TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:500887 original size:11 final size:11 Alignment explanation
Indices: 500873--500897 Score: 43 Period size: 11 Copynumber: 2.3 Consensus size: 11 500863 TCGTATAAAA * 500873 TTTAGAAAATT 1 TTTAAAAAATT 500884 TTTAAAAAATT 1 TTTAAAAAATT 500895 TTT 1 TTT 500898 TTATCATGAT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52 Consensus pattern (11 bp): TTTAAAAAATT Left flanking sequence: Indices 500373 -- 500872 CTCAGTTTTTGCCTAATTCCAATTTGAATTACCGCTAATTGGATTTGTTCGGTGGAGCGCGCTTG CACGTTTTTAAATTTTTTTATTTTATTTTATGTTATTTTCCACCGATTTTTAATGTTTTCGGTGT ATTTTTGCTCGAATTTTAGAGAAAAAGTCAAGATAAATGCAAATTTTCAATTAAAAAGCACGCTT ACAGGCGTAAAAATGACAAAGTACCGATTTTAAACGATTTCCAACCTGAATTAATTAATTTCACT GATTTACGCCTGTAATCGTCTTTTTTAATTGAAAATTTGCATTTATCTTGGCTTTTTCTCTAAAA TTCGAGCAAAAATACACCGAAAACATTAAAAATCGGTGGAAAATAACAAAAAATAAAATAAATAA ATTTAAAAACGTGCAAGCGCGCTCCATCGAACAAATCCAATTGGCGGTAATTCAAATAGTAATTA ACAAAAACTGAGATTTTTTTCAATTTTCAAAAAAATCGTATAAAA Right flanking sequence: Indices 500898 -- 501397 TTATCATGATATTCGGTCATTGTGGTACCGTGTTTTAAAGCAATTTCCCCACTAGCGCTACTCCA CCTTTAAAGTGCTAATGTAAACTTTTTGTACACGTGGTGTCAGAAAGTCCCATTTCGGTTTGATC TACAAAAAATGCGGGAGAAGAGACGCAGATTTCTCAACTGATTTCGCATGGTTAAGAACGTGCTG ACGTCACATTTTTTTGGGAGAAAAATTCCCGCATTTTTTGTAGATCAAACCGTAATGGGACAGCC TGGCACCACGTGTTTGTACAATTACACATTATCCTGGAACTTTCCAGAAAATTTGAATTTCCCGC CAAAACTTATGGGTCTCATCACGATGAGTCACTAACCTCAAACCGATATATTTTCTAAAAACAAA AACTCAAATTTTCTCAAACTACAGTAATCCTACAGTAATCCTACAGTACCCCTACAGTACTACTA CAGTACCTTGGCATTGTCCCCCACCAATATACAACCCAATATACC Found at i:500891 original size:10 final size:11 Alignment explanation
Indices: 500869--500896 Score: 35 Period size: 10 Copynumber: 2.6 Consensus size: 11 500859 AAAATCGTAT * 500869 AAAATTTAGAA 1 AAATTTTAGAA * 500880 AATTTTTA-AA 1 AAATTTTAGAA 500890 AAATTTT 1 AAATTTT 500897 TTTATCATGA Statistics Matches: 14, Mismatches: 3, Indels: 1 0.78 0.17 0.06 Matches are distributed among these distances: 10 8 0.57 11 6 0.43 ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43 Consensus pattern (11 bp): AAATTTTAGAA Left flanking sequence: Indices 500369 -- 500868 AAATCTCAGTTTTTGCCTAATTCCAATTTGAATTACCGCTAATTGGATTTGTTCGGTGGAGCGCG CTTGCACGTTTTTAAATTTTTTTATTTTATTTTATGTTATTTTCCACCGATTTTTAATGTTTTCG GTGTATTTTTGCTCGAATTTTAGAGAAAAAGTCAAGATAAATGCAAATTTTCAATTAAAAAGCAC GCTTACAGGCGTAAAAATGACAAAGTACCGATTTTAAACGATTTCCAACCTGAATTAATTAATTT CACTGATTTACGCCTGTAATCGTCTTTTTTAATTGAAAATTTGCATTTATCTTGGCTTTTTCTCT AAAATTCGAGCAAAAATACACCGAAAACATTAAAAATCGGTGGAAAATAACAAAAAATAAAATAA ATAAATTTAAAAACGTGCAAGCGCGCTCCATCGAACAAATCCAATTGGCGGTAATTCAAATAGTA ATTAACAAAAACTGAGATTTTTTTCAATTTTCAAAAAAATCGTAT Right flanking sequence: Indices 500897 -- 501396 TTTATCATGATATTCGGTCATTGTGGTACCGTGTTTTAAAGCAATTTCCCCACTAGCGCTACTCC ACCTTTAAAGTGCTAATGTAAACTTTTTGTACACGTGGTGTCAGAAAGTCCCATTTCGGTTTGAT CTACAAAAAATGCGGGAGAAGAGACGCAGATTTCTCAACTGATTTCGCATGGTTAAGAACGTGCT GACGTCACATTTTTTTGGGAGAAAAATTCCCGCATTTTTTGTAGATCAAACCGTAATGGGACAGC CTGGCACCACGTGTTTGTACAATTACACATTATCCTGGAACTTTCCAGAAAATTTGAATTTCCCG CCAAAACTTATGGGTCTCATCACGATGAGTCACTAACCTCAAACCGATATATTTTCTAAAAACAA AAACTCAAATTTTCTCAAACTACAGTAATCCTACAGTAATCCTACAGTACCCCTACAGTACTACT ACAGTACCTTGGCATTGTCCCCCACCAATATACAACCCAATATAC Found at i:501358 original size:11 final size:11 Alignment explanation
Indices: 501306--501358 Score: 78 Period size: 11 Copynumber: 4.8 Consensus size: 11 501296 TTTTCTCAAA * 501306 CTACAGTAATC 1 CTACAGTACTC * 501317 CTACAGTAATC 1 CTACAGTACTC * 501328 CTACAGTACCC 1 CTACAGTACTC * 501339 CTACAGTACTA 1 CTACAGTACTC 501350 CTACAGTAC 1 CTACAGTAC 501359 CTTGGCATTG Statistics Matches: 38, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 11 38 1.00 ACGTcount: A:0.34, C:0.32, G:0.09, T:0.25 Consensus pattern (11 bp): CTACAGTACTC Left flanking sequence: Indices 500806 -- 501305 GCGGTAATTCAAATAGTAATTAACAAAAACTGAGATTTTTTTCAATTTTCAAAAAAATCGTATAA AATTTAGAAAATTTTTAAAAAATTTTTTTATCATGATATTCGGTCATTGTGGTACCGTGTTTTAA AGCAATTTCCCCACTAGCGCTACTCCACCTTTAAAGTGCTAATGTAAACTTTTTGTACACGTGGT GTCAGAAAGTCCCATTTCGGTTTGATCTACAAAAAATGCGGGAGAAGAGACGCAGATTTCTCAAC TGATTTCGCATGGTTAAGAACGTGCTGACGTCACATTTTTTTGGGAGAAAAATTCCCGCATTTTT TGTAGATCAAACCGTAATGGGACAGCCTGGCACCACGTGTTTGTACAATTACACATTATCCTGGA ACTTTCCAGAAAATTTGAATTTCCCGCCAAAACTTATGGGTCTCATCACGATGAGTCACTAACCT CAAACCGATATATTTTCTAAAAACAAAAACTCAAATTTTCTCAAA Right flanking sequence: Indices 501359 -- 501858 CTTGGCATTGTCCCCCACCAATATACAACCCAATATACCTTCAAAAAACAAACACGTAATTTTTC CCAAACTACAGTAATCCTACAGTACTCCCACAGTACCCCTGCAGTACTACTACAGTACCTTTTTA GAACATTTTTCTGTTTTTCGATTTTTTCGCAAAAAAAATTCAGTTTTTTCAGCAAAAAAATTGAT TTAAAAATATTTCAAGTTACTTTTTAAAAGCTTTTCAAAAGTTTTTCAATCCGTAAAAATAAAAT TTTACGAATTCTTGTATTTTTTAAATTATCTGAAATTTTTTTTTCTCAAAAAAAAAACTTTTTTT TTCAAGTTTTCAATTAATTTCGGCAAATTTCAAAAATTTTAGGTTTAAAAAAATTCAATTTTTAT GCTTAACATTTTATCGACATAAAAATCATTAACAACTACGAACAATTTGTGGAAAACGTTTTTGG CAGTGGAGCGCACTTGCGCCTCGTATTCAAAAAGCCACACAAAAT Found at i:501445 original size:11 final size:11 Alignment explanation
