TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:6776997 original size:13 final size:12 Alignment explanation
Indices: 6776979--6777010 Score: 41 Period size: 12 Copynumber: 2.6 Consensus size: 12 6776969 AAAAATTGAA * 6776979 TATTTTCATGATG 1 TATTTTCA-AATG * 6776992 TATTTTTAAATG 1 TATTTTCAAATG 6777004 TATTTTC 1 TATTTTC 6777011 CAGAAAACTG Statistics Matches: 16, Mismatches: 3, Indels: 1 0.80 0.15 0.05 Matches are distributed among these distances: 12 9 0.56 13 7 0.44 ACGTcount: A:0.25, C:0.06, G:0.09, T:0.59 Consensus pattern (12 bp): TATTTTCAAATG Left flanking sequence: Indices 6776479 -- 6776978 GTAATATTTCAAACTTGTAAAGTTTAGAATCTTGTCAGTGTAATATTGCTTCAAAATTCAAAGAG TTATTAGTAATCAGTGATAAATAAGAAAACAGGTGACAACAAGTGATGAGAGGATGACAATTAGA GAAATAGTGTAAGGATTATTGTGGATTAGAGATAAGCGGGAGCCTTCGCTTGACAGAGCAACAGA CGAAACAGTAGTTGTTGTAATATGAGAATTTGTTTTCTAGTCGAATGGGAAAGTATTATTAGTTC GAAAAAGTACAGTATTCTTTTAGAAATGCAATCATTTTTCCTAAAAATTTTAATTCTAATAAATA CGATTCTACCACCGCAATCGTAGTAATTTTCTATGCAGGGTTAGATACAAAATTTAAAGGCTAAA AAACCTTGATTTGTTTCACAGGAGTATAATTTTATAAATTTAATTTTCTGAATAAAAAATAATTG AACTTAGTGTATAATTTTCAAATTTTTCATTCTACAAAAATTGAA Right flanking sequence: Indices 6777011 -- 6777510 CAGAAAACTGTAATTTCCAAACAAAATTCGTTTTGAAAAAACTGTAGAAAATTCAAAAATCAACT GAATTTTTAGATGACTAACAAAAAGGTAAAGAAATTCGAGTGATGATCTCAAGTTCTAAGAAGAA ATGAAATTGGAAAAACAAAAAGTGAGTGGGAGTGTAGGGACCTCGGCGGCTCCCGCGAGTAGAAG CATCAGCTCATTGTGCTCATCATCGACTGGCATCTGATAGAAATAGAGAGAAAGAGATTTTAGAG CGAAGAAGCTTCTTCTTCTCTGTTACACATTCTGCCGCCCGCCCCCTCATGGCAGCCATGAAGAC GCGGGCATTTTCAACCAACAATCGTGTGCCTAGAATCTCCAGGATATCTGTGATCTTTTGTTGAA TGGACTGAGAAAAACGGATACAGATTACGGTAGTTCTTCACACTTTTCCAACTGACTGACTGATC GAAGAGCGAAACTATTTGGAAAGGAGGACCCAGGATTCTTTTTTT Found at i:6780119 original size:25 final size:25 Alignment explanation
Indices: 6780091--6782091 Score: 3162 Period size: 25 Copynumber: 80.0 Consensus size: 25 6780081 CTTCAAATAT * * 6780091 AGTAAATAATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780116 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780141 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780166 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780191 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780216 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780241 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780266 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780291 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780316 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780341 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780366 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780391 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780416 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6780441 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6780466 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6780491 AGCAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780516 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780541 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780566 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780591 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6780616 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780641 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780666 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780691 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780716 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780741 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6780766 AGTAAAATAATCGGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * ** * 6780791 AGTAAAATATAGTGGGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6780816 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6780841 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780866 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780891 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780916 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6780941 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780966 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6780991 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781016 AGTAAATTATTTTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781041 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781066 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781091 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781116 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781141 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781166 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781191 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781216 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6781241 AGTAAAATAATCGGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * ** * 6781266 AGTAAAATATAGTGGGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781291 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781316 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781341 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781366 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781391 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781416 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6781441 AGTAAAATAATCGGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781466 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781491 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781516 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781541 AGTAAATTATTATGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781566 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6781591 AGTAAAATAATCGGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781616 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781641 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * ** * 6781666 AGTAAAATATAGTGGGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781691 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781716 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781741 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * * 6781766 AGTAAAATAATCGGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781791 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781816 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * ** * 6781841 AGTAAAATATAGTGGGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * 6781866 AGTAAATTATTCTGTGAAGCCAGAA 1 AGTAAATTATTCTGTGAAGCCAGAG * ** * 6781891 AGTAAAATATAGTGGGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781916 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781941 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6781966 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG * * 6781991 AGTAAAATATACTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6782016 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6782041 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6782066 AGTAAATTATTCTGTGAAGCCAGAG 1 AGTAAATTATTCTGTGAAGCCAGAG 6782091 A 1 A 6782092 ATACTTTTTT Statistics Matches: 1770, Mismatches: 206, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 25 1770 1.00 ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23 Consensus pattern (25 bp): AGTAAATTATTCTGTGAAGCCAGAG Left flanking sequence: Indices 6779591 -- 6780090 AAAGGGTCAGTGGATTCCGCTGGAATCATCGTGTACAAACCAACCTCGATGATGAAGGCAGATTA AGCTGACTCTCTACGGTAAGGCTGTCTAGGGTCGGTCTCGTTTGATCCCATTGCGGGGTAGAGGC CTAGTCCGTGAGGAAAAAAGGCGGGTAACTCGATCAGGTGCCAGTAGATCTTCGGATCCGACGGC TCTGGTTAAGAGAAACCCTGTGATGGAGAAGACAGTTGGGCTGACAAAGGGGTAACCCGTCAGCG GACCATCACAGCAATCACGCAAACCAGTGATTATGCGGATGGACCAATCTGTTGGAGGGTGTTCC TCTTTGTTTGACCCGTCGAACAATTGGAATAAAAGCTTGCTGCTGGCTTTACAGCACATTCATAA TGGCCCCTCTTTTCTATAAACTCCCCAGCAACTGGTGGTCCCGTTAATTCGGGTTCTTGCCACTA TTGCGCCAGGCTCGCCGACACATTTCAGAAATATACTTCAAATAT Right flanking sequence: Indices 6782092 -- 6782591 ATACTTTTTTTGTGGTTTCAGATTTTTATAAGTTTATTGTACTTTTTAAAAAATACCTTGTGTGT TTTATGGTTGGTTTTACAAAGGCACATAAAAAACCAAAAGCACTGAAGATGTATTCAGTCAAACG AGCAAAAAGGTAAAACAATTTTTGTCAATAAAAGACCAAAAAAACATTTTTGAATCAAGAGAGCA ATGAGTCGGCGATGGAGGAAATTTGTGGTTCGGTGTGTGTTTTTTGTAGACATGAGGGAGAGGAT GCAACAAAGAGAACGAGATAAATCATTTGGGCACTGTATGAGAAAAGGAGGCTTCATATAATTTA ACAATGTTACTCTGTTCGAGAAGAAAATGGTAAGGGAAGTGTCTGTATCTTGAGATAAAGAATAA ATAATTCTCAACTTCAAAGACAGTCTAGGCATCAGATAGTAATAGTTTAATACAAACAAAACACT TTTCAGTGTTACTCAAATAAAGTAATCTCTATGAAGCAATGATGG Found at i:6784293 original size:12 final size:11 Alignment explanation
Indices: 6784278--6784309 Score: 34 Period size: 11 Copynumber: 2.8 Consensus size: 11 6784268 TCAAGCCAAG 6784278 CTTGTACCAACT 1 CTTG-ACCAACT * 6784290 CTTGCCCAACT 1 CTTGACCAACT * * 6784301 TTTGCCCAA 1 CTTGACCAA 6784310 GTAAGCAAGC Statistics Matches: 18, Mismatches: 2, Indels: 1 0.86 0.10 0.05 Matches are distributed among these distances: 11 14 0.78 12 4 0.22 ACGTcount: A:0.22, C:0.38, G:0.09, T:0.31 Consensus pattern (11 bp): CTTGACCAACT Left flanking sequence: Indices 6783778 -- 6784277 CCCACAGTGCAAACTACTAATTTGACGTTTTATACAGCTGGTGTGGTTTTCATAACAAAATGTAC ACTAGACTGGTATTATTATTTAATACCCGGGTATTCCTGGTGCTAAAAAAAAGAAGTTCGGTGAG TAGGTTGAATTTTTTCAATAGAAGTTTATCTTGGAGGGACGGGCTCTGAAACTCTCCACAATCGA AAAATGAAAGAATGGTCGTTAAATCGTATCTTACACTGCCATGTGTCTGATTGTGTACTCCTCGA GGATTTGTGTACTCCTCGAGGAAAAGGATTTTACTGTTTTTTTATTTAAACATTCGTGCATTCAA CTTTCGAATCTCTATTTTGTCTTGTATTCAAAGTGACTTATCTCAGTGTCAGAATCTTGCCCAAG TTTGGTCCAAGAAATATTAACTTGGATCATGTTTACTAAACTTGACAAAAGTGGAAAGTGACAAA AGTGACAGTATACTTGATTTATGCTTTGCCAAAGTTCAAGCCAAG Right flanking sequence: Indices 6784310 -- 6784809 GTAAGCAAGCTTCTTATCCAAGTTGATATTTTTTGAGCCAAACTTGGGCAAGAGGTTTGTTCAAA TGCAGAGATAAGTGCAAATCAATGTAATAAATATTGGAGACTACTCGGAACAAAACTTTGTAGTT TTTCTCCTCGGGGAGTACATGAGCTATGTAAATCCACACATCGTTTCTTCCATTTTCAAACACAA AAGTATCTTATTCTTGTTATCAAAACAGTCTTACCTTAATTGGTACTTCTTTTTTGAGAATTGGC ATCTGTGGCATCGGTGGTAAATCATCGTCAATTTGTGTGCTATTATTTTGAGTTTCCAATGATGA GATAGATGTTTGTGTGCATATTGACTCGTACATCATCTAAATAATGATAAAACTGTTTTTCTTAC TGTATAACATATGTGGTTAGTCTTACAACTCGTCGTTTATGGTTTTTTGATATATGATATTCAAG ATCTGTTGTTTTTTGAAACCGTTTCTCACACCCGTCGTAGTGGCA Found at i:6784298 original size:11 final size:11 Alignment explanation
Indices: 6784284--6784309 Score: 45 Period size: 11 Copynumber: 2.4 Consensus size: 11 6784274 CAAGCTTGTA 6784284 CCAACTCTTGC 1 CCAACTCTTGC * 6784295 CCAACTTTTGC 1 CCAACTCTTGC 6784306 CCAA 1 CCAA 6784310 GTAAGCAAGC Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.23, C:0.42, G:0.08, T:0.27 Consensus pattern (11 bp): CCAACTCTTGC Left flanking sequence: Indices 6783784 -- 6784283 GTGCAAACTACTAATTTGACGTTTTATACAGCTGGTGTGGTTTTCATAACAAAATGTACACTAGA CTGGTATTATTATTTAATACCCGGGTATTCCTGGTGCTAAAAAAAAGAAGTTCGGTGAGTAGGTT GAATTTTTTCAATAGAAGTTTATCTTGGAGGGACGGGCTCTGAAACTCTCCACAATCGAAAAATG AAAGAATGGTCGTTAAATCGTATCTTACACTGCCATGTGTCTGATTGTGTACTCCTCGAGGATTT GTGTACTCCTCGAGGAAAAGGATTTTACTGTTTTTTTATTTAAACATTCGTGCATTCAACTTTCG AATCTCTATTTTGTCTTGTATTCAAAGTGACTTATCTCAGTGTCAGAATCTTGCCCAAGTTTGGT CCAAGAAATATTAACTTGGATCATGTTTACTAAACTTGACAAAAGTGGAAAGTGACAAAAGTGAC AGTATACTTGATTTATGCTTTGCCAAAGTTCAAGCCAAGCTTGTA Right flanking sequence: Indices 6784310 -- 6784809 GTAAGCAAGCTTCTTATCCAAGTTGATATTTTTTGAGCCAAACTTGGGCAAGAGGTTTGTTCAAA TGCAGAGATAAGTGCAAATCAATGTAATAAATATTGGAGACTACTCGGAACAAAACTTTGTAGTT TTTCTCCTCGGGGAGTACATGAGCTATGTAAATCCACACATCGTTTCTTCCATTTTCAAACACAA AAGTATCTTATTCTTGTTATCAAAACAGTCTTACCTTAATTGGTACTTCTTTTTTGAGAATTGGC ATCTGTGGCATCGGTGGTAAATCATCGTCAATTTGTGTGCTATTATTTTGAGTTTCCAATGATGA GATAGATGTTTGTGTGCATATTGACTCGTACATCATCTAAATAATGATAAAACTGTTTTTCTTAC TGTATAACATATGTGGTTAGTCTTACAACTCGTCGTTTATGGTTTTTTGATATATGATATTCAAG ATCTGTTGTTTTTTGAAACCGTTTCTCACACCCGTCGTAGTGGCA Found at i:6787574 original size:11 final size:11 Alignment explanation
