TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11900340 original size:14 final size:14 Alignment explanation
Indices: 11900323--11900350 Score: 56 Period size: 14 Copynumber: 2.0 Consensus size: 14 11900313 TGTTTTAAAA 11900323 AAATTTTAAAATTT 1 AAATTTTAAAATTT 11900337 AAATTTTAAAATTT 1 AAATTTTAAAATTT 11900351 TTTTTAATTT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (14 bp): AAATTTTAAAATTT Left flanking sequence: Indices 11899823 -- 11900322 AACGATATAAAATTAATAATCAGCAATATCCTGTGAATGATAATAATCTTCCTTGAGACGATTCA CATGAGACGGAATAACGCATGAAGTATTCGAGACAAAAAGGGTAACCAAATCAGATTGAAGACAA TCAAATGCCGGATGAAGACAGTCTACAAGGCCTGCTGATTTGGCTGATAGATCGAATGGAAGGGA ATTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGAAGAATGGACACAGTTTGTAGAATG GAGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTTTCCATTTTTTTCGTTCATAATACT CAAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAAAAAATAAGTGATTTTTCAATTTTT GTTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGGCCAGAATATGCACAGAAAATTTAA AATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTTAAAA Right flanking sequence: Indices 11900351 -- 11900850 TTTTTAATTTAAAATTTTCTTTAATTTTTTTGAAATTGTTTATTTTATTTTAGAAATTTAAATTT TTTCTTTGAACTTTTTTTTTTAATTTTTTGAAATTTAAAATTTAAATTTTTTCTTTAAATTTTAT TTTTTTCTAGAAATTTAAATTTTCTTTAATTTTTTAAAATTTAAATTTAAATTTAAATTTTATTT TTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATGCCACTAATAGTTTCGAAAAAATTATA AAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCGAAAAATTCGCTTTATTAAATTTTTTC CGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCACTTTTTGAATAGAAAAGTCTTCAGAA AACGATTTTAAATTTTTTTTAGAAAAAAAAACTGATTTTTAACCGATTTTTTAGTCCTTTTTTAG AAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCTTGGCAA Found at i:11900363 original size:17 final size:17 Alignment explanation
Indices: 11900341--11900377 Score: 67 Period size: 17 Copynumber: 2.2 Consensus size: 17 11900331 AAATTTAAAT * 11900341 TTTAAAATTTTTTTTAA 1 TTTAAAATTTTCTTTAA 11900358 TTTAAAATTTTCTTTAA 1 TTTAAAATTTTCTTTAA 11900375 TTT 1 TTT 11900378 TTTTGAAATT Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 17 19 1.00 ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65 Consensus pattern (17 bp): TTTAAAATTTTCTTTAA Left flanking sequence: Indices 11899841 -- 11900340 ATCAGCAATATCCTGTGAATGATAATAATCTTCCTTGAGACGATTCACATGAGACGGAATAACGC ATGAAGTATTCGAGACAAAAAGGGTAACCAAATCAGATTGAAGACAATCAAATGCCGGATGAAGA CAGTCTACAAGGCCTGCTGATTTGGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTGTG CAGGGAATCCGGATTTGTCATGAAGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGACTG AAAAAATTGGAAAATTATTATTTTCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAGTT AGGAAAAAAAAAGAAAATCGAAAAAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAAAA TGAGAATGCTTTTTTTTTAATGGCCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGATT TTTTTAGAAATTTAAATTGTTTTAAAAAAATTTTAAAATTTAAAT Right flanking sequence: Indices 11900378 -- 11900877 TTTTGAAATTGTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTGAACTTTTTTTTTTAATTTT TTGAAATTTAAAATTTAAATTTTTTCTTTAAATTTTATTTTTTTCTAGAAATTTAAATTTTCTTT AATTTTTTAAAATTTAAATTTAAATTTAAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTT TGTTGAAAAATGCCACTAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAG CTGATTTTCTCGAAAAATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGG TAATTTTAAGCACTTTTTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAA AAAACTGATTTTTAACCGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAA CACAATGCCTCTTGGCAAGAAGTGCAATTTGATGTCCACCAGCAG Found at i:11900397 original size:41 final size:40 Alignment explanation