Indices: 501429--501481 Score: 71 Period size: 11 Copynumber: 4.8 Consensus size: 11 501419 TTTTCCCAAA * 501429 CTACAGTAATC 1 CTACAGTACTC 501440 CTACAGTACTC 1 CTACAGTACTC * * 501451 CCACAGTACCC 1 CTACAGTACTC * * 501462 CTGCAGTACTA 1 CTACAGTACTC 501473 CTACAGTAC 1 CTACAGTAC 501482 CTTTTTAGAA Statistics Matches: 34, Mismatches: 8, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 34 1.00 ACGTcount: A:0.30, C:0.36, G:0.11, T:0.23 Consensus pattern (11 bp): CTACAGTACTC Left flanking sequence: Indices 500929 -- 501428 GTTTTAAAGCAATTTCCCCACTAGCGCTACTCCACCTTTAAAGTGCTAATGTAAACTTTTTGTAC ACGTGGTGTCAGAAAGTCCCATTTCGGTTTGATCTACAAAAAATGCGGGAGAAGAGACGCAGATT TCTCAACTGATTTCGCATGGTTAAGAACGTGCTGACGTCACATTTTTTTGGGAGAAAAATTCCCG CATTTTTTGTAGATCAAACCGTAATGGGACAGCCTGGCACCACGTGTTTGTACAATTACACATTA TCCTGGAACTTTCCAGAAAATTTGAATTTCCCGCCAAAACTTATGGGTCTCATCACGATGAGTCA CTAACCTCAAACCGATATATTTTCTAAAAACAAAAACTCAAATTTTCTCAAACTACAGTAATCCT ACAGTAATCCTACAGTACCCCTACAGTACTACTACAGTACCTTGGCATTGTCCCCCACCAATATA CAACCCAATATACCTTCAAAAAACAAACACGTAATTTTTCCCAAA Right flanking sequence: Indices 501482 -- 501981 CTTTTTAGAACATTTTTCTGTTTTTCGATTTTTTCGCAAAAAAAATTCAGTTTTTTCAGCAAAAA AATTGATTTAAAAATATTTCAAGTTACTTTTTAAAAGCTTTTCAAAAGTTTTTCAATCCGTAAAA ATAAAATTTTACGAATTCTTGTATTTTTTAAATTATCTGAAATTTTTTTTTCTCAAAAAAAAAAC TTTTTTTTTCAAGTTTTCAATTAATTTCGGCAAATTTCAAAAATTTTAGGTTTAAAAAAATTCAA TTTTTATGCTTAACATTTTATCGACATAAAAATCATTAACAACTACGAACAATTTGTGGAAAACG TTTTTGGCAGTGGAGCGCACTTGCGCCTCGTATTCAAAAAGCCACACAAAATGGTGAAATATTCC CAAAAATCAAATAATTGTTTCGCTACGAGACCCAAAATACCGCAAAATAGTAATTTTTACCATAG TAATTTTCAAAAGTGGCACGTAGACCTGATGAAACGTGTCGTTCA Found at i:501598 original size:10 final size:11 Alignment explanation
Indices: 501573--501602 Score: 46 Period size: 11 Copynumber: 2.7 Consensus size: 11 501563 TTTCAAGTTA * 501573 CTTTTTAAAAG 1 CTTTTCAAAAG 501584 CTTTTCAAAAG 1 CTTTTCAAAAG * 501595 TTTTTCAA 1 CTTTTCAA 501603 TCCGTAAAAA Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 11 17 1.00 ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47 Consensus pattern (11 bp): CTTTTCAAAAG Left flanking sequence: Indices 501073 -- 501572 GCATGGTTAAGAACGTGCTGACGTCACATTTTTTTGGGAGAAAAATTCCCGCATTTTTTGTAGAT CAAACCGTAATGGGACAGCCTGGCACCACGTGTTTGTACAATTACACATTATCCTGGAACTTTCC AGAAAATTTGAATTTCCCGCCAAAACTTATGGGTCTCATCACGATGAGTCACTAACCTCAAACCG ATATATTTTCTAAAAACAAAAACTCAAATTTTCTCAAACTACAGTAATCCTACAGTAATCCTACA GTACCCCTACAGTACTACTACAGTACCTTGGCATTGTCCCCCACCAATATACAACCCAATATACC TTCAAAAAACAAACACGTAATTTTTCCCAAACTACAGTAATCCTACAGTACTCCCACAGTACCCC TGCAGTACTACTACAGTACCTTTTTAGAACATTTTTCTGTTTTTCGATTTTTTCGCAAAAAAAAT TCAGTTTTTTCAGCAAAAAAATTGATTTAAAAATATTTCAAGTTA Right flanking sequence: Indices 501603 -- 502102 TCCGTAAAAATAAAATTTTACGAATTCTTGTATTTTTTAAATTATCTGAAATTTTTTTTTCTCAA AAAAAAAACTTTTTTTTTCAAGTTTTCAATTAATTTCGGCAAATTTCAAAAATTTTAGGTTTAAA AAAATTCAATTTTTATGCTTAACATTTTATCGACATAAAAATCATTAACAACTACGAACAATTTG TGGAAAACGTTTTTGGCAGTGGAGCGCACTTGCGCCTCGTATTCAAAAAGCCACACAAAATGGTG AAATATTCCCAAAAATCAAATAATTGTTTCGCTACGAGACCCAAAATACCGCAAAATAGTAATTT TTACCATAGTAATTTTCAAAAGTGGCACGTAGACCTGATGAAACGTGTCGTTCACCTCCTCCGAG CTTCTGCCACGTGAGCTGGTGCTCCGGCATGGCTGATACATTTGTGAAGTTCGCTAAAACAGAAA AATATTATAAATAAGCGGAAAATTTCGTGGTCTCGACACGACAAA Found at i:503560 original size:12 final size:12 Alignment explanation
Indices: 503543--503569 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 12 503533 GTTTTAAAGG 503543 TTTAAAAAATTT 1 TTTAAAAAATTT ** 503555 TTTAAAATTTTT 1 TTTAAAAAATTT 503567 TTT 1 TTT 503570 GCGAATGGAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63 Consensus pattern (12 bp): TTTAAAAAATTT Left flanking sequence: Indices 503043 -- 503542 TTGCCTTTTCTATTATATTATATTAATCACTTGATGATGTACGGCTTTGCGCTTCCTCGTCCACG GTCTCCAGATGACGGAATCCACGTGGCGATACTGATCGATTGTGTTTTGGAGTGGTGGTGCTGCT GGTGCTGGTGGAGGGAATTGAGGTGGTTGCAGTGGATATTACGCTGAAAAATTGAAAGGATTGGT GGAGGAAATGAGAGAAATTTGAGAGCATAAATTTTTAAAAATCGAAAAAAAATTTTTTTTTGCTA TTTTTGGGCAGAAAATGGCGAAAACGGTGTTTTTTTGGGTAAAAAATAATAAAAATTTACAATTT TTTTTGACAGAAAAATGCGGAAAAGCTGTTTTTAGGGTTGAAAAATCAAAAAAAAAATTTTTTTT TGCTATTTTTGGGCAGAAAATGGCGAAAAACGGTTTTTTCAAGTTTAAAACATCAAAACAATTTT TTTGCAATTTTTTTACAGAAAAATGAGGATAAGCGGTTTTAAAGG Right flanking sequence: Indices 503570 -- 504069 GCGAATGGAAATTTTCTGAAAAATCGTGCAAATGCCTAATTTGTGCAAAAATCTTATCTGGTCAA TGATTTTTAAGAGAAAACACCGGTTTTAGAAGGGAAAAAGGCAAAAAACTGGATTTCCAGTGAAT TTTATACTAAAAATGGAAAAAATTCAGAAATTTTTTAAGGAAAAATCAGAATTTTCGCAATTTCT ACACGAAATATATAGAAATTGAGGAGAACCTCGGATTTTTTGCGGAGTTTAAACAATAATTTTTC GGCTAAAATTAACGATTTTCAGAGAAAAAACTTAAAAAAAACAGAATTTCAGTGAATTTTACACG AAAAACGTAGCAAAAAGAGGTTTTTAGGGAATTTCCAAGTCAAATTTCCGAAATTCTTGCGATTT CAACCCTGAAAAATAGCGAAATTGAGGAAAATCTCGGATTTTTGCAGATAAATAATATTTTTTCC AATGATTTCCGTCTCCAAAACACAGAATAATTTACCAATTCGACG Found at i:505181 original size:11 final size:11 Alignment explanation