Indices: 6787558--6787580 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 6787548 CTTTTCCGTT 6787558 TACCATTTTCA 1 TACCATTTTCA 6787569 TACCATTTTCA 1 TACCATTTTCA 6787580 T 1 T 6787581 CTGTTTTTTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48 Consensus pattern (11 bp): TACCATTTTCA Left flanking sequence: Indices 6787058 -- 6787557 GCATGTTTCTCATCTGACATCTCTTCAACTTTTAAATCTTGTTCATCGATTAACTTCGGAGAGAA TGATGATGTTGACTCAACGACAGCTGGAAAAATAAACCGTGTTTTTTCTTCAATAAATATTTTTT ATCAAGTTTTTATGAGTATATTTACTTTTCTTGGACTCTCTGTTAAAATTTCGAACATTCTTCTT ATATTGCGCTCATAATTTTTTTTTAAATGTTAATGAAGAGAGCTATTTGCAGTAGACTATCTAAG CAATTTAATTGTTAATTTTTAATTTTTAGTGCCTTCGCTTATCTATTTTGTTTTTAATAGCCTGA ATTTCCATTTCCCTAGAGGATCTCTCGAAAGTTTTGAAATTATTTGAGCAGCTACGGTAGATGCG ACTTTCGTGCATTTACGCGTGGCGGTGTTCACACTGATCCCAAAAATTTTTGTTTGAAATAAATT GCTTTTTTTTCGCAATCTTTCATTCTTATTCATTGCTTTTCCGTT Right flanking sequence: Indices 6787581 -- 6788080 CTGTTTTTTCCACTTTTAAAAATTCTTCTCGCATTTTATCAGTAGGCTCGGATATTTGTTCGTCT TTGACAAGATCTTCTGGTTTTTCATCAATTTCTAGTTGTATTTCTTCATCAATTTCCATTGGTTC AATATCATCATTCTCATCATCCTCATCTAACTCGCCGTCTTCTTTTCCAGAAGTTTCCGCTTGAT CGTGAGCTAAATGCAATAATTTTCAAGATTTACGAGAAATATTTTTTTTTTCTTAAAAAAAATTT CAAACGAAATTTCAAAAAATTATTTAGAAGTTTTTGTTAATCATTGAAACAAATAACGTACCGTC ATAAGTTGTTTGAAATTCGGGGGTTTCCTGCAACGGTGGAGGAAGAGGTGGGGGCGCTGAAATCG ATGGTTTGTCTTCCGAATCGGACGGACTTTCATCGATCTGTAGACGACCCTCGTCCTCATCGTCT GACATGTTGCTGAAAATTTGAAAATTAAAATTTTACAAAAGATTT Found at i:6790465 original size:24 final size:24 Alignment explanation
Indices: 6790438--6790488 Score: 67 Period size: 24 Copynumber: 2.1 Consensus size: 24 6790428 AGAAGAAATT * * * * 6790438 GAGGATGATTTTGATGATGAAGAG 1 GAGGATGATGTTAACGATAAAGAG * 6790462 GAGGATGTTGTTAACGATAAAGAG 1 GAGGATGATGTTAACGATAAAGAG 6790486 GAG 1 GAG 6790489 TACGAAGAAA Statistics Matches: 22, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 24 22 1.00 ACGTcount: A:0.35, C:0.02, G:0.37, T:0.25 Consensus pattern (24 bp): GAGGATGATGTTAACGATAAAGAG Left flanking sequence: Indices 6789938 -- 6790437 GGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCTGGTTCAACTCCGGGTG CCCCCTAAATACTTTTTGCATTTTGGCTTCTGCTTAGAATCATGACGATCAAATAAGTTTCCTAA ATTTGAACAAAATTATATAGTGGTTCAATCTTGTTTGATAATTTATTAATTTTACAGGAAGGTCC AGCTGCAAAACGTCATTCGGGCGAGAAGCATCGAAATGGTAGCCGCGAAGATTCTTTGGAGTATA TTAGTGGTAATCTAGTTTTATTAGAGTAAAAATGATATTCTGTTTGAAGAATATTCAGATGATCG TGAAGTTGGATCTTCATCATCACAATCATCAAGAACCCGTGGACAACCACTTCCAGCTATGCCTG AGGAAGAAGAAGTGTTTGATAAATCATCTTCATCTGATAATCTTGCCGAATCTGAAGAAAGTCAT GAGATGGTCCGATTGGAAGAGAGACAGGATATTGAAGAAGAAATT Right flanking sequence: Indices 6790489 -- 6790988 TACGAAGAAATTGAATCTGAAGATGAAGATGGTTAGTTTCAAAAATACTCATGATGCGTTTGAAA TTATTAGCATTTTAGATCAAAATTTGATAAAAAATAGTGTCTCCAAAGAGAGTATCAGTGTTTCA AGCTGAAAAACCTACCCAATTTTGATACAATTTAGATTATCCTGTCCAAAACGAAGGATTTGCCG TTACAAAACGGCTCATGAACGACGAACATATGGTTACGGCTCCAACGTTTCTCAGCACAGCAAAA TGCGATGGAATAGGATCACCAACAAAAGTTTGGTCTCTTATGGTCAAACGAGACGAAATTCCACG TGCTACACGATTCTTGCTTGGAAATCATCCGGATATGGATGATGAAAAGCGACGTATTTTAATTG ATTGGATGATGGAAGTGTGTGAATCAGAAAAATTGCACCGAGAAACATTTCATTTGGCTGTTGAT TATGTTGATAGATATTTAGAGTCATCAAATGTTGAATGTTCAACG Found at i:6792843 original size:11 final size:11 Alignment explanation
Indices: 6792823--6792848 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 6792813 TATATTAAGT 6792823 GGTACGGTAGG 1 GGTACGGTAGG * 6792834 GGTACTGTAGG 1 GGTACGGTAGG * 6792845 TGTA 1 GGTA 6792849 TTGCAGAGTT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.19, C:0.08, G:0.46, T:0.27 Consensus pattern (11 bp): GGTACGGTAGG Left flanking sequence: Indices 6792323 -- 6792822 TTTACTCATCTCACTTCCCCTTCTTACTTTGTGCTTATTTTATGTTTTAGGTTTTTTTATTGTAT CATAAAACTGGAAATTTTGAAATAGGCTTCTTTCTCCCTAAACTTTTTTAACAGGTACTGTAACT GGTACATATCCTCTGCCCCACCCCGCTCCCAACTCGTCTTTGTCTGTTTGTTTATACGAAATACA ATTTTTAACGAGTATGCGGGTTTCTGTTAGCTTCAACAATACGATCATTCAAATTTTAAAATTAA GAAACTATAAAAGCACAGTATTTACGTGAGTTGAAACAAAATGCCTTCTCCAAATTTCTTAACAC TGAAAAATTTTCGGAAAAAAAGCAGAAATTACTCCGCAAAAAATTAAGGACATCATTCCAATATT TTTTTTTACTTATTTGATGAAAAATTAATATATTCCAATAAATTAAAATGAATTATCATCTCAGG AATACTGTAGAATTACTTTAAGATTTTGGCTTATTTATATTAAGT Right flanking sequence: Indices 6792849 -- 6793348 TTGCAGAGTTGTAGACACTGTAAATGAAATTCCAAAGAGCATAAAATTTATCAAAAAAAAGTTTG CGTGAATTTCTAATTAATGTTTAATCTTCTTTTTTTGTTAAAATTTGTTCAGGGTTTCTTATCAA AAAATGAATCATTATTTAGTTTCTTGGCTAAAACACTACTCATCTTCGTAGTTTCTTGCCGTGAT GTTTCAAGCTTTGTTAAGTAAGTTTGAGTGAATTTCTGGTTTTGGTGGAATTTATTCTGATATCG AAAGCTCTATGTCTATTCAATCAATTGATGAAAATGCGTAAATAGGGAACTATGCACACACGGCG GCTCAGACTGATGAAGCTTTTCTAGTTTTGGAGAATGAGGTCTAATTGAGCAAATTTTCAGCAAA ACTCAAAAATAATGCGGCTTTGGGAGCAGCTGCAAATAACTTGAACAAGTTCAGAAGTTCGAATC TTGGTAATCAGAGACGTTCTGTCTCAGTTGCTGTGACATCAACAT Found at i:6795514 original size:11 final size:11 Alignment explanation