Indices: 11900348--11900454 Score: 108 Period size: 41 Copynumber: 2.6 Consensus size: 40 11900338 AATTTTAAAA *** * 11900348 TTTTTTTTAATTTA-AAATTTTCTTTAATTTTTTTGAAATT 1 TTTTTTTTAATTTAGAAATTTAAATT-ATTTCTTTGAAATT * * * * 11900388 GTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTGAACTT 1 -TTTTTTTTAATTTAGAAATTTAAATTATTTCTTTGAAATT * 11900429 TTTTTTTTAATTTTTTGAAATTTAAA 1 TTTTTTTTAA--TTTAGAAATTTAAA 11900455 ATTTAAATTT Statistics Matches: 52, Mismatches: 11, Indels: 5 0.76 0.16 0.07 Matches are distributed among these distances: 40 8 0.15 41 23 0.44 42 21 0.40 ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64 Consensus pattern (40 bp): TTTTTTTTAATTTAGAAATTTAAATTATTTCTTTGAAATT Left flanking sequence: Indices 11899848 -- 11900347 ATATCCTGTGAATGATAATAATCTTCCTTGAGACGATTCACATGAGACGGAATAACGCATGAAGT ATTCGAGACAAAAAGGGTAACCAAATCAGATTGAAGACAATCAAATGCCGGATGAAGACAGTCTA CAAGGCCTGCTGATTTGGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTGTGCAGGGAA TCCGGATTTGTCATGAAGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGACTGAAAAAAT TGGAAAATTATTATTTTCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAGTTAGGAAAA AAAAAGAAAATCGAAAAAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAAAATGAGAAT GCTTTTTTTTTAATGGCCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGATTTTTTTAG AAATTTAAATTGTTTTAAAAAAATTTTAAAATTTAAATTTTAAAA Right flanking sequence: Indices 11900455 -- 11900954 ATTTAAATTTTTTCTTTAAATTTTATTTTTTTCTAGAAATTTAAATTTTCTTTAATTTTTTAAAA TTTAAATTTAAATTTAAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATG CCACTAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCG AAAAATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCA CTTTTTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAAAAACTGATTTT TAACCGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCT TGGCAAGAAGTGCAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAGGGAAATAAGCA GCAGCGACTAGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCG Found at i:11900449 original size:42 final size:40 Alignment explanation
Indices: 11900375--11900458 Score: 108 Period size: 42 Copynumber: 2.0 Consensus size: 40 11900365 TTTTCTTTAA * * 11900375 TTTTTTTGAAATTGTTTATTTTATTTTAGAAATTTAAATT 1 TTTTTTTGAAATTGTTTATTTAATTTTAGAAATTTAAAAT * * * * 11900415 TTTTCTTTGAACTTTTTTTTTTAATTTTTTGAAATTTAAAAT 1 TTTT-TTTGAAATTGTTTATTTAA-TTTTAGAAATTTAAAAT 11900457 TT 1 TT 11900459 AAATTTTTTC Statistics Matches: 36, Mismatches: 6, Indels: 2 0.82 0.14 0.05 Matches are distributed among these distances: 40 4 0.11 41 15 0.42 42 17 0.47 ACGTcount: A:0.27, C:0.02, G:0.06, T:0.64 Consensus pattern (40 bp): TTTTTTTGAAATTGTTTATTTAATTTTAGAAATTTAAAAT Left flanking sequence: Indices 11899875 -- 11900374 TTGAGACGATTCACATGAGACGGAATAACGCATGAAGTATTCGAGACAAAAAGGGTAACCAAATC AGATTGAAGACAATCAAATGCCGGATGAAGACAGTCTACAAGGCCTGCTGATTTGGCTGATAGAT CGAATGGAAGGGAATTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGAAGAATGGACAC AGTTTGTAGAATGGAGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTTTCCATTTTTTT CGTTCATAATACTCAAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAAAAAATAAGTGA TTTTTCAATTTTTGTTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGGCCAGAATATGC ACAGAAAATTTAAAATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTTAAAAAAATTTT AAAATTTAAATTTTAAAATTTTTTTTAATTTAAAATTTTCTTTAA Right flanking sequence: Indices 11900459 -- 11900958 AAATTTTTTCTTTAAATTTTATTTTTTTCTAGAAATTTAAATTTTCTTTAATTTTTTAAAATTTA AATTTAAATTTAAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATGCCAC TAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCGAAAA ATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCACTTT TTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAAAAACTGATTTTTAAC CGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCTTGGC AAGAAGTGCAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAGGGAAATAAGCAGCAG CGACTAGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTT Found at i:11900499 original size:25 final size:25 Alignment explanation