Indices: 505165--505187 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 505155 AATGTTGTCC 505165 TTGTCCTTGCG 1 TTGTCCTTGCG 505176 TTGTCCTTGCG 1 TTGTCCTTGCG 505187 T 1 T 505188 AGACTCCCCC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.00, C:0.26, G:0.26, T:0.48 Consensus pattern (11 bp): TTGTCCTTGCG Left flanking sequence: Indices 504665 -- 505164 ATTACCGCCAATTGGATTTGTTCGATGGAGCGCGCTTGCACGTTTTTAAATTTATTTATTTTATT TATTGTTATTTTCCACCGATTTTCAATGTTTTCGGTGTATTTTTGCTTGAATTTTAGAGAAAAAG TTAAAATAAATGCAAATTTCCGATTAAAAAATCACTGAAAATGCGTAAAACTGAAAAATATGCTA GTTTCAGGTTTGTTGTCGTCGGAACTCATTATTTTACAGTTTTACGTATTTTTCACATTTTTAAA CACTTTTTAGCAAACATTCTGCATTAATCTTGCTTTTTTACTTCTCTTTCCGATAAAAATACACA ACTAATGAAGAAAATCAGTGACATAATAATAATAATAATAATAATAATAATAATAATAATTTATT ACGCTCGCTGGGAGACGTGAAGGAATACAGAATACAAAAGTTATCATTGTTCGCTTGAACTAGAA TTGGTGCAGTCGGGCAATCGTTTCCATTCCATTAAAATGTTGTCC Right flanking sequence: Indices 505188 -- 505687 AGACTCCCCCATAGTGGGCGAGCGATTCCCGAGTGAAAATAATCACGGAATGAAAAAATAGAAGA AAAATAGAATAAATTAATAAAAAAAATAATGCAAGCGCGCTCCAACGAACGAGTTCAATTGGCGG TAATTCAAATAGGAATTAGGCAAAAACTTTTTCAGATTTTTTCAATTTTCAAAAAATCATATAAA ATTTATAAATTTTTTTTGAAGTTTTTTAACGTGATATTTGGTCATTGTGGTACCATAGGCGTGTT TTAAAGCAATTTCCCCACAGGGTGTAGTCCACATTTAAAAATTAAAAATTAAAAATTCTACCTAA CAAAATCGAAAATTTCAGATTCTCCTTGATTAAAAGCTTTATTATTGAGTAAAGAGTCCGCAGCG TCCACACGGAGAGCGGGTACAAGATGGAAATCTGAAAATATTTAGGATTTTCAAGGGAAAATATC GATTTTTTTTAGCAAAATACCACAGAAATTGCGGATGGAATGAGT Found at i:505257 original size:11 final size:11 Alignment explanation
Indices: 505241--505265 Score: 43 Period size: 11 Copynumber: 2.3 Consensus size: 11 505231 CACGGAATGA 505241 AAAAATAGAAG 1 AAAAATAGAAG * 505252 AAAAATAGAAT 1 AAAAATAGAAG 505263 AAA 1 AAA 505266 TTAATAAAAA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12 Consensus pattern (11 bp): AAAAATAGAAG Left flanking sequence: Indices 504741 -- 505240 TCCACCGATTTTCAATGTTTTCGGTGTATTTTTGCTTGAATTTTAGAGAAAAAGTTAAAATAAAT GCAAATTTCCGATTAAAAAATCACTGAAAATGCGTAAAACTGAAAAATATGCTAGTTTCAGGTTT GTTGTCGTCGGAACTCATTATTTTACAGTTTTACGTATTTTTCACATTTTTAAACACTTTTTAGC AAACATTCTGCATTAATCTTGCTTTTTTACTTCTCTTTCCGATAAAAATACACAACTAATGAAGA AAATCAGTGACATAATAATAATAATAATAATAATAATAATAATAATAATTTATTACGCTCGCTGG GAGACGTGAAGGAATACAGAATACAAAAGTTATCATTGTTCGCTTGAACTAGAATTGGTGCAGTC GGGCAATCGTTTCCATTCCATTAAAATGTTGTCCTTGTCCTTGCGTTGTCCTTGCGTAGACTCCC CCATAGTGGGCGAGCGATTCCCGAGTGAAAATAATCACGGAATGA Right flanking sequence: Indices 505266 -- 505765 TTAATAAAAAAAATAATGCAAGCGCGCTCCAACGAACGAGTTCAATTGGCGGTAATTCAAATAGG AATTAGGCAAAAACTTTTTCAGATTTTTTCAATTTTCAAAAAATCATATAAAATTTATAAATTTT TTTTGAAGTTTTTTAACGTGATATTTGGTCATTGTGGTACCATAGGCGTGTTTTAAAGCAATTTC CCCACAGGGTGTAGTCCACATTTAAAAATTAAAAATTAAAAATTCTACCTAACAAAATCGAAAAT TTCAGATTCTCCTTGATTAAAAGCTTTATTATTGAGTAAAGAGTCCGCAGCGTCCACACGGAGAG CGGGTACAAGATGGAAATCTGAAAATATTTAGGATTTTCAAGGGAAAATATCGATTTTTTTTAGC AAAATACCACAGAAATTGCGGATGGAATGAGTAGAAGAGCCGGGTTGACTTTCCGGGGAAAGTTT CGACGTGTGATGCTCGTCTCGGAGAGCCTCATTCCCAAGAATCCG Found at i:510484 original size:17 final size:16 Alignment explanation
Indices: 510462--510494 Score: 57 Period size: 17 Copynumber: 2.0 Consensus size: 16 510452 AACACTCAAA 510462 AAACGGGACAACGGGAC 1 AAACGGGAC-ACGGGAC 510479 AAACGGGACACGGGAC 1 AAACGGGACACGGGAC 510495 TTGACACCCT Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 7 0.44 17 9 0.56 ACGTcount: A:0.39, C:0.24, G:0.36, T:0.00 Consensus pattern (16 bp): AAACGGGACACGGGAC Left flanking sequence: Indices 509962 -- 510461 GAATTCCCTCCAAAATGAGAACTGCAGGACCCATCAGCGATTTGAGTGGGCGGAGTCCGAGGGCG CTGATTGGTCGTGCAGTTCTAATTTTGGAGGGAATTCAGCCAAATTTGAAAAATCTCGTTTTTTT TGCAATTCTTTTGTGGTATTTTCGACATGGGGTTCTTTCTGGCTTTCCTCATCAAGGGTGTCAAT GTCCCGTAAAAATTTCGAAAACGGGACAACGGGACGTCCCGTTTTTTTGAAAACACTCAAAAAAC GGGACAAACTGGGCGGTTAAAAAAAAGAGTGCATAGTTGGCGTAAATTTTAGTGTATTCGAGGCA AATTATAAAAAAAACTGCATGTAAGTCATTAATCTGCATGAATTTAAGTCTTGAAACAAAACTCA AAAACAGAACTTTAAAATGTGCAACAAAATCATGAGAGAAATTGTCCCGTTCCCGTGATAATTTT GAAAACGGGACAGCGGGACGTCCCGTTCCCGTGAAAACACTCAAA Right flanking sequence: Indices 510495 -- 510994 TTGACACCCTTGTTCCTCATTAAAATTTTCGCGCTCCATTGATAATCGCCCTGGGAAAGTCGTGT ACTCCACACGGACAAATCACATTTAGTTTTACAACTAAAATCGAGAAAATTGGGAGAGTTTTTGC CGCGAACCTGGCCTAGTTCGCGGCAAAAACTCTTCCATTTCAAAATATGGGCGAAGCCAGAAATC CGTGATATTTTCAGCATATTTTTTTGATTCGAAGCAAATCTCAGTTTCTCACCACAACGAACAAC TTCACATTCGGATGCCGCCCGTCTTCGAAACGTGGAATTCCAACTGAATTCACCGATTCGACACT TGAACCGGGTGACATCATCATATTTTCAACCAGCTCATACTCGAACTCCGGAATATCCGGCACCA CATCAATCGGTGCTGGTTCTGGCGGTGGCGGCTCAACTGACACTTTTCCTTGATCTAAAATTTGT TTTTTTCTGAAAATTTGTCACTGTACCAAATCAAAAAAAAAACCT Found at i:514889 original size:11 final size:11 Alignment explanation
Indices: 514870--514892 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 514860 AACCGCCATA 514870 AAAAATTTTTG 1 AAAAATTTTTG * 514881 AAAATTTTTTG 1 AAAAATTTTTG 514892 A 1 A 514893 GCAGCTTCAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48 Consensus pattern (11 bp): AAAAATTTTTG Left flanking sequence: Indices 514370 -- 514869 CTCCGTGATTGGAGAAAATTAAAGGAGGACTAACGGTTCGGACGATTTTGAACGTATAGACCCAA AATGAGCTCAAATGAATGAATTTCGTAATGAAACTGCTCAAAAATTTTTATGGCGGTTCAAAATG TTGAAAAAATTACACTGATTTTGGCTAAAATCACGAATTTTCCCATTTTTCCGTGTCACATCTGT TCGAAGTTGGATTTTTTGGAATTATCGTTTTTTATTACATATATTGGTAGTTTATCTCATTTAAT TTCGTCGATTAAAGTACATTTAAAGCCGATAGGTAACCAATTTCGATAATTTTTGGTCACCTATC GGCTTTAAATGTACTTTAATCGACGAAATTAAATGAGATTAATTACCAATATATGTAATAAAGGA CGATAATTTCAAAAAATCCAATTTCGAACAGATGTGACACGGAAAAATGAGAAAAATTCGTGATT TTCGCCAAAAACAGTGTAATTTTTTCAAAATTTTGAACCGCCATA Right flanking sequence: Indices 514893 -- 515392 GCAGCTTCATTACGAAATTCGTTCATTTGAGCTCATTTTTGGTCTATACGTTCAAAATCGTCCGA ACCGTTAGTCCTCCTTTAAGTTTAAAAAAAAAACGGCATATTTTGCCCAGTTTCTCTCCAAAACT CACCGGCAAAATGCGACTCTGATTCATCGGATCCACCAGTGGCTTGACATTTCCCGAATAGGTGA CCCCACTGAACGAGTAGGATCCCGACGTCGATGACGAGCTCTTCGACAAGTAGTATCCGAGGCCC ATGGTGACTGCGGCGGCGGCTCCGATTTGAACGTACGGTGGAAGGGAAGAGTTCGAGTTTGGTGC CGAAATGAAATCGACAATACTTCTGTAACAATTGAAATTATATATAGAGAGGACGGGTGATGATG ATGAGTCATCCAGGTTGTTGTTGTCGCGCGCGCGCGCCCGCACTGTTCCCCACAAAACAAACAAC TTATTTGAAATTATGAAATCGAAGTTTCTTTGTTATTTTATTTTA Found at i:517257 original size:12 final size:12 Alignment explanation
Indices: 517234--517257 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 517224 GCTTGCATCG * 517234 TTCGATTTTTTT 1 TTCGATTATTTT * 517246 TTCGTTTATTTT 1 TTCGATTATTTT 517258 ATTTATTTTC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75 Consensus pattern (12 bp): TTCGATTATTTT Left flanking sequence: Indices 516734 -- 517233 CCGGCAAGGGGGCAAAAGTTTCGAGAAGTTGTGTTGCGCGCGAAGGAGATGGAGAAGATGGAGAA GATAGGCAAACACGTACACCTCCTCAAACAGTAGTAGTAGTGATAATTGATTTGATTAGTGATTC GGGTGGGCAAAACGAGAGAGATAGAAAGAGAAAAAGCGAAGAGGACAACGAACACGTGTAATCAA CCGTGTGCCAAAGTTCTCGCCCTTTGGACTAATTGCAGTTTTTTTGGAGGAAATTCAATTAACAC TGAAAACTAGTTCGTTTAAGTGTTTACGCTGAATGGGCCAGGTTTTGAGGGAAAACGATTTTCGA AGAACTTTAAATGTGGGGTACCGAAATCTGAAAAATATTTTAAATTGACTCCAAATTTTCCCCTG ACTCCGAATATCGATGCGAAAAAATTCAAAAAAAATTTTCCTGATTTTATATTTAAGCTTGAAAT CGCCGAATTTCATTTAGAAATTCGCATTGGAGCGCGCTTGCATCG Right flanking sequence: Indices 517258 -- 517757 ATTTATTTTCGCCGAATTCAATGTTTTTAAAGCCAGTTTCATTCATTTTTGTCGAGTTCTCATCG AAAATTTTTTTGACAAAAATTAATGAAACTGATTAAAAAATTAAATTCGGCGAAAATAAGTAAAA TAAACGAAGAAAATCAAACGATGCAAGCGCGCTCCAATGCGAATTTCTTTGGGCGCGAAGTTGAA AAAATGGCCCGGGGCACAAATGAAATTCGGCGATTTCAAGCTTATATATAAAATCAGGGAAATTT TTTTGAATTCTTTCGCATCGATATTCGGAACCAGGGAAAAATTTGGAGTCAATTAAAAATATTTT TCAGGTTTCGGTACCCCGCCTTTAACGGATTTTTTGGCTTAAAATTGGAAACTCTTGGTATAAAA CTTGTAGAAACACCGAGTAAACTGTACACGTTTTAGACGATAATTCAAAAGTATCGAGGGAAGTA TCCAGAAGTTGAAAAATTGCGAAAAACAGGTAAAATAAGGAATTC Found at i:517925 original size:11 final size:11 Alignment explanation
Indices: 517903--517928 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 517893 ACACGAGATT * * 517903 TGAGGAATTTC 1 TGAGCAACTTC 517914 TGAGCAACTTC 1 TGAGCAACTTC 517925 TGAG 1 TGAG 517929 TAAAGCCAAC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31 Consensus pattern (11 bp): TGAGCAACTTC Left flanking sequence: Indices 517403 -- 517902 AAACGATGCAAGCGCGCTCCAATGCGAATTTCTTTGGGCGCGAAGTTGAAAAAATGGCCCGGGGC ACAAATGAAATTCGGCGATTTCAAGCTTATATATAAAATCAGGGAAATTTTTTTGAATTCTTTCG CATCGATATTCGGAACCAGGGAAAAATTTGGAGTCAATTAAAAATATTTTTCAGGTTTCGGTACC CCGCCTTTAACGGATTTTTTGGCTTAAAATTGGAAACTCTTGGTATAAAACTTGTAGAAACACCG AGTAAACTGTACACGTTTTAGACGATAATTCAAAAGTATCGAGGGAAGTATCCAGAAGTTGAAAA ATTGCGAAAAACAGGTAAAATAAGGAATTCAACGCGTGAATTTTGCATTTTTAGACTGAAAATAG TGTGGTATTTCTTCAAATATAGACGAAAATATCGACTCGCACTGGTTTTCGATCGATATTTATAG GTCGAGTTCATTGCTATGCACAACATTCCGGGAAAACACGAGATT Right flanking sequence: Indices 517929 -- 518428 TAAAGCCAACAAAACATTTTGTACAATTTTCTTGTTGGTCTTGCTCAGAAAATTTTCAATCAAAA ACCAATTGGAAATCGATATTTTCTGCTAGTTTTGAAAAAACACATGATTTTTAATCAAAAATTGT TAAATTCATGCAATTTTCCAAAGTTTTACACGATTTTTTCTCTGGAATTCACATGCTTTTTAAAG CAAACGGCCGTTTCTCGTTGTTGGCTTCCACGCGATTCCATAGAAACACTGGGGCACCAGAGAAA CCGGGGTCGAAGCAAATGACCAACAAACAACAAACGGATGTGTGCTTTTTCTTCGTTTTCGTCTT CACGAGGAACCACCACGCAAAATGGAACTACAACTACGATTGATAACGAAAAAAAAAAAGAAGAG ATGATGATAGTTTTTGCAGCAATAAAAAGAGTGATAACAAGATACACTCTATCTCACCCACACCT TTCCGTTCAAAGATAAGGAAATAAGATTCGGGGGGTTCAAAGTGT Found at i:519085 original size:22 final size:22 Alignment explanation
Indices: 519039--519085 Score: 66 Period size: 22 Copynumber: 2.1 Consensus size: 22 519029 AAAATTATGC * 519039 AATTTTCTAGAATTCCAAGCGA 1 AATTTTCTAGAATTCCAAGCAA ** * 519061 AATTTTCTAGAATTTGAGGCAA 1 AATTTTCTAGAATTCCAAGCAA 519083 AAT 1 AAT 519086 GATACGGAAA Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34 Consensus pattern (22 bp): AATTTTCTAGAATTCCAAGCAA Left flanking sequence: Indices 518539 -- 519038 TGCCGGGGAATAAAACGAGTTATATGACCAACACAACGAGCGACGTTGCTGCTGCGTTTCCTCAC TCTCTCCTAGTGAGCGTGTGTGCGCACCACACTCACATGAGCGCATGCAAGGGTGTATGCGCAAG TGGTACATCGACTCGGTATGAGAAGGACAGAGCAGTAGTAAGGAGCACACGTTATGTTGCTCCAC TACTCACTGTTGCGTACCGTGTAGCCTCTGCGGGCCACCGCGGTGCAAAGTACAGTGGAAGGAGG AGAGTTGAAAAATTGGTGTTTATTTTACTTTTAAACTCGTTTTCCTCCGGATTTTGAAGAGAATT GGTTGACTTTTTGAATTTTAGGCGAAAAGCGCGGGAAAAATCGAAAAAAGATGTGAAAACGAGTG AATTTTAGGGCAAAAGTGAACCGACAATTGTTATGAGCAATCGGGCTTCTCGGTCGGAAAACAGA TCACAGAAAAATCGGAAAATCCAGCAAAATACTCGAAAATTATGC Right flanking sequence: Indices 519086 -- 519585 GATACGGAAACCAACGAGAAATCCAGAAAAAAAAACTATTTTCATCGAATTCTAGGTGAAAAGCT CTGAATTATTCGATTCTCCGTCGGGGTAGACTCAAAAATTATGCAATTTTATAGAATTCTAGGCC AAACATCGCAGGATCGCCTACACAATTTCCGGAGAACGATGAAAATCGGCAAATCTGAAGCAAAT AGGAGTGAAGGAAGAGGCTTCGGATCAGTTTTTCTGAAGAAAATACAAAACTTTCGCTTTCGCAA AACTTTCGGGAAAATTCTCAGAAAAGGCGTCAAAAGCTCAAAAAATCGACGTTGCACGATTTTCG ACGGAAAAATAGAGTAAAATATCCGAATTTCTGCTTTAAAACTCGAAAAATTGCCCAAAAATCCG TTTGTTTTCGCCAAATTTCTCCTATTTGGGGGTCACAAGGCGAGCGGGAGCCGCCGACGACGAGA TGAAGAGCTCCACAGAGCCCCTGAGCCAACAACACAACACTCACC Found at i:520102 original size:12 final size:12 Alignment explanation
Indices: 520072--520102 Score: 41 Period size: 12 Copynumber: 2.6 Consensus size: 12 520062 TAATTTTAAT 520072 ATTTTTTCTTTC 1 ATTTTTTCTTTC * * * 520084 TTCTTTTCTTTG 1 ATTTTTTCTTTC 520096 ATTTTTT 1 ATTTTTT 520103 AAGAATATTG Statistics Matches: 14, Mismatches: 5, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.06, C:0.13, G:0.03, T:0.77 Consensus pattern (12 bp): ATTTTTTCTTTC Left flanking sequence: Indices 519572 -- 520071 ACACAACACTCACCCAAAAATATTGGAATTCTCCGGAAGGAAATCGTCGTACGACGACGGCGGCG GCGACGGTGCCATTTTTCATGGGGAAAATTAGAACCTTGTTCGAATTTGTGATTTATTATCGATT TTCTATGTGCCACGTGTGCCCTATTGCGTGACCCACCTGATTAGTTGCGCGAGTATTTTGTCAGT GCGGTCGACGATCACCCGAAGAATGGAGAAATTGTCTGAAAAATGCGAAAATTGGCTATAAAACG ACGGAAAAAGAAATAAAAACAAGTGAAATGAGGCCGAGAGGCAGGTGAATTGTTTATGCAATTTT AGAAATGTGATATTTTGGCGGTGTAGATCGAAAAAAATGCGAAAAACACGAAAACAGGTCGAGAA ATTCGCAAATTTTCGACGACTAAAATTCAAATGCACAACGTTCGCGCGCGCGCCGAAGTACGGTA GGTCCCGCATTTTTGCGCGCGCGAAATTCAAATTTTAATTTTAAT Right flanking sequence: Indices 520103 -- 520602 AAGAATATTGTGCAAAAAATTCGTTCATTTTTCGAATAAAATTGTTAAAAAAGACGAAAAAAAAA AGAAAAAATAAGACAATTTCTCGGTGGCATACAAATAAATACAAGTTATTGTTCGGGAAAAAAAT CACAATTTTACATTAAATCCAGGTTTGTAATAAAATCAATTATTATTTTATTTTCTTCCAAATCC GGCACATGGATTTGGGCATCCGCTGGTCATGCAGCAGCCACCTCCACTCCCTCCGAGACACGCCA ACGACTCGCCGGTTGAGATGGCGAGAAGCACGAAGCAAACGACCATGACCTGGAAGAAAATGTGT GAATGTTAAGGTCTCTTAATATTCCAATAAAATTATTTGGTTTTTTTTTACCGGTGTTCTTGCCA GAAAAGTGCAAAAATTAATTAAAACTCTAATCGTGGCGAGACCCATCTTAGAAACGAGAGTATGC GCCTTTAAAATTGGGCTACCGTAATAATCGAATTTTTGCAATCTT Found at i:520163 original size:11 final size:11 Alignment explanation
Indices: 520149--520175 Score: 40 Period size: 11 Copynumber: 2.5 Consensus size: 11 520139 TAAAATTGTT * * 520149 AAAAAAGACGA 1 AAAAAAAAAGA 520160 AAAAAAAAAGA 1 AAAAAAAAAGA 520171 AAAAA 1 AAAAA 520176 TAAGACAATT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.85, C:0.04, G:0.11, T:0.00 Consensus pattern (11 bp): AAAAAAAAAGA Left flanking sequence: Indices 519649 -- 520148 TTTTTCATGGGGAAAATTAGAACCTTGTTCGAATTTGTGATTTATTATCGATTTTCTATGTGCCA CGTGTGCCCTATTGCGTGACCCACCTGATTAGTTGCGCGAGTATTTTGTCAGTGCGGTCGACGAT CACCCGAAGAATGGAGAAATTGTCTGAAAAATGCGAAAATTGGCTATAAAACGACGGAAAAAGAA ATAAAAACAAGTGAAATGAGGCCGAGAGGCAGGTGAATTGTTTATGCAATTTTAGAAATGTGATA TTTTGGCGGTGTAGATCGAAAAAAATGCGAAAAACACGAAAACAGGTCGAGAAATTCGCAAATTT TCGACGACTAAAATTCAAATGCACAACGTTCGCGCGCGCGCCGAAGTACGGTAGGTCCCGCATTT TTGCGCGCGCGAAATTCAAATTTTAATTTTAATATTTTTTCTTTCTTCTTTTCTTTGATTTTTTA AGAATATTGTGCAAAAAATTCGTTCATTTTTCGAATAAAATTGTT Right flanking sequence: Indices 520176 -- 520675 TAAGACAATTTCTCGGTGGCATACAAATAAATACAAGTTATTGTTCGGGAAAAAAATCACAATTT TACATTAAATCCAGGTTTGTAATAAAATCAATTATTATTTTATTTTCTTCCAAATCCGGCACATG GATTTGGGCATCCGCTGGTCATGCAGCAGCCACCTCCACTCCCTCCGAGACACGCCAACGACTCG CCGGTTGAGATGGCGAGAAGCACGAAGCAAACGACCATGACCTGGAAGAAAATGTGTGAATGTTA AGGTCTCTTAATATTCCAATAAAATTATTTGGTTTTTTTTTACCGGTGTTCTTGCCAGAAAAGTG CAAAAATTAATTAAAACTCTAATCGTGGCGAGACCCATCTTAGAAACGAGAGTATGCGCCTTTAA AATTGGGCTACCGTAATAATCGAATTTTTGCAATCTTGCAATTGTTGATTTCCGAAGAGCGTTAA CAAGAAAACATTTGATAGAAATGACACATGAATTAGGTAAAATTT Found at i:520863 original size:12 final size:12 Alignment explanation
Indices: 520839--520864 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 520829 CAACAAAAAT * * 520839 CGAGACGCGACG 1 CGACACGCAACG 520851 CGACACGCAACG 1 CGACACGCAACG 520863 CG 1 CG 520865 CCGTAAATCT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.27, C:0.38, G:0.35, T:0.00 Consensus pattern (12 bp): CGACACGCAACG Left flanking sequence: Indices 520339 -- 520838 CTCCACTCCCTCCGAGACACGCCAACGACTCGCCGGTTGAGATGGCGAGAAGCACGAAGCAAACG ACCATGACCTGGAAGAAAATGTGTGAATGTTAAGGTCTCTTAATATTCCAATAAAATTATTTGGT TTTTTTTTACCGGTGTTCTTGCCAGAAAAGTGCAAAAATTAATTAAAACTCTAATCGTGGCGAGA CCCATCTTAGAAACGAGAGTATGCGCCTTTAAAATTGGGCTACCGTAATAATCGAATTTTTGCAA TCTTGCAATTGTTGATTTCCGAAGAGCGTTAACAAGAAAACATTTGATAGAAATGACACATGAAT TAGGTAAAATTTGGTTTTTTTTTAGATTCTTATAATTCAGATTTCTATTTTGGACACGGAGTTCT GGCCTTCCTCATTGAATTTTTCGCGCTCCATTGACAATCGCCTGCCGGACAACGAGTGGGAAAGT TGTGTACTCCACACGGACAAATACATTTAGTTTAACAACAAAAAT Right flanking sequence: Indices 520865 -- 521364 CCGTAAATCTACCACAGATATGGCCGAGCCATAATGGCCTAGTTCGGCAAACTCTTCCATTTCAA TTTATCGATGTCAGAGTGTCCCATTTCAGCTTGATCTACCTAGATCTACAAAAAATGCGGGAATA ATACGTAGAGTTCTCAACTGATTTCGCATGGTTAAGTACGTGCTGACGTCACATTTTTTGGGCTA AAAATTCCCGATTTTTTTGTAGATCAAAAAACTGTGATGGGACAACCTGACACCACGTGATTTAT GAGGAAAGCCAGAAATCCGTGATTTGGAGAGCACAACAAAAAAAGAAATTCGGCCACTGATTCGC GGCCACGAGCCACTGTGCCTTCTCAAGATATTAGTTAATAATTGACGCTGTGAGACCCACAGTTA AAGGCGCATGCTCAGCATGACTGGCCAATCTAATAGCATCTACAATGATAATTGAAAAAAAAACT CACAGTTTGGCAAAGTTTAGCGACGAGTGACATAATTCTCCGAAA Found at i:522953 original size:11 final size:11 Alignment explanation
Indices: 522937--522959 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 522927 CTAAAAGTAT 522937 ATGATTTTTCA 1 ATGATTTTTCA 522948 ATGATTTTTCA 1 ATGATTTTTCA 522959 A 1 A 522960 AAATTTCAAG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52 Consensus pattern (11 bp): ATGATTTTTCA Left flanking sequence: Indices 522437 -- 522936 CTGAGAAAAGAGCCGAAAGCTTATTTTCCACGTATCAGGGATCGGAATCCCACCTAGCTAGTTCA TCCTATTGCATCATTGAAGCATCTTCCGGATTCTCCACTTTGTTTGCTTTTCGAAATCGTTTCAA ACTGAAAGCCGCGCTTTCAAGGCCGTCTTCTTCCGATTTTCCGATCTACCTTTTGTTGATCATCA CGTGCCTGGCGATCACAACACTGTTCAACCGGAATATCTGAAGATGTTCCACCAAATGGATCGTT TTTCTCAGGACGGAAGAATACTAATTTGCAAAAAGTCTGTTCTGTTCTAAAAGTTCTGAATCTTC TGAAAAAATTTCAGACTTAGATCCTGTCATTACATGGGCAAGCAGTGGAGTCGGAGATTTTTTAT CAAAATATATGGATAGGTAATCAGGGAGAGACTGGCTCCTTTGTTACAATATATTAGGTTTTGTT CTTTAAAATGTTCAAATGAAGCTGAAGAGTTCCGGCTAAAAGTAT Right flanking sequence: Indices 522960 -- 523459 AAATTTCAAGGTATAACTCTGAAACTAAAATTTAAAAAAGAAACTAAATTGGATTTTAATGTTAG TTAGTTTATTAACAGAAAGAGCAGTATTTTTTGATAATTGTAACCTGAAAACTCTATTTTTCTAG TTTCGTGAAGTAAAAATGTTTTATTATGTGACATTTATTGAAATTTAATTATAATACACTGTTAG AAATATTTTATTATCTAAAAAAGTAAATTGGATTATAATGTTAATTATTTTACTATCAAAAAGAT CAGTATTTTGTGATAGTTTTAACCTAAAAACATTTCTGAAGATCGTTTTTTGTGAGAAAAAATTA TTTTAATATGTGTCATTTAAAGCAACTTTTAAAAAATTGCGGTTTAGAAATGTTCAGCTATCAAA AAAAAGTACATTGGATTTTGGTGCCAGTCAATTTATCAACAGAAAAAGTGGTCCTAAAATAATTT CCAAACTTATTAATGGTGGTAGCATTAAAAAACACTTTTTTTTGG Found at i:522965 original size:11 final size:11 Alignment explanation
Indices: 522940--522965 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 522930 AAAGTATATG ** 522940 ATTTTTCAATG 1 ATTTTTCAAAA 522951 ATTTTTCAAAA 1 ATTTTTCAAAA 522962 ATTT 1 ATTT 522966 CAAGGTATAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.35, C:0.08, G:0.04, T:0.54 Consensus pattern (11 bp): ATTTTTCAAAA Left flanking sequence: Indices 522440 -- 522939 AGAAAAGAGCCGAAAGCTTATTTTCCACGTATCAGGGATCGGAATCCCACCTAGCTAGTTCATCC TATTGCATCATTGAAGCATCTTCCGGATTCTCCACTTTGTTTGCTTTTCGAAATCGTTTCAAACT GAAAGCCGCGCTTTCAAGGCCGTCTTCTTCCGATTTTCCGATCTACCTTTTGTTGATCATCACGT GCCTGGCGATCACAACACTGTTCAACCGGAATATCTGAAGATGTTCCACCAAATGGATCGTTTTT CTCAGGACGGAAGAATACTAATTTGCAAAAAGTCTGTTCTGTTCTAAAAGTTCTGAATCTTCTGA AAAAATTTCAGACTTAGATCCTGTCATTACATGGGCAAGCAGTGGAGTCGGAGATTTTTTATCAA AATATATGGATAGGTAATCAGGGAGAGACTGGCTCCTTTGTTACAATATATTAGGTTTTGTTCTT TAAAATGTTCAAATGAAGCTGAAGAGTTCCGGCTAAAAGTATATG Right flanking sequence: Indices 522966 -- 523465 CAAGGTATAACTCTGAAACTAAAATTTAAAAAAGAAACTAAATTGGATTTTAATGTTAGTTAGTT TATTAACAGAAAGAGCAGTATTTTTTGATAATTGTAACCTGAAAACTCTATTTTTCTAGTTTCGT GAAGTAAAAATGTTTTATTATGTGACATTTATTGAAATTTAATTATAATACACTGTTAGAAATAT TTTATTATCTAAAAAAGTAAATTGGATTATAATGTTAATTATTTTACTATCAAAAAGATCAGTAT TTTGTGATAGTTTTAACCTAAAAACATTTCTGAAGATCGTTTTTTGTGAGAAAAAATTATTTTAA TATGTGTCATTTAAAGCAACTTTTAAAAAATTGCGGTTTAGAAATGTTCAGCTATCAAAAAAAAG TACATTGGATTTTGGTGCCAGTCAATTTATCAACAGAAAAAGTGGTCCTAAAATAATTTCCAAAC TTATTAATGGTGGTAGCATTAAAAAACACTTTTTTTTGGATTTTT Found at i:523135 original size:10 final size:11 Alignment explanation
Indices: 523113--523136 Score: 34 Period size: 10 Copynumber: 2.3 Consensus size: 11 523103 AAATGTTTTA * 523113 TTATGTGACAT 1 TTATGTGAAAT 523124 TTAT-TGAAAT 1 TTATGTGAAAT 523134 TTA 1 TTA 523137 ATTATAATAC Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 10 8 0.67 11 4 0.33 ACGTcount: A:0.33, C:0.04, G:0.12, T:0.50 Consensus pattern (11 bp): TTATGTGAAAT Left flanking sequence: Indices 522613 -- 523112 TACCTTTTGTTGATCATCACGTGCCTGGCGATCACAACACTGTTCAACCGGAATATCTGAAGATG TTCCACCAAATGGATCGTTTTTCTCAGGACGGAAGAATACTAATTTGCAAAAAGTCTGTTCTGTT CTAAAAGTTCTGAATCTTCTGAAAAAATTTCAGACTTAGATCCTGTCATTACATGGGCAAGCAGT GGAGTCGGAGATTTTTTATCAAAATATATGGATAGGTAATCAGGGAGAGACTGGCTCCTTTGTTA CAATATATTAGGTTTTGTTCTTTAAAATGTTCAAATGAAGCTGAAGAGTTCCGGCTAAAAGTATA TGATTTTTCAATGATTTTTCAAAAATTTCAAGGTATAACTCTGAAACTAAAATTTAAAAAAGAAA CTAAATTGGATTTTAATGTTAGTTAGTTTATTAACAGAAAGAGCAGTATTTTTTGATAATTGTAA CCTGAAAACTCTATTTTTCTAGTTTCGTGAAGTAAAAATGTTTTA Right flanking sequence: Indices 523137 -- 523636 ATTATAATACACTGTTAGAAATATTTTATTATCTAAAAAAGTAAATTGGATTATAATGTTAATTA TTTTACTATCAAAAAGATCAGTATTTTGTGATAGTTTTAACCTAAAAACATTTCTGAAGATCGTT TTTTGTGAGAAAAAATTATTTTAATATGTGTCATTTAAAGCAACTTTTAAAAAATTGCGGTTTAG AAATGTTCAGCTATCAAAAAAAAGTACATTGGATTTTGGTGCCAGTCAATTTATCAACAGAAAAA GTGGTCCTAAAATAATTTCCAAACTTATTAATGGTGGTAGCATTAAAAAACACTTTTTTTTGGAT TTTTTGAAATGAATAGTGTATTTACAGAGACAATGGTAGATCAACCTAAAAGAACAAAAAATTTG CAATTTTTCCAGGTAGGACACTTTTTTGCTACTCGAATATAACTAACCTAAAATAATTTCCAAAA GTTTCAATGGTGGTAGCACAAAAAAAAACAATTTTTTTGATTTTT Found at i:526875 original size:11 final size:11 Alignment explanation
Indices: 526849--526884 Score: 37 Period size: 11 Copynumber: 3.3 Consensus size: 11 526839 TCGGGGAACT * 526849 GTAGTGGTACA 1 GTAGCGGTACA * * 526860 ATAGCGGTACG 1 GTAGCGGTACA * * 526871 GTAGCAGTACT 1 GTAGCGGTACA 526882 GTA 1 GTA 526885 AGATTATGGT Statistics Matches: 19, Mismatches: 6, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 11 19 1.00 ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25 Consensus pattern (11 bp): GTAGCGGTACA Left flanking sequence: Indices 526349 -- 526848 ATCGTGATGGTGATGATGTGGCGGATTGTGATAGATCGTGTTTTTTATCCGGCGATTACTGCGAG AATTGTCTGAAAGAGTGGCAGGGCCTGGCGCCTGTCTTTCGGCTCTTTTCAGCATTTTGACGTGA ATTTCCAAATTTCTAATTTTCTCATTTCTATAAATTTGCTGAAAATCAATCAAAGAAATAAAAAA AAAGTTCACTCATGTTTTAGCATACGGCGCGAGAGGCAGGCGGAAATCGCCTTAAGGTCAGGCAG GCAGGCAGGCGTTTAACGCCTACATGGAAGCCCTATAGCACACATCTATCTGAAACTGGGAATGT TGTTCCGAAGTGCATTGGAGTGCCTGAAATTATACAATGTTTGTTCTAATTTATCATTTACTGTA TATAAAGCGCTTATTCCGTGTGTCCATAGTTGGTAGTCTATGTAGTCTGAAGTTTTGGCTTCTGG AAGGATAGTGAGTTGGGGTTAGTGTAGGGATATGGTCGGGGAACT Right flanking sequence: Indices 526885 -- 527384 AGATTATGGTACTTTCAGAAAAAAAAGTTTTCAGCCCCAGAAGTCGGGGTCCGTGCCGGAGGAGC GGACAACGGCTGGTTATCAATAAAGAATACCAACATTTTATCACAGATCCGGTTACCGCTAGACA AGAAGGTAAAAATTCGCATTCTGAGAAGGACTACTGTAGCAGGTGTTTAGCGTGTGTCCGAGTAG ATGTGGCGACTCTTAATTTAAGTTGTAGTTTCCTGGTGTCCCCTAATCGCGAACTTCACGATAAT TGTAAATATTTTAGTGTGGCCTATGTTTACAGGTTTTACGGACAGCCTAGCCCGAGAAAAACTCT GGAAAAAAATCCCAAAGCTCTTATCCAAAACTACCAAAGTATTCTATGCAATTCCCTTTTTGCAT TTCCTCACCCCGCCTAATAAGGCATGTTGTTTACCGCCGACTTTCCGCAATAATCTATTCTCGCA ATCATGTGATTTACCTGACGAATCGAAAGTATACGGTAACCTTCA Found at i:528745 original size:42 final size:42 Alignment explanation
Indices: 528692--528830 Score: 215 Period size: 42 Copynumber: 3.3 Consensus size: 42 528682 CAACCAAGAT * ** * 528692 TTTCGGCAACCGGCATTTGCCGAAGTTGCGGAACCCAAAACA 1 TTTCGGCAACCGGCATTTGCCGAAGTTGCCGAATTCAAAAAA * * * 528734 TTTTGGTAACCGGCAATTGCCGAAGTTGCCGAATTCAAAAAA 1 TTTCGGCAACCGGCATTTGCCGAAGTTGCCGAATTCAAAAAA * 528776 TTTCGGCAACCGGCATTTGCCGAAGTTTCCGAATTCAAAAAA 1 TTTCGGCAACCGGCATTTGCCGAAGTTGCCGAATTCAAAAAA * 528818 TTTCGGTAACCGG 1 TTTCGGCAACCGG 528831 TTGCCGCACA Statistics Matches: 85, Mismatches: 12, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 42 85 1.00 ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24 Consensus pattern (42 bp): TTTCGGCAACCGGCATTTGCCGAAGTTGCCGAATTCAAAAAA Left flanking sequence: Indices 528192 -- 528691 TGGATCGTCGTTTGTTGATGATGCCTCCTGCCTGCCATTGTTATTCGATATTCCGATATTCGATT CTTTTTTGCCGCCGCCGCCCAAGAGGAGAGGAGAATCAGAGAAGCTTGCGCGCTCCCTATCAAAA AAAAAAGATTATCAAATTTGAAGCAGCAGAAGCTGGGAAATGGAAATAATAGCGGATAAACAAAG AGAGCGAAATGTTTTGGGCAATAAATTTGTAGTTTGATGATAAGAGTGGCATTTTGATATGAGGA AGCTTGCAGAATCTAGTGGTGAACAGGAAGCTTTCGCTATGGAGCAAAATGGATTCCGTCATTTT TCTTAAAGAATCGGAGTCGAGATGAAACACCCAGCCGGAGCTGAAAAATTATTCTGCTGAAAAAT CGAGGTGCTTGAAGTACCAGGGCGTTATACAAAAGATCCAGGGATCCTAGTTCTGCAAAAAAAAT TTCTGCATAATGAAATGGAGAACAGGGCGGTGCGGCAACCAAGAT Right flanking sequence: Indices 528831 -- 529330 TTGCCGCACAGCTCTGATGGAGAACCCGGTGGTCAGCTCAGAGTTTGGATCACCACAACCCAGAA ATACCATCTTTCAGTGCCTCATACGTAGAAACACTCTAGCTCAAAGTGCCCCTGAGGCCCTGGGA TCTATCCTTACCTGGAAAACTGTGTAAAATTTCGAATATTCACAGATCCTAGGTTCGTAGTTTCA CAAAATGTTCCCACTCTGCCTTCGGATCCCCAGGACGCATTGCTACAATATTTTGCACTTGGTAC AGTACTCAGCTTTCCCTTTTTGCACCAAAAAACATTATTGATCCTTACGATTAGCGTCCTAGATA GGCTACAAGGCCATCGAGATCTCAAATATGCAAATTCTTAGGAAAGAAAGTGATGTTTCATCATC TTCTTGGATTAAAAATTTCCGAGGAAAAACATGGCAAAAATCAGGTTGATCGTGAAACTCGTCGG GGGCTCCTCTCACTTCTTCCCCATCTTCATCTCTCCTTCTCTTTC Found at i:529365 original size:12 final size:12 Alignment explanation
Indices: 529350--529391 Score: 47 Period size: 12 Copynumber: 3.6 Consensus size: 12 529340 TCTTTTTTCC 529350 TTTCTTCCATTT 1 TTTCTTCCATTT * 529362 TTTC-T-CGTTT 1 TTTCTTCCATTT * 529372 TTCCTTTCCATTT 1 TTTC-TTCCATTT 529385 TTTCTTC 1 TTTCTTC 529392 TCCTTCTTGT Statistics Matches: 23, Mismatches: 4, Indels: 6 0.70 0.12 0.18 Matches are distributed among these distances: 10 7 0.30 11 1 0.04 12 8 0.35 13 7 0.30 ACGTcount: A:0.05, C:0.26, G:0.02, T:0.67 Consensus pattern (12 bp): TTTCTTCCATTT Left flanking sequence: Indices 528850 -- 529349 GAGAACCCGGTGGTCAGCTCAGAGTTTGGATCACCACAACCCAGAAATACCATCTTTCAGTGCCT CATACGTAGAAACACTCTAGCTCAAAGTGCCCCTGAGGCCCTGGGATCTATCCTTACCTGGAAAA CTGTGTAAAATTTCGAATATTCACAGATCCTAGGTTCGTAGTTTCACAAAATGTTCCCACTCTGC CTTCGGATCCCCAGGACGCATTGCTACAATATTTTGCACTTGGTACAGTACTCAGCTTTCCCTTT TTGCACCAAAAAACATTATTGATCCTTACGATTAGCGTCCTAGATAGGCTACAAGGCCATCGAGA TCTCAAATATGCAAATTCTTAGGAAAGAAAGTGATGTTTCATCATCTTCTTGGATTAAAAATTTC CGAGGAAAAACATGGCAAAAATCAGGTTGATCGTGAAACTCGTCGGGGGCTCCTCTCACTTCTTC CCCATCTTCATCTCTCCTTCTCTTTCCCGATCCGATCTTTTTTCC Right flanking sequence: Indices 529392 -- 529891 TCCTTCTTGTGTTTGATTATCCATCCTCCTTGCCCTTTCTCCTTGTTTCATTTTTCTTTATTCAT TCGGATGGAATAGAGATATGGTTCCGTAAATTCATTCCAATACTAGAAGAATTAGTAAGACATTC GTAGGGGGGAAAATTCCGCGCAGAAAGCGACAGGAGGTTCGGGATTGGGTAATCGTCGGAAAAAT GAAAAATCGCGCGCGCCCGCCCGCGCAGATGGGATATATACTAAATCACATGGGCAGCGACATGA TATACGATGGATTGCGTGATCGATAGGCTTTTCAAGGAGGTACATTAGCACTGGTGGGCGTCGGG ATCCTTGAAGGAACAACGATCTTTGAAGGAGATGACGAGGATGTTGTGAAATTTAATTGTGATAT CATTCTATTATGTAATCCCTGGCCTAGAATATACATCATCTTTTAGAATTCTGGTCGGCTAGATG TTTTCGGGAAGTGCTTCTAAAGGATCGGCGCTGCCATGTATGTAG Found at i:534192 original size:12 final size:12 Alignment explanation
Indices: 534171--534197 Score: 47 Period size: 12 Copynumber: 2.2 Consensus size: 12 534161 TTTCGACCAA 534171 TTTCAGCAGAAT 1 TTTCAGCAGAAT * 534183 TTTTAGCAGAAT 1 TTTCAGCAGAAT 534195 TTT 1 TTT 534198 ACAAATTTTT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44 Consensus pattern (12 bp): TTTCAGCAGAAT Left flanking sequence: Indices 533671 -- 534170 CTGTCATATCTGGGGTAGATTTACGGCGCGTTGCGGTTCGATTTTAGTTGTAAAACTAAATGTAT TTGTCCGTGTGGAGTACACGACTTTCTCACGCGTGGTCCGGCAGGCGATTATCAATAGAGCGCGA AAAATTCAATGAGGAAGGCCAGAACTCCGTGCAGCTTTACTCGCGAATTCAGGTGTGTGTTTTAA TTGTCTTTATTCAGTTTTCTGATAATGAATATACTTTTTTACAGAAAAACTGGAAAACTGATAAA AAAGTCCCCAGAAACTAGATATTGAAATTACAGTACACTTTAAAGGCGCACACATTTTCACAGTA AACAAAAAATTTGTCGTGCCGAGATATTTCATCCAGATTATCAGTTGTTAAAATTTGACAACACT CATTTTGAATATTTAATGAATTCGAATGGAAAATAGAAGAAAGCTGCCAAAAAGTGAAATTAAAT TCTCAAAAACTTGATTTCCAGACTTTTTTGGCGATTTTCGACCAA Right flanking sequence: Indices 534198 -- 534697 ACAAATTTTTTTATTTTAAAGCTTATTTTAATAATTTTTCTCTGAAATATATGAATATCTTTGCT TTCGATGGATCTTCCTCAAAAGTAGACACACATTTTTATTTTTCTACAAAACTGTGCAAAGTTAC GTCGTGGTGTTTGCGTACCTCGGCGGGAATTTAAAGAGAAATGGCATTTTTCACTTTTCTCGCAG TTTTTCTGATTTTTTTTTCGTTTTTTCGTAGTTTCCTAATAAAAAATCGTTCCAATTGTTTCCAG GTAATGGCTGGATTTGAAATTCAAAGAGTCGAGTCCAAATTCTTCGACTTGGACGACATAATCGC CAAGTCAGACTCCACGTCTTGCACATTTGAGATTGGAGATTTGAATCCAGGTCTGAAATCGCATC GAAAACCTAAAAATTCTAGTGATTTTTGTTCAGATTTCTTCCAGGAAATGCTGGGAGTTTCGAAG CCAACTCAAAATGCAGACGGATACGGCGTTGATGCTCCATACTGG Found at i:535576 original size:12 final size:11 Alignment explanation
Indices: 535551--535577 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 535541 TTTTTTGCTT * 535551 TTTTGGCTTAA 1 TTTTGGCTCAA 535562 TTTTGGCTCAGA 1 TTTTGGCTCA-A 535574 TTTT 1 TTTT 535578 CCTCAAAAAC Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 11 9 0.64 12 5 0.36 ACGTcount: A:0.15, C:0.11, G:0.19, T:0.56 Consensus pattern (11 bp): TTTTGGCTCAA Left flanking sequence: Indices 535051 -- 535550 ACCCATCTGCAAAGCAAAGGCGAGAAATTTGACAGCCTCGAGACAAAAGTGTTCCTGGAGGGTAA ACGGTGCAAAGAAGACATTGATACTTGGCTGAGACAAGACAATAAGTGCTCGAGCAAGAAGCGTA AGAGACTTTCGTTATAAACTTCAAATTTCTTATGCTTGAATCTAATTTTATTTTTTTTAATTCGT CTGTAAATATAATTCAAACCCACCATTCTGTAATAATATTTTATTTTCTATTTTTTCACACTCAT TTTTGTGTTTTATTGGTGTAATAAACCTGGTTTCATGACTTTTTTGCAAGGAATTTTGTTGAAAA GGCTGCTGCAAAAACTTTGCCAGCAAAAAATTTTGTGCAAGCACGCTCCATCGCACAGTTTGAAC GTCGCGGGTCGAAGTTAGATGTGCAGGTCATATAGCAAAAAGAGAAACACCCCTTTTTTTCTCGA GAAGTTTCACCAATTTTGCGCGATTTTTCAACTATTTTTTTGCTT Right flanking sequence: Indices 535578 -- 536077 CCTCAAAAACATGAAAATCCAATCTAGAATAAGTAGTAATGGGTATATTCTAAGATTGTGCAAAA GTTAGCTTGAATTTCCTCGATTAAAGCTTTCCTACCAAGAAAAATGTGTGGATATTTTGAATTTA CAAGTTTTTCATCTTTTTTTTGTAATATTCTCTTTGAAACTCCTGTTTCTCTCAAATTTGTAAAC TTTCATAAACGTTTTTTTCAGGGTTACCACATTAAACAATGACCGGAAGCACCGAAACTCGCCAG AAGGAAGTCAAGGAGGTTGGTTGTTCAAAGTGACGTCTAAAATATTTAAATTTCTATATTTCAGC CACAAGTTGACGTTTCGGATGATTCCGACAACGAGGCCGTCGAGCAAGAGCTCACCGAGGAGCAA AGACGTGTGGCCGAGGCTGCTGGACTTGGAGATCACATCGACAAGCAGGCCAAGCAAAGCCGCTC CGAGAAGAAGGCCCGCAAGCTCTTCTCCAAGCTCGGACTCAAGCA Found at i:540432 original size:11 final size:11 Alignment explanation
Indices: 540407--540434 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 11 540397 TTTTTTTAAT * 540407 TGAAAATCAGT 1 TGAAAATCAGA ** 540418 TGAAAATTGGA 1 TGAAAATCAGA 540429 TGAAAA 1 TGAAAA 540435 ATTGCGAAAT Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.50, C:0.04, G:0.21, T:0.25 Consensus pattern (11 bp): TGAAAATCAGA Left flanking sequence: Indices 539907 -- 540406 CCAAGAACCGGAAAACCCGTCGGCCCGCTCGGCGTCGTCGGTGTTCAAATGGCCATGGAGAAGAG TTTCCGGTGGAAAATTGCACAATTCAGATATTTATGCTTGGTAAGGGAGGGCGAGAAATTCTTTG ATTTTAGCTATAAATTGATGTAAATTTCAGTCAAACAGTGTGCCTAATCATGTCAAAATCACAGT ATCCCGTAATAACGTGTTCGAAGACTCATTCCAAGAAATTATGCGTAAAAATGCAGTCGATCTAC GCCGGCGGCTGTACATTCAATTCCGAGGCGAAGAGGGTCTCGACTATGGAGGTGTCGCCAGAGAA TGGTTCTTCCTGCTGTCGCACGAAGTGTTGAATCCAATGTATTGCCTATTCATGTATGCTGGTAA TAACAATTATAGTCTTCAAATCAATCCAGCTTCATTTGTTAACCCGGATCATCTTAAGTATTTCG AGTATATTGGACGATTCATTGCCATGGTGAGTGTTTTTTTTTAAT Right flanking sequence: Indices 540435 -- 540934 ATTGCGAAATCGAGAGAAAATCGAGTTTTCCGCTTTTTACAATTGAATTTTAAAATTTTAAACGT TAAATTTTGCAGAAAATTCCAAAAAAAAGCACTTGGATCTAAAATTTTTGTTTTTTGATGAAGGA AATCCTTAAATATCGATTTTTTTTATTTTCAGCTCAAAAAACCTGGAAATTTCGATGATCTCAAA TTTTCAGATCAATATATTTCATTTTCTCCTAAAAATGTTATTTTTATTTAAACAAATAGTTTTTC TTAGAAAATTCCTTTATTTTCAAATTTCCAGGCGCTATTCCACGGGAAATTCATCTACAGCGGTT TCACGATGCCATTCTACAAAAAGATGCTCAACAAGAAGATTGTTTTAAAGGACATTGAACAAGTC GATTCGGAAATTTATAATTCATTGATGTGGATCAAGGATAACAATATCGATGAATGCGATATGGA GCTCTATTTTGTTGCCGATTACGAGCTGCTCGGCGAGCTCAAGAC Found at