Indices: 6795498--6795522 Score: 36 Period size: 11 Copynumber: 2.3 Consensus size: 11 6795488 TGTGAAACAG ** 6795498 TTTTTATTTAT 1 TTTTTAAGTAT 6795509 TTTTTAAGTAT 1 TTTTTAAGTAT 6795520 TTT 1 TTT 6795523 GAGATGTGCG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76 Consensus pattern (11 bp): TTTTTAAGTAT Left flanking sequence: Indices 6794998 -- 6795497 AGTGTTTGCAGGTAACAAATACAAAACTTTTCACAATTTCTAAATGATATTTTATAGGTGTGGGG AGGTGCAGGATATTTGAATGAAAATGGAATTTCGAGAGCTTTCCGAGATTTCCGTCTTTTCTCGA TCGGAGCCGGTTGCGATGAGGTCATGATGAGAATCATTCATAAGGCTCAGTCACGTAGACAACTG AAGAAGGCATAGGATTGATTTATTCCGTAGCTATTCTATTTTCCTTTCTGTAGTATTCTCGCAAT AAAATTTTTTATTGTGTGTTCAGTGATTTCAGAGATCTTATTAAAGTGAAAAAGCCATCAAGGTT GACGCATGCCTACGTTCTAACGTCTACCTCATACTTGCCTAGGTGCCTACCTCATGCCGTCTACG CCATACCTGCTTATATCTTTTCAAACCTACAGGAAGCTTAAAGCTCCCCCTGATGCCCTGACTAT CTAAATCCTTGCCTTATGATGCCTGCCTACTTTTATGTGAAACAG Right flanking sequence: Indices 6795523 -- 6796022 GAGATGTGCGTACTGTTTGGTTGTGAAAATTGCAAATTGTAATTGGTGAATTTTTATCTTGAAGA ATTGAATTGTATACGTTAATGATAGAACAACTATTGTACAAGATACTTAATCGCGTACTAAATAT AACATAAGTGTAGAAACGAAAATTTATGTCAAGTACAAACAGGTATGCGTCTTTAAGGAGTACTG TAGCTTTAAAACTTTCGTTAACGAGGAATTTCCATCGATTTTTCATAGTTTTTGTCACGACTTGT TAAGTAAAATGTATGTTTCTTTTTTAATTGTTAAAATGTTAGTTTTTTAATGAGTACATATGTTT TTTTTCAACGAAAAGCTATGAAAAATCGGTGAAAATTTGTACTTTAAAAGTACTTTAAAAAGCGC AAACCCGTTTGTATTTGACAATAATTGTCGTGTCGAGACCAGGTACCGTATTTTTGGCACAAAAT GGCAAAATTTTGCGTCTGAGCAATAGCAGTTAACAATTCCACGAG Found at i:6795851 original size:23 final size:22 Alignment explanation
Indices: 6795794--6795852 Score: 56 Period size: 23 Copynumber: 2.5 Consensus size: 22 6795784 AAGTAAAATG * * 6795794 TATGTTTCTTTTTTAATTGTTAA 1 TATGTTT-TTTTTTAATAGTAAA * * * 6795817 AATGTTAGTTTTTTAATGAGTACA 1 TATGTT-TTTTTTTAAT-AGTAAA 6795841 TATGTTTTTTTT 1 TATGTTTTTTTT 6795853 CAACGAAAAG Statistics Matches: 27, Mismatches: 7, Indels: 4 0.71 0.18 0.11 Matches are distributed among these distances: 23 19 0.70 24 8 0.30 ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61 Consensus pattern (22 bp): TATGTTTTTTTTTAATAGTAAA Left flanking sequence: Indices 6795294 -- 6795793 CTTATTAAAGTGAAAAAGCCATCAAGGTTGACGCATGCCTACGTTCTAACGTCTACCTCATACTT GCCTAGGTGCCTACCTCATGCCGTCTACGCCATACCTGCTTATATCTTTTCAAACCTACAGGAAG CTTAAAGCTCCCCCTGATGCCCTGACTATCTAAATCCTTGCCTTATGATGCCTGCCTACTTTTAT GTGAAACAGTTTTTATTTATTTTTTAAGTATTTTGAGATGTGCGTACTGTTTGGTTGTGAAAATT GCAAATTGTAATTGGTGAATTTTTATCTTGAAGAATTGAATTGTATACGTTAATGATAGAACAAC TATTGTACAAGATACTTAATCGCGTACTAAATATAACATAAGTGTAGAAACGAAAATTTATGTCA AGTACAAACAGGTATGCGTCTTTAAGGAGTACTGTAGCTTTAAAACTTTCGTTAACGAGGAATTT CCATCGATTTTTCATAGTTTTTGTCACGACTTGTTAAGTAAAATG Right flanking sequence: Indices 6795853 -- 6796352 CAACGAAAAGCTATGAAAAATCGGTGAAAATTTGTACTTTAAAAGTACTTTAAAAAGCGCAAACC CGTTTGTATTTGACAATAATTGTCGTGTCGAGACCAGGTACCGTATTTTTGGCACAAAATGGCAA AATTTTGCGTCTGAGCAATAGCAGTTAACAATTCCACGAGCCTAAATTCGAAAAATCCTTTCAAC TTCTATAGGAGTTTTTTTCAAAGTTCCGATGCATCCTTTGTCTGTAAGACTTTGGAGCTCCTAGA TTGTCCTGGAATGATTTTCTTTCCGTTAGAGGCCAGTTACAATAGTTTCTAGTAAAGTTCAACAA TTTTATTCCTGAAAGACTAATTCAGTTTAAATTTAACAGTTATTGGAATTTTAATTCAAATACTT TCGCAGTATTGAATCCGTAATGTTCCTTAATGACGTATCCTGGAAGTGAAAACTCGGCCAATTGA TTTTTGGTGAACTTCGTTTTGTATCTGTAAACCGAATTTATGAGG Found at i:6795900 original size:11 final size:11 Alignment explanation
Indices: 6795886--6795907 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 6795876 GTGAAAATTT 6795886 GTACTTTAAAA 1 GTACTTTAAAA 6795897 GTACTTTAAAA 1 GTACTTTAAAA 6795908 AGCGCAAACC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36 Consensus pattern (11 bp): GTACTTTAAAA Left flanking sequence: Indices 6795386 -- 6795885 CGCCATACCTGCTTATATCTTTTCAAACCTACAGGAAGCTTAAAGCTCCCCCTGATGCCCTGACT ATCTAAATCCTTGCCTTATGATGCCTGCCTACTTTTATGTGAAACAGTTTTTATTTATTTTTTAA GTATTTTGAGATGTGCGTACTGTTTGGTTGTGAAAATTGCAAATTGTAATTGGTGAATTTTTATC TTGAAGAATTGAATTGTATACGTTAATGATAGAACAACTATTGTACAAGATACTTAATCGCGTAC TAAATATAACATAAGTGTAGAAACGAAAATTTATGTCAAGTACAAACAGGTATGCGTCTTTAAGG AGTACTGTAGCTTTAAAACTTTCGTTAACGAGGAATTTCCATCGATTTTTCATAGTTTTTGTCAC GACTTGTTAAGTAAAATGTATGTTTCTTTTTTAATTGTTAAAATGTTAGTTTTTTAATGAGTACA TATGTTTTTTTTCAACGAAAAGCTATGAAAAATCGGTGAAAATTT Right flanking sequence: Indices 6795908 -- 6796407 AGCGCAAACCCGTTTGTATTTGACAATAATTGTCGTGTCGAGACCAGGTACCGTATTTTTGGCAC AAAATGGCAAAATTTTGCGTCTGAGCAATAGCAGTTAACAATTCCACGAGCCTAAATTCGAAAAA TCCTTTCAACTTCTATAGGAGTTTTTTTCAAAGTTCCGATGCATCCTTTGTCTGTAAGACTTTGG AGCTCCTAGATTGTCCTGGAATGATTTTCTTTCCGTTAGAGGCCAGTTACAATAGTTTCTAGTAA AGTTCAACAATTTTATTCCTGAAAGACTAATTCAGTTTAAATTTAACAGTTATTGGAATTTTAAT TCAAATACTTTCGCAGTATTGAATCCGTAATGTTCCTTAATGACGTATCCTGGAAGTGAAAACTC GGCCAATTGATTTTTGGTGAACTTCGTTTTGTATCTGTAAACCGAATTTATGAGGTTATGAGAAA CATTTTCTATTTGAAAATGAAATTGCAAAGTATTCACCGTTGCAA Found at i:6799126 original size:10 final size:11 Alignment explanation
Indices: 6799106--6799127 Score: 37 Period size: 10 Copynumber: 2.1 Consensus size: 11 6799096 CAATTGTTAT 6799106 ATTTGCAGAAA 1 ATTTGCAGAAA 6799117 ATTT-CAGAAA 1 ATTTGCAGAAA 6799127 A 1 A 6799128 AATAGTTGGC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 7 0.64 11 4 0.36 ACGTcount: A:0.50, C:0.09, G:0.14, T:0.27 Consensus pattern (11 bp): ATTTGCAGAAA Left flanking sequence: Indices 6798606 -- 6799105 AAATCGACCGCGACGCGGTGGTGCTGCGTCGCGGTCGCGTTACGACCGTGAGTGTCCGCCGTTCT TTCGGAACCGCCGAACTGCCATGCGCAAACTACGTCATCAGGATAGTTTCTGATTTTCAGATATT CCATTTTTGACTTTTGGGTGCAAGAAGAACAGCTTTTCGACGTCCCTATCGCATTTCTCTACCAA AACTCCGCCCCATTATTGATTTTCCTTGCACTTTTCCCTTCAGGCAATTCAAATTTCGCGCCGTA GAAAACTAAAATACTTATCAGTTTTGGCTTAAATTTCAAAAAACTTTTTACAGTAAAGGAGAAAC GAACTATTTATAATTCCCCAAGACTATATTTGTTAGAAAAATCTTCTTCGTTCAAAAGTTCTCTT AAGTAGATATCAAGTCGTTATAAATTGATTTTTATGCTATTTTGATTAAAATTCTCTGACTATGG TTTTTCGAATAATCTGATAATTGGTCCGACGAATTCAATTGTTAT Right flanking sequence: Indices 6799128 -- 6799627 AATAGTTGGCGCTGAATGGTCGTGTCGGTCGATGCGGGGAGCAGCGTCTGCCTCAGCACATACTT CTTCTGCGGCTTCCTCAACGTGGTCCACAATTCCTCACTCACGTACACCGCCGCTTCAATCTAGT AAGCTTTGATTTAAAAATTGCAAAATGCACGTTAAATTTTCAAAAAAATTTCCTGAAAAACGAAT TTTTGCTTTTTTTTGGATGAATTAATTTACTTCTCAAGATTAATTAGAATTTTTGAGATTTGCAA TCTTAGATGTCGTGTAATTATATCAGACTTGCCGCTCAGCCATTTTATAAATTTCCAGACATCGA AAAGGTGGGAGATATTGTGCGACCGTCTTCAGCGACCGCACTGCTCTCCTCTCTGTCCACCTCAT CGTCAGGCATCGGTGAGTCTCTTCGGAGTCCCAGTGCCGAGATATCAATGACTTCAGAAGCGAGT ACGTCTTGCGCAAGTACTCCAACAACTGCAAACACGTTGCCACCG Found at i:6800639 original size:11 final size:11 Alignment explanation
Indices: 6800620--6800643 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 6800610 AAAAAAAAAC * 6800620 AATATTACAAT 1 AATAATACAAT * 6800631 AATAATACAGT 1 AATAATACAAT 6800642 AA 1 AA 6800644 AATCTAACTG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29 Consensus pattern (11 bp): AATAATACAAT Left flanking sequence: Indices 6800120 -- 6800619 GAAAAATGTTTGCTAAATTGATTGTAAAAACATGAAACGTGCTCACAATCTCATGATCATTAAAT TGGATATAATTTTCGTTCGAAAAAAAGAATAAAACAAGTAAAATTGTAAATTTTGTGGAAAAAAA TCAGCAAAAAACGCTGGATAACGGACGAAAAAACCATTCCGGGGAGTTGCGAAATAATGCTCACC CCTCCTTATGTTGGACGCTGCTTTTTGCGGAATTGACGGATCGATAGTTCAGTTTTTACAATAGT AGCGTCCATAAAAAATGTGTTTAAAAAATGTGGTCCTGACGGCCGAAAATTGGAACGTTTTAAAA GTAGTTTTATTCGTTTCACGATGGTTTTTTTCCCAATAATGCACATGTTTTCTATAATCAGCAAA AAATTTTGTTTTAAGTAACGCAACACATTATTTGATCGAAGGATAATTTGTCTGGCGAATTTTGA AAGAGGAAACAGTATATTTTAAAGGAATTTATTTAAAAAAAAAAC Right flanking sequence: Indices 6800644 -- 6801143 AATCTAACTGAAAATATGAAGTCGGAATAAGCAAAGTAGTATTTAGGCTGAATCGATTTTTCATG CTCACTGAGCGATCGATCCGTGAATTTCGCAAAAAAGCAGAGCCCTACAGAAAGAAAGGTATAGG CTCTCCTTCTATGCGACGGTGTAATGCACTGATCGATATTCCAGTTTTGACAGTAGATTTCCATT AAATAACAGACGGTATCTTTATAAACAGGCAATCTTTTTTATTATTGATTTTCATTTTTCCTCAT CCTCTAGACATTCATTTATCAATCAAAGATAAACTTGCAACTCACTTTGATCTACTGGATTTTAT CCAAAGATCCACTCTCTTATACCACGAACCCGTCTCTCTGCCAGTTCTGTATGTTTTCTCTGCGC CACAATAGAAGACGTTCCTCGATCCCTATGCATTTCTATGTGTGTGTGTAATCGCGCTCTGCTGC CAATTCAAATAATTCTAATTTTCAGTTGGTTTACTGTTTTTATTT Found at i:6802388 original size:12 final size:12 Alignment explanation
Indices: 6802367--6802390 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 6802357 TGCGGCAATA 6802367 CAACAACAGCAG 1 CAACAACAGCAG * 6802379 CAACATCAGCAG 1 CAACAACAGCAG 6802391 GTTAGTACTA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.46, C:0.33, G:0.17, T:0.04 Consensus pattern (12 bp): CAACAACAGCAG Left flanking sequence: Indices 6801867 -- 6802366 TTATGGTTAAGCAAGAACCACCATCACAGTTTACACCTCAACCACATCCAATGCAACAGACACCA CAGCAGCAGGTACTGCCTCAATATCCACCCGGTATGCAACCACATCAAATGCATCAGATGCGTCA AATGACTGCAGAAGAATATGCACAAATGAGAGCACGAGAAGGATTCATGGCTGCCCAAATCAAAC AAGAAGTTCCTAGTGGTAGTGGTCAGCCAACTCCTGTTCCCGGAACACCACAACCACAACAGATC ACTCCACAGCCTGGTTCATTGGGGCCAATGGGATCATTGGGACCTCCAACTGCCCCACCTGGATC ACAACCTATGAATCCACAACAGCAAAGGATACAGCAACAACAACAGGCAGCTCCGTCGGCATCAA ATAGCCCACTTCTTGTTAACTTACTTTCCAATCAGCAGCCACCTCAGCAACAGTACATGTATCCG GGACCATCGGCTCAAGGGCTCAGTATGCAGCAGATTGCGGCAATA Right flanking sequence: Indices 6802391 -- 6802890 GTTAGTACTATTAGTTTATACGTTCATTCCAGTAAATGTTATAATTCTTATTCACAAAATACGTG AAAAATTACAGTACCAGCAACGAATCCTTCAACAGCAACAGCAACAAGCAATGATGCAACAGCAA CAACAACAAGTACAGCAGCAACAGCAGGCCCCACCACCAACTACTCCGAATCCGGGGCATCCTCA AGGATTCTTTCCGACGAATCAGGCAGGTCCGCCAGGAACTCCGGGACGCCCCATTCCTCCGTATG CAATGGGTCAACCACCTATGTATCATCAAGCTGGACCACAAGGACAGATGATTCAACGGATGAAT TCTTATCCTGGTAATGCACAGCAGTTTCGTCCGCCTCCACAGCAGTCACAACAACCGATACCACC GCAGCAGCAGCAGCAACCACCTGCGCCTCCTCAACAACTTCAACAACCACCTGTACAGGATACTT CTGCCGTTGCGGAGCCACCAAAAAAGAAGAAGCGACCCACGAAAA Found at i:6802539 original size:21 final size:24 Alignment explanation
Indices: 6802487--6802543 Score: 65 Period size: 24 Copynumber: 2.5 Consensus size: 24 6802477 GAATCCTTCA * * 6802487 ACAGCAACAGCAACAAGCAATGAT 1 ACAGCAGCAACAACAAGCAATGAT * * 6802511 GCAACAGCAACAACAA-CAA-G-T 1 ACAGCAGCAACAACAAGCAATGAT 6802532 ACAGCAGCAACA 1 ACAGCAGCAACA 6802544 GCAGGCCCCA Statistics Matches: 27, Mismatches: 6, Indels: 3 0.75 0.17 0.08 Matches are distributed among these distances: 21 11 0.41 22 1 0.04 23 3 0.11 24 12 0.44 ACGTcount: A:0.51, C:0.28, G:0.16, T:0.05 Consensus pattern (24 bp): ACAGCAGCAACAACAAGCAATGAT Left flanking sequence: Indices 6801987 -- 6802486 AGATGCGTCAAATGACTGCAGAAGAATATGCACAAATGAGAGCACGAGAAGGATTCATGGCTGCC CAAATCAAACAAGAAGTTCCTAGTGGTAGTGGTCAGCCAACTCCTGTTCCCGGAACACCACAACC ACAACAGATCACTCCACAGCCTGGTTCATTGGGGCCAATGGGATCATTGGGACCTCCAACTGCCC CACCTGGATCACAACCTATGAATCCACAACAGCAAAGGATACAGCAACAACAACAGGCAGCTCCG TCGGCATCAAATAGCCCACTTCTTGTTAACTTACTTTCCAATCAGCAGCCACCTCAGCAACAGTA CATGTATCCGGGACCATCGGCTCAAGGGCTCAGTATGCAGCAGATTGCGGCAATACAACAACAGC AGCAACATCAGCAGGTTAGTACTATTAGTTTATACGTTCATTCCAGTAAATGTTATAATTCTTAT TCACAAAATACGTGAAAAATTACAGTACCAGCAACGAATCCTTCA Right flanking sequence: Indices 6802544 -- 6803043 GCAGGCCCCACCACCAACTACTCCGAATCCGGGGCATCCTCAAGGATTCTTTCCGACGAATCAGG CAGGTCCGCCAGGAACTCCGGGACGCCCCATTCCTCCGTATGCAATGGGTCAACCACCTATGTAT CATCAAGCTGGACCACAAGGACAGATGATTCAACGGATGAATTCTTATCCTGGTAATGCACAGCA GTTTCGTCCGCCTCCACAGCAGTCACAACAACCGATACCACCGCAGCAGCAGCAGCAACCACCTG CGCCTCCTCAACAACTTCAACAACCACCTGTACAGGATACTTCTGCCGTTGCGGAGCCACCAAAA AAGAAGAAGCGACCCACGAAAAAGCAGAAGGAAGCTGCAGCTGCCGCTGCATTGGAGCAACAGCA ACAACAGCAGCAGCAACAAATGCAAGCATATTATGGACAGCAGCAACAACAGCAAGAAAGAATGC AAATGATGCAGCAACAGCAACAACAAGGGCAAATGGTGCAGCAAC Found at i:6802541 original size:27 final size:27 Alignment explanation
Indices: 6802485--6802546 Score: 82 Period size: 27 Copynumber: 2.3 Consensus size: 27 6802475 ACGAATCCTT * * * 6802485 CAACAGCAACAGCAACAAGCAATGATG 1 CAACAGCAACAACAACAAGCAAAGAAG * * * 6802512 CAACAGCAACAACAACAAGTACAGCAG 1 CAACAGCAACAACAACAAGCAAAGAAG 6802539 CAACAGCA 1 CAACAGCA 6802547 GGCCCCACCA Statistics Matches: 29, Mismatches: 6, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 27 29 1.00 ACGTcount: A:0.50, C:0.29, G:0.16, T:0.05 Consensus pattern (27 bp): CAACAGCAACAACAACAAGCAAAGAAG Left flanking sequence: Indices 6801985 -- 6802484 TCAGATGCGTCAAATGACTGCAGAAGAATATGCACAAATGAGAGCACGAGAAGGATTCATGGCTG CCCAAATCAAACAAGAAGTTCCTAGTGGTAGTGGTCAGCCAACTCCTGTTCCCGGAACACCACAA CCACAACAGATCACTCCACAGCCTGGTTCATTGGGGCCAATGGGATCATTGGGACCTCCAACTGC CCCACCTGGATCACAACCTATGAATCCACAACAGCAAAGGATACAGCAACAACAACAGGCAGCTC CGTCGGCATCAAATAGCCCACTTCTTGTTAACTTACTTTCCAATCAGCAGCCACCTCAGCAACAG TACATGTATCCGGGACCATCGGCTCAAGGGCTCAGTATGCAGCAGATTGCGGCAATACAACAACA GCAGCAACATCAGCAGGTTAGTACTATTAGTTTATACGTTCATTCCAGTAAATGTTATAATTCTT ATTCACAAAATACGTGAAAAATTACAGTACCAGCAACGAATCCTT Right flanking sequence: Indices 6802547 -- 6803046 GGCCCCACCACCAACTACTCCGAATCCGGGGCATCCTCAAGGATTCTTTCCGACGAATCAGGCAG GTCCGCCAGGAACTCCGGGACGCCCCATTCCTCCGTATGCAATGGGTCAACCACCTATGTATCAT CAAGCTGGACCACAAGGACAGATGATTCAACGGATGAATTCTTATCCTGGTAATGCACAGCAGTT TCGTCCGCCTCCACAGCAGTCACAACAACCGATACCACCGCAGCAGCAGCAGCAACCACCTGCGC CTCCTCAACAACTTCAACAACCACCTGTACAGGATACTTCTGCCGTTGCGGAGCCACCAAAAAAG AAGAAGCGACCCACGAAAAAGCAGAAGGAAGCTGCAGCTGCCGCTGCATTGGAGCAACAGCAACA ACAGCAGCAGCAACAAATGCAAGCATATTATGGACAGCAGCAACAACAGCAAGAAAGAATGCAAA TGATGCAGCAACAGCAACAACAAGGGCAAATGGTGCAGCAACCGG Found at i:6802950 original size:12 final size:12 Alignment explanation
Indices: 6802926--6802952 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 12 6802916 TGCATTGGAG * 6802926 CAACAGCAACAA 1 CAACAGCAGCAA * 6802938 CAGCAGCAGCAA 1 CAACAGCAGCAA 6802950 CAA 1 CAA 6802953 ATGCAAGCAT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.52, C:0.33, G:0.15, T:0.00 Consensus pattern (12 bp): CAACAGCAGCAA Left flanking sequence: Indices 6802426 -- 6802925 ATGTTATAATTCTTATTCACAAAATACGTGAAAAATTACAGTACCAGCAACGAATCCTTCAACAG CAACAGCAACAAGCAATGATGCAACAGCAACAACAACAAGTACAGCAGCAACAGCAGGCCCCACC ACCAACTACTCCGAATCCGGGGCATCCTCAAGGATTCTTTCCGACGAATCAGGCAGGTCCGCCAG GAACTCCGGGACGCCCCATTCCTCCGTATGCAATGGGTCAACCACCTATGTATCATCAAGCTGGA CCACAAGGACAGATGATTCAACGGATGAATTCTTATCCTGGTAATGCACAGCAGTTTCGTCCGCC TCCACAGCAGTCACAACAACCGATACCACCGCAGCAGCAGCAGCAACCACCTGCGCCTCCTCAAC AACTTCAACAACCACCTGTACAGGATACTTCTGCCGTTGCGGAGCCACCAAAAAAGAAGAAGCGA CCCACGAAAAAGCAGAAGGAAGCTGCAGCTGCCGCTGCATTGGAG Right flanking sequence: Indices 6802953 -- 6803452 ATGCAAGCATATTATGGACAGCAGCAACAACAGCAAGAAAGAATGCAAATGATGCAGCAACAGCA ACAACAAGGGCAAATGGTGCAGCAACCGGGATATCCAGGACAAGGTTATCCTGGAATGCCCCCTC CACAAGGAGCTTTTCCCCCAGGCTATCTTCCGGGAGGAGCTCAGCCAACACAACAACAAATATGG CAGCAACAGCAACAGGTACACATTCGGAAAAAATTATTCGAATAACTCAAAAATTTTCAGTTACA ACAACAACGAATGGCAATGTTCCAACAGCAGCAAGCACAAGGTCAGCAACCCGGTGGTCCACAAC AACCAATGGGACAATGGCCACAACAACGACAGCTTCCTGTTCCATACCCACCTGGAAACAATTCA ACGCCGGATGCTGTAAACCAGCAGCAGAATCCGATTCCAGGAGCAACCATGCAGCACCGATTGTC TGGAGAGTTTGCACCACCACCTGTTTCGTCTGGAAAAGTACATCC Found at i:6803014 original size:30 final size:30 Alignment explanation
Indices: 6802976--6803043 Score: 87 Period size: 30 Copynumber: 2.3 Consensus size: 30 6802966 ATGGACAGCA * * * * 6802976 GCAACAACAGCAAGAAAGAATGCAAATGAT 1 GCAGCAACAGCAACAAAAAAGGCAAATGAT * * * 6803006 GCAGCAACAGCAACAACAAGGGCAAATGGT 1 GCAGCAACAGCAACAAAAAAGGCAAATGAT 6803036 GCAGCAAC 1 GCAGCAAC 6803044 CGGGATATCC Statistics Matches: 31, Mismatches: 7, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 30 31 1.00 ACGTcount: A:0.47, C:0.22, G:0.24, T:0.07 Consensus pattern (30 bp): GCAGCAACAGCAACAAAAAAGGCAAATGAT Left flanking sequence: Indices 6802476 -- 6802975 CGAATCCTTCAACAGCAACAGCAACAAGCAATGATGCAACAGCAACAACAACAAGTACAGCAGCA ACAGCAGGCCCCACCACCAACTACTCCGAATCCGGGGCATCCTCAAGGATTCTTTCCGACGAATC AGGCAGGTCCGCCAGGAACTCCGGGACGCCCCATTCCTCCGTATGCAATGGGTCAACCACCTATG TATCATCAAGCTGGACCACAAGGACAGATGATTCAACGGATGAATTCTTATCCTGGTAATGCACA GCAGTTTCGTCCGCCTCCACAGCAGTCACAACAACCGATACCACCGCAGCAGCAGCAGCAACCAC CTGCGCCTCCTCAACAACTTCAACAACCACCTGTACAGGATACTTCTGCCGTTGCGGAGCCACCA AAAAAGAAGAAGCGACCCACGAAAAAGCAGAAGGAAGCTGCAGCTGCCGCTGCATTGGAGCAACA GCAACAACAGCAGCAGCAACAAATGCAAGCATATTATGGACAGCA Right flanking sequence: Indices 6803044 -- 6803543 CGGGATATCCAGGACAAGGTTATCCTGGAATGCCCCCTCCACAAGGAGCTTTTCCCCCAGGCTAT CTTCCGGGAGGAGCTCAGCCAACACAACAACAAATATGGCAGCAACAGCAACAGGTACACATTCG GAAAAAATTATTCGAATAACTCAAAAATTTTCAGTTACAACAACAACGAATGGCAATGTTCCAAC AGCAGCAAGCACAAGGTCAGCAACCCGGTGGTCCACAACAACCAATGGGACAATGGCCACAACAA CGACAGCTTCCTGTTCCATACCCACCTGGAAACAATTCAACGCCGGATGCTGTAAACCAGCAGCA GAATCCGATTCCAGGAGCAACCATGCAGCACCGATTGTCTGGAGAGTTTGCACCACCACCTGTTT CGTCTGGAAAAGTACATCCACAGCAACAGCAGCAAGGATCTTTTCATCGAAGTGATTCGTCGGCA AGCGTCTACTCTGGTAGTCACACACCATTCGGACAACAAGGTCCA Found at i:6805881 original size:11 final size:11 Alignment explanation
Indices: 6805859--6805881 Score: 32 Period size: 11 Copynumber: 2.1 Consensus size: 11 6805849 AAGTAGTATT * 6805859 CTTTGTTGAAA 1 CTTTCTTGAAA * 6805870 CTTTCTTTAAA 1 CTTTCTTGAAA 6805881 C 1 C 6805882 CAATCTCTAT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.26, C:0.17, G:0.09, T:0.48 Consensus pattern (11 bp): CTTTCTTGAAA Left flanking sequence: Indices 6805359 -- 6805858 CGCCACCATCACAGAATCCTCAAAATCCTTTACCGCAACCTCCACAAGTTATGCCTACAACGCCA ACTTCAGCAGCTCCCCCACAGCCGCAATCTCAAAATTGAGATTTTGAATATCACAAAAGAAGGCC AAATTGTTATGAGCGAAAAATCATTTTATCATGATTATCGATCTTTCCAATTTTTCTGTCTTATT CTTGGTTGGCTTCATGTCTTCAAATCCACCTACTCATCTCCTTTGCTCAGTTTGCTCAATGTCTT TTGTTACTGTTTTCCGGTGCTCTCTTTTAATTAAAGGTAGCTTAGTCTCATCAGAGAATACGTTT CTCAACTTGAAAAGAACAGATGTTTGCAAATTTTCCATTAATGGTCGCTCAATTTTCAGTATTTT CAACAAAAAGCTGGACACCTTTTTATTTTTTCTAAATGTACATAATTCTGCGTTTTTGAAAAAAT TGCAAATGTTCAGTAGATTTTTTTGGTGCAATGAGAAGTAGTATT Right flanking sequence: Indices 6805882 -- 6806381 CAATCTCTATTGTGCATCTCTCTGCTGGCTCTAGTCTGTTACCGTATCCCGCTCTTTTTTTGGTT TACAAAAGTGCTAAAGTGTTTGGAATTTTCAATTGTAAATTAACCTCCCCTCGCTCTCTTCATTA CCGGTTCTCTCTCTGAACTCTTTTAAATTAATATTTCCATTCTTGTGTTTTAATTTTAATTTGTA TTATTATCGATTCATGATTTTTGGCTGAAAGTCTTTGTCCCACCCACCAATAATCTTGTATCATC ATTCACCACCGACTTGATCCTCACCAGTTTTTCACACATTTTCCCACATCCAAAACATTTTTTTT GGTTTTCTCGAACTTTTACCACAATTGCTCAATTCACACTCACTCGTCTAACCCTCTTCATTTTG ATATCTCTAACCTTAAAAATGTCTAATGATATTACTATGTGTTTTTCAATTTTTCATTCAGTGCG CGGCCTTTTCATGTGTCGAAATTTGATTTCTTATAAAATTTTTAT Found at i:6808623 original size:12 final size:12 Alignment explanation
Indices: 6808606--6808634 Score: 44 Period size: 12 Copynumber: 2.4 Consensus size: 12 6808596 CCCAGCACGT * 6808606 GGAGGTCGTGGC 1 GGAGGTCATGGC * 6808618 GGAGGTCATGGT 1 GGAGGTCATGGC 6808630 GGAGG 1 GGAGG 6808635 ATATCCACAA Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.14, C:0.10, G:0.59, T:0.17 Consensus pattern (12 bp): GGAGGTCATGGC Left flanking sequence: Indices 6808106 -- 6808605 TTTCCTCGATTTATTGCATTTTTCTAAAATTAACAGGTAGTTTCGGAGAATTTATCCATAAAGGG GCACTGAGTATATTTGAATTCGACTAGGCTACATTTTTCACAAATTTGGTCAACTAAAATGGAAA TGCGATAGTTCTTCTCAAGTATAATTGTTATGAATTGTTATAAATATAATTGTTTTCTGAAAATT TATGTACCTTTTATAAGAATAAGGTCCTGCCGTGGCTGAGATAGCGCTGGTACACGGAGCCTACC TAAAATGGATACGTAATACTATCGATTCACAAAAAAACTGTATATGATTAAAAATCTTAATAATT AATGTTTCAAAGTACTCCTTCGTAGCTTGTCTGTTAATTTGTTTGTTTCTGCTGCAATCTTTTCA ACTGTCTAACGCCTACTATTCCAGAGCTTCTCTCTTTGATTTCTTGACAACTCACAGTCATAATG GACCCATATCAACAAGGAGGCCGTGGCGGTGGATTCCCAGCACGT Right flanking sequence: Indices 6808635 -- 6809134 ATATCCACAAGAAGGTTATGGTGCCGCTGCTGGTGGCTACGGTGGATACGATCCATACAATCCAT ATGGAGCCGCTGGTGGATATGGAATGTATCCAGGTCAAGGATACCCACCACAAGAAATGACTTCA CCTTTGGATGCCGAGATTCAGGCAGTTTTACGAGAAATTCATTTGGAAGTAACTGGACTGGAAAC CTCGGGTGATCAGTTTAGAAATGCCCGACGACTCTTAAACTCCGAGAAAGAACGTTTGGAGAACA ATATTGATCCAGAATGGCTCGAAGTTGATGTGGCCAAGCCAGTTAAGGTTTGCAAGAAGATTCTT GTTCCGATTTACCGTCATCCAAACGTGGGTTATAGTTTACATTTTATCTTTTACAAAATTCAATT TTCCAGTTCAACTTCATCGGTAAAGTTCTTGGACCGAAGGGAGCAACTCTCCAAACGCTATGCAA GACCCACAAATGTCATATTTACATTTTGGGACGTGGATCCACCAA Found at i:6809609 original size:18 final size:18 Alignment explanation
Indices: 6809586--6809622 Score: 60 Period size: 18 Copynumber: 2.1 Consensus size: 18 6809576 CTGGTGGACC 6809586 AATGGGAGGAAGAGGTGG 1 AATGGGAGGAAGAGGTGG ** 6809604 AATGGGAGGAATGGGTGG 1 AATGGGAGGAAGAGGTGG 6809622 A 1 A 6809623 CGAGGAAGAG Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.32, C:0.00, G:0.54, T:0.14 Consensus pattern (18 bp): AATGGGAGGAAGAGGTGG Left flanking sequence: Indices 6809086 -- 6809585 GCAAGACCCACAAATGTCATATTTACATTTTGGGACGTGGATCCACCAAGGATCGTGAGAAGGAG GCTGAGCTTTTGGCATCTGGAGATCCACAACACGCTCATTTCAGTGGGCCCCTTCACGTAAAGGT TGAAACTGTTGCTCCAGCATACATTGCCTACGGACGTGTCGCTGCGGTAATTGAGGAGTTGTCAA GAATTTTGCAACCGGTAAGGAAAATAGTTTTCAGATATTGTCATTTCATTTTTGGTTTTTTGTTG TTGCATGTGTCATCCACCTTTTTACTAACAGAAATATCCAAAGTGTCGTTATTTTTTTCAGATTC ATGAAGATACAACTCCGGCTCATTTGAAAAACGGCTCCGGAGATGGTGAAGAAAAGGAAGACGAA GAAAAGAAAGAAGGCGGAGAAGGTGGTGGAAGAGGTGGACGCGGTGGGCGTGGAGGATTTAGAGG AGGCTTCCGTGGAGGACGTGGAGGATTCGGTGGACCTGGTGGACC Right flanking sequence: Indices 6809623 -- 6810122 CGAGGAAGAGGAGGCCAAGCTGCTGGGTATGCATTCTAAAATATAAATTAGTTATAAAAAATAAA ATTTACAAAAATTATTAAAACCAAATTTCCAAAAATTAATTCTAAAAATTTTAATAAAATATATA AATACATGAAAACATTTGCAGATTCCGACCATACTAAAAACCCCAAAAATTCACCAAACGCTCCA AATCTGTCCAAAAATACAATTCTCAAATATTCAACCATCCTAATCAAAAAATATTCAATATTAAT GGAAACTATGCCCGAAAAACGTTTTGTTTCCTTTTTATCTTATATTTATTTTTCTTGTTTCTCTC TCTCTCTCTCTCTGCTTTTCTTTTTAAAATGGATCTCCATTCCTTTCTTGATTTGATCCATGATC ATATCTAATTTGATAATTTATTTTGTTGATATCTTCCAAAAAGTTTTCAAATAATTTAATCAAAC GTTGAAATAAAATATGTTATTCGGGAAAATGCGTGATTGCTACTA Found at i:6809702 original size:25 final size:24 Alignment explanation
Indices: 6809674--6809725 Score: 67 Period size: 24 Copynumber: 2.1 Consensus size: 24 6809664 TATAAATTAG * 6809674 TTATAAAAAATAAAATTTACAAAAA 1 TTAT-AAAAACAAAATTTACAAAAA * * * 6809699 TTATTAAAACCAAATTTCCAAAAA 1 TTATAAAAACAAAATTTACAAAAA 6809723 TTA 1 TTA 6809726 ATTCTAAAAA Statistics Matches: 23, Mismatches: 4, Indels: 1 0.82 0.14 0.04 Matches are distributed among these distances: 24 19 0.83 25 4 0.17 ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31 Consensus pattern (24 bp): TTATAAAAACAAAATTTACAAAAA Left flanking sequence: Indices 6809174 -- 6809673 TCCACAACACGCTCATTTCAGTGGGCCCCTTCACGTAAAGGTTGAAACTGTTGCTCCAGCATACA TTGCCTACGGACGTGTCGCTGCGGTAATTGAGGAGTTGTCAAGAATTTTGCAACCGGTAAGGAAA ATAGTTTTCAGATATTGTCATTTCATTTTTGGTTTTTTGTTGTTGCATGTGTCATCCACCTTTTT ACTAACAGAAATATCCAAAGTGTCGTTATTTTTTTCAGATTCATGAAGATACAACTCCGGCTCAT TTGAAAAACGGCTCCGGAGATGGTGAAGAAAAGGAAGACGAAGAAAAGAAAGAAGGCGGAGAAGG TGGTGGAAGAGGTGGACGCGGTGGGCGTGGAGGATTTAGAGGAGGCTTCCGTGGAGGACGTGGAG GATTCGGTGGACCTGGTGGACCAATGGGAGGAAGAGGTGGAATGGGAGGAATGGGTGGACGAGGA AGAGGAGGCCAAGCTGCTGGGTATGCATTCTAAAATATAAATTAG Right flanking sequence: Indices 6809726 -- 6810225 ATTCTAAAAATTTTAATAAAATATATAAATACATGAAAACATTTGCAGATTCCGACCATACTAAA AACCCCAAAAATTCACCAAACGCTCCAAATCTGTCCAAAAATACAATTCTCAAATATTCAACCAT CCTAATCAAAAAATATTCAATATTAATGGAAACTATGCCCGAAAAACGTTTTGTTTCCTTTTTAT CTTATATTTATTTTTCTTGTTTCTCTCTCTCTCTCTCTCTGCTTTTCTTTTTAAAATGGATCTCC ATTCCTTTCTTGATTTGATCCATGATCATATCTAATTTGATAATTTATTTTGTTGATATCTTCCA AAAAGTTTTCAAATAATTTAATCAAACGTTGAAATAAAATATGTTATTCGGGAAAATGCGTGATT GCTACTAAATTATGAATATAATTGCAGAAAACTACTATAAAAGTCGCGTGAATTTGCATAAGTAA TTTGTTAAGGAAAAATGAAAAAAATACCTGAAAATGGGTGGGGAA Found at i:6811711 original size:11 final size:11 Alignment explanation
Indices: 6811685--6811712 Score: 33 Period size: 11 Copynumber: 2.5 Consensus size: 11 6811675 TGAACAAATG 6811685 TGAAAAATTGT 1 TGAAAAATTGT * 6811696 AGAAAACATT-T 1 TGAAAA-ATTGT 6811707 TGAAAA 1 TGAAAA 6811713 TTATTTCAGA Statistics Matches: 14, Mismatches: 2, Indels: 2 0.78 0.11 0.11 Matches are distributed among these distances: 11 11 0.79 12 3 0.21 ACGTcount: A:0.54, C:0.04, G:0.14, T:0.29 Consensus pattern (11 bp): TGAAAAATTGT Left flanking sequence: Indices 6811185 -- 6811684 GAAACAGGAAACTGTATTGACGAATTTTTTTTGAATTTAGGGCACTTCACGAAAAAACACAAAAA TGGTATGTAATCAAGACGATTTTGTCACAAAATACCGATAAAACGGAATATGAGAAAGAAATTCT CGCGTATGAAGAGGTAACATGATTTTTATTAAGATTTTCAACTAGTAAACGTTTTTAAAATAATT TTTTGCACACTTGGACAGATATTTTCTCTTAAAGCTTATTAAATATTTAAATATGAGAAAATTTT TTTAAACTGAAAATTCAAATGTGTATCGGATGGTAAATCTCATAAACGAAGCTGTGATACGATAA CAGGTAAGGTTTTGAATTTTTAAAAGAAATGTTTCTGTTTTCAAATTTTATAAACTTGAGCAATA AATACATTTTGGTTCAAAAATAATTTTCCGAAAATTGATAAAACCTATTTATGATTTTCTATTTT TATTATTCTCAAACAATTATCGATGATTTTTAAAGTGAACAAATG Right flanking sequence: Indices 6811713 -- 6812212 TTATTTCAGATAAATTCAGTTTTATATCTAAATAATTTCAGTGTTCACAATCCGATTACGTAGTT GGTTATCATGGTTGTGAAGTGAGCAGTATAAAGAAAGAACTTGTGCTTGAATATATGGATAAAGG AGATTTTCGACCATTTGGTATTCTACCGTTTTCTGTTCATCAAAGTGTTGCACTTTCACTTATTC GTGCAATTCGACATGTTTGGAATAGTGGACCGGGTTATATTCATCGTGATATAAAACCGGAGAAT ATTCTTGTAAATTCACAAGGATATGTCAAGATTTGTGATTTTGGAGCAGCTAAGGTGAGCATTAG TTAATTTTTATTTTTGATTTAAACTCGTATTGAACTGTATTTCCAGAGAATTGACAATACATACA GGATAGCATCATCGGCAGCAGGTACACAAATGTATCAAGCACCTGAACAACAGATGGGACAAGAT TATAGGTACGAATTTTTTCAGATTAGTTTCCTCTATTTTCCATCA Found at i:6813104 original size:12 final size:12 Alignment explanation
Indices: 6813084--6813115 Score: 41 Period size: 12 Copynumber: 2.6 Consensus size: 12 6813074 GAAAACCGTT 6813084 GAAAATGTGTGA 1 GAAAATGTGTGA * * 6813096 GAAATTGTGTGC 1 GAAAATGTGTGA 6813108 GAGAAATG 1 GA-AAATG 6813116 AATGGTGTTT Statistics Matches: 16, Mismatches: 3, Indels: 1 0.80 0.15 0.05 Matches are distributed among these distances: 12 12 0.75 13 4 0.25 ACGTcount: A:0.38, C:0.03, G:0.34, T:0.25 Consensus pattern (12 bp): GAAAATGTGTGA Left flanking sequence: Indices 6812584 -- 6813083 TCTAATTGGTATGCTTTTTCAAGTTTATTTGTCTTGGTTTAAAAAAAAACATGTCTAGCCTCTAT TCACATACCAATTTTGTCAAAATGTTTTTCCTGGTTCCAAAAACTAGCTGTTCTTTTTATTTTAT TGCACTTTCGACGAGTTTTTATTATTTGTTAGTTGAAAGTTCTGTAGTTGAATGCCATTTAATGC AAATAATTTGAAATATTTTCAGTCTTCGTCGTCAACCATCGGCTCGTTGGAATGCTGATCAAATT GAACAAAGTGATTATCTACGAGATCTTCCTGAACCGAATCGTCAAAGTGTTGCTAATTTTGTGAA TAACTATTACCAACGGTAGAAAACAGTTTATTTTGTTTAAGTTCACTCTCTTCTACAAAATAAAA AATTTTTGGATCAAAAAAAGTATTTGGACGAACGGTTGGTGGGATTTTTTGGTGGAAGGATGGAC TGAAAATTCGGGGAAAAAGGACAGGAAAAGTTGAGGAAAACCGTT Right flanking sequence: Indices 6813116 -- 6813615 AATGGTGTTTTAGTCAACCGGGAAGATGAGAGCCAGCGAGGAATATTTTTAGAATTAAAATTATG ATTTAGAGCTAATTATTCTTAAAAGAATCTCAATCGTCTAGTGGCTCTTTCATTAAGAATTGTTG CAATTTCTGCTATCCTTTGACGTAGTTCAATTTCATCTTGTTCTTCTGCAGCGGCTTCGATAAGT GCTTCTTCTGGCACAAAGATTACCTGAAAGTTTTAAATATAGATTCAGATATTACGGAAACAAAA ATTTTTCGAATTTCGAAAGTCGACACGGTCGCTAGTCGTTTAATGAATTACTGCAGTTTTCGCTA CGAGATATTTTGCGCAATACGCAGTCTCAGAATTTTGTGTTCCAGTATATCAGTTTTGTAGCCCA ATTTTTCCAAAACCTAGTTAAATTATTCTAATTACCTCTTGATTTTCTTCAAATTGTTCCGGTAG ATCATTTTCATCATAAGCCTCAAATACTGGAACGGAACGACGATC Found at i:6822714 original size:12 final size:11 Alignment explanation
Indices: 6822692--6822714 Score: 37 Period size: 12 Copynumber: 2.0 Consensus size: 11 6822682 ACTACAAGGG 6822692 CAATCGGCCAT 1 CAATCGGCCAT 6822703 CAATCAGGCCAT 1 CAATC-GGCCAT 6822715 TCAGGGCAAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 11 5 0.45 12 6 0.55 ACGTcount: A:0.30, C:0.35, G:0.17, T:0.17 Consensus pattern (11 bp): CAATCGGCCAT Left flanking sequence: Indices 6822192 -- 6822691 ATAACACTGTAATTTTTCACTCTTTCCTTCCTTCCTTGTGTTGTTTTTGTTCAAATATGATTCGG GAACTTAATATCGAATCATGAAATTTCTGTTTTTGTTCTTTTTTCTGATTTCTGAAAACTAATTG CATGCCAAACTTCTTTTTTTTTCAAATTTTTGCTGTAAAATGAAAATTTTGTTGCCTTTATTCGT TGTATTTAATTAAATACAACATCCCCTGGTAGAAACCGTGCCATGTATCTGCGAAAACGCGCGCC GCACATTGCGGTTCAAGCCACGCCCACTTTTCAAACGGCTCTGCTTTCGAATATTATTTTTAGAT CTAATTTTTCTACACTTTTTACGACGGGAAAGGTTGAAATACATGGTTTTCGTATAATTCCAGTC TTGTGAACTTATGTCTCTTCAATATTTGCAACATCTCAATTTTTGTTCCATGAATATATGTGTTT CAGCCGTGTTCCACAATGCACTTGTACAATTTGACACTACAAGGG Right flanking sequence: Indices 6822715 -- 6823214 TCAGGGCAATTTCTCTGGAACCCCCAAGGCGCAGGTATAAAAGTTAGAGAATTATATGATTGAAA ATGTGTTTCTTCCAGGAAATCGTTGTTGGGCGCGGATCAGCACTGGAGTTGCTCACACTGGATAC AGTTACAGGCAAAATAAAAGTAAGAAATTGATAAACTTACAGATTTTGATAAACGAGAATTGATT TTTAAGGTTATGTGCCACCAGGACATTTTCGGAATAGTTCGATCGCTTCTCGCTTTCCGTTTGAC AGCTGGAACTCGAGATTTCATCGCAGTTGGTTCAGACTCGGGTAGAATTGTGATTTTACAATATA ACGCTGAAAAAACATGTTTCGAGCGGCTGCATCAGGTAACCTTCCGCGTGGAAAGCATATATTTT CACTATTTTCTTTAGGAAACTTTCGGAAAAACTGGATGCCGTCGAATCGTTCCAGGCCATTTCTT GGTTGGAGACCCACGTGGACGTGCATTAATGATTGGAGCCGTTGA Found at i:6827230 original size:18 final size:19 Alignment explanation
Indices: 6827204--6827250 Score: 64 Period size: 18 Copynumber: 2.5 Consensus size: 19 6827194 GTAATTATTT * 6827204 TTTTTAAATCAAAATTA-G 1 TTTTAAAATCAAAATTATG * 6827222 TTTTAAAATTAAAATTATG 1 TTTTAAAATCAAAATTATG 6827241 TTTTCAAAAT 1 TTTT-AAAAT 6827251 AACGCTTCAA Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 18 15 0.60 19 5 0.20 20 5 0.20 ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47 Consensus pattern (19 bp): TTTTAAAATCAAAATTATG Left flanking sequence: Indices 6826704 -- 6827203 GCTCTTGTGCAATTCTCGAAGCATCCGAATGAAGCTATGGTGCTGGTTGGTTGTGGAGTTAATGA AGTTCTTAATGTACATGACATTGATCCAAATGATACATCCATTCGGCCAACTAGAGGATGTGTTT ATACATTCCATCTATCAGCAAATGGTGATCGATTCGACTTTTTGCACAGAACGGAAACACCATTG GTAAGCTTTATAGCTATTTAATTTTCATTTAAAAATGAATGAGTATATTACCCAGGGGAGAAGTT TTGCACTGATTGCTTCAAATATACGATAACCGTTCTCGACGCGAAAAATTTTAAACTATGAAAAA TCGGATTCCGCATCAAAAATGTGTACTGTAATTTCAAAATTTCAAAGAAATGTAGATGTTTCGTG TGTTGATGAAAAAACATTTTTTTTTCGAAAAAAATGAAATTTTGATTAACTGAAAAATTAAAAAT GTTTAAATGCTTAAGTTTTCCCAAAAATCACACTCGTAATTATTT Right flanking sequence: Indices 6827251 -- 6827750 AACGCTTCAAACTAAAAAAATAAGTTTTTCTAATTTTTTCAGTTTTTCCTTTTTTGTTTTCGAAA AAATCGTGTCGAGACCGGGTACCGTATCTTTTTGGTAACTTTTTCTTCTGGGGATGACTCAGTTA TTTTAATTTTATCTTCTAAATTTGTATTCAAAATTGAGATTTTTATGCATAATTTATCTTTTAAA AAAATTAAATTTCAGCCAGTGGGAGCAATTCATGATTTCCGTGGCATGGCACTCGTCGGTTTTGG TCGATTCCTCCGAATGTACGACATTGGACAGAAAAAGTTATTGGCAAAGTGCGAAAACAAGGTCA GTTTCTTTCTTTTTTTCAAATAAACCCCCAGGAATGTTCATTTAAAATGTGTGAAAATTGACAAT AGGAAGGGCCGGAAGGCAGCATGTGTGCAGAATTTGAATTTGATTAGTCAGAGAAAGGAATGACA TACAGACACAGATGAGGTCGGAAGGATTCAACAAAAAAGTGAAAA Found at