Indices: 11900469--11900528 Score: 81 Period size: 25 Copynumber: 2.4 Consensus size: 25 11900459 AAATTTTTTC 11900469 TTTAAATTTTATTT-TTTTCTAGAAA 1 TTTAAATTTTATTTATTTTCTA-AAA * * 11900494 TTTAAATTTTCTTTAATTTTTTAAAA 1 TTTAAATTTTATTT-ATTTTCTAAAA 11900520 TTTAAATTT 1 TTTAAATTT 11900529 AAATTTAAAT Statistics Matches: 31, Mismatches: 2, Indels: 3 0.86 0.06 0.08 Matches are distributed among these distances: 25 13 0.42 26 12 0.39 27 6 0.19 ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62 Consensus pattern (25 bp): TTTAAATTTTATTTATTTTCTAAAA Left flanking sequence: Indices 11899969 -- 11900468 GACAGTCTACAAGGCCTGCTGATTTGGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTG TGCAGGGAATCCGGATTTGTCATGAAGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGAC TGAAAAAATTGGAAAATTATTATTTTCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAG TTAGGAAAAAAAAAGAAAATCGAAAAAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAA AATGAGAATGCTTTTTTTTTAATGGCCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGA TTTTTTTAGAAATTTAAATTGTTTTAAAAAAATTTTAAAATTTAAATTTTAAAATTTTTTTTAAT TTAAAATTTTCTTTAATTTTTTTGAAATTGTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTG AACTTTTTTTTTTAATTTTTTGAAATTTAAAATTTAAATTTTTTC Right flanking sequence: Indices 11900529 -- 11901028 AAATTTAAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATGCCACTAATA GTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCGAAAAATTCG CTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCACTTTTTGAA TAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAAAAACTGATTTTTAACCGATT TTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCTTGGCAAGAA GTGCAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAGGGAAATAAGCAGCAGCGACT AGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTTCATAGAGCTCAATTGCAGTTGCAAA GTCAGGAGTTGATTCAATATGTTCTTCTTCATCAACTACATCAAT Found at i:11900514 original size:11 final size:11 Alignment explanation
Indices: 11900494--11900534 Score: 38 Period size: 10 Copynumber: 3.8 Consensus size: 11 11900484 TTTCTAGAAA 11900494 TTTAAATTTTC 1 TTTAAATTTTC 11900505 TTT-AATTTT- 1 TTTAAATTTTC * ** 11900514 TTAAAATTTAAA 1 TTTAAATTT-TC 11900526 TTTAAATTT 1 TTTAAATTT 11900535 AAATTTTATT Statistics Matches: 24, Mismatches: 3, Indels: 5 0.75 0.09 0.16 Matches are distributed among these distances: 9 2 0.08 10 11 0.46 11 3 0.12 12 8 0.33 ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61 Consensus pattern (11 bp): TTTAAATTTTC Left flanking sequence: Indices 11899994 -- 11900493 GGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGA AGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTT TCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAA AAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGG CCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTT AAAAAAATTTTAAAATTTAAATTTTAAAATTTTTTTTAATTTAAAATTTTCTTTAATTTTTTTGA AATTGTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTGAACTTTTTTTTTTAATTTTTTGAAA TTTAAAATTTAAATTTTTTCTTTAAATTTTATTTTTTTCTAGAAA Right flanking sequence: Indices 11900535 -- 11901034 AAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATGCCACTAATAGTTTCG AAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCGAAAAATTCGCTTTAT TAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCACTTTTTGAATAGAAA AGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAAAAACTGATTTTTAACCGATTTTTTAG TCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCTTGGCAAGAAGTGCAA TTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAGGGAAATAAGCAGCAGCGACTAGAACA ACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTTCATAGAGCTCAATTGCAGTTGCAAAGTCAGG AGTTGATTCAATATGTTCTTCTTCATCAACTACATCAATTACACG Found at i:11900533 original size:38 final size:37 Alignment explanation
Indices: 11900429--11900572 Score: 112 Period size: 38 Copynumber: 3.9 Consensus size: 37 11900419 CTTTGAACTT * * 11900429 TTTTTTTTAATTTTTTGAAATTTAAAATTTAAA-TT--- 1 TTTTCTTTAATATTTT-AAATTT-AAATTTAAATTTAAA ** *** ** 11900464 TTTTCTTTAA-ATTTTATTTTTTTCTAGAAATTTAAA 1 TTTTCTTTAATATTTTAAATTTAAATTTAAATTTAAA * 11900500 TTTTCTTTAATTTTTTAAAATTTAAATTTAAATTTAAA 1 TTTTCTTTAATATTTT-AAATTTAAATTTAAATTTAAA * ** * * 11900538 TTTTATTTTTTATTTTTTAATTTAAATTTAATTTT 1 TTTTCTTTAATA-TTTTAAATTTAAATTTAAATTT 11900573 TGTTGAAAAA Statistics Matches: 79, Mismatches: 23, Indels: 11 0.70 0.20 0.10 Matches are distributed among these distances: 32 4 0.05 33 6 0.08 34 4 0.05 35 9 0.11 36 10 0.13 37 4 0.05 38 38 0.48 39 4 0.05 ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64 Consensus pattern (37 bp): TTTTCTTTAATATTTTAAATTTAAATTTAAATTTAAA Left flanking