TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_X Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17718850 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10078299 original size:9 final size:9 Alignment explanation
Indices: 10078287--10078310 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 10078277 CCCAGGAAAG 10078287 GCCGGACCA 1 GCCGGACCA 10078296 GCCGGACCA 1 GCCGGACCA 10078305 GCCGGA 1 GCCGGA 10078311 GGACCAGGAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.21, C:0.42, G:0.38, T:0.00 Consensus pattern (9 bp): GCCGGACCA Left flanking sequence: Indices 10077787 -- 10078286 TCTGTCTTCCGCCAAAAGCGTCAAACCTTCTCCGGACTTCCAGCTTGGTGCCAATGCGAGCCAAC TAAGCCTACTTGCCCACCAGGACCACCAGGACCACCAGGACCAGCTGGACAACCAGGTAAGAACC GTTACTTCATTAATACGTAACTTCATTGTAATTATTTTCAGGAACCCCAGGAGCCCCAGGACCAA AGGGACAAGACAGCACCACAACCTTTGCTCCAATCAACTGCCCAACTGCCCCATCCGACTGCATC AAGTGTGCTCCAGGACCAGCCGGACCTGCTGGATCAGCTGGACCAGCAGGACCAAAGGGACCAGA TGGACGCCCAGGACAGCCAGGATCTGCTGGACACCCAGGAGCTCCAGGACAACCAGGATCCAAGG GAAACAATGGAGCTCCAGGAGCCGCCGGAGGGCCAGGACAGCCAGGACGTCCAGGAAAGGACGGA CAACGCGGAAAGGGATCCGCTGGAGCTCCAGGAGCCCCAGGAAAG Right flanking sequence: Indices 10078311 -- 10078810 GGACCAGGAAACAACGGATCCGCTGGAACTCCAGGACCAGCTGGACCAGCTGGAAACCCAGGAAC CCCAGGAAACAAGGGATCCGATGGACACCCAGGAACTCCAGGAGCCCCAGGAGGACCAGGACACG ATGCCGCCTATTGTGCCTGTCCACCAAGATCTGCTGTCTTCGTGGCCCGTCGTCATTAAATTTTA CTTTTTCAATAAACTCATCAGCATGCATACAATCTTTGTTTTTGTTCCTGAATAACATTCAACAA GAAATTTAATTGTTTTTTGTCAGTCTACTAAATTGCACTGGACTTTAAATTCTTATTGTTTTCTA TACTTATGATTTCAAGTGAAAGATTTGCTTTACCAGTCTTCAAATAATCAAGAGCGCCTGCTTAC AGACTGAAAACATAATATTTCTGTTGGAAACATACAACTTGTCATAGATATTGAAATAGATTTCC CTCCACACAGACCGAGCAGGTCAATTCTCACTCTTTTGTATCTAT Found at i:10078358 original size:9 final size:9 Alignment explanation
Indices: 10078344--10078364 Score: 42 Period size: 9 Copynumber: 2.3 Consensus size: 9 10078334 TGGAACTCCA 10078344 GGACCAGCT 1 GGACCAGCT 10078353 GGACCAGCT 1 GGACCAGCT 10078362 GGA 1 GGA 10078365 AACCCAGGAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.24, C:0.29, G:0.38, T:0.10 Consensus pattern (9 bp): GGACCAGCT Left flanking sequence: Indices 10077844 -- 10078343 GAGCCAACTAAGCCTACTTGCCCACCAGGACCACCAGGACCACCAGGACCAGCTGGACAACCAGG TAAGAACCGTTACTTCATTAATACGTAACTTCATTGTAATTATTTTCAGGAACCCCAGGAGCCCC AGGACCAAAGGGACAAGACAGCACCACAACCTTTGCTCCAATCAACTGCCCAACTGCCCCATCCG ACTGCATCAAGTGTGCTCCAGGACCAGCCGGACCTGCTGGATCAGCTGGACCAGCAGGACCAAAG GGACCAGATGGACGCCCAGGACAGCCAGGATCTGCTGGACACCCAGGAGCTCCAGGACAACCAGG ATCCAAGGGAAACAATGGAGCTCCAGGAGCCGCCGGAGGGCCAGGACAGCCAGGACGTCCAGGAA AGGACGGACAACGCGGAAAGGGATCCGCTGGAGCTCCAGGAGCCCCAGGAAAGGCCGGACCAGCC GGACCAGCCGGAGGACCAGGAAACAACGGATCCGCTGGAACTCCA Right flanking sequence: Indices 10078365 -- 10078864 AACCCAGGAACCCCAGGAAACAAGGGATCCGATGGACACCCAGGAACTCCAGGAGCCCCAGGAGG ACCAGGACACGATGCCGCCTATTGTGCCTGTCCACCAAGATCTGCTGTCTTCGTGGCCCGTCGTC ATTAAATTTTACTTTTTCAATAAACTCATCAGCATGCATACAATCTTTGTTTTTGTTCCTGAATA ACATTCAACAAGAAATTTAATTGTTTTTTGTCAGTCTACTAAATTGCACTGGACTTTAAATTCTT ATTGTTTTCTATACTTATGATTTCAAGTGAAAGATTTGCTTTACCAGTCTTCAAATAATCAAGAG CGCCTGCTTACAGACTGAAAACATAATATTTCTGTTGGAAACATACAACTTGTCATAGATATTGA AATAGATTTCCCTCCACACAGACCGAGCAGGTCAATTCTCACTCTTTTGTATCTATCTTTTTTCA AAACAGTGTGTAAAGTGGAACAGAAAAAAAAGCTAGCGAAAATAT Found at i:10081934 original size:7 final size:7 Alignment explanation
Indices: 10081922--10081935 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10081912 GCTCAATGAG 10081922 AAAGAAA 1 AAAGAAA 10081929 AAAGAAA 1 AAAGAAA 10081936 GGATAAGAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (7 bp): AAAGAAA Left flanking sequence: Indices 10081422 -- 10081921 TGATATATCGTTAGTTGTGTATTTTTGAGAAGGCCATAACATTTTCTTCTACTGAAATAAATCGT ATAAACTGATATTGTTTCAACGTTGAATACTTCTTTTCCGTGACCTTTTAAGCATCAATAACAAA TGCAAAAGTTGATTGTGACGTATTTCAGAGGAATTTCCAACTTCGGGAAATAACCGAGATCATTT CGAAACTATAAAACCAATTTGGGTGTTTGTGATTATTGATTTTTCATATCCTTAGTGTGATACTT CTGATATTTGTGACGGTATTTTTTTTCAATTTAAAAACACATTTTTCCTCACCTTTTTCGATAAA ACATGTTTTAATTCAAAAAAATCTCCGAAAGAAAATACAAAAATGCAGTAAAATAAAACTTAAAC TGCAGAACCAAAAGTCGTCAGGATTAAAAACAAAGAAGAACATTCGGTTAACCTCTTTCTCTGTG CCGTGTCATTTTGGCAGTTCATCTATTCACCAATTGCTCAATGAG Right flanking sequence: Indices 10081936 -- 10082435 GGATAAGAGTATTCTGCAAAGTGTTATTTTTAATGTTTTCTCTCTTCGGTCCAATAAGCCGCGCA TAGAGGACTCTAAACGACGGATATAACCTAGCACTTTGATTTAGAATCGAGCATTTGTTAATTGA ATCTCTATTTATGTTTCCGTCAACATTCAGAGTTTTGCAATAGTTCAGTATTTATGACGCACCGT ATTTTTATATCAGTCGTGTACATCAATTGGTCTTGCACTCACTTTTTTGTTTCACTAATTTCAAG ATACAAATTCAAGTTTGCTAATTTGCAATCTTTTTTTTTTCGTTTTTAAATTTTTTTTTGAGTTA TTAAGTCTTTTTGTAGCAATAACATTTATTTTTATAGACTTTGTTTGACATTAAAGACCGTGTAG TCAAAGTTTGTAATTTTAGACATTTAATAACTGTCGGAAACTTGGTATTGCATGTATGTATATAC TTTATATACTGTCGAATGAGCCGTTTGTCCAATTACTCAGCCTTT Found at i:10087224 original size:7 final size:7 Alignment explanation
Indices: 10087212--10087232 Score: 42 Period size: 7 Copynumber: 3.0 Consensus size: 7 10087202 GATTTCTAAT 10087212 GTTTCTA 1 GTTTCTA 10087219 GTTTCTA 1 GTTTCTA 10087226 GTTTCTA 1 GTTTCTA 10087233 CAACTTTGTG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): GTTTCTA Left flanking sequence: Indices 10086712 -- 10087211 TCCGCTGACGTTTGCTAATGCACATGATTTTTTGGATAAGTGTGAAACGGAATCCCATATATTTT ATAGTTTTAATATATGAAGCGCCAGTTTGACATTTGAAACACGACACCTAATCCATTTCGTTTAC AGCGCTTCTTGCCTTTTCGGATGGAAGATACATTGGCGCCATTCTTGACCGCAACGGACTTCGAC CTGCCAGATACTACTTGACGGATGATGATCATCTATATTTGAGTTCGGAAGTTGGCGTCAACGAC ATTCCAATTGAGAAAGTTGTCAAAAAGGTATGAGAAGCAAATATATTGACGCGTCTAGCATTGAA ACGTGTGAAGGGCAGCGCTTTTTTTTTTGCTCAGAGCGATGAAATATGGATGAATAGGAAGTCGA TGCTTGTGAGCATCGCTCGAGCGAACAGGGTTGTGGTACCGAGCAGATTGGAAGAGGGGACGAGA ATTGAATTATTCTTCTATTGGAGGGTGTGACGTTTGATTTCTAAT Right flanking sequence: Indices 10087233 -- 10087732 CAACTTTGTGTGCATATTTTCTCATGTTATTTTGGTTTTCAATCAAATCACAACAGGAGTTTTAT CCAGCACAACTTTGGGGGCATTACAGTCTCATATGAAATAAAAATAGAAATATAATTTGTTTGAG GTGTAGAAGGGGCTTTTTTGGAGATGACGTTCTTTGGATATTGAAAACAATTAAAGCGATTGAGA AGAAAGGATGAAAGGAGTTGGAGAGGAATTTGAACAAAAAGTGTTGTCTCTTGATCGGGCGGTAG TTTCGACGTCTACATGAAGAAGATGTTCATAATGGTTCATGATCACATTGATGATGATGTTTGTG CTGGATGTTTAGAAACGGTCATCACCACCGATAACACTGAAATTTTGAAGTTAGCAAAAATAACT GTTTAGATTAAGTAAACGCACTCGTCAACGTCGATGTACTCAGCGATTGCTGGAGCCCCGGCCGG AACGAAGCGGTAACCCAAGTGTCCTTCACTGTTCCCTCCGCGCTT Found at i:10090968 original size:7 final size:7 Alignment explanation
Indices: 10090956--10090973 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 10090946 TGTTGTTTTT 10090956 TTTCCGA 1 TTTCCGA 10090963 TTTCCGA 1 TTTCCGA 10090970 TTTC 1 TTTC 10090974 GAAATGAACA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.11, C:0.28, G:0.11, T:0.50 Consensus pattern (7 bp): TTTCCGA Left flanking sequence: Indices 10090456 -- 10090955 TGCTGTGTGTCCTGGATTCAGAGATTCGGTATTAGGAAATTGGGGGTATTGTTGTTCGCTCATTC GAAAAAACAAAATTCAAAAAAGGAAAGATTAGGCGGTTTACAATTTATGGTCGGCTTTGAAATGA AAATGATACGGCATTTTCGTGTCTTTCAAGTAGAAGGTGACTTGGTGTTGCACAGCTGGAGGGTG GAGGATGAGTAATAGGAAATGAGTGGTAAATTTTGAAGAACGCAGTACCAAAATCATGCTTATAA TGAAAATCTCTGCTAAATAGAAACCAAGACTCGAATGTTTCAATAGAAAAAATTAGAGTAGCGCA TAAATAGGGTATTTAATATTAATTTCACTCTGTTCAAATGATGAATTATTTTGCACTAAAAATCT CGGTGAACCAATCTCAGCTTACAATTTTAAAATTTAATTTCATACGCATTGCGTAAATAGTAAAT AATAAATGCTTGTAGAGTATGATTATTAAAATTGGTGTTGTTTTT Right flanking sequence: Indices 10090974 -- 10091473 GAAATGAACAGTATGCTTTTTTAATACAAAAGTAAACGTTGTGTTTGCACACTTGAGTGCTTTTT GAATTTCAATTTCAACGTCATTTTGGATTGTGATTTCGCAAAAGCGCATATAGCACATAGGCGTT AAGAGGTCATCTGGGCATGATGATGAGTGCTTGAGAACCGTTCAGATATTCTATTCGGGGGCCAT TCGACGTTTTCAATGATGTCAATAACATTGAAACGCTTGAAATTTTAAAATCTAAAAATCATGAA AACTTTTTGTAGCGTATGTGAACTTTTCAAAGGATCACTTGGTCTAGACTTCAATAAATCAAAGC TTTTGGTTTACATGACGTTGTATAATGTCCTTAATACAATTCTGATAATGGTTTGGTATTTAACA CTTTTCTTGGTCTGCATTTTATAACTCCATTTTTAATATACAAAAAATGAAGCAACAGATAACAT TGTGAACTAGTAACGATGACTGTTCAGAATAAGAACAAAACGAAT Found at i:10100027 original size:7 final size:7 Alignment explanation
Indices: 10100015--10100030 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10100005 AGGATTGCCA 10100015 TGGGAGT 1 TGGGAGT 10100022 TGGGAGT 1 TGGGAGT 10100029 TG 1 TG 10100031 CTGAGACACA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.56, T:0.31 Consensus pattern (7 bp): TGGGAGT Left flanking sequence: Indices 10099515 -- 10100014 ACTTGGCTAACGCCGACGAGCTTCAGATTAAAATGGCTCAAGGTGCAAAACCAGGAGAGGGAGGA GAACTTCCAGGGCACAAGGTTACTCAAGATATTGCTGACACGAGAAAGTCTACAGCCGGAGTTGG TCTCATTTCGCCACCACCTCATCATGATATTTACAGTATTGAGGATCTTGCTCAGGTTGGTGACA AAATGTTAAACTGTTATTCGGAAATATTGGTATAAATTTGTATCAATATTTTTTAGGAAATCGTC CGTTTTTTTAGTATTATTCTGAACTCTTACTGTAAAATTATTATCCAATTTCAGCTCATCTACGA CTTAAAGTGCGCTAACCCGGTGGCTCGTGTCAGTGTGAAACTTGTCTCAGAAGCTGGAGTTGGAA TCGTTGCTGCCGGTGTGGCCAAGGGAAATGCTGATCATATCACCGTTTCGGGACACGATGGTGGA ACTGGAGCTTCGAGTTGGACTGGTATTAAACACGCAGGATTGCCA Right flanking sequence: Indices 10100031 -- 10100530 CTGAGACACATCAGGTGCTCACGATGAACAACCTGCGTTCACGCGTCGTTCTTCAAGCTGATGGA CAAATTCGTACTGGACGTGACGTCATGATTGCTGCCCTTCTAGGAGCAGATGAGTTTGGAATGTC AACAGCTCCTCTTATTGTTCTCGGATGTACTATGATGAGAAAATGTCACTTGAACACCTGCCCGG TTGGAGTCGCTACTCAAGATCCTGTTCTCCGTGCAAAGTTTGATGGAAAGCCAGAACACGTTGTC AACTATATGTTCATGGTTGCCGAAGAGGTTCGCTATTTCCTCTCCAAACTCGGTCTTCGCAAGTT AGAGGACGCAGTTGGAAGAACTGATCTTCTTTATGCTTCTTCTAATCCTGTCAACAAGAAGGCTA CTATGCTCGAGTTCGGATCCATTCTTAAGAACGCCCAACAAATGTTCCCTAACATCTCTATCAAA GGAGGAAGTGTGAAACAAGTGATTGAGCTCGGAGCTCTGGAGACG Found at i:10108762 original size:7 final size:7 Alignment explanation
Indices: 10108750--10108763 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10108740 AGAAAAGAGG 10108750 AAAAAAT 1 AAAAAAT 10108757 AAAAAAT 1 AAAAAAT 10108764 GTTCTGTCTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAAAAT Left flanking sequence: Indices 10108250 -- 10108749 TAGTTTGCAAAGTTACCTCGTTATCAGGATTTCTGGCTATTCTCATTCTAGTGTGCATTAGAAGA ATAATTGCAACAATTATCACAAAATTAGAAAATAAACGTTCAAACAAGATTTTGACTTTTCACTA TAACTCCTGTTCTATGTCACTCACAAAATAAGATCTGTCAATCATGAATTTACATGATAATTCAT ACTTGAACGTTTTTTGTCCCTCCCATTTCCCTCTAGCAATTAAAGAGAGCCACTTCATGTTTTTT TAATTTCTGATCACATTCTTCCCTCATAAATTGTCTGACGTTAGTTTGAGCCTAACAAACGACAA AAAAAGAATAAGAGTTTTGAACCGCAAGTCTGTTGGCCGAGAGAGCTCAAAATTTATTGCCGGTG GGATTGTGGTTCGGGCGAAGGCAATGTTGCGAAAACGGCAAGAGTCAGAATATTTTGAGAGCGCT GATCATGCGTTCTTTTCTAAATGTCTCAGGAGGAAAGAAAAGAGG Right flanking sequence: Indices 10108764 -- 10109263 GTTCTGTCTTTTTGTTAAGTAAAACTATTGGGGAAATACACATATTGAAAACGTTTTTCAAGCGA GAATTCTAATTAAAGATATGTGTGAACAAGAGTCTTCAAAATTCTGAATTATTCACCAGAATACT TCTCGAGATTCTTCAATTTATTTTGTTCACAGCCAAGTCTTCAATCAAACAAACGTTTCAAAAAT AATGTAGCAAAAAATAGCAGTTTCAGTCCAGTTTCAAACTTTTCAGTCTATTTTTTTGTTTTCAA ATCAAGATATCCTATTTTCATAACAACTACAGACATGAACGAAAACATAAATTTCTTTCGAAACA GAACGTCAATGGTTTTTACTTACTTTGACAGTCTGTTGCGGGCAGCTTTTTGGTTCTTTATCATC TTGGTCATCTTTGATGGTATCTGTGATAACTGTAGCTCCATCATCTGCATCGAGCAATGCTGATT GTGAATTGATATTTGCACCTTCCCACCGAGCTGTCACATGATCTG Found at i:10109321 original size:7 final size:7 Alignment explanation
Indices: 10109309--10109323 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10109299 AGAAAAAATA 10109309 TTATAAT 1 TTATAAT 10109316 TTATAAT 1 TTATAAT 10109323 T 1 T 10109324 GATTTATATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (7 bp): TTATAAT Left flanking sequence: Indices 10108809 -- 10109308 TGAAAACGTTTTTCAAGCGAGAATTCTAATTAAAGATATGTGTGAACAAGAGTCTTCAAAATTCT GAATTATTCACCAGAATACTTCTCGAGATTCTTCAATTTATTTTGTTCACAGCCAAGTCTTCAAT CAAACAAACGTTTCAAAAATAATGTAGCAAAAAATAGCAGTTTCAGTCCAGTTTCAAACTTTTCA GTCTATTTTTTTGTTTTCAAATCAAGATATCCTATTTTCATAACAACTACAGACATGAACGAAAA CATAAATTTCTTTCGAAACAGAACGTCAATGGTTTTTACTTACTTTGACAGTCTGTTGCGGGCAG CTTTTTGGTTCTTTATCATCTTGGTCATCTTTGATGGTATCTGTGATAACTGTAGCTCCATCATC TGCATCGAGCAATGCTGATTGTGAATTGATATTTGCACCTTCCCACCGAGCTGTCACATGATCTG AAAAATCAAATGTTACACATGAAAGAACAGTTGAAAGAAAAAATA Right flanking sequence: Indices 10109324 -- 10109823 GATTTATATAAAATAATTTTAAAGGCACCAATAATAATTTTCCCATCTTCTTGGATTGAAATAGT GGGCCTTCGAAGTACTAATTTTCGTTGGCTCATCCGTCTGGCGTCTGCATTTGAGAATACAGAAG AAACAGGTGAAGCACATAGCTCCAAGAAACCGGTAGGCGGTTGTGATCCGGTCCATAGTTCTTGA TTCTCATCTATTATGAAACGGAGCTGTTCTGGCACCAGACGTGTTCTTTCTGGATCATGCACCAG ACTTCGACTCAATATTTCGGGGATTTGAACTGAGAGACGAGTGTCTAAATGTCCGACATGAAGAT GATGTTGATGTGTCAGTGTTGGTCTCCGATGACTTGTCGAAGATGGCTGCGGGGCCACGTTTGGA GAATAGAAAAACATAATTGAAAGATAGAACAAACTGAGCAAGTCAGTGGTGGACGAGTAGGGGAA ACATAACTAGAGGTTGAAGCTAGTTGAAATCAGTTTTTCGCGTAT Found at i:10114945 original size:8 final size:8 Alignment explanation
Indices: 10114932--10114952 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 10114922 AAAGAAGTGA 10114932 AAAAAAAG 1 AAAAAAAG 10114940 AAAAAAAG 1 AAAAAAAG 10114948 AAAAA 1 AAAAA 10114953 GAACACAAAG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00 Consensus pattern (8 bp): AAAAAAAG Left flanking sequence: Indices 10114432 -- 10114931 GTTGCATTATGAAAACCATCTACATACACGACGAACAAATCCAATAAAAATTTGAATAGTTAGTG AAATGAAACAAACGTTGGTTAATATACAATTTAGTTGATTCATAAAATTAATTTTGTTTTTTTTT CTATTAATCAAAAGAAATTAATTCCAGAGAAATCTCGAGCATAATTTATTTTTATCAAAAAAAAT GCACTGGATCGTACTGATATTGACCATTTCGAACTACACAGACTCTATGACCACAACAGATGCAA ACATGTCTTTACAAAAAGGCAACAAAAACATGACGCCTTATCTCGAATCGTTTTTTTTTTCGTTT GTCTGCTAGTTAGTTTTACATGTGTGTCGTTCGTCTGTGAAACTAAATTATATTTGCGTTTCTTC CACTTTTGCCAAAAAACTGGAAGCTCTGACCGCGACTATATAGGGGCAGGCAAAGGTTAAACCAT GCGGTCACTGAGCACACGTTTTTTTAATTTATTTGAAAGAAGTGA Right flanking sequence: Indices 10114953 -- 10115452 GAACACAAAGACCTTCTTTCAAATGACCAATGTGTAGAAAAAGAGTATAACTAGATTAGAGACAT GAATATTGAGAGCTTAGATGAAAATGAGTGAAATTAGCATTCTAAGAATTATTCAAAAGTACTTC CTTTTTGAACGATACACTTTGAAATAATGAACCAGCTAGGTCTGACCTAGATTTTGTTTTGATTT GTTTTTTAAAAAAGAGTTTACAGGATATCAATATATCAATGTCCAATTTTATTATTTAAAAAATG AAGAAAACGAGTCTTAGATCTTCAAAATAGCCTGAAAAACTTTTGCCCAAAAACTAAACGGAAGA AAGAAAAGAAAACGTGAGAAGAAGTTTCTTCCAAATTTAATAACACATGATATTTTTCACAAACA TCACTCTCATCTCTCATTCAAATTTAACAATGTTTTCCAAATGTTTAAAATACAAACAATCGTTT TTTGATCTCGAAAGTGCAAAATCCAGGCCATCAAACCGAATCCGG Found at i:10115185 original size:8 final size:8 Alignment explanation
Indices: 10115172--10115187 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10115162 AGTTTACAGG 10115172 ATATCAAT 1 ATATCAAT 10115180 ATATCAAT 1 ATATCAAT 10115188 GTCCAATTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38 Consensus pattern (8 bp): ATATCAAT Left flanking sequence: Indices 10114672 -- 10115171 TATGACCACAACAGATGCAAACATGTCTTTACAAAAAGGCAACAAAAACATGACGCCTTATCTCG AATCGTTTTTTTTTTCGTTTGTCTGCTAGTTAGTTTTACATGTGTGTCGTTCGTCTGTGAAACTA AATTATATTTGCGTTTCTTCCACTTTTGCCAAAAAACTGGAAGCTCTGACCGCGACTATATAGGG GCAGGCAAAGGTTAAACCATGCGGTCACTGAGCACACGTTTTTTTAATTTATTTGAAAGAAGTGA AAAAAAAGAAAAAAAGAAAAAGAACACAAAGACCTTCTTTCAAATGACCAATGTGTAGAAAAAGA GTATAACTAGATTAGAGACATGAATATTGAGAGCTTAGATGAAAATGAGTGAAATTAGCATTCTA AGAATTATTCAAAAGTACTTCCTTTTTGAACGATACACTTTGAAATAATGAACCAGCTAGGTCTG ACCTAGATTTTGTTTTGATTTGTTTTTTAAAAAAGAGTTTACAGG Right flanking sequence: Indices 10115188 -- 10115687 GTCCAATTTTATTATTTAAAAAATGAAGAAAACGAGTCTTAGATCTTCAAAATAGCCTGAAAAAC TTTTGCCCAAAAACTAAACGGAAGAAAGAAAAGAAAACGTGAGAAGAAGTTTCTTCCAAATTTAA TAACACATGATATTTTTCACAAACATCACTCTCATCTCTCATTCAAATTTAACAATGTTTTCCAA ATGTTTAAAATACAAACAATCGTTTTTTGATCTCGAAAGTGCAAAATCCAGGCCATCAAACCGAA TCCGGAACACGATTTTAATGTGCCCCATAAAACTTTTTTTCATGTATGAATACCAAAAAAGATGC AACCATTATGAAGCTGTCTCATCTACTCCAAGTATTTTCATTAAAAAAAAACAGTCGCCTCAAAA AATAGACGAGACATTTTTCACACTGTATTTTTTTTTCACACGTCGCCCTTTTTTTTTTCGTATCT ATCGATAAGATACAAATGAGCAAGTTCGAAATAGCAGCATAACTT Found at i:10115358 original size:7 final size:7 Alignment explanation
Indices: 10115346--10115359 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10115336 ACAAACATCA 10115346 CTCTCAT 1 CTCTCAT 10115353 CTCTCAT 1 CTCTCAT 10115360 TCAAATTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43 Consensus pattern (7 bp): CTCTCAT Left flanking sequence: Indices 10114846 -- 10115345 TCTGACCGCGACTATATAGGGGCAGGCAAAGGTTAAACCATGCGGTCACTGAGCACACGTTTTTT TAATTTATTTGAAAGAAGTGAAAAAAAAGAAAAAAAGAAAAAGAACACAAAGACCTTCTTTCAAA TGACCAATGTGTAGAAAAAGAGTATAACTAGATTAGAGACATGAATATTGAGAGCTTAGATGAAA ATGAGTGAAATTAGCATTCTAAGAATTATTCAAAAGTACTTCCTTTTTGAACGATACACTTTGAA ATAATGAACCAGCTAGGTCTGACCTAGATTTTGTTTTGATTTGTTTTTTAAAAAAGAGTTTACAG GATATCAATATATCAATGTCCAATTTTATTATTTAAAAAATGAAGAAAACGAGTCTTAGATCTTC AAAATAGCCTGAAAAACTTTTGCCCAAAAACTAAACGGAAGAAAGAAAAGAAAACGTGAGAAGAA GTTTCTTCCAAATTTAATAACACATGATATTTTTCACAAACATCA Right flanking sequence: Indices 10115360 -- 10115859 TCAAATTTAACAATGTTTTCCAAATGTTTAAAATACAAACAATCGTTTTTTGATCTCGAAAGTGC AAAATCCAGGCCATCAAACCGAATCCGGAACACGATTTTAATGTGCCCCATAAAACTTTTTTTCA TGTATGAATACCAAAAAAGATGCAACCATTATGAAGCTGTCTCATCTACTCCAAGTATTTTCATT AAAAAAAAACAGTCGCCTCAAAAAATAGACGAGACATTTTTCACACTGTATTTTTTTTTCACACG TCGCCCTTTTTTTTTTCGTATCTATCGATAAGATACAAATGAGCAAGTTCGAAATAGCAGCATAA CTTTTGGGTTTTGCAAGAAAAAGAACAAGAAACAGAGAATTGGCAACACTAGAACCCGCACAGGA AATAGTTGGAATTGTGAAGAAGGGCAACCAATTCGTAGTCTAATTAAAACTAACTACTGAAATAT TTATAAGCGGCCGCCGAAATATGGCTAGTGTGGTCAATCCCATTT Found at i:10116165 original size:7 final size:7 Alignment explanation
Indices: 10116153--10116171 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 10116143 TTCCATTGGC 10116153 AGCTTAT 1 AGCTTAT 10116160 AGCTTAT 1 AGCTTAT 10116167 AGCTT 1 AGCTT 10116172 CTATATGTAC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42 Consensus pattern (7 bp): AGCTTAT Left flanking sequence: Indices 10115653 -- 10116152 TACAAATGAGCAAGTTCGAAATAGCAGCATAACTTTTGGGTTTTGCAAGAAAAAGAACAAGAAAC AGAGAATTGGCAACACTAGAACCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCAATT CGTAGTCTAATTAAAACTAACTACTGAAATATTTATAAGCGGCCGCCGAAATATGGCTAGTGTGG TCAATCCCATTTGTTGTCAAAAAAGGTACATATCATAGGGGTGAGGTTTTTTTTTGATATCAGAA TCGGTTTGTTCTTTTTGATTGCTACAGTAAATCAAAAAGAGAAACAATCAAATAAATTTAAATTG TCCACTTATCAAAAATAATGAGATTTAGATTTGCTCAGTTCTGGTCAGGTAAGTGTTAGAAAAAT ATTTTTTTTAAACTCCAAAAAAAGTAAAACGAAAATCGAGCTTTTGCATTTATCTGTTACGTATT CTCTTTTGCTCTGAATATTGCCCTATTTCCATTTTTTCCATTGGC Right flanking sequence: Indices 10116172 -- 10116671 CTATATGTACCTCGTTCTTTTTCGTCTTTCGCTCTTATTTCCAAGCGTTCCGCGTTCTCCCCACA GCGTTCTGTGACCTTCGAGGTCATTTGTTTTTTTCTCTCTCACGTCTCCCGAAACAAATCTACTA CTGGGAATGATTAACAGACCTTTGCCGTGATGTGTTTTTTTAGATCCACTAAAAACCTTGTGCAT TTTTGTTTTTTTTTTTTCGGTGAGCATCCAAAAAAAAAAGAAATGGAGGCGCCGAGCATAAACTA AAAGTCATTTATCAATTGTGGGAGCACATTCGGGAACCAAGGCAAAAAAGGAGATGCTTTCCTGC CTTTTTCTCCTGCTCTCAGTGCAGTTAACTTTTCCCTGCCGTCTTTGAAAAAAACTTATCGGGTC GGAAGATGTCGCCGCCGGTTTTTGACAGCGTTTCTTCCGCAATCCACACCCGAATTATCTGCTAT TTAAAGCAAAGAGCTGTCGCTGGGGGGGGGGGGGGGGGTCGGTTG Found at i:10123287 original size:8 final size:8 Alignment explanation
Indices: 10123276--10123293 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10123266 TTCTTAGACG 10123276 TCGTTTTC 1 TCGTTTTC 10123284 TCGTTTTC 1 TCGTTTTC 10123292 TC 1 TC 10123294 AATGACGATC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.00, C:0.28, G:0.11, T:0.61 Consensus pattern (8 bp): TCGTTTTC Left flanking sequence: Indices 10122776 -- 10123275 CCCAGGAGACCGGTTGTGGGGGCATCAGGAAGTTATGATGGGAATGGTGAGCAGGTGAGCCCGAT GAATGTCCGTATGTACTTCTTCGTCGATCATGTCTTGTGGATCCACGACGTTCGTCCATTAGGTG AGCGCTCACCGATTGCAACATTTTCTTGCAGGGAGAGTTTGAGAGGAGAGAAGAAGTCTATGATA GATATGTTTTGCAAGTTTTATTTTCGAGCATAGTTTTTTGAAACGCAGTAGTTTCTCGGTGAAAG GAACGTCGAACCAAAACCAAACACAACAATTATGAAGAGGGAAATGTGAAAAACGTGTATTGGTG CGAGTTTGAGTGAACGCCAAGATCGGCTCTGTTGTCAAGATGCTGCAAGTGCATGAAAATGCCCA TCCAGACAAAACAGGGCATATTCCATGGGCCACATCGTTTATGATGTTTCTTCTCAACTCGAAAC ATATACCCCCATATTTTGTCGGACATATTCTTCCATTCTTAGACG Right flanking sequence: Indices 10123294 -- 10123793 AATGACGATCTGACGGCAGTGTAGAGCATCTAGACTTGTCTTCTTCATCTGGCTGCCCACTTCCT CTCCCGCCACCAATTTTTTGACCCCTTCTTTTTCCTCTCTTTCTCTCAATTTTCCGTCACTTTCT ACTCATATTCAACAACTCCCTCGACGATCGTTTTGTGCTACTCTCTTCAAAACTGGAATAGTGCT CTCTTAGAAGTTATCCACTTCCGTTTTTGGGGAAATAATCGCACAATCTTGTATCAGTCGAGTTA TCATTCATCACAATGACTACATTTCTTGCTTTTTGAATTATTTTTAGTTTTCTTGTTCGTGAATC GTGGGCGAGATTTCTCACTTTTTGTGCACAAGTCGACATACAATTGGCTGGTCAGCAGAAGTGTG TAATTACAGCACAGAGGGCAACAATTAAAGAGAGCACTAGAAATAAGAAAGATGGAAACAATGTT AAAATTGTAGAGATGACAAAGGATGAAGAAATGTACTTAAAGTGC Found at i:10124580 original size:7 final size:7 Alignment explanation
Indices: 10124568--10124585 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 10124558 ATCTGTTTAG 10124568 GTTTTCA 1 GTTTTCA 10124575 GTTTTCA 1 GTTTTCA 10124582 GTTT 1 GTTT 10124586 AACAGTATTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.11, C:0.11, G:0.17, T:0.61 Consensus pattern (7 bp): GTTTTCA Left flanking sequence: Indices 10124068 -- 10124567 TTTTGAAGTTCACTCTAACATTTCTGAACTTTGGTCGCTGATAGATATATTACAGTTGTTTCTAA TTTTATCAAACAGGATGATAACATAATTGAAATGCAAATTATAGATCCTCGGAAAAATAAAGGAA AAATTATTGGACTGTCTTCTGCGAAATTAGTTTATCTACTGAAATAAATTCCTAATACATTATGT CACATCACAAATGACATATATTTGTTAAAGATGGCTTAGTTTTCTCTACTTTTAAACTGTTCGGA AAACATGTAATCTACACATAAACACAGGCGATTGAGTTTTACGTTTGAACAACTGTCGATTGCAT TGAGAAAAACACAGTTGCAAACACTGCCGATCGTGCTGCGATGTCCGAGTGGTTAAGGAGTTGGA CTTGAAATCCAATGGGCATTGCCCGCGTAGGTTCAAATCCTGCTCGCAGCGAAAAAATGTTTTCT ATTTTATAACACTTAATTAGCGTTTTTTGTGGATGATCTGTTTAG Right flanking sequence: Indices 10124586 -- 10125085 AACAGTATTTTCACAAAAATAATAGAATATAGATTTTTCTTACATTACTTCGAAAGTCTATTTCA CTGAGTTACCAAATACAGAGTATCATTGTTAGGTTATTTCGTCGCAAAACTTGTTAAAAAATAAA ATAACTGAGACAAATAATTATACGTATTCCGTAGACTCAAACTTGTGTGGCGTGTATACCGAGAT TTCAAAAAATCTGCCCTCATTCTTGAAATCAATACAAACGCGCCATGCAGTTTTGTTATTTTCAG TGTAGATAGGAAAAATATTCAGACAACCTGTAGATTTAAAAATATGTAAAGGGTTTTCTCTGATA TTTTAATACTAAATTGCACAAATTATTCTGAACTTACACGCACTGAGAGGTGGTCCGAAAGGAGT GAACTGTAGAAGCAGTGGAGTTCTCGAGACAGCTGGCACACTATTTGTCTTTCGAGCCTGATGTG CAAGTGCAGCGGCCAATGGATCAACTTGGATCAGAGACTCTCGGA Found at i:10128695 original size:8 final size:8 Alignment explanation
Indices: 10128682--10128697 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10128672 ACACTTTAGT 10128682 TTCTTGAG 1 TTCTTGAG 10128690 TTCTTGAG 1 TTCTTGAG 10128698 AGCATTCAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50 Consensus pattern (8 bp): TTCTTGAG Left flanking sequence: Indices 10128182 -- 10128681 TTCTGAAACCGTGACAAGTGTCGAATATCTGCGATTAGCGCTTGGCACATTCCGATTGCAAACAT TCAGGGGCGCCATTGTGTTGAGCACTTCGCAGACGGATCGCGATGGTCGGCGTAATGGTGGTGGA CAGGCGCCACGCGTTGCTGTTGCCATTTTTCGCACAATGTTAGCATCGCTAGCGATAAACACTGA CATTTTCGTTTTCGAGGGGCCCAAAAATGCAGAAGACCAAGTCGAACAACGAGACAGACGACAAT TGTTTCAAAAAGGACAACAATTGTGTATGTAACCGGCGTGACCGGACGGGAGAATAAGAATGAAG AATAGGATGATGTTGTGGTAAAATGATATTTCAGGAAGTAACCAATATATGTGGTTTGGAGTATT CACAGAATTTCTATTTGGAAGATTTTCCAAATAATTGTATTTGTTCAAGATTATTTGAAGTTTAT TGCCAATGTTGTGGTAGGTCCACTCGCACTTCATTACACTTTAGT Right flanking sequence: Indices 10128698 -- 10129197 AGCATTCAAATGTTTTCTTTTTTTTCTGGTTATATTTTATGTTATTTTCCAATGTCTATGAATTT TTTGCAGAAAATGAAAAATCTTCCTTCTCTTACATATTTTCGGGTCAAAGTCGAAAGAACATGGG GATTATAATGGAATAAAAATAAACACTGACCTTGGTTGAGAAGAAGCAAAAGTTCTAAAGTGTCC TCCTGTGACAGTGGGTAGTACCGCTTATGCGAGCGGTTGCTGTGCTTTTTTGTGTTTGACGCCAG GATGTTAGCTTTCTGAGAAAGTATATTTTTCATGAAAGTTGAATAGAAATATAAATTTTTAAACT GAAATTGAAATTGAAAACAATTTTCTGAGAAAGTCAAAAGTAGAAAAAATAAACATCAACAAAAC CACAGTGAAATCAGGAAATTGAGACTTTTGAAATTTTATTGTCATTCTAACCAGGTGTTCTGCTG AGAGTAAATGTTCGACGGAGAACACTTCAATACATTAAAAGTAAA Found at i:10131215 original size:9 final size:9 Alignment explanation
Indices: 10131201--10131219 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 10131191 ATCTACAAGT 10131201 ATATGTAAA 1 ATATGTAAA 10131210 ATATGTAAA 1 ATATGTAAA 10131219 A 1 A 10131220 ATGGGAAATA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32 Consensus pattern (9 bp): ATATGTAAA Left flanking sequence: Indices 10130701 -- 10131200 GAAAGATTTCTAACGTACAGACCCAAAATATGCTCAAATGAACGAATTTCGTGATGAAACTTTCC AAAACTTTCTGATAATTTTTTTTATGGCGATTCAGAATTTTGACAAAAATGGACTGTTTTTACCG AAAATCTGCAATTTTCAAAACTGCTCTGTGAAATATAATATGCAATGAAGGATGATACTCAAATA AAAACTAATCTCCAACCCCTGCGACACGGAGCAGTTTTGAAAATTGGAGATTTTCGGTAAAAAAC GGACCATTTTTTTTCAAATTTTGGACCGCCATAAAAAATTTTTGAGAAATTTTTGAGCAGTTTCT TTACGAAATTCGCTCATTTGAACACTTTTTTTTTTGTCTATACGTTCAAAATCGTCCAAACCGTT AGTCCTCCTTTAAAGACAACATCTTTAAAACCAAAAAGAAAAACAGCTTTCAAAATTTAGATAAA GTTATTTCAATCAAGATTAAGAAATTGATAACTAAATCTACAAGT Right flanking sequence: Indices 10131220 -- 10131719 ATGGGAAATAAGCTACGTTTCAGGAAGGTTAAGCTAAACTCTGCTCAAAAATTTCACCTGAAACA TTCTGGGAACACTTTTCAGTTATACTGAGCAGAAACTCATATTCAAACCTATGCAGGAAATAAAG TATTCATTTCAATATTGAAAGGTTTTTTGGTTGCACTATGAACCATATTTTTTTGGAACATCTCA AAATGTGTATTTGAAATTAGTACATTATTCTTATTAGATGACGTCAATTGGAATCATTATTTCAA ATTTCATGGAAAGAAAATAGCTAATTTATAAATGACTGATGTTTATATTTGTTTCAGTATTTCAA AAAAAGGAGGTAAAGTGGTTTTTCAAAACTGCAAAAAAAGTGAACTTAAAAGTTTGAATAGTTTA TTTTTGCATGCTAAGCTTGTTTAAAAATGATCGAAACCCCGATGACCTTGCTAAGACTTAGGATT AAGTCAAAACAAACCGATTTCTGAACTTCGTCATTTCAAAACAGT Found at i:10134215 original size:10 final size:10 Alignment explanation
Indices: 10134200--10134219 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 10134190 TGTACTTTGG 10134200 AGAAACTTAT 1 AGAAACTTAT 10134210 AGAAACTTAT 1 AGAAACTTAT 10134220 TCAGAAAACA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30 Consensus pattern (10 bp): AGAAACTTAT Left flanking sequence: Indices 10133700 -- 10134199 TAGTGTATTATTTGGAAAGAGGTCACCAAGTTTTTTGGAGCGAGCATAATGCACAAAACATTTCT GTATCATCTTGATGCCGTCGATAGAGTGAAACGCGCGACCCATTTTTTAGACCCCAACCCCGCTG GCAGATGACACCAAAGCTTGATTAGAAGAAGGAGCAGAGCAGCGGAAAAGTTCGGCGGGTAGGGG GGGGGGGGGTGCTAAACAACAACAATGGGATTTTTGACACTGTTGTAAGATAAGTAAGGATAAAG CGAGAATACAATATTTATAAAGTAGAAATTAACAAGCAAATTTCAGAATTAGAACTGTTCGAACA ATATTCCATGTTACAAAAAGAAGTAAGAAACTGTTAAATTCTGAAAAATAACCTGATACTGTACA CTTTTTGAAAATTAAGATTACCGGGCAAAATGTAGGATGTCAATCGATTGAGAAACAAAGGACTG TAAATCCGACATTCTATATTCAAACAAAATTTTATTGTACTTTGG Right flanking sequence: Indices 10134220 -- 10134719 TCAGAAAACAACTATCCTTAAAGCCCTTTCGAGAAAGGAAACTTTGCATGACCAACAAAATAAGA AAAAGACAGAAAAAATATGCACCTTATCAAGATTCTCCGCCTGCTGTGCCCCCAAATTGTTGAAT GGACTCTTGGGAGGTCACTCAACACATTCCAGTAAAACATCTTCACACATTTAAACTAGATTTTT TGATTATCACTTTAGATAGAGCATTCCGTGATAATTTTCATTCCGTGAAAATTTTCATTCCGTGA TAATTTTCATTCCGTGATAATTTTCATTCGGGAATCGCTCTCCCACTATGGGGGAGTCTACGCAA GGTGAGGTCGCCGATTGGGTAATCGAAGAAGCGGAAAGTCTAGCAGACACAATTAGGAAGGGAAT CTTAGCATTTTTGGACACGGACGATGGTCGCAAAATATTAGATGATTTTTATGCGAAGAAGAGGA AGACTGAAGAAAATGATTCTGAAAACGAGACTGAAGAAGGTGAAA Found at i:10144894 original size:8 final size:8 Alignment explanation
Indices: 10144881--10144897 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10144871 ATAGTTTTAG 10144881 TTAAATAT 1 TTAAATAT 10144889 TTAAATAT 1 TTAAATAT 10144897 T 1 T 10144898 GCATTTTCAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (8 bp): TTAAATAT Left flanking sequence: Indices 10144381 -- 10144880 TAATTTCCGGTCAACGTTTTGGCAAATTACCAAAAATTAAAAAAAAAGAGCTTTTGAAGAAATCC AAAGCAATGTCGCATGTTTCGACCCCTACAATGTTTTTTGACAGTAAATAAAAAAATTTCAAAAA ACTTTTGGAAAGTTTTATCATGATATTTGGTCATTTTGAGACCAAAGTAGTGGTTTTTAACAATT TCTCCACTGGCGCTACTCCACCTTTAATTAAAAAAAAACATTTTTACGAATTTCAGGCATATATA CAACCGCATTTTTATTGGGAGATTTACTAAATTTTCGTTACTTTAAAAAGTTTTGAAAAAAAAAC TTTTCTAGGATTTGGATTAACTTTTCATCAGAAGCTAAAAATGGACCTTTTCAATTGTTTTAGTC TATTGGATTTTTTAGTTATCTTATACACTTACTGAAATAAGTTGAAAATTAAAAAAAAATTTTAA TCAGAAAAATTCAAAACTATTTTTAAATGATAAAAATAGTTTTAG Right flanking sequence: Indices 10144898 -- 10145397 GCATTTTCAACATCCGTGAAAGCTAACCTACTCTTATTGGTATTTTTTATTTGCGTGTAATTTGA CCAGAAACTTTAAAACGCCCTAAAGTCACATTAAATTCATATTCCGTTCATTTCGCCACCAGTCC GTTTGCCAGTGAAGAAATGTCCGTATGTATAGGCGCCGCGACAGGGGATGGGCAACTGGCCGCGT GGCGCAATGGATAACGCGTCTGCCTACGGAGCAGAAGATTGTAGGTTCGAATCCTGCCGTGGTCG AAACGTTTTTCTCCTGACTAGGAATAATATTTTAAGTCTTTGGTTCTCATGTTTTCAATAAATGT TACAATATTTTGAGTACGTTGGTTTACTGCAATCTGTTTTATACGACCTTTGGAACATTATGCTG AAAAAAGTAAATATCAACCGGTTCTTTTCTTGAAAAACGTTAGAGCCATTTGTTTTTGTGTAATG TCGTTCCGTTTGAGAAGCTTTGGGATTGTGGTGTAGAGCAGCGTG Found at i:10146663 original size:8 final size:8 Alignment explanation
Indices: 10146650--10146665 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10146640 TTGGGAGTAG 10146650 AAGAGAGA 1 AAGAGAGA 10146658 AAGAGAGA 1 AAGAGAGA 10146666 GGGAGCGTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00 Consensus pattern (8 bp): AAGAGAGA Left flanking sequence: Indices 10146150 -- 10146649 AGTTCAGGACATGCTTGAAGCGTGGCGTGTACTAAACTAACATTCTATATAAACTCATTCAAAAT AAAATACGTTTTTATAGAAGAGATTATAGTACATTGCAAACATTCGAAAACTGTATTTGTAATTT TTCCATCAATAAAACTGTAAATTAGTTACACTGTGAAAACAGTCCCACTTTTGACAGCAACTTTT GGACGTTCACATGCTTGAAATTATTCATGGTGTGCTTCCTAGTTCCTCGAAACCAATGCCCACTA AAGAAATGTTTTCTTACCCACTCAAAATAAACTCTTCTCATCAATCCTATCTAAATTGGAAGACA TTGGGGTCCCGCAAAAAGTGATGTCCTCTCTTGTCCTCTTCTTCCCGGGTTTCCTCCTTCTTCGC ATTTCCTTTTCCTCCGTCCAATGCTTTCCCTTGGCATTGGTGGTAGTGGTGGTGGTTCAGAGAGG AAGAAGAGTGAAGGCCGGAATGCATTTATTGTGAATTGGGAGTAG Right flanking sequence: Indices 10146666 -- 10147165 GGGAGCGTTGCGCGCAGCTGGGCCATTTATTGATCGCTGCTGCCGGGGGCCCCTATGTCTCTTCT GACGAATGGCGGCGGCGACGAGTGTTGTATGTGTGGATGTGTCTGCGTCTCTCGCCCTGCTCCTC TCGTCCCCCTCTCGCCTCATGCAGTAGTGCCGGGGTAGGCGGCGGACAGCTCTACTTTAGACCTC TCTCCGCTATTCTATACCACCACTATTCGCAAGCACTGCGCGTCGTCTCCACTTTGCCATGGGTT CGTTTTGGTTTTTTGTAGTGTTAACGATTCGAAATGTGATAAACATAAATATGATTGGGCTTCAA TGTTTGTTTCTAGATGTATTAGATTGAGATATTAGCTTCATGCTAATATACCGGAAGTAATTTCT GGGCAGCAAAATCGACCTGCACCATGTCCATACTTTGACTATATTGTTATTTCTTCCGTTCTGCT TGTTTGTCAAAATAAGAGGTTTCTGGAAAAATTTCATAATAGTTG Found at i:10149843 original size:7 final size:7 Alignment explanation
Indices: 10149831--10149846 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10149821 CGGTATGCAA 10149831 TTTCATT 1 TTTCATT 10149838 TTTCATT 1 TTTCATT 10149845 TT 1 TT 10149847 GTTTTTCCAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75 Consensus pattern (7 bp): TTTCATT Left flanking sequence: Indices 10149331 -- 10149830 GCTGGAAAAGTCTTACAGGTGGGTATTTGGTTGATAACAAAAAATAAAAGTAAAACCGAACAAAG TTGATTTGTGAACAAAACAATTTAGCACTACATTGTCTACGAAAAACCATAACAACATATATTTT CAGAAAAAAAGAAAGTATTTTAATCAATCTATTTATAAAAACCTTTTGGATCTTCCTGTTCCAAA CTTTTGTTACTTTTGCAATCAAGGTTAAGTTGTACCCCTGCAAAACGTTGAGAAAAGTTTTTTTG TTAAAAAAAACACCAAGATCAAAACAAGTTGTCTATTCTTCTTTTGACCTTCCCAAAATATTCTA TTCAGTCAATTTCTTTTATTTAGGCTGGCGGCTACAAATTCCATCCAACTTGTGCCCGCTGTTCA CGATGTGGATCTCATTTTGGTGACGGTGAAGAGATGTATATGCAAGGAGACGAGATCTGGCATCC ATCCTGTGAGCACGCGCGGACCACCGAAAATATCGCGGTATGCAA Right flanking sequence: Indices 10149847 -- 10150346 GTTTTTCCAAAGTATCCGATTTCATCACATTGAAAGTCAAGATGATGATGATGCTTTCTCAAAGC ATTCGAATAAATTCTTAATTACATTATACTTTAAAAAAAATCAATTTTTAGCCAACTGGACGTGC TGCCACATTGTCTCGAAATGAGCCAAAATATCAATCAACGTTTGGACAGCATCAAGCATACATGT ACTTGTTGCCAGAGGTGGAACAAACCTACTTGAGACATCCAGTGATGAACGCCAAGGAGCCAAAT GCTCCACAATACCACGTTCCACAAGGACCAATCAAGATTCGCAAGTCAAGGATGTCGATGCTCAA AACTGGAATGCAAAGACTTAGTGAGTCCACATACCCGTTTATTAGACAAAATATTTTATTTTCAG CGGAGGATTTGGAAAAGAACATCCCACGTCCAAAATCTCCACACATGGACAATGAGGAGCCAATT GAATTAGCTCACTATCCAGCTGCACATGTGCCCGATCCAGACACG Found at i:10150930 original size:7 final size:7 Alignment explanation
Indices: 10150920--10150933 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10150910 TTTTATCATA 10150920 TAATTAC 1 TAATTAC 10150927 TAATTAC 1 TAATTAC 10150934 GTTGCAGGCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): TAATTAC Left flanking sequence: Indices 10150420 -- 10150919 TTTAGTCATTCAAGAGCTAAGTAAATGTTTGTGAATTTCAATTATAATCACTAAATTGTAGACGC CAAATCAAAGTATTAAGCATCCTTTTTTCAGACTGTGCAGAATAAAAATTAAAAAAAAATGTTTA AACTTAAGAAGAAATGTTTAAATGTGGGAAAAATACATATTCCCGTTGAAACAAAACTCAATTTC AAAACTTTAATTACGCAGGAAATATATTTTCAGCTTCCTGCTATCGAGCGAGAGGATTTCCCTGC TCCACAATTCCCGTATGCCGTCGAAGAACTCAAAAGAAGACTCTCAACATCATCGGTTGAAAATG AGATTTCCGACGATGAATACTCGGAGAGCGACAAGGTTGACGAGGACAAGTTGAGAAAGACTGTT GAAACTTTGGAGAAGTATAATGATTCTTCCATTGCTCACGTCATCAGGCAAAACATCGAAGACAG TCATAAGAAGCAAAGGTATTATATTTTATTGCATATTTTATCATA Right flanking sequence: Indices 10150934 -- 10151433 GTTGCAGGCTGCCACTTCATTGGGATCCAAGAAACGCAAGCAGAACCCCATCTGGCAAGAAAATG CCACATCTCAAATTCCGTTACGACGTCCCAATCAATGCTTGTATGTTTTTGTGCGCTTTCCTAAT TGAATCAGTAGCTGGCTATAGAGCACAACACATACTCCTTTCGTGCGCCTTTTCTTCTTCTCAAG TGCAAACTCATTGCCCTTTTTCATTTTTTCAGCGCCATCTCGTCATCTCAATCGTCCGCGTCCAT GGGTTGTTTGGCAAGGAGGCGAGAGAGACCAGGGAAACAATACACTGCCGTGCTTCCACATTCCA GAGGATAGCCGGGCGAATACACTCAGAGCCGCCACACTTCCGACGGAATTCGGACAAAACTTGTC GCTTGAGAACTTGGACACCACAATTAGCAGCCACTATTCTGAACGTATGTGAAAGTTTCATGGGA AAATTTGGAAAACAGAAGTTGGAAGTGAAGAAAATAGTTTTAAAA Found at i:10151594 original size:7 final size:7 Alignment explanation
Indices: 10151582--10151595 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10151572 ATGTATCGTA 10151582 AAAATTC 1 AAAATTC 10151589 AAAATTC 1 AAAATTC 10151596 TTACTCTGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): AAAATTC Left flanking sequence: Indices 10151082 -- 10151581 TAGAGCACAACACATACTCCTTTCGTGCGCCTTTTCTTCTTCTCAAGTGCAAACTCATTGCCCTT TTTCATTTTTTCAGCGCCATCTCGTCATCTCAATCGTCCGCGTCCATGGGTTGTTTGGCAAGGAG GCGAGAGAGACCAGGGAAACAATACACTGCCGTGCTTCCACATTCCAGAGGATAGCCGGGCGAAT ACACTCAGAGCCGCCACACTTCCGACGGAATTCGGACAAAACTTGTCGCTTGAGAACTTGGACAC CACAATTAGCAGCCACTATTCTGAACGTATGTGAAAGTTTCATGGGAAAATTTGGAAAACAGAAG TTGGAAGTGAAGAAAATAGTTTTAAAACAGTAAAATGAAAAATGGACTCTCTTGCAAAACATTTT TGCAATATTTGAAAAAGGAACGATTTTTGATCTAAAAAACACTGTTTGTTGGTCACTCAAACATG AATTATTAAAATATTGAAATCAGATAACCTTGATAATGTATCGTA Right flanking sequence: Indices 10151596 -- 10152095 TTACTCTGTTATTAATTTTTCTCAAATTAAGAGAATAACGTTTAGACTTCTTTAAACAGTATTTC AAGAACTTTTAAACTGCCGTAGTTGTCACAATAATTGCTTTAATTTTTTCAGACTCGACGACGGA ATCTGGAACAGCTGGAGGACCTCGCTCAGCTGGTGGAGCTGTGCTTCGCTCTTCTCTTCCTGACA TGAGCAAACCTGCCAAGCAGTACGACCTGCTGTTTCTCCAAACGACAAATTCGGACCTCCCAGAA GATGTTGACAGGTGAGTAATGAAAAAATAAGTTAGCATTCAACTGACATTTCCTTTTTTGTAGAC AACATTTGGAACGACACTTGCCGCGAGATCAATTTGAGGAGATCTTCAAGATGTCCTTAATTGAA TTTTATAAGCTGCCCGAATGGAAGAGGATCAATTTGAAGCGAAAACACAAACTATTCTAACATCC TCGTTTTAGCTGTCGTCGTCTTTCCCTCACCCTCACCAAATCATC Found at i:10152897 original size:7 final size:7 Alignment explanation
Indices: 10152885--10152898 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10152875 TCATCCCATC 10152885 TTCAATT 1 TTCAATT 10152892 TTCAATT 1 TTCAATT 10152899 GTAAAAGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (7 bp): TTCAATT Left flanking sequence: Indices 10152385 -- 10152884 ATAGCTTGTCAGCTTTTATTGCCGCTTTCAACTAGTGTTTTTCATTCAAAATTTGTAATTTCTTA ATCAACTTTAAAAGTAACTTTAATTTGTCTTCTACGCGGAATCTCGGTTTTTTTCTCTTCTTACA GTTTTTCTCACAAAAGATTGCATTTTGCATGCGTGCTTTCTTCTATATGAATTGGTGTTCAACGT TTAATTGTCATTACATTTTTATATTATTCTAAATTCCCCTCACATTAATAAGCTTTTTTTAAATT GCTTAGATTATTCATAGCTTTTTTAAACAAAAAATGCTCATTTTTATTTTAAAATCAAAGTGTAT ACCGCCAGTAAAAAAGCTGTAATCAAAATGAATAAAACCTACAGTAGCTAGCTAACATGGGTTTA TCATTTCTTTTTTATTTTACACATGTTGCCTCTTCTAGGCAAATGCTTGTTTCCCATTTGTCTCA ATTTACCTATTATATCCCCGTTATTTGTCTCCAAGTCATCCCATC Right flanking sequence: Indices 10152899 -- 10153398 GTAAAAGAAAAAAAACTGATCAGAATAGGTTATTCCCCATTATTTTAATTGTTTTTTGTTCCTAC TTCACTTCTCTCCTATATGTTTTCATATTCAAAATTTTGTCTCCACCAAATGGGAAAACATTCTA TTCTTATTGTTTTGTTCTTGAATAAACTGCATATGCTTCGCGTAAACAGAACTCAAGAAATAAGT GTTTTGTGTTTGAAAACTTGAAGACGACACACAGAAAAAAAAGCTCTAAATGCAAAAAAGTTGAG AACATCTGTTGAGAATGAATAAAATAAACAATTGAGAAAATTTCAAATGATGATCGAATGAAAGC TCCATTTTTCTTTTCTTTCATTTTGCTCCACCAATCACTCGATAACATTTGTGCTCTTTGGATAA AAATGTTGCAATTCCACTTGCAATTCGTCCTGTTTAACAAATCAGTTGTCATGTTTTGCCAACGA AAACACTTGAAACGTTTGTTTCCAAAAACCGCACTGCCATGTAAT Found at i:10156881 original size:7 final size:7 Alignment explanation
Indices: 10156869--10156884 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10156859 AACACACTCG 10156869 ATTTGAA 1 ATTTGAA 10156876 ATTTGAA 1 ATTTGAA 10156883 AT 1 AT 10156885 ACACTCAATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44 Consensus pattern (7 bp): ATTTGAA Left flanking sequence: Indices 10156369 -- 10156868 TTTCAAAAGCGTAAAAATTTTCTATTGGTTGCATATTTTCAACTCTGAGCAAAACAATTTTTCTG ACTTTTTTTGTGAACAATTGACGTATTTCCTTTATTTCATTGATAATAACTTCAAATAAACAAAG GAACTTATGTATTTTTAAGTAAAGAACAAAATGGGGTTTTTGCGCTTCGAAGCATTTTTCAAAAA TTGTATTTGTACGTGTACAACTAATGAAGAAGTAGTTTGGAAAATAAAATGAAATTAAACAACAA TCAATACGATTTTCAGTAGCAATGGAAAACTGGCAGCAGAAGGCGATAAAGTGATTGTTGCCTTC TATCGTCCCGCAGGAAACAACAATCGATCCGGGCAGTTTGCGTCAAATGTCTTAAAGCCGATAAT TTAAATGTATATGTCTTTCTTTGAATTTGTTTGACACTTTCATTCGATCATCTCCGTGAAAAAAA CAGCAAGAAAAGACACGTTTTGATAATAAAACAAAAACACACTCG Right flanking sequence: Indices 10156885 -- 10157384 ACACTCAATAAATAGAAATAAATAGCTCAGTAAAAGACACAATGACTTTGGAGGGAAAACGAGGA CGCCCAAATAGGGTGCTGTTTGATATCACCTCGCGTTTGGAAAAACAATGTTTTTGGGAATCGGA GAACTTAAAAAATAATATTATAACAGTTTAAACACCCTTTGATAGAAAGAAATCATAGAAATTAG AAAAATATATGAAAGATGAGTTAAAATGATAGATGTTGATTGCAGTCGACAAGAATTTATGCGGA CATCTCAAATTGGCGGTTGGATTGAATTACTGTAAAATATTTATAAAGAAGCGGTGTTATCAAGT TTCTCATTTCACTTGATTGAAAACCTTTTTGTATTAAAAAAGTATACTTTGCTAAATAAGAGTAA CATCAACATGTTCCTTTTTAACTGTATTATTCAATCACAGTTTTGAATTCGGTTGTCATACATAA TATTGTAAACTTCCTACTCAACACAAATAATATTTTTACTTCCAT Found at i:10157886 original size:9 final size:9 Alignment explanation
Indices: 10157872--10157889 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10157862 ATCCTGAACG 10157872 CTTCAATTT 1 CTTCAATTT 10157881 CTTCAATTT 1 CTTCAATTT 10157890 TTTTATTTAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56 Consensus pattern (9 bp): CTTCAATTT Left flanking sequence: Indices 10157372 -- 10157871 TTTTTACTTCCATTTAACTTAATCTAAACATACCACGAGTGATGTACAAGTAGAAGAAATCAGCG TAGAGAACGGTTTGCACGATTCCAGCAACAACCGAAATTGGGTCGAAGAAGCTCTCAGTGTAGTA TCTGAAAAATGTTTAATAGTTATAGTCTACACCATGTGATTGTGGTTTCTCAGAGTTGTTTAGTG CTGTAAATCTACTCAGCAATTCAACAAAATACATCAATACAAACTGACAAAGTTATATTTTAAAA AATCTGAGTGATATCACCACAGGCTGTAAACGTGCAATTTAGAACTTTGTGTTTGGCAGTTGTTA AAGAAACGAGGAAGATTGAGTTGAAATCCGAATATGGGGAATACAGTATGTTTGTGCGGTTCTTA ACATGTATAAATCTTAGCTTCAAACAATCTGCTCAATCAACTATTAATTATTTTTCTGACGATCT TTTTCTATTCAAAAAACTTGAATAGTTCTACCAGAATCCTGAACG Right flanking sequence: Indices 10157890 -- 10158389 TTTTATTTATAGAAACGTATTTCTGAAAGAACAACGTTTACTAAAATATGTTTCTTCCTGAATAC TCCAAAATAAAAAATCTTCAATTATTCTGGATTTCTTCCAAATTTCGAAAATTACCTGTAGACCC AGTTGAGAATGTAGAGGAATCTGTATGACCCGAGTGCAAAGAGATAATGAGCAGTGATAGTTTCC GCATTTCCAGTCCGAGAAAGCATGAAAAGTTGTGGCATAATGGCGACAGCTTCCAAATAGATGGA GAATGTCCACATAACCTGGAAACGTTCGAATTTAACCGTACTGAGAGCCATGCCAAAAATTATGT ACCTCCATGAAGATAAACTCGTGGTTGATGAGCAGTGCGAGGATCATACTTGGAATAACCAAGAA CTCAATACGAAAAGAATCGTTATTTCTGTCGTAGGTTGCCTTAAACTTTGCCCACATCAAGTATA CGGTTCCAAATGATGCAACAAGGTAGAAGATCTAAAATTTCAAGA Found at