAGGTACTACCGAAGGCTACGGCTATTGTGAATG TCGTGTCGTACCAATCAGAGAGCACATTTTAGAGCAAATAATTATGTTGTCAATTGAGAAGGTGT GGTGCGAAAATTGCTGAAAATTGCAAAAAAAAATTTCTCGAAAACCCCCTCTCAATTGACACCTT CCCACCCGAGTCTTCATTAGAATGTGTCTGTATTTTTCCACGCTTGTAAAGCAGTCAAACAGCAC ACCACATTTGTGATGTGGCCGAGTTTTCTCAATCGAGGCGGCCACGTGACAAACTTGTGCACAGA GTGTGTGGTAGATTTTCATGCTTTTGAGAGCACCTATTTCCTTTGAAAGTAATCAATAAAAAGTT TAAATTTTTTAAGGCTGACTTGTACTTTGCCGGACACAATTCCTC Found at