sequence: Indices 11899929 -- 11900428 GTAACCAAATCAGATTGAAGACAATCAAATGCCGGATGAAGACAGTCTACAAGGCCTGCTGATTT GGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGA AGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTT TCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAA AAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGG CCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTT AAAAAAATTTTAAAATTTAAATTTTAAAATTTTTTTTAATTTAAAATTTTCTTTAATTTTTTTGA AATTGTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTGAACTT Right flanking sequence: Indices 11900573 -- 11901072 TGTTGAAAAATGCCACTAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAG CTGATTTTCTCGAAAAATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGG TAATTTTAAGCACTTTTTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAA AAAACTGATTTTTAACCGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAA CACAATGCCTCTTGGCAAGAAGTGCAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCA GGGAAATAAGCAGCAGCGACTAGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTTCATA GAGCTCAATTGCAGTTGCAAAGTCAGGAGTTGATTCAATATGTTCTTCTTCATCAACTACATCAA TTACACGATGTTTTCGGCCTGATTTGACGGCATGTGATAGGAAAT Found at i:11900541 original size:26 final size:25 Alignment explanation
Indices: 11900454--11900566 Score: 71 Period size: 26 Copynumber: 4.4 Consensus size: 25 11900444 TGAAATTTAA *** 11900454 AATTTAAATTTT-TTCTTTAAATTT 1 AATTTAAATTTTAAAATTTAAATTT * ** * 11900478 TATTT-TTTTCTAGAAATTTAAATTT 1 AATTTAAATTTTA-AAATTTAAATTT ** * 11900503 TCTTTAATTTTTTAAAATTTAAATTT 1 AATTTAA-ATTTTAAAATTTAAATTT *** ** 11900529 AAATTTAAATTTTATTTTTTATTTTTT 1 -AATTTAAATTTTAAAATTTA-AATTT 11900556 AATTTAAATTT 1 AATTTAAATTT 11900567 AATTTTTGTT Statistics Matches: 65, Mismatches: 18, Indels: 10 0.70 0.19 0.11 Matches are distributed among these distances: 23 3 0.05 24 4 0.06 25 13 0.20 26 32 0.49 27 13 0.20 ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63 Consensus pattern (25 bp): AATTTAAATTTTAAAATTTAAATTT Left flanking sequence: Indices 11899954 -- 11900453 CAAATGCCGGATGAAGACAGTCTACAAGGCCTGCTGATTTGGCTGATAGATCGAATGGAAGGGAA TTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGAAGAATGGACACAGTTTGTAGAATGG AGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTTTCCATTTTTTTCGTTCATAATACTC AAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAAAAAATAAGTGATTTTTCAATTTTTG TTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGGCCAGAATATGCACAGAAAATTTAAA ATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTTAAAAAAATTTTAAAATTTAAATTTT AAAATTTTTTTTAATTTAAAATTTTCTTTAATTTTTTTGAAATTGTTTATTTTATTTTAGAAATT TAAATTTTTTCTTTGAACTTTTTTTTTTAATTTTTTGAAATTTAA Right flanking sequence: Indices 11900567 -- 11901066 AATTTTTGTTGAAAAATGCCACTAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGAT TTCTAGCTGATTTTCTCGAAAAATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAA AAAAGGTAATTTTAAGCACTTTTTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTA GAAAAAAAAACTGATTTTTAACCGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCAC CTGGAACACAATGCCTCTTGGCAAGAAGTGCAATTTGATGTCCACCAGCAGGTACAAGACATGAT CCATCAGGGAAATAAGCAGCAGCGACTAGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGAC TTCATAGAGCTCAATTGCAGTTGCAAAGTCAGGAGTTGATTCAATATGTTCTTCTTCATCAACTA CATCAATTACACGATGTTTTCGGCCTGATTTGACGGCATGTGATA Found at i:11900549 original size:70 final size:71 Alignment explanation
Indices: 11900429--11900573 Score: 192 Period size: 70 Copynumber: 2.1 Consensus size: 71 11900419 CTTTGAACTT * * *** ** 11900429 TTTTTTTTAATTTTTTGAAATTTAAAATTTAAATTTTTTCTTTAAATTTTATTTTTTTCTAGAAA 1 TTTTCTTTAATTTTTTAAAATTTAAAATTTAAATTTAAACTTTAAATTTTATTTTTTAATAGAAA 11900494 TTTAAA 66 TTTAAA * ** ** 11900500 TTTTCTTTAATTTTTTAAAATTT-AAATTTAAATTTAAATTTTATTTTTTATTTTTTAATTTAAA 1 TTTTCTTTAATTTTTTAAAATTTAAAATTTAAATTTAAACTTTAAATTTTATTTTTTAATAGAAA * 11900564 TTTAAT 66 TTTAAA 11900570 TTTT 1 TTTT 11900574 GTTGAAAAAT Statistics Matches: 61, Mismatches: 13, Indels: 1 0.81 0.17 0.01 Matches are distributed among these distances: 70 40 0.66 71 21 0.34 ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64 Consensus pattern (71 bp): TTTTCTTTAATTTTTTAAAATTTAAAATTTAAATTTAAACTTTAAATTTTATTTTTTAATAGAAA TTTAAA Left flanking sequence: Indices 11899929 -- 11900428 GTAACCAAATCAGATTGAAGACAATCAAATGCCGGATGAAGACAGTCTACAAGGCCTGCTGATTT GGCTGATAGATCGAATGGAAGGGAATTCGAGCGGAATGTGTGCAGGGAATCCGGATTTGTCATGA AGAATGGACACAGTTTGTAGAATGGAGCGAGCACGTAGACTGAAAAAATTGGAAAATTATTATTT TCCATTTTTTTCGTTCATAATACTCAAAATAGTCTCAAAGTTAGGAAAAAAAAAGAAAATCGAAA AAAATAAGTGATTTTTCAATTTTTGTTGAATTCCTTCCAAAATGAGAATGCTTTTTTTTTAATGG CCAGAATATGCACAGAAAATTTAAAATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTT AAAAAAATTTTAAAATTTAAATTTTAAAATTTTTTTTAATTTAAAATTTTCTTTAATTTTTTTGA AATTGTTTATTTTATTTTAGAAATTTAAATTTTTTCTTTGAACTT Right flanking sequence: Indices 11900574 -- 11901073 GTTGAAAAATGCCACTAATAGTTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGC TGATTTTCTCGAAAAATTCGCTTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGT AATTTTAAGCACTTTTTGAATAGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAA AAACTGATTTTTAACCGATTTTTTAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAAC ACAATGCCTCTTGGCAAGAAGTGCAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAG GGAAATAAGCAGCAGCGACTAGAACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTTCATAG AGCTCAATTGCAGTTGCAAAGTCAGGAGTTGATTCAATATGTTCTTCTTCATCAACTACATCAAT TACACGATGTTTTCGGCCTGATTTGACGGCATGTGATAGGAAATT Found at i:11900790 original size:11 final size:11 Alignment explanation
Indices: 11900770--11900791 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 11900760 TAGAAAAAAA * 11900770 AACTGATTTTT 1 AACCGATTTTT 11900781 AACCGATTTTT 1 AACCGATTTTT 11900792 TAGTCCTTTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50 Consensus pattern (11 bp): AACCGATTTTT Left flanking sequence: Indices 11900270 -- 11900769 AAATTTAAAATTTCTAAAACTCGATTTTTTTAGAAATTTAAATTGTTTTAAAAAAATTTTAAAAT TTAAATTTTAAAATTTTTTTTAATTTAAAATTTTCTTTAATTTTTTTGAAATTGTTTATTTTATT TTAGAAATTTAAATTTTTTCTTTGAACTTTTTTTTTTAATTTTTTGAAATTTAAAATTTAAATTT TTTCTTTAAATTTTATTTTTTTCTAGAAATTTAAATTTTCTTTAATTTTTTAAAATTTAAATTTA AATTTAAATTTTATTTTTTATTTTTTAATTTAAATTTAATTTTTGTTGAAAAATGCCACTAATAG TTTCGAAAAAATTATAAAATTTAAGTTGAAAATTGATTTCTAGCTGATTTTCTCGAAAAATTCGC TTTATTAAATTTTTTCCGTTGATTTTTTTTTTCGGAAAAAAGGTAATTTTAAGCACTTTTTGAAT AGAAAAGTCTTCAGAAAACGATTTTAAATTTTTTTTAGAAAAAAA Right flanking sequence: Indices 11900792 -- 11901291 TAGTCCTTTTTTAGAAAAACGGGCATTTTAAGCACCTGGAACACAATGCCTCTTGGCAAGAAGTG CAATTTGATGTCCACCAGCAGGTACAAGACATGATCCATCAGGGAAATAAGCAGCAGCGACTAGA ACAACTTTCGAGGCTTCAGGCATCTTCGAGGCGACTTCATAGAGCTCAATTGCAGTTGCAAAGTC AGGAGTTGATTCAATATGTTCTTCTTCATCAACTACATCAATTACACGATGTTTTCGGCCTGATT TGACGGCATGTGATAGGAAATTGTGCATTGTTTGAGATGAACGAAGTGAATGAACTAGTACAACA TCATTATTGAATAAAAGTTCCGTTGATTGAGATGCAATACATTCACGAGATGATTCGATTTCCGT TACTAGCTGAAAATGAAAAAATTGCATTAAAAATGTGTAGTTTTTGAATAAAAATTATAATTTTC CCTTTTTTTTGATATTAATATCATCGAAATCTACATTTTTTATGA Found at i:11903472 original size:10 final size:11 Alignment explanation
Indices: 11903450--11903473 Score: 34 Period size: 11 Copynumber: 2.3 Consensus size: 11 11903440 TTTTTTACTT 11903450 AAAAAGTGCCA 1 AAAAAGTGCCA * 11903461 AAAATGTG-CA 1 AAAAAGTGCCA 11903471 AAA 1 AAA 11903474 TTTAGCTGAA Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 10 5 0.42 11 7 0.58 ACGTcount: A:0.58, C:0.12, G:0.17, T:0.12 Consensus pattern (11 bp): AAAAAGTGCCA Left flanking sequence: Indices 11902950 -- 11903449 ATTAAAAAAAAAAAAATGTTTAAAAAGTCGATTTTTTCCAGGCATGCCAGCCAAAATGCGCAATT TGGCACTACAGCCTCAGACAAAGCGGTACTTCGCACAAAAAATGGCTTCAGGACATTCCACCGCA TGTTGTGCACACTTTGCTCCGTAAGAGCTCAGAAAAAAGCTCAAAAACCTCGAATTTCATTGGGA AAAACGCTCAAAAAATTCGAAAAAACGTCTAAATTTAGCGAAAATCTCAGATTCTGATTTTTTAA GAAGGCTAAGGCTTAGGCTAGACTTAGACTTTAGGCTCAGGCTTATCCCTAGGCTTAGGCTTAGG CTTTCGGCTTCTTCTTCTTCTTCTTTCTTAAAGAGAGGAAAAAAATCCCAGAAACTTCAATAATT CAGAAAAAAGAAAAAATACGGCGAAAAATGAGACAAGCCGGACAAAAAAAACAATTATGAATTTT TCTGAATTTTGTTAATTTTTGTAGTACATTACCACTTTTTTACTT Right flanking sequence: Indices 11903474 -- 11903973 TTTAGCTGAAATTAGGCATTTTTTGTAATTTTTCCGTCAAAAAATGTCCAAAAATCACCAATTTT GCTCTTTTTCAGGTCCATGTTTCGTATTTTTTTCAACTTTCAACCGGAAAAGTGCAAGAAATCAG TTTTCAATCGCTGAAACAATGAAAAATTGCAGATTTTAGCTGGAATTTGGCGAAATTTTAAGATT TTTGAGCTATTTTCTCCTTCTTTAAATCCAAAATCCACTAAAAATCTATTTTCCAGATTTCCTGA TCTGCCTGGCCGGACTTGGAGCCCCGGAGCTCGACCAAACTTTCGAAGAAGCTACCGATTCTAGC GAGTAAGCCTGAAACCTGAAACCAGTTAAAAATTAATTGTCAATTTTTTTCCAGCTACGTGGAGT CTCTTGGCGACACAAATGGAGCCCGTGAGGTGGCATTTGAGACTCTAAAGTCGACCCGTGAACAA CTTTGCTCGAAATTCCGACAATGTGTGACTGATGCTTTGTAGGAC Found at i:11909471 original size:11 final size:11 Alignment explanation
Indices: 11909451--11909472 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 11909441 TTATCCCTAA * 11909451 TTTTTTTCAGC 1 TTTATTTCAGC 11909462 TTTATTTCAGC 1 TTTATTTCAGC 11909473 ATCTTCTTTC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.14, C:0.18, G:0.09, T:0.59 Consensus pattern (11 bp): TTTATTTCAGC Left flanking sequence: Indices 11908951 -- 11909450 CTTACTCAATCTTCCAAGAAGAAGGCGGTAAAATTCAGAAGATTCGCCGCCTAAAATCACTTTAA ATAACTGTATTTGTAGGTATTTCTCACCACATCGCTGAAGTTCAGCTCTCGCTATCTCTATTCTC CTAAACTTCTCGCTCCTGCTGATGAGATTTTTGAATTCAGTTTTGAAAGGTGGCCGTTTCCCTGC TTTCAGGTCCCGAATCATCTTAACATCTTCGACTTTTTCCACATCTGCCATTCGTAATTCATCAT TTTTTCCTGAAAGTTGCCGATCTAATTCCCTTTTTGCAGTTTCCAAACGACGGTTTTCAGTTTCC AAAACTCCTTTCTCCCGTTTCAACTGCGTCCAACTCTGTTTCATCGTTTTCAGTTCTTCTTGTAC AGCCTAAAATATTATCTATTTCAGCAATTTCTTATCTCTATTATATACCTTGTACTTATCATTCA ACTTTCCCAACTTCTCAGAGTGCTCTCCATTAAGCTTATCCCTAA Right flanking sequence: Indices 11909473 -- 11909972 ATCTTCTTTCAAAAGTTTTGCATCGCTCACGTCCCTTGTCAGCTTCTCATTGTCTTGCAAGGCAC GTTTCAGGTCGGATGATAAGGATACACCAAGAGGCGTCGTCATCCTAAGCGGCGTAGACATGGCT TCCTGTTAAAAAATGTCACTTTGCCCAGAAAATTTTTGCATAGATTCCTTGGAGGGGTCCTACCC TTTTTAAAGCACAACAATATTTAATAACATTTATTATAGTATAAACAATTTAACTTTTCAGGATG ACGAGGATGGTCGGTATAGATCGATGGCGAGGATGGTCGGGATGCATCAATGACGAGGATGGTCG GGATTGACGGCTCGCGACAGGACCGGTACCTTCGAATCAATTACTATTTTTTTTCAGGTCATTTT TTATTTATTGTAGACCAATTTCGAAAATTAAACCCCGTAGGGCATTTTATTCTTCCAGATTCGTC GGCCCTCCGAGCAGCTCCAACAGCAACAACAACGGCTCCAACCTC Found at i:11909765 original size:26 final size:26 Alignment explanation
Indices: 11909729--11909801 Score: 111 Period size: 26 Copynumber: 2.8 Consensus size: 26 11909719 AACTTTTCAG * * 11909729 GATGACGAGGATGGTCGGTATAGATC 1 GATGACGAGGATGGTCGGGATACATC * * 11909755 GATGGCGAGGATGGTCGGGATGCATC 1 GATGACGAGGATGGTCGGGATACATC * 11909781 AATGACGAGGATGGTCGGGAT 1 GATGACGAGGATGGTCGGGAT 11909802 TGACGGCTCG Statistics Matches: 41, Mismatches: 6, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 26 41 1.00 ACGTcount: A:0.25, C:0.12, G:0.42, T:0.21 Consensus pattern (26 bp): GATGACGAGGATGGTCGGGATACATC Left flanking sequence: Indices 11909229 -- 11909728 GATCTAATTCCCTTTTTGCAGTTTCCAAACGACGGTTTTCAGTTTCCAAAACTCCTTTCTCCCGT TTCAACTGCGTCCAACTCTGTTTCATCGTTTTCAGTTCTTCTTGTACAGCCTAAAATATTATCTA TTTCAGCAATTTCTTATCTCTATTATATACCTTGTACTTATCATTCAACTTTCCCAACTTCTCAG AGTGCTCTCCATTAAGCTTATCCCTAATTTTTTTCAGCTTTATTTCAGCATCTTCTTTCAAAAGT TTTGCATCGCTCACGTCCCTTGTCAGCTTCTCATTGTCTTGCAAGGCACGTTTCAGGTCGGATGA TAAGGATACACCAAGAGGCGTCGTCATCCTAAGCGGCGTAGACATGGCTTCCTGTTAAAAAATGT CACTTTGCCCAGAAAATTTTTGCATAGATTCCTTGGAGGGGTCCTACCCTTTTTAAAGCACAACA ATATTTAATAACATTTATTATAGTATAAACAATTTAACTTTTCAG Right flanking sequence: Indices 11909802 -- 11910301 TGACGGCTCGCGACAGGACCGGTACCTTCGAATCAATTACTATTTTTTTTCAGGTCATTTTTTAT TTATTGTAGACCAATTTCGAAAATTAAACCCCGTAGGGCATTTTATTCTTCCAGATTCGTCGGCC CTCCGAGCAGCTCCAACAGCAACAACAACGGCTCCAACCTCCCCAACCGCTTCAACAGTAACGAC GAAGAAACGAATAATCTATAAATGTATTGTAATCATTCTGTCCCTTTATCTCCAAAAAATTCCAG TTTTGAAGGCATACGACACGTTTTGTGAAGTTCTCGGTGACGATTTCATGGAATATCGGGAATTT GACTTCTGGTACTATAAAATTGGAAATGGAGATGCTAATTTGACCTGTAAAATGAGGTTTTTCAA TTTTAAAGTGATTATTTCCATATAATAACTTTCAGCTACAACCCAAAAAGTCCGATTTTCACCGA TTTTCCCGACACGGTTGTCCATACAGTTTTGGAAAAGCTATTGCC Found at i:11911833 original size:12 final size:12 Alignment explanation
Indices: 11911807--11911834 Score: 35 Period size: 12 Copynumber: 2.3 Consensus size: 12 11911797 TTAAAACTAG * 11911807 ATTTTAATCGCA 1 ATTTAAATCGCA * * 11911819 ATTTAAATTGTA 1 ATTTAAATCGCA 11911831 ATTT 1 ATTT 11911835 TTGCAGTTTT Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50 Consensus pattern (12 bp): ATTTAAATCGCA Left flanking sequence: Indices 11911307 -- 11911806 AAAATCGACATTTTTTGCTGAGTTTTTTTGTTAAAACGATATTTTTTTGTTCTACATTTTGATTC GGTGCAGTTTTTTTTTTTATATTCCGCAACTTTGTTTTCTAATAAATTCTTTTTTATGTCATTAC CCAGTTTTATTTTAAAAAACAAGTATTTTTATTGTTTTTCTCATATTTTCATGAAAAAACTAAAT GAAAATCGGGAAAAAGCTTCAAACACAATTATTTTCGACTTTTCTTCAGAATTCTCTATTTCGCC ATGTTTTTTAGCATATTTCATAGCGATTTTGTGTCAAAATATAGAAAATCCACTTGGTTTATCTG AAAATAACATTTATTTCAGCTGAAACATGCCCAATCCTGATTAAAAAGTTCTCGGGCTACTGTAG TCGGCGAAGTACGCAATACACTTCGTGTTGCCTATTGCGTAGAATACACAAGATTTCACGCGCAA ACATTTTTTGAAATTGTTTTTTGATTTGAAAAACGTTAAAACTAG Right flanking sequence: Indices 11911835 -- 11912334 TTGCAGTTTTAAACGAAAAAAATGCCGAAATCCATCGCTCAATCTCGACGCGATGAAAAATCCAA CGAATTAAAGGATTTGATTGAAAAGTATGTTTTTTTTTCTGCCATTCTTAAAAAGTTTATTTTTA TATCTTTCAGGAAACGGGTCCAAAAGACAAATCTCCTGCGAAACAGCAAATCTGCCACCCGAGCA TTCATTCTGTCCTTGTATCTCCAAAAAATTCCAGTTTTCGAGGCATACAGCAAGTTTTGTGGGGT TCTCGGAGACGAATTGATGGAATATCGGGAATTTGACTTGTGGTACTATCAAATTGGAAATGGAG ATGCTGATTTGGACTGTGAAATGAGGTAATTATCATAATTGGCAATTCGTAGTACTTTATAACTT TCAGCTGGGATCCAGAAAGCCGCGGTCTCTCCGATATGCCACTCGCAATTGTTCACAATATTTTG GAAAATATTCCTCCACTGGAAAGGTATATCCTACTATGAAATCAG Found at i:11913023 original size:10 final size:11 Alignment explanation
Indices: 11913002--11913023 Score: 37 Period size: 10 Copynumber: 2.1 Consensus size: 11 11912992 TTCACGATTC 11913002 AAGATGCAGAG 1 AAGATGCAGAG 11913013 AAGAT-CAGAG 1 AAGATGCAGAG 11913023 A 1 A 11913024 TGTATGCTAA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 6 0.55 11 5 0.45 ACGTcount: A:0.50, C:0.09, G:0.32, T:0.09 Consensus pattern (11 bp): AAGATGCAGAG Left flanking sequence: Indices 11912502 -- 11913001 AAGTTTAGAAAAAGTGATGAAGATGAGGATAGTAACTCATATTTGGAAAATGCTATGGATCAATT GGAGACTATCACGACAAATAATAAATTGGAAGAGTTCGAATTAAGATTTGGAAATGATCCGGACG AAAGAAATCGGTGGGAGTTGAATGGGAAATTCCGAATGATGTTCTTATTTTTGCGTGTTCAGTTA AACAGCGTCCGAAAATTCTCGATCGGAATGTTAAAACCTCATGATGCGCAATGGATGTTCTTTCG CTTCAAGCCAAGAGTTCTCGAGGAAATTGAAATTCGACATTTGACTGTCAAAGACACAGAATTTG ACGATGATGAAGTATTTGAGGAAAATATGGAAATTTACAAGCCGCTCACCGAGCTCGAGCACTGG CAGAAAGCGAAAAAAAGTCAAAATCGGAGTGGATGATTCGATTCATTTTCCAATTGAGACGTTGT CGCATTTTTCGCATTTCGAGATTCGTTTGAAGAAATTCACGATTC Right flanking sequence: Indices 11913024 -- 11913523 TGTATGCTAAAACACCGGGGATTTTCGTTATATATTCTGTTTTTTTTTTCAGATCGTCCAGAATT CCCCTTCTTTTCAATCCGGAATCGTCAGAAGCCACATCAAAAAGCCCTACCAATTTGTGAAGATT TTCAACCGAAACGTTGCACAACAAAGTGGCTCAATCATCTATAAAACAATGGGATCTCGCTTCAA AATCAATTTTGGATATGACTCGTTTGAGATTAAAAAAGAAAACAATAATTAATGTCCGGCCTTTG TTAAGTTTTTGTTTAAAGTTTAAACAATAAAATTGTTAGTTCGATTTTTTTTTTGATATTTCTTC TTATTATATTTGAGTTCATTCATATTTCCCACAGTGGTACTTTCGAAACTTGTTATTTTTCGAAA AAAAAAACACGGCGTTCCGACTGTTCTTTAGCAAATTTTAGCTCGTTTTTCGGCCTAATTTGAGT GAACTTAAAATTAAAATAAGCATGAAAATTTTACAGAATTATACC Found at i:11915871 original size:13 final size:13 Alignment explanation
Indices: 11915855--11915882 Score: 35 Period size: 12 Copynumber: 2.2 Consensus size: 13 11915845 AAAAAGAACA 11915855 TTAAAATTGAATT 1 TTAAAATTGAATT * * 11915868 TT-AATTTGGATT 1 TTAAAATTGAATT 11915880 TTA 1 TTA 11915883 TCAAAATTCC Statistics Matches: 12, Mismatches: 2, Indels: 2 0.75 0.12 0.12 Matches are distributed among these distances: 12 10 0.83 13 2 0.17 ACGTcount: A:0.36, C:0.00, G:0.11, T:0.54 Consensus pattern (13 bp): TTAAAATTGAATT Left flanking sequence: Indices 11915355 -- 11915854 GATTAGAGATATACTTTAGAAAATTGATTATTTTCAATAAATCTGATTTTTTTTTCCAGATTCAC ATGAAATCCGATCACTTTCAATCCGCAATCATCAGATGCTCTACAATTAAGGCTTCTCAACTCGC GATGCTTTTCAATCATGAGCAATCAGACGAAGAACATGCTCCGTTCGTCTATGAAACCGAGACGT CACGCTTCAAAATTAGGCTCACCTTTGGCTATTTGGAAATTAAAAAAGAACAGTGATCTCGTGTT GTTTCCATTTTTTGAAATTCTGTTAAACATTGTTACTTGTTGATGAATTTGTTTTTTTTTTTCAG ACTTTCTAAATTTAAAAATTAGTCGAGATTCATCAAAAATACAAGTTTTAAAGCAATATTCACAA AATAAAATAATCAGAAGCAATTTAGAAGTCGATTTGCATGACGACCGGAGCATGGTCGCTTCCCA TCACCGAGCTCATGATATCACTGCGTTTGACCTGAAAAAAGAACA Right flanking sequence: Indices 11915883 -- 11916382 TCAAAATTCCAGTGGAAAAATTGAATTTCCACTTGGATTACGTCGAAATTTCAGTAAAATTCTAA ATTTTTAAGTGGATTTCATGGAAATCTTCTGAAAAATTTCAATTCCCCGGTGGATTTTGTCTAAA TTTTTTTGGAAAATCAAATTTTTATGGCAAATTCCATCAAAATTTCGGTATCCACCGGGATTTTA CGGGAAAAAATCCCAGACATATTGCATTTTTTGCCCATTTTTTCAATTTTCCACAGCTTCCAGAC GAGACCTTATTCATAATTCGATTGCTGACAACATAATAATCCAATCTCCATCCAACATCTTTCTG CCGAGAATTCGCCAGATAACTCCAAAATGAGTACTTCTTCTCGTCGGGATGCATGGCTCTGAAGG TGTCGGTGAATCCCAACTCGAGCATCTCACTGAACCATCCACGTTCTTGATCTGTGAATCCCGCG GTTTTATTTCGATTTGATTCTGGATTCTGAAAGGATCAGGGAGTT Found at i:11918768 original size:16 final size:16 Alignment explanation
Indices: 11918743--11918776 Score: 54 Period size: 16 Copynumber: 2.1 Consensus size: 16 11918733 GTCGTCGTTC * 11918743 AGGAGGTTTCGGGAAG 1 AGGAGATTTCGGGAAG * 11918759 AGGAGATTTCGGGGAG 1 AGGAGATTTCGGGAAG 11918775 AG 1 AG 11918777 AAGCTTACCT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.26, C:0.06, G:0.50, T:0.18 Consensus pattern (16 bp): AGGAGATTTCGGGAAG Left flanking sequence: Indices 11918243 -- 11918742 TTTTTCCATTTCAAGCTGAAAATATGAGGAATTAGTCCAAAATAAGACCGCGAAGAGTGTTGAAA CTTGAATTTTCAGTTGTAAGCTCACATTGGGCTGCGCATAGCCCAGGATTCAAAACTTGCTCGAA CCGAAGCCGTTCCTTCAAGCTTCTAGCCTCAACGCTTGCCATCAGATTGACCCCAAATGAAGATT CGAAATAAAAAAATAGAGCATATATATTTATGATAACGATTTCATGGGTTTATTATTATTGAGAT CATTAAAGATCAAACAAGTAACAAAGTACCGATATGAAAATTAGTTGTTTCTGTTTTGAGCCAAG TTGACGCGTAGAGCTCTTCCGTTGAAATCGACTCCGTTGAATTGGTCGACGGCTCTCTGGGCAGC GGCCTCCTCGGTGAACTCGACGAAGGCGAATCCACGTGGACGTCCGGTCTCGCGGTCGCAAACGA TTCTGAAAATAGAGATTCATATTGAGAGTTAACGGGTCGTCGTTC Right flanking sequence: Indices 11918777 -- 11919276 AAGCTTACCTGACGTTGCTGACGTTTCCAGCCTGGCTGAAGTAGTTGCCAAGGTCGTCCTCGGTA GTTTGGAATGGAGCGTTTCCGACTGAAAAATGCATTAAAATTATTAAAAACTCAAATTATCTCAG CCTAATCAAATACAATAAATAGAAAAACGCCTGGAGAAAAATAAAAATTTTAGGCCAGACTTTAA ATTCGGCTTTTCTCGATTAAAATCTGCTTTTAAAGCTGAATATTCCAGTTTTCTACTTGAATAAT TTACAATTAACAAAACTAACCGTAAACAGAGAATCCAGACATGACGATTTTAGGCCGGAGCGTAA ATATGTGTGATTCGAATCGTTTTCGCTTGCCTCCTCCGACTCGTGGGAAACCGTGCGGCACTTGC GGTAAAAGTGTGCCAGCCTTGCGTTCGCGCTCCGCCCCCTTTAGTCATTTCAGCGTTAGCAAACG CTGCGTCTTTTATTCCTCATTCTCTGTCATTTTTCATAGCAATTG Found at i:11921986 original size:31 final size:30 Alignment explanation
Indices: 11921932--11922008 Score: 89 Period size: 30 Copynumber: 2.6 Consensus size: 30 11921922 TGAAAAAAAA * * * 11921932 AATTTTTGCTTA-TTTCTGAGAAAAAGGCC 1 AATTTTTGGTTATTTTCTAAGAAAAAAGCC * * * 11921961 AATTTTTTGGTTATTTTCTATGAAAAAATCT 1 AA-TTTTTGGTTATTTTCTAAGAAAAAAGCC * 11921992 AATTTTTGGTCATTTTC 1 AATTTTTGGTTATTTTC 11922009 CGGGAAAAAT Statistics Matches: 39, Mismatches: 7, Indels: 3 0.80 0.14 0.06 Matches are distributed among these distances: 29 2 0.05 30 23 0.59 31 14 0.36 ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48 Consensus pattern (30 bp): AATTTTTGGTTATTTTCTAAGAAAAAAGCC Left flanking sequence: Indices 11921432 -- 11921931 TCTGATGATCTCGGATCAGTTTCTCGTCAAAAGTCTTCACAATTGAGTCACAACTCGTCGAAATC GATTGCATTTGGACCGATGGAACGTGTGGAAGTTGCTTTAAATTCTCCAAAAGCGCGACAATCGT TTGATCAATGAATTCAGGAGTGTTGAAGTTCGAAAGAGCGGCGAGCGGCTTTATGTGTAGTTTGT AGTCCGGGATGAAGTAGTCAAAGTAGTCGTGGAGGGGCAGATCTGGAAGAAAAATTGGCATTTTT TAGCGGGAAATTCGAATTTTCAAGATTTTTTGCCGAAAATAAGCCGTTTTTTCGCAAATTTCCGG GGGAAAAATCGAAATTTCCATACCATCTGAAACTTCTTGATTCAAAGCGATCGCCGTCTCGTACA GCCAACATCTGGAGACATTTCGAATCGTATATCCACCACCGCCAACTAACAGAAGCGGCACGTTG AAGCTTTTCATGTATTCCACGCATTTTCCGTGTCCTGAAAAAAAA Right flanking sequence: Indices 11922009 -- 11922508 CGGGAAAAATTGGAGTTTTTTTCCGTGATTTTTCAGATGTTTTTCGTTAAAAATACGTTTTAAAA AATTGTTTTTGTCATAGAAAACTCATTATCTGTTTTTTTTTTTGTGAAAAAGGCAATTTTTAGCA TATTTTCCGAGAAAAACTGAATTTTTTCCGTTTTTTCTGATGTTTTTCGTGAAAAAATCCGATTT TTCAGTAATTTTCATCGAAAAAATCCCATTTTTCGGTAGGTTTCCTCTCAATTTTTATTTAAAAT TCGTGATTTTGCTATTGTTATTCCGAATTACTTCACCATTCCTATTTAAAGGCGCACAGCCGGGT TCGGATGGGTCTCGCCGCGAAAAGCATTATTTTAACGACTTTTCTTGATTTTTTGAGTGTTAAAT CTAGTGAAAATGGCCCAAAATCACAAAATTTCGCCAAAAACTAAGAAATTCCGATATATTCAGTG AGAAAAGCATTTTTTAGCACTTTTTCCGATAAAAATCCCATTTTT Found at i:11922028 original size:30 final size:30 Alignment explanation
Indices: 11921964--11922028 Score: 74 Period size: 30 Copynumber: 2.2 Consensus size: 30 11921954 AAAGGCCAAT * * * * 11921964 TTTTTGGTTATTTTCTATGAAAAAATCTAA 1 TTTTTGGTCATTTTCCAGGAAAAