TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:103779 original size:8 final size:8 Alignment explanation
Indices: 103768--103783 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 103758 AAATAGGTGG 103768 GTAGGCAC 1 GTAGGCAC 103776 GTAGGCAC 1 GTAGGCAC 103784 AATAATACCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12 Consensus pattern (8 bp): GTAGGCAC Left flanking sequence: Indices 103268 -- 103767 TATCAGTCGTTTTTAGAGACTTAATGACTCCTCCTGCTGCTGTGCCCCACAAACTTTTTTCTCCA ACTTTTTGTGCAATTTTCTAATCTGTTTGTTTGAGTTTTGGATTTTGGGGGAGGCTAACCGCAAC TGCTACCATGTCAGTTTCTCGGAATACCAAAAGATTCTCGCGATTTGTACCTTTCTATCTGCCTT CCCTTAAGGAGGCCTACGCCTGCCTACTGCCTACCCAAGTGCCTATTCTCTTGCCTAATGCCAGA GTGGTTTTTTTTAATTCCTCAACTACAGTTTCACAATAAATCCAAAAAGGTGTGTAGGTAGGCAC ATAAATTAGCCTGCCTTCGTGCAACGCAACCTACGCCTACCTACCTACGCGTTTTTTGTGCCTAC GGGTCAAACTACAATAACTCGAAAATAGGTGTTTATCACGTCTATAAACAAAGTGATATTAATAT CCCAATTCGTAACTGGGCTCGTAACAAAATGTATAAAATAGGTGG Right flanking sequence: Indices 103784 -- 104283 AATAATACCTGCCTACCAAGTGCCTACCTGCGCCTACCTTGGGCCTACACAGTATATGATAGGAA GACATGCAGGCAGAAACAATGCTACTTTCTTATACCCTTTTTTTTACAAAAATTTAAAAATACTA AATAAATTCAATTTTTCAGCGGATGACGATCACCCTGTAGAGGACATAATGACATCCAGAAGCAA CTCCGGTCCCGGAATTCAACGTCGTAGAGGTATGTAGGCATATGCAAGTAAACACCTAATTTATC AATTCAGGAGCGATAAAACATGCGCGAGTACACGAGATTCGCGGCCATCAGTTCGTCGCCACCTT CTTCCGACAACCCCATTTCTGTTCGTTGTGCTCCGATTTCATGTGGGGGCTCAACAAACAGGGAT ATCAGTGTCAGTTGTGCTCGGCCGCCGTGCACAAAAAATGCCACGAGAAAGTGATTATGCAGTGC CCGGGAAGTGCAAAGAATACAAAGGAGACTATGGTGAGTTGGGCT Found at i:108726 original size:7 final size:7 Alignment explanation
Indices: 108714--108727 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 108704 TTTTAACAAT 108714 CGGCTAA 1 CGGCTAA 108721 CGGCTAA 1 CGGCTAA 108728 TTTCAAAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14 Consensus pattern (7 bp): CGGCTAA Left flanking sequence: Indices 108214 -- 108713 ATTGCTTCTTCCGAGGTGTCGACTGGAAACGGTTTGAAAATCGACAGGTTCCGCCACCGTTTAAG CCGAACATTGTGAGTTTTTTTTTAATTTAGGGATCTAAAACACCCCTGTTTTCCAACCCTGCCAA GTTTTCTGAAAATTTGAAAAATTGCACAAGTGGCGCAGTAGGTAATAGGGTTGACTAGTAATTTC AGCACCTGGATTCGACCTCGGGTGAGGCGGTATATTTTTTGCACGTTTTTTGGAGCTACTAGTTT CAAGGGCCCAGCATGCGTTTTTCCAAAAAAAAACTGAAGAATTTGTCCTAAAAATCTATCGCTAC ATTTGAAAAATTTGTTCTACAAATTCAGTACTAAAAATTACGTCAATGCCGGTTTGTTATCGAAA TTTGAAAAATTGCGCAAGTGGCGCAGTAGGTATAGTATATAACAGGGGTGTGCGGATAACCGATT TTTTCGGCTAACGGATAAATCGGCTAACGCCGATTTTTTAACAAT Right flanking sequence: Indices 108728 -- 109227 TTTCAAAAATTTCGGCTAACGGATAACTCGGCTAAAATTTATCGGTCGAATCGGCTAATTTTCGG CTAATTCGGCTAATTCGGCTAATTTACAAGAAAAGTAGTTAATTTTTCTGTTCTAGCTAATTTTG GGAGCAAGACAAGGCAGTGTACCCGACTTCCATATCTGCAGTGCATAGCACTTGAAGAACGGATC GTCCCTTCTTTTTTAAAAATAATTTTTCTTTTCCGATACAGTAGACAATTTTAAAATAACAGTTT TATAAGATAGAAACAACTACAAGAAACACTAAGAAACAATAAGAAACAACAAAGAACAGTAAAAG ATCAGGAGAAGGAAATATTTTCGAAGAAAGATAGTTTGTAACAAAAAAGACTATTAATTGATTTA ATCATCGAAGGAAGTTTGACTTCCATATCCGGATTCATTAAACGAATGTTTTTGTTCAAAGTCAA AAGCATTTTGAAGTTTTCTGATGTCAACGTTTTTCGATATTTAGT Found at i:109827 original size:9 final size:9 Alignment explanation
Indices: 109815--109839 Score: 50 Period size: 9 Copynumber: 2.8 Consensus size: 9 109805 AATTAGCCGA 109815 TCGGCTAAT 1 TCGGCTAAT 109824 TCGGCTAAT 1 TCGGCTAAT 109833 TCGGCTA 1 TCGGCTA 109840 TTATCCGCAC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32 Consensus pattern (9 bp): TCGGCTAAT Left flanking sequence: Indices 109315 -- 109814 ACGAGGGTATGAAGATTTACTCAAAGGATTCAACCAGTAATCTCTGGGAAAAATTGATTCTACTG CAGTAGAAAGATATCGGGTGACCTCCATTTTCACTGTTAAACTTTGATCAGTTAACGCTATATGC TTTCCACGTGACTTGATCTTCTCCTGCAAATCAATCCATTAAATTCAATTTTTTCCAAATTTTAT TTACCTGAATGTAAAGCTCAAAGTCCGTTTTCTGAATTTTCGCAACAGGTTCGGTTACTTCTGAT GAATCACCAAAGTCATCATATTCAGAATCTACGTTGCTGTATGGCTCATCGTCTTCCTTTTCGAC GGCTCTAATAAACTCCAACACTTCATCCTGATCCGAGTAGATATCCTGAAAAAGTTGTATGATTT CACATGGTATTGTATCAACGTCATTTTTCAGTAATACCTTCCAGCGAGGATCAAGAATTGTAGAA AACTTCAAATATTTGCATTGCGAGTACTTTAGCCGAATTAGCCGA Right flanking sequence: Indices 109840 -- 110339 TTATCCGCACACCCCTGGTATATAGGCTTGTCTGGTAATCTCAGCGCCTGGGTTCGAACCCGTAT GGGGCTAAAATATTTTAACAAGTGTTTTTTGCAACTCATAAAGTTCCAGGTTCCCTAAAACCTCC TTATTTTGCACTTTTTAAATATTTTTCTTTAGAAATCCAACTCGGACGCCTCGAACTTCGACGAC GACTTCACGAACGAGAAGGCGGCGTTGACACCTGTGCACGACAAGAACCTACTGGCTTCAATCGA TCCTGAAGCATTCCTTAACTTCTCTTATACGAATCCTCACTTCTCAAAATAGTTGAAATCTCATT TAGCAGCGTTTTTCATTCGTTTTTTTTGAGTCACCACGATTTTTTGAGAAAAAAATCCGTGGATA TATCCCTGGTAAAATCCTAGGTAGTTGACGTTCACGGAATTCTTGAAATCCATGAAGACTCTTCG CTCAAAATCTACTGAAAATTTGAATTTCTGGAATTTTTGTTTTGG Found at i:112124 original size:8 final size:8 Alignment explanation
Indices: 112111--112127 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 112101 GGGCATACAA 112111 AGAGATGG 1 AGAGATGG 112119 AGAGATGG 1 AGAGATGG 112127 A 1 A 112128 AAACCAGTGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.47, T:0.12 Consensus pattern (8 bp): AGAGATGG Left flanking sequence: Indices 111611 -- 112110 CTCAAACCCTCAAAATAGAGGGGGGTGCTATAGAAGTTGGACGCACTGTATTTTGTGCGCTTTTC TATGCATCTTATCGTGTATTTTTTCATTCATAAACTTATTGTACTCGTAAATAAAAAACTTTTTC AGCCCCTTGACTTGTTTCAAACCTTTTTCTTTTGTTTGAAAGCTTTGAACTTTACTTTTGAAAAA AGGAATAAGAAACTCACTGATGCTCGCCTTGAAGAAGTGCCACGCGGTAATAGTTAGTTTAGTCG ATGCACCATGAATTATAATGCAGTTGGTACAGTGGGGTTTCTAGCCTCTGAGATCAGCTCAGAGT GAATTTATTGGAACACGACTTATAACAATAGAAACGAATGGATCATGGGTGATAAGATGGAAAAC GGGGAATTGGATGAGGGTTCAGTGGAGGAAGACGGGGGTTTGACGATAACTGTACCGTCCTCTCG GACGGGGGAGATTTTATACTCCCAGTGACGGGGCGGGGCATACAA Right flanking sequence: Indices 112128 -- 112627 AAACCAGTGAAGAGAAATAGGGGAGAAACAACATGGTTGATTGGATTGGAAGGAATGCACTTTGT CAACTGAATCTAAGTGGGATTAAAGTGCAGATGAGCAATGGTTTAGGAATTTAGGAAAAAGGGTA CGGAATCGCGTCCAAATATTTAGATTTTATATTATGAAACAAAATAGTCCAATCAGCATCAAATT GGATGCTCAACTTTTTAACAACAATTATGTGACCCGAGAGGACTGGGATATAATATCTGGGAGCA ATAGGATGCAAGGAGATTCACATTATTGGAGTATATAATATAAAACATATCCAGACGAGCGGACA GCGTTGGCCACGTTTTCTTTCGATACATCACGTAATTTATCATCGGAGCAGCGCAGCCAGCCATC GTTGTCGAGCGATTTCTTTGTGTAGGCAACGTGATGTCCTTTGTTCGGCGAACTTCCGAGGTGAC ATACAACCGAAACCAGTGTATATCTTCTAGGAGGCGCATCGCCTC Found at i:112247 original size:8 final size:8 Alignment explanation
Indices: 112234--112249 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 112224 TGAGCAATGG 112234 TTTAGGAA 1 TTTAGGAA 112242 TTTAGGAA 1 TTTAGGAA 112250 AAAGGGTACG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (8 bp): TTTAGGAA Left flanking sequence: Indices 111734 -- 112233 CTTTTTCAGCCCCTTGACTTGTTTCAAACCTTTTTCTTTTGTTTGAAAGCTTTGAACTTTACTTT TGAAAAAAGGAATAAGAAACTCACTGATGCTCGCCTTGAAGAAGTGCCACGCGGTAATAGTTAGT TTAGTCGATGCACCATGAATTATAATGCAGTTGGTACAGTGGGGTTTCTAGCCTCTGAGATCAGC TCAGAGTGAATTTATTGGAACACGACTTATAACAATAGAAACGAATGGATCATGGGTGATAAGAT GGAAAACGGGGAATTGGATGAGGGTTCAGTGGAGGAAGACGGGGGTTTGACGATAACTGTACCGT CCTCTCGGACGGGGGAGATTTTATACTCCCAGTGACGGGGCGGGGCATACAAAGAGATGGAGAGA TGGAAAACCAGTGAAGAGAAATAGGGGAGAAACAACATGGTTGATTGGATTGGAAGGAATGCACT TTGTCAACTGAATCTAAGTGGGATTAAAGTGCAGATGAGCAATGG Right flanking sequence: Indices 112250 -- 112749 AAAGGGTACGGAATCGCGTCCAAATATTTAGATTTTATATTATGAAACAAAATAGTCCAATCAGC ATCAAATTGGATGCTCAACTTTTTAACAACAATTATGTGACCCGAGAGGACTGGGATATAATATC TGGGAGCAATAGGATGCAAGGAGATTCACATTATTGGAGTATATAATATAAAACATATCCAGACG AGCGGACAGCGTTGGCCACGTTTTCTTTCGATACATCACGTAATTTATCATCGGAGCAGCGCAGC CAGCCATCGTTGTCGAGCGATTTCTTTGTGTAGGCAACGTGATGTCCTTTGTTCGGCGAACTTCC GAGGTGACATACAACCGAAACCAGTGTATATCTTCTAGGAGGCGCATCGCCTCTCTGAAAAAAAG TTGTAGTTTACGTAACAATCACTTTTAGTCGTACCATATTATCCTTTTCGTGCAGCTCTCCGTGC ATTAAACGCTCATTATTGTTTCCTTTTTGCGATGTCATTGTCGAC Found at i:114812 original size:9 final size:9 Alignment explanation
Indices: 114798--114816 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 114788 AGCAGGGATC 114798 CGCAGACAG 1 CGCAGACAG 114807 CGCAGACAG 1 CGCAGACAG 114816 C 1 C 114817 TCAATGGCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.32, C:0.37, G:0.32, T:0.00 Consensus pattern (9 bp): CGCAGACAG Left flanking sequence: Indices 114298 -- 114797 TGTTGTTCTTGATATCACATGGTTGCGTTTGATTGATGTTGAGGGAGTTATCAAGGAATCGAATT TTGTACCGGACCATACGATATAGGTTCTCACAGCGAACAACCATCGGACCACATGATGACATGGC TTGCAAAGTTGAGTTATAGTAACACGAGTTCCCGGTGTTAACTAATCTGAAATTTGAATTAACAA AAAAGACTAGCAAATCTGCGATTTGCCAGGCTTCGCAGTGGGGTGTGGCGTAGATTGTAAAAGTG CAAAATTTCTAGTGCTATTCAGTATTTGAACCAAAATATAATGGTGTTTTCAAGTGTGAAAAATA ACGACAAATGCAACATTTCACTTTTTGGAAAGACGTGAATGCTCAAAACTTCTCTGCCGGGTGTC TCACTAGCGGGCGGTCGTGTGTTTTTTCCTCTCCTCTCGTCGTTGTAAATTATCGATTCGATAGT TATGACGAAGAATAAAAACCAGGCCAAAAAACGCAAGCAGGGATC Right flanking sequence: Indices 114817 -- 115316 TCAATGGCAACTAATCCGGTAGAAGAAGAAATGGTACCTCTTTCTGAGTTCCTCAAGCTCAAGGA GTCTTTCAACGCGATGAGTGCAAGAATGGACAAAATCCTGTCTCTGGTGGAATACATTATTCCAC TGAAGACCCATTCGCACTCAGAGCTTGATATTCCAATCTCTTCTGAAAGCGTCGCCAACCTTTCC GACTCATCTTCTTCGTCACTCTCTTCTCTCAACTATTCAAAACATCCTACTCGTTGAACAGTATT GCTCGTGAGCAGCAAGCAATGAAAGATAAGGAGACACGTGCAGTTCTTGAATTATTACCGGATGA CAAAGATGACAAAAACCAGGACGAGAAAACCTTGGCTATTATTAAAAGGTGGCTTCTCTGTACGA ATTCAATCCACCTATTTCAGTATTCCGTCACCAGTGCAAATCAGTAATGCGTCCCCTCAAAATCC AATTTGACACCAAAACCGACAGAAACGCGTTCATCAAAATCTACA Found at i:115151 original size:9 final size:9 Alignment explanation
Indices: 115137--115154 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 115127 ATTATTACCG 115137 GATGACAAA 1 GATGACAAA 115146 GATGACAAA 1 GATGACAAA 115155 AACCAGGACG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11 Consensus pattern (9 bp): GATGACAAA Left flanking sequence: Indices 114637 -- 115136 ATTTCACTTTTTGGAAAGACGTGAATGCTCAAAACTTCTCTGCCGGGTGTCTCACTAGCGGGCGG TCGTGTGTTTTTTCCTCTCCTCTCGTCGTTGTAAATTATCGATTCGATAGTTATGACGAAGAATA AAAACCAGGCCAAAAAACGCAAGCAGGGATCCGCAGACAGCGCAGACAGCTCAATGGCAACTAAT CCGGTAGAAGAAGAAATGGTACCTCTTTCTGAGTTCCTCAAGCTCAAGGAGTCTTTCAACGCGAT GAGTGCAAGAATGGACAAAATCCTGTCTCTGGTGGAATACATTATTCCACTGAAGACCCATTCGC ACTCAGAGCTTGATATTCCAATCTCTTCTGAAAGCGTCGCCAACCTTTCCGACTCATCTTCTTCG TCACTCTCTTCTCTCAACTATTCAAAACATCCTACTCGTTGAACAGTATTGCTCGTGAGCAGCAA GCAATGAAAGATAAGGAGACACGTGCAGTTCTTGAATTATTACCG Right flanking sequence: Indices 115155 -- 115654 AACCAGGACGAGAAAACCTTGGCTATTATTAAAAGGTGGCTTCTCTGTACGAATTCAATCCACCT ATTTCAGTATTCCGTCACCAGTGCAAATCAGTAATGCGTCCCCTCAAAATCCAATTTGACACCAA AACCGACAGAAACGCGTTCATCAAAATCTACAACAAGGTCATTAAGAAAGAAGAATTTTCGGATC TCACCAGAAAACCTAGAGCCAGAAGAGACTTGACGTTTGATGAGCTGGAAACTCTGCGTGCTAGC CGGAAATTTATATACGATGAGAATGTGAAAGCGAAAGAAAGCAGAATCCGGTAACTCTTTTTTTC CCAAAAATTCCTTTAAAAATCATTCTCCCAAATGTAGTGTTCTCCCAAATATTAATATTTTTTTT GCCAATGTTCGTGGTGCTTCTAGTCTTTCCAAACTGCATATGCTATTTGACTTCTTCCTGTCTTC TAATTTTGATTGTCTCTGCCTAACCGAAACGCATTTCAACAGTAG Found at i:118226 original size:7 final size:7 Alignment explanation
Indices: 118214--118227 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 118204 CTCTAGTCAA 118214 TCCAAAG 1 TCCAAAG 118221 TCCAAAG 1 TCCAAAG 118228 GTTTCTTTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14 Consensus pattern (7 bp): TCCAAAG Left flanking sequence: Indices 117714 -- 118213 GACCTCGGGCTTATCACCGACGATAAATTGTCATTCAAATCGCATATCAATAGAACCTCTTCCCT GACACTTCTTAGGGCAAAACAGATCCTAAAATCCTTCCCCTCTGGCTCCATTAAATTCTATGTGA ACCTGTTTAAAACGTATGTCTCACCAATTCTTGACTATGGGTCCCACATTTACTCCCCTCCCCCT CATTCAAAACTGTCAGGTGCATTAGAATCCGCTCTCAAATACTACTCAAGAATAATACTACAACG TAACAATATACAATACAAAGTATCGGAAACATCACATAGAAACACCTCATTAGTTTATTCACTTT CATATAAAAACCGCCTAAGCATTCTCAACATGGCCACAGCCCGCTCAACACGCTTAAAATCACAG CTTATTCTCTTGTATAAAATTATAACAAGCGCTGTACATTTCCCAGATGCAAAAAGATTTATTAT GCATGTCAGATCTCAACGTCGGCCGATGCTCCTTTCTCTAGTCAA Right flanking sequence: Indices 118228 -- 118727 GTTTCTTTTCTATTGTCGTTCCCCTCTGGAACAGTATAGTTCACAATGTAGCAACATTCCTTTCC CCCTCCCAGTTTATGAACCTCATAAACCAACAAATCTCATTCTTTTAAATTTCTCGTTGATTTAT CCTCTTCTGTCAAATAGTATTTAGTTTTTTCATACTTAAGATGGACTCTGACGGGTCTTTCTTAT TTTTATGTGTTATTCGATTCTTCCCCGTTGATCTTCTATGTACTACTTTTTGTTACTATTTATCT AATTTTCGAATAAACAAACAAACATCGAATTTTGTACCGGACCATACGATATAGGTTCTCACAGC GAACAACCATCGGACCACATGATGACATGGCTTGCAAAGTTGAGTTATAGTAACACGAGTTCGCG GTGTTAACTAATCTGAAATTTGAATTAACAAAAAAGACTAGCAAATCTGCGATTTGCCAAGCTTC GCAGTGGGGTGTGGCGTAGATTGTAAAAGTGCAAAATTTCTAGTG Found at i:120266 original size:7 final size:7 Alignment explanation
Indices: 120254--120268 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 120244 TGAATTTTTC 120254 TTGAAAT 1 TTGAAAT 120261 TTGAAAT 1 TTGAAAT 120268 T 1 T 120269 CATTGAATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47 Consensus pattern (7 bp): TTGAAAT Left flanking sequence: Indices 119754 -- 120253 TTTCAACAAACGATTTACAAAAATCTTTTTTTCAAAGAAACGGGCAAGCGAGAAAATAAGAAATG AAAATTTCGATTTTTGACAAAAAAAAAGGTTTTCAGGATTGTTGGTTGAGGCTCACAATTTTGGT TGAGGCTCTCTATTTTGGTTGAGGCTCACAGTTTTGGTTGAGGCTCAGGATTTTTGGTTGAGGCT CTCTATTATGGTTGAGGCTCTCTATTTTGGTTGAGGCTCTCTATTTTGGTTGAGGCTCTTTATTT TGGTTGAGGCTCTTTATTTTGGTTGAGGCTCACAGTTTTGGTTGAGGCTCTCTATTTTGGTTGAG GCTCTCTATTTTGGTTGAGGCGCTCGATTTTGGTTGAGGCTCTCAGAATTTTTGGGTGAGGATTG GATAAAAAATTGAAGCGATATTCAGAAAAAAAATTGGTTTTAATTTTTTTTAAATATAAGTTTTC AATGCTAAATTTCAAATTTGTCTTTTTTTTTTATTTGAATTTTTC Right flanking sequence: Indices 120269 -- 120768 CATTGAATTTTTTTTTAATACATACATTCAGAAACATTAAAATTCAGATATTTTTTAGATTTTTC AGCCAAAAAAACTCAAATTCAAATTTAATTTATTTTTACCTCTCACAAATTTTCAACGTCGGCAT TTCGACCTCCTTCTTCACGGAAACCTTCTCTCCACTCCGAATCAAGTCAAGAATCGCCCTCGGAT GAACTTTCTCAAGATCCCGAACATATTTCCTCGCATATCCTCGATAGGCATTCGGTGCGTAGATA CATTCCGTATAGAAATATTCCAATTGATTTGTTCTCGCATACATCACAATATCCCTTTCAAAACA GTATTTCAGAGGTTTGGCACGTGGCAAATCACCTTCCTCTCCGGTGACAATATTCGTGCACCGCT CCAGCCGAGCAATATCACCACGGAGCACATTCATGAGTAAGGTCTCTGCCATATCATCTGCATTA TGTCCTGTAACAAGTTTGGTGGCTCCGATTTTAAAGGCTCCTCGA Found at i:121259 original size:7 final size:7 Alignment explanation
Indices: 121247--121261 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 121237 TGAGGCTCTC 121247 TGGTTTT 1 TGGTTTT 121254 TGGTTTT 1 TGGTTTT 121261 T 1 T 121262 TTTTTAAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73 Consensus pattern (7 bp): TGGTTTT Left flanking sequence: Indices 120747 -- 121246 TCCGATTTTAAAGGCTCCTCGATCTAGAGCCTGTCTTCTGAATACTCCACAAAATGTGCAATTAT TCTTTTTCCCGATTTTCGCCACGATATCGTCCATAGTCCAACCGTACAGGTCACGATAGCTAAGA ATTGTCAGTGGGAGCCCATATTCTACACGATTCTTCTCCACGGCAAGCAGGGAATCGTCTCGATA GCCTTTGATGCCTTCGTCGATTGAGAGAAGCTGAAGATCGAGCCCGTAGTCGTGTCGGTCGTTGA GAGTTTTCATGACGTATGCCAGGACGGTGGAGTCTTTTCCGCCGGATGCTCCGATTGCAACACGT TCTCCTCGCTGGAATTTTATTGGAAGGGTGGCATCGAAATTTTATAAAAAAGATTATTATACTTT TTCAGGCAAAATCGAAAAATCGACAAAAAAATGTTCCGAAAAAGCCATAAAATTTTTGGTTGAGG CTAAGGATTTTTGGTTCAGGCTCAGGATTTTTGGTTGAGGCTCTC Right flanking sequence: Indices 121262 -- 121761 TTTTTAAATTTTTTTCGTTAAAACTTCTTGAACATTCACCCGAATTTCACAAGTTTTCTAAAAAG TTCTTTAAAAACTTATTCGCGGGAAAATTATTTAGATTTTATTGCTTTTTTGTTGATTTTCAACC GAAATGTCCAAGTTTTTTTTTTTGAAAATTTGATTTAAAAAAATCATTAATAGGTGAAAATATCA AATTTCCGACATTTTCACACAGATTTTCAGTTGGATTTTTTCCAATTTCATGATCTTTTCTATCA AATCCCAGTACCTTGAACAGTTTATTGTTCACAATCGCCTCGTGCACATCGTCCTCGAAATTCCT GCTGAAACAGGGTCCACACAGCTGTGCTCCGTCCTTGGCTTTTCGGATTTTCGCTGGATTGGAAC ATCCGGATCCGGATTGGCACGGTGGGGGTCCTCGGCGTTTTTCCATCTGAATTACTCTGAAAATT CATTATATTTTCTGAAAATTTGTTGAAAAAGAGGTATAAAAATAG Found at i:123291 original size:8 final size:8 Alignment explanation
Indices: 123278--123299 Score: 44 Period size: 8 Copynumber: 2.8 Consensus size: 8 123268 GAACGGATCG 123278 TCCTTTAA 1 TCCTTTAA 123286 TCCTTTAA 1 TCCTTTAA 123294 TCCTTT 1 TCCTTT 123300 TTTAAAGGCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.18, C:0.27, G:0.00, T:0.55 Consensus pattern (8 bp): TCCTTTAA Left flanking sequence: Indices 122778 -- 123277 TGAGGCTAAAAATTTTGGTTGAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTC TCGATGTTGGTTGAGGCTCGCGATGTTGGTTGAGGCTTTGATTTTGGTTGAGGCTCTCAGGAATT TTTGGGTGAGGCTCTCAGGATTTTGGTTGAGGCTCTCGTTTTGGGTGAGGCTCAGGATTTTGGTT GAGGCTCTAGATTTTCTTTTTTTTTTGCTCTAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGGG GGGGGGCAGATAGCTCAGTCGGTAGTGGTGGCCGCTAGCAGTCTGGAGGTCACGAGTTCAAGCCC GGCCTCACCCCCTAGGTTCACCCAGCCTCTATTGGGAAGTGGAGCAATCCACGACTGGATTATCG GCCACAGTCCCCGGCTAGGACGTGGCTTAAATTACAGCCCAGAGGGATCACCACCAGGCAGTGTA CCTGAATCCCAGATCCGCAGTGCATAGCACTTGAAGAACGGATCG Right flanking sequence: Indices 123300 -- 123799 TTTAAAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTAACAATTTTGGTTGAGG CTAAAAATTTTGGTTGAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTCTCGAT GTTGGTTGAGGCTCTCGATGTTGGTTGAGGCTTTAATTTTGGTTGAGGCTCTCAGGAATTTTTGG GTGAGGCTCTTAGGATTTTGGTTGAGGCTCTCGTTTTGGGTGAGGCTCAGGATTTTGGTTGAGGC TCTAGATTTTGGTTGAGGCTCACAATTTTGGGTGAGGCTCTCGATTTTCCGTTTAAATTCATTGT TTCATTCGTATTATTTATGAAAAAAAATTAAGATTTCGATTTTTCCAGATTTGAGTGAAATTTAC ATCATCCTAACCTTTGCGTAATTAGCAATCTCAACGGAACATCATCCTCATCTCGGAGCAGCTTA ACTGGCAGTCTTTCTGCTCCATAAACTCTATAGAATTTCACAGGA Found at i:124632 original size:8 final size:8 Alignment explanation
Indices: 124619--124634 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 124609 CGAAAAGCGT 124619 CCTCGTCG 1 CCTCGTCG 124627 CCTCGTCG 1 CCTCGTCG 124635 TCGTCCTGTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.50, G:0.25, T:0.25 Consensus pattern (8 bp): CCTCGTCG Left flanking sequence: Indices 124119 -- 124618 CAATGTTCTCTACGAAGCCGAACTCGCCGAAAGCTTTCTGAAGGATCTCCTTATCGCACCAGGAG CCGAGGCCACCGACGAAGAGCCGGCGGGAGACTTGGCTTTTACCGTAGCCGATCTTCATACGGGA ACCGCCTGCACGAATCGGGCGGTCTTGTTCTTCGGCTTTTGCTTGGATTGCTTGATCGACGGTCT GAAAGAATTTTTTAACTTATAAATGTTGAGTGAGGCTAAAAATTGGTAGAGGTTCAGGATTTTGA GTGAGGCTAAAAATTGGTTGAGGCTCAGGATTTTGAGTGAGGCTAGGGCGAGTTCTTGTTAAAAT TCTATGAAGCCGCGAAAAAAATTCGGTCACGAACCTGAAACATGACAAAAGCGTATGCGGCGTCC GTATTGATTGGCGTCTTTATATCGACTTCTTCCACTTTCCCGTGCTCCTCAAAAACGTGACGAAT CTCTCGTTCCTTCACATCCGACGGCATATTTCCGACGAAAAGCGT Right flanking sequence: Indices 124635 -- 125134 TCGTCCTGTTTTAGCCGCCACGTGGATGGTTCCTTAGTCGGGCGGCCCCGATTCCCGCTTCCACT TCCGCCTTCTCGTTTACTGTCGGCTCCGTGTTGAGCTCGATTAAATCGATCCGGAATGTATTTGC CCTCCTGATCACGTAGAATTCCAGCTGGATCACATTGAACACGCTTGCCGAGCACTGATTTTAGA CGGTCCATTAAGGTGTATCTGACCTTCCGAGCACAATCATTTCTCTCGAAATTCACGTAGGCTAG GCGTTCGTCTTCTTCCGGGTTTTTGACCACTTTTATCTGAAAAAATTGGTATAAAATTGCGGAAA TCTCAGGATTTTTTGGTTGAGGCTCAGGATTTTTTGGTTGAGGCTCTCTGGATTTTTGGTTGAGG CTTTCTGGATTTTTAGTTGAGGCTCTCTGGATTTTTGGTTGAGGCTCTCAGGATTTTTGGTTGAG GCTTTCTGGATTTTTGGGTGAGGCTCTCTGGATTTTTGGTTGAGG Found at i:126344 original size:7 final size:7 Alignment explanation
Indices: 126332--126346 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 126322 ATTGTTGACC 126332 GTACTCG 1 GTACTCG 126339 GTACTCG 1 GTACTCG 126346 G 1 G 126347 CGATGCACTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27 Consensus pattern (7 bp): GTACTCG Left flanking sequence: Indices 125832 -- 126331 CAATTTTTTCTTCAAAAAGCTCCTTACCGATAATAACTGGAAAGTCCGTTGCAATTCGGTCGGTA TTGAGGTCTACCGCGTTCTTCTGCCATTTTTCGCTGAAGAAATTCGAATTTAATTCGTTTTCGAG AAGAATCGGCATTTTTAGTTAAATTTCTTAGTGATTCAGGTGTAGAATGAAACGAATAAAAGAAG CAATAATAAGACACAGAAAAAGTAGAGAGTAAGCTAGAAATAAGATTGACTAAACACTGAGTTTT TGCTGAAAAAGCCGATTTTTCTCAAAATTACAGCTGGAATAGAACAGACAGTACAATAGAAATAG AGTTTTAATATGAATTTTAATATTAAAGAATCTGAAAATATATTTAAACACCAGAAATTTGTGTA AATCGATGAATTTGTAGAGCTCGTGAGCTAATCAATTATTTGCCAGCGATGTGTGCATTCTGACG TGACGGTGTACGTTCGCGGTGGTTGCGTACTTTAAATTGTTGACC Right flanking sequence: Indices 126347 -- 126846 CGATGCACTGCGCATTCTAGGAAATCGATTTTCTTCTATTTTTTGATTTTTAAATCGAAATTTCT AAAATAATTCATGGTTTTCTGTCAATTTCAGATTTAAAATTGACAATTTTCAATTAAAATATCAA ATTTCATTCTAAAAATCCACTAGAAACGAGGCTCCACGATTCCGGCGCTCTCTGTTTATTTTGCA CGTTTCCAAAGGGCGCTTCGAGCTTTTCCCAGTGTTTTATTGAATTTTATGTGTTCTCGTCCCAT TTTCTCAGTTAAATCATGCATTAAAATTATGAAACTGCATTGATTACCTCTTTTTTCCCGGAAAA ATCGTATTTCGTTAATTAAAAAAAGTCGATAAGGCTCAATTAAATAAATCTATTTTCAGGATGGT TGCCGCTTCTGCCACCCGTAACATGCTCCATCAATATGGCCGTCGCGCCATCGGCATCTCGTTGA TCGCCTCCGTCGGCGCCACCGCCGCCTTCTTCTTCGGATACGTTC Found at i:129167 original size:7 final size:7 Alignment explanation
Indices: 129155--129170 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 129145 ATGCATCACA 129155 AGTTACT 1 AGTTACT 129162 AGTTACT 1 AGTTACT 129169 AG 1 AG 129171 GTAACCTACT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38 Consensus pattern (7 bp): AGTTACT Left flanking sequence: Indices 128655 -- 129154 CACCGCAAAAGAGAACAGTACCCCAAAATCAGATATCCCGCCAAAACTACAAGAAAAAATTAACT GTGTCCACCACCACCACCACCTAATTGTCTCCCGCGAATCACTTTTCTCCCCCCCCCCCCCCCCA CCTCAACCTCCTCACCGCCCGCCCGGTGGCCTCCAAAACAGTCTGCGTCTCTTCGCTCTCCACTC TCTCGTCTCGTGCCACACACCACCCCGCCACGCTCTGAAAAAAAGTTATCGAACTGAAAATCGTC ATTTTTCTATTTCTTTTCATAATTTTTCTGCCCGCCGGGGTGGGGTTTCTGACAGTTTTCCACGT GGCGGCACAGCTCAACAATAATCGATTTTTCAGTTGTTTCAAAAAACTAATTTTTTTTTCCTTGG TTTCTCTAATTCTCTCATAGCTGGTAATCTCTCGTCAGGTGTCCTCACCTAACTATTAATTATCG ATTATCTTTTTATTCGAAATTTCAACAACAAAAAAATGCATCACA Right flanking sequence: Indices 129171 -- 129670 GTAACCTACTACTTATATTTTAGATTTTTTTCAAGTTTTTTTTTATTTTTTAGTTTGAAAAACGC TTTCTTTCAAAGTTTTCTCCCTTTGAAATTTGGTTTTTGGTCCGTGTCCGAGAAGAGAAAAAACT CGGCCACCAATTTTTTTTCGCGGCCACATATTTTTCTTACGGCTGTCCGAGGCTCTAAAAGTCAA TTTTCAAATAGATATAGACTAAAAAAATCAAAACTAGAGAAAACTCGGCCACCGATTTTTTTTCA GGCCATGTGGAATTTTACACCACTCCCTTTTTTCTGAGAAATCAAGAAAACTCGGCCACCGATTT TTTGCAATTTTTTTCGGTCACCATTCCCAAATTCGCAAAATTTTCAAACGAAAATCGGCTATAAA AATCCTTTAAAAATAATTTTGGCCTAAAAAAAGAAGGTAGAGAAAACTCGGCCACTGACTTTATT TCGCGGCCACGTTTGGCGATGACATTTTTCAAAGAAATTTCACAT Found at i:130279 original size:7 final size:7 Alignment explanation
Indices: 130267--130280 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 130257 TTCCTCGCTT 130267 CAAATGG 1 CAAATGG 130274 CAAATGG 1 CAAATGG 130281 GGTGACTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14 Consensus pattern (7 bp): CAAATGG Left flanking sequence: Indices 129767 -- 130266 AATCAAAAATAATTGGTGGCCGAGTTTTTGCTTTTGTCAAGAGGTCGTAAAATGGAAACCTGAGC CACCACTCTGTATTTTTTTTGTTTGAGAATTCCCTTCAGGTGCACTTCTACTTACATTAGTTTCA AAAAAAACCTGAAATAGAGAAAACTCGGCCACCGAATTTTTTGGTTGTCAAACTGTGGCCTAGTT CTGCTTTTGCCAAGAGGCCGTGAAATTGAAACTTAGGCCACCACACTTTAATTTTTTTTTCACAA AAACTGAGATAGAGAAAACTCGGCCACCGATTTTTTTTTCTCGGTCCCGTTTTTTGCCAAGCCCT CATTATTTTCAAAAAAAACACACACAAAATGGTGTATGGTTACTAAAAAAAAGAGGTCAGTGATC ATTAATCAGATATCAGTTTTTGGTTTTTTTTGCCATGTTTTCTCACATTTTTCGGTTGGCAGATT TTCGTGTTTTTTTCTTTCTTTTTTTGATAAATTTATTCCTCGCTT Right flanking sequence: Indices 130281 -- 130780 GGTGACTTGAACTGTGTGTACGTGCATGTGAGAGGGCAGAGACGCAGACAGTGAGGGCCCCTCGG AGCAACAGATGGAGAATTATGTCAAGTTCAGTTGTTTACACATTTTTTTGCAGAACCACTCCCTC TGTGTTCTCCATCTCTTTTTTTTCATTGTGAAAAGTGTGTGCTTCTCAGTATGAAATGAACTTTG TTCGAAAAATTTTAAAATTGTTAAATGACAAGGCTTCCACAATTAAATTTGCAATTTTTTGATAG TTTTAGTACCCACGAGAATACCGTATTTCTTCTATTAGTATGGCCTCCCTATTAGACTTGCACTC CCTATTAGTATTGCCCCTCGGAGACCTTCCTTTTCTGAATTTTTACATAAGATTCGAGCTTTTTC AGAAAAAAAAAACTAGTAAGCTGAAAGTCAGAAAAATGTTCTGAAAATTAGTATTGCACTCCCTA TTGGGCAAAAATAAAAAAAGTATTGCAAGCGGGAAGACTATCGAA Found at i:132753 original size:7 final size:7 Alignment explanation
Indices: 132743--132758 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 132733 TTGAAATTTG 132743 ATCCAAT 1 ATCCAAT 132750 ATCCAAT 1 ATCCAAT 132757 AT 1 AT 132759 AAGTGAAATC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31 Consensus pattern (7 bp): ATCCAAT Left flanking sequence: Indices 132243 -- 132742 TCACCGTCTGCGTCTCTGCTTGGCTCTTCTCTTTCTCTCCATGTGCTCCGGCTCCCCCTCCTCAC ACTCAACCACACACACACACACACGTATACATATCTTCTTATAGTTTTGTTGCATGCTTCATCTC TTTTCTCATCTTTTGCCTTCTATGTACTTTGCTTTTTTTCCAGATCTCCTGATGAACTAAACTCT TGGGAAATAAATTATGAGGATACGGCACGTGGTGTTCTGCCTGCTCGCACTGGTTTATGGTGAGT ACTTTGAGGTTTTGGTGTTTGATAGCAAAAGTCATCAATCTATTTTTCGGGTTAATTGGGTTAAT ATAGGTATTATTATGCAGCTAGATGATGATTTGGTTCTATCTAAACAAAAAAGTGCAATTAAAAT CGAATTCTCACTGGTTTACATAAATTTTTAGTTATAATCACAAATTTAATAGTTTACGCTCTATT TTTTTTTTTGACAAACTAGATATAGTTAAACATATTTGAAATTTG Right flanking sequence: Indices 132759 -- 133258 AAGTGAAATCAAGTTAAGGTTGTTAAGTTTGATATATGTAGTAGTAAATATATAGAAATGTTTTT CATATCAGGTTCAGCCAATCATATTCGAGTTGCGTAGTGCTTATGCAGTTGATAGGTTTTTTGGT ATAATCTAGTTATGTTGTAACTCTAAAAAAATTTTCTAATTATCATCACGAATATGTATATCGTT TAAGAAGTTAGAAAAAAACACTGATTATTTTTTTATTAGCTCAAAAAGTATGTATTAGTCCCATT TAGCTGGCTTTTAGAAATTCGTGTTTAATTTTGATTAGTTTGACTATGGAAATTGTTTGAGCCCA AAGTTAAGCAATTTATGTTATTGCAGATTAGCTGCAGACTTTTTCTATTAGAATAGAATCTTATT ACATAGTTATTATTGCCTAATTTCAGCTATACAAAATGCGACTTATCAACTTATCATTTTAGTTG TAGTTGATCGCAGTTGAAGAAAATTGAAATGTTATTATGATCTTA Found at i:133202 original size:8 final size:8 Alignment explanation
Indices: 133189--133204 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 133179 ACAAAATGCG 133189 ACTTATCA 1 ACTTATCA 133197 ACTTATCA 1 ACTTATCA 133205 TTTTAGTTGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38 Consensus pattern (8 bp): ACTTATCA Left flanking sequence: Indices 132689 -- 133188 CGCTCTATTTTTTTTTTTGACAAACTAGATATAGTTAAACATATTTGAAATTTGATCCAATATCC AATATAAGTGAAATCAAGTTAAGGTTGTTAAGTTTGATATATGTAGTAGTAAATATATAGAAATG TTTTTCATATCAGGTTCAGCCAATCATATTCGAGTTGCGTAGTGCTTATGCAGTTGATAGGTTTT TTGGTATAATCTAGTTATGTTGTAACTCTAAAAAAATTTTCTAATTATCATCACGAATATGTATA TCGTTTAAGAAGTTAGAAAAAAACACTGATTATTTTTTTATTAGCTCAAAAAGTATGTATTAGTC CCATTTAGCTGGCTTTTAGAAATTCGTGTTTAATTTTGATTAGTTTGACTATGGAAATTGTTTGA GCCCAAAGTTAAGCAATTTATGTTATTGCAGATTAGCTGCAGACTTTTTCTATTAGAATAGAATC TTATTACATAGTTATTATTGCCTAATTTCAGCTATACAAAATGCG Right flanking sequence: Indices 133205 -- 133704 TTTTAGTTGTAGTTGATCGCAGTTGAAGAAAATTGAAATGTTATTATGATCTTAAAAAAATACAT ATCACTTTAATTATGAGTGACTTGAAATTGCTATTTTTTATTGCAATTCATAGTTGATATATGTT CAAAAAAGTCAACAAGTTAACTGATTTGCTGATAGTGAATATTAAATTTAGCGCAATGAGCAATT GATGCAATTAAATGTTAGTTGCAGTTTTATTCTGTTAGTGGGTATTTAGAAAATAGCTAGGTGCA ATTTAAACTAAATTTTCAACAATTTAGGAATTTAAACTTTACTTTTTAGTCGCATCACTTATCTA GGCACCCCACTTTTTAACTTTAAAAGCGCCTAACAATAAGTATCTAAGTTGTCCTGTATTTTATT TTAAAATTGCCAATTTGTTAATTTTTTCTCTATATAATTAATTATCTATTGATATTTACAAAATG TGCCGAGTCCTGCCCTTCCAAAGGAAACTAGTGGGGTGCAATACC Found at i:134287 original size:8 final size:8 Alignment explanation
Indices: 134274--134289 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 134264 GATTTAACAA 134274 GATTTTCT 1 GATTTTCT 134282 GATTTTCT 1 GATTTTCT 134290 TGCAGTGACC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62 Consensus pattern (8 bp): GATTTTCT Left flanking sequence: Indices 133774 -- 134273 TTATCAGTATTTAGGCCTTGGCTCAAACACATCATAAATTGGTACCTGTGCAAGAAAATTAACCA AATACAGCTTTCTACGACCCTTTTCAATTTTTTCCAGGCGCCGAAACTTCCGACGATGATCTCGA CGAACGGACAAATATCTTCATCCGTGATAAACTGATTCCGGCGTTGAAGCTTGCAGAAGGTAGTT TGTTTTTTTGGACTCAACAGAAAATAATCGCCGGCACTCAAATTAGATGGCATTTATCGTCAGAA GAAGCTTTGGGCAAAATCCCCCGGTAGCAAAGCAAAATAATTTCGTTCGATCAAACATTAAAAGA GATTTTCAACTATATATATAATCAGTGATAAGCCTATAATCTTTAGTGTTTCCCCCGAAAGCACT AATCTATGGGAAATTTCCTTTTCGGGGGACGTGAGTTTATGCAGAAAAAAAAATTGAAGTTTAGT TTATTTTTGGAAGGATTTTTAATCTTGTGATAAGGGATTTAACAA Right flanking sequence: Indices 134290 -- 134789 TGCAGTGACCAAGGTGAATTTCACACGATTACACTTATGCCATTGCTCAAGGGAAGTTGGATGCA ACGCGAGGACTACCGGATGGGTGCCTGGAATCGAGTTCCTTAATGAGACGGATCGCAGTTTTTAT GAGGTTAGGCTTTAACCATGTGGTCGAGTTTTTCCTTGCCCGCAATAGATCCTTATTGACCAAAA CTACAGTAATCCTACAGTACCTCAACCATCTTCCTCTATTAGACCTGTCACCAAAGTATTTGACA AAGCAAAAAAACAAGAATAATTTAATTACTCGATAACTCCAAAAAACAACAAAAAATTGTATTTT GGTTTTTTAAATTTCTTTATCTGATTGTGAATATTTTCGTTTTCCCCGCGATTTCTTTAAAAGAT CAAAAGACTAAGACTAAGATAATCTTACAGTACCCCGACCCTATCCCTCCACTAACCTTAATCTC TTCAAAAAACAATGAGCATGTTTTCTCCTAAGCTACAGTAATCCT Found at i:134989 original size:7 final size:7 Alignment explanation
Indices: 134977--134990 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 134967 TTAATCTCTT 134977 CAAAAAA 1 CAAAAAA 134984 CAAAAAA 1 CAAAAAA 134991 AACATGTTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00 Consensus pattern (7 bp): CAAAAAA Left flanking sequence: Indices 134477 -- 134976 GACCAAAACTACAGTAATCCTACAGTACCTCAACCATCTTCCTCTATTAGACCTGTCACCAAAGT ATTTGACAAAGCAAAAAAACAAGAATAATTTAATTACTCGATAACTCCAAAAAACAACAAAAAAT TGTATTTTGGTTTTTTAAATTTCTTTATCTGATTGTGAATATTTTCGTTTTCCCCGCGATTTCTT TAAAAGATCAAAAGACTAAGACTAAGATAATCTTACAGTACCCCGACCCTATCCCTCCACTAACC TTAATCTCTTCAAAAAACAATGAGCATGTTTTCTCCTAAGCTACAGTAATCCTACAGTACCCCTA CAGTACCCCAGTACTACTACAGTACCCCGACCCTATCCCTCTACTAATCTTAATCTCTTCAAAAA ACAATGAACATGTTTTCTTCTAAGCTACAGTACTCCTACAGTACCCATACAGTACCCTTACAACA CTACTACAGTACCCGACCCTATCCCTCTACTAACCTTAATCTCTT Right flanking sequence: Indices 134991 -- 135490 AACATGTTTCTCCTATACTACAGTACTCTTACAGTACCCCAGAGGTGTCCTTATAAGTTTGACTA GTTTTTGTCATTTGGCAGTAAAACTACGGTTCTTCTAAAATTTCGGTTACTTGGTTACTAGGTCT CAATTCTCACACTAGACCAATCCTCTCTTTCCAGAACACGTGCTACACGGACGGAAGCTGCTACC AGAGCGCTCGGCCGTCACCCGAAATCTCACATTTCGGATGCATGGACGAGAAATCTGTGACCGAC GAGACCGAGTTTCACGATACGGCAGCGAAAGTGTGCACGAACAACACGAAAGACCCGCACGCTAC CGTCTGGATTTGCTGTGATAAGGGAAATTTTTGTGCGAACGAGACGATCATCCACTTGGTAAGTG TGATCTCTTTTTTGACATCCGGATTTTGAATTTTCAAATTTTCAGGCGCCAGGCCCGCAGCAGTC ATCCACGTGGCTGATTCTTACTATCCTCGCCCTGCTCACGTTCAT Found at i:135422 original size:8 final size:8 Alignment explanation
Indices: 135409--135424 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 135399 CCGGATTTTG 135409 AATTTTCA 1 AATTTTCA 135417 AATTTTCA 1 AATTTTCA 135425 GGCGCCAGGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (8 bp): AATTTTCA Left flanking sequence: Indices 134909 -- 135408 ACCCATACAGTACCCTTACAACACTACTACAGTACCCGACCCTATCCCTCTACTAACCTTAATCT CTTCAAAAAACAAAAAAAACATGTTTCTCCTATACTACAGTACTCTTACAGTACCCCAGAGGTGT CCTTATAAGTTTGACTAGTTTTTGTCATTTGGCAGTAAAACTACGGTTCTTCTAAAATTTCGGTT ACTTGGTTACTAGGTCTCAATTCTCACACTAGACCAATCCTCTCTTTCCAGAACACGTGCTACAC GGACGGAAGCTGCTACCAGAGCGCTCGGCCGTCACCCGAAATCTCACATTTCGGATGCATGGACG AGAAATCTGTGACCGACGAGACCGAGTTTCACGATACGGCAGCGAAAGTGTGCACGAACAACACG AAAGACCCGCACGCTACCGTCTGGATTTGCTGTGATAAGGGAAATTTTTGTGCGAACGAGACGAT CATCCACTTGGTAAGTGTGATCTCTTTTTTGACATCCGGATTTTG Right flanking sequence: Indices 135425 -- 135924 GGCGCCAGGCCCGCAGCAGTCATCCACGTGGCTGATTCTTACTATCCTCGCCCTGCTCACGTTCA TCGTGCTCCTGGGCATTGCAATTTTCCTCACCAGAAAATCATGGGAGGCGAAATTCGACTGGTAT ATAAGATTCAAGCCAAAACCTGGAGATCCTCTACGCGAGACGGAGAACAATGTACCGATGGTTAC AATGGGCGACGGTGCTGGAAGTTCTGTGCCAGAAGTTGCTCCAATCGAGCAGCAGGGAAGCACAA TGAGCACATCTGCAGGGAACTCGTTCCCTCCTGGAATCATGCCTAATAACATGAAGGATATGCTT GATGTACTCGAGGAGACAAGTGGATCTGGTATGGGTCCAACTACACTTCACAAACTCACGATTGG TGGACAGATCAGGTTAACTGGTAGAGTTGGATCCGGAAGATTTGGTAACGTGTCACGTGGAGACT ACCGAGGTGAAGCGGTCGCTGTGAAGGTTTTCAATGCGCTCGACG Found at i:137675 original size:9 final size:9 Alignment explanation
Indices: 137661--137678 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 137651 AATATATCAA 137661 AATTATTAT 1 AATTATTAT 137670 AATTATTAT 1 AATTATTAT 137679 GTTCTATATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (9 bp): AATTATTAT Left flanking sequence: Indices 137161 -- 137660 AAGACGAGTCACCGGCAAATGGTGCTCCGCGGATAGTTCAGAAGGAGATTGATCGAGAAGATGAG CAGGAAAATTGGCGGGGTAAGAATTTTGATCAGGCTCCTATTGTGGACCGAGCTACTAAGCCCGG ACCAAAAAAAAACCAACATTTTGGGTATCATGTCTATCTGGTGCCTTAAATACCCTACGAATTTA GAAACTTTTCTCAAAAGCTTCCAACTAAACAAATTATCTTTAACCTTGAAGGTCAGATCTACCTA CTACCTAATACTATAGTAGCGGACACTTAATAAGTCCAGGTCCCTAACCTAGCATAGTTTATATG CCCGCCACCGTAGAATTTTGCGCCTTTAAAGTGAAGAACACTTTTCAACATAAATTAATTTTTTT CAGAAACTGCAAAAACTCCCAATGGACACATTTCCAGTAATGACGACTCGTCACGCCCACTTCTT GGTTAGAGCCCATTTTATCTTCGTTCTTAGGCGCCAATATATCAA Right flanking sequence: Indices 137679 -- 138178 GTTCTATATACTACACTTATCACCTCTCGTGACTTCCTCCCACCCCCATATCGATGATCTCATTT CTCTTCCTCAACCACTAACTGTCTGCTACCTATTTCTTGTTTATTAGCGGGTGCATTATGCAGCT AATTGTCCGGCGCCCCATCATTCTAAAAGAGACTCCTCACCGTGTACCTCAGAAAAACATAAAAA TCTTGTGATAGGTATGTACTGCATAAGCTTTATTACCCTCCCCCGAAACTTTGTAGTTTGTAGTT TACCCTGTTTTTTTTCTGTACCATGATTTCAAGTGTTTTTGAAATTTTATTTTGTTTTTATTGTT ATTATTATTACTATTTTCAAAAAAGGAGAAAACACATTTCAATGCAAAAACTGAAAATGAAAATA AAAAATTTGATTTTAAGACATGATAATTATACAAATATCAAAGACGGGCGGAACAAGGGATTGGT GGGAAATTTGAATCTTTCATAAAAACTCAAATTAGTGGGCTTTAA Found at i:137935 original size:7 final size:7 Alignment explanation
Indices: 137923--137939 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 137913 CCCCCGAAAC 137923 TTTGTAG 1 TTTGTAG 137930 TTTGTAG 1 TTTGTAG 137937 TTT 1 TTT 137940 ACCCTGTTTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.12, C:0.00, G:0.24, T:0.65 Consensus pattern (7 bp): TTTGTAG Left flanking sequence: Indices 137423 -- 137922 ACCTAATACTATAGTAGCGGACACTTAATAAGTCCAGGTCCCTAACCTAGCATAGTTTATATGCC CGCCACCGTAGAATTTTGCGCCTTTAAAGTGAAGAACACTTTTCAACATAAATTAATTTTTTTCA GAAACTGCAAAAACTCCCAATGGACACATTTCCAGTAATGACGACTCGTCACGCCCACTTCTTGG TTAGAGCCCATTTTATCTTCGTTCTTAGGCGCCAATATATCAAAATTATTATAATTATTATGTTC TATATACTACACTTATCACCTCTCGTGACTTCCTCCCACCCCCATATCGATGATCTCATTTCTCT TCCTCAACCACTAACTGTCTGCTACCTATTTCTTGTTTATTAGCGGGTGCATTATGCAGCTAATT GTCCGGCGCCCCATCATTCTAAAAGAGACTCCTCACCGTGTACCTCAGAAAAACATAAAAATCTT GTGATAGGTATGTACTGCATAAGCTTTATTACCCTCCCCCGAAAC Right flanking sequence: Indices 137940 -- 138439 ACCCTGTTTTTTTTCTGTACCATGATTTCAAGTGTTTTTGAAATTTTATTTTGTTTTTATTGTTA TTATTATTACTATTTTCAAAAAAGGAGAAAACACATTTCAATGCAAAAACTGAAAATGAAAATAA AAAATTTGATTTTAAGACATGATAATTATACAAATATCAAAGACGGGCGGAACAAGGGATTGGTG GGAAATTTGAATCTTTCATAAAAACTCAAATTAGTGGGCTTTAAATTGGGTGGAGCTTTAGAAAT TGCCACAAAAGGGGCGGAGCTCTACGCTCCGCCCACAAAATGGATGGACTGCAATTTCGCCTCAA ATTTTACGAAAATTCAAAAAAAAAATTTTAAGCGCCGCGCACAATATGGTTTTAATTTTTGAAAA AAAATGAAAATTGTATATTTTTGACCTATCCTTACCCGCCGTCTCTAATAATTAGTTTTTGTAGA AATACGGAAAAAGTGCACCAGGATTGTGAGCTTGGTTACGGAGAA Found at i:139719 original size:8 final size:7 Alignment explanation
Indices: 139701--139718 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 139691 AATTAAAATG 139701 AAAAGAA 1 AAAAGAA 139708 AAAAGAA 1 AAAAGAA 139715 AAAA 1 AAAA 139719 ACCAAACCTA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00 Consensus pattern (7 bp): AAAAGAA Left flanking sequence: Indices 139201 -- 139700 GCACTTCAATTTAAGAATTTTGCCTCCAAACTTACCCGTAATTTATTCGAACATTGCTCTGAAAT ATTTCGGGAATTTCAAAAAATTTTCTGACTCCAAAACTCAGAAAACCGGTAACTTTACTCTCAAC TTACATCCATAGGTTTCCAAGAACAATAAGGCAGAGGTAACCCATCTGGCCCAGTAGGACATGGT GCATCGAGTCCAGGTATTCCCTGATCTCCCTTCTCTCCAGCTGGACCAGGCCTTCCGTCGATTCC TGGCTCCCCATCGTTGCCGGGCGGACCTTGTGGACCCTGAAATTGGTATTTTATTAGGGTTTTTT ACGAAATTTTTTGAAAGAGTCGCACCATAGGCCCCGGATATCCTTTCGATCCTTCGGGCCCTTGT TTTCCCTGTAACTCATTGCGGTTAGGCTTTCATGAATCACCAAACACCACACTACACAAAGAAAA TTGAAAAGGACCAGGATGCCACTACACCGAGTTTGAATTAAAATG Right flanking sequence: Indices 139719 -- 140218 ACCAAACCTACCGTTTCTCCCTCTGTGCCGTGAGGGCCTCGAAGACCCATCGGGCCTGGTGGACC TGGGAGACCCAGGGATCCAGGCTGGCCTGGAAGCCCTGGAGGTCCAAGATCACCCTTTTCTCCAG GCGGTCCTGGAAGGCCAGGTGGACCCCGTGGGCCTGACTGACTGCCGCTGATCTCTCCGGCGCCC TGGAATAGGTTCAGGTTTACTGTATGGGTAGTGAACTTACAGGTTGCCCTGGCAATCCGGGCGGT CCGATGTCTCCTCGATCTCCGCGCTCTCCGGAATGTCCTGGAAGACCCTGAGGTCCACGTTCTCC TGACGGCCCTACTGGTCCGTGATGTCCCTGTAATTTTGCGGTTGAAAACGATTATTCTGGTAAGT TACATAAGTGTCAAGCTTCTAAAAAACACCTACCCTAGGTCCCGGTGGTCCTGGTGGTCCTGGAA TCACATTCTTGCCACGTAGCTCGGAGATGTCCTCAATAAGCAGCG Found at i:141624 original size:8 final size:8 Alignment explanation
Indices: 141611--141636 Score: 52 Period size: 8 Copynumber: 3.2 Consensus size: 8 141601 AAAATAAAAA 141611 TTTATCAT 1 TTTATCAT 141619 TTTATCAT 1 TTTATCAT 141627 TTTATCAT 1 TTTATCAT 141635 TT 1 TT 141637 GACAATTTTT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 18 1.00 ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65 Consensus pattern (8 bp): TTTATCAT Left flanking sequence: Indices 141111 -- 141610 CCATCTCTTCCAGGGCTCCCTGTCTCTCCCTTCGGTCCGATCTTCGACTCCCCGTCGAAGCCAGG CAACCCACGATCTCCCTTCAAGCCATGTCTTCCGTCTCTTCCAGCTGGTCCAGGGGGTCCAGGCG GTCCTGGAGGACCGGGCAACACATTACCCATATTTGTGTGGTGACTCATTGGGCCGGGTCCTGCG TGGGGTCCTACGTATGGTCCGGTCATGACACCACGGTCACCCTTGGGTCCTGGGAAGCCTGGGGG TCCCAGAGGTCCGCGTTCTCCTCGGTCTCCTTTTGATCCTGGGGTTCCCTGAACAATTTTAGTTG AGAAAAAAAAAATTTTTGTGAGGTTAAAATTGTGCCGCATGCATGTTTCGTTTTCAGATTGGTAC GGTTAGGAAGTATCCAAATTAGGCAAGGCAACTGACACTCTAACTTAAAATTATTATATCTCTAC GCAGAGACAAACTATCAAAAATTGTCAAAATATGTAAAATAAAAA Right flanking sequence: Indices 141637 -- 142136 GACAATTTTTGACAATTCTGAGTTTTTCGAGTGAACAAAAAATACACCACACGGAAATTTCATAA AAAATAAGCATACCGGCAGTCCGCGTGGACCATCCAAGCCAATTGGACCCTGAATTAGTTGCAAT GATAAGGTGGTAGGGGGATATTGAGAAATTTGTAGGGATGGTGCTGGTGAGGAGGTGATGGTGCG GGAGGTTTTGGGGTTCAAGCTAAGAGTTTATGCTTTTTAGGCCTATAAACTTACTATTAGAGTCG TAGTGGGTTTCTTAGGATCTCAGGAATAAGACTTAAGGCTTAGAGCTTCTGGCTTGAAATTGAAT CTAGAATTTGGCTTATGCTCATTTTTAGCAGAGGCTGAGGACCTTCGGCTGAAACCTTGGGTTAA AAGGGCTAAACTTAATAATTAGGGTCAGATTTAGGGTTTAGAAACTTAAGCTCACACTTATACCT TATGCGCTTTACGCTTAGGCCTAGACTGGACGCTAGGATTTAGCT Found at i:141649 original size:10 final size:10 Alignment explanation
Indices: 141634--141653 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 141624 CATTTTATCA 141634 TTTGACAATT 1 TTTGACAATT 141644 TTTGACAATT 1 TTTGACAATT 141654 CTGAGTTTTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50 Consensus pattern (10 bp): TTTGACAATT Left flanking sequence: Indices 141134 -- 141633 CTCTCCCTTCGGTCCGATCTTCGACTCCCCGTCGAAGCCAGGCAACCCACGATCTCCCTTCAAGC CATGTCTTCCGTCTCTTCCAGCTGGTCCAGGGGGTCCAGGCGGTCCTGGAGGACCGGGCAACACA TTACCCATATTTGTGTGGTGACTCATTGGGCCGGGTCCTGCGTGGGGTCCTACGTATGGTCCGGT CATGACACCACGGTCACCCTTGGGTCCTGGGAAGCCTGGGGGTCCCAGAGGTCCGCGTTCTCCTC GGTCTCCTTTTGATCCTGGGGTTCCCTGAACAATTTTAGTTGAGAAAAAAAAAATTTTTGTGAGG TTAAAATTGTGCCGCATGCATGTTTCGTTTTCAGATTGGTACGGTTAGGAAGTATCCAAATTAGG CAAGGCAACTGACACTCTAACTTAAAATTATTATATCTCTACGCAGAGACAAACTATCAAAAATT GTCAAAATATGTAAAATAAAAATTTATCATTTTATCATTTTATCA Right flanking sequence: Indices 141654 -- 142153 CTGAGTTTTTCGAGTGAACAAAAAATACACCACACGGAAATTTCATAAAAAATAAGCATACCGGC AGTCCGCGTGGACCATCCAAGCCAATTGGACCCTGAATTAGTTGCAATGATAAGGTGGTAGGGGG ATATTGAGAAATTTGTAGGGATGGTGCTGGTGAGGAGGTGATGGTGCGGGAGGTTTTGGGGTTCA AGCTAAGAGTTTATGCTTTTTAGGCCTATAAACTTACTATTAGAGTCGTAGTGGGTTTCTTAGGA TCTCAGGAATAAGACTTAAGGCTTAGAGCTTCTGGCTTGAAATTGAATCTAGAATTTGGCTTATG CTCATTTTTAGCAGAGGCTGAGGACCTTCGGCTGAAACCTTGGGTTAAAAGGGCTAAACTTAATA ATTAGGGTCAGATTTAGGGTTTAGAAACTTAAGCTCACACTTATACCTTATGCGCTTTACGCTTA GGCCTAGACTGGACGCTAGGATTTAGCTTAAACTTATGGCATAAA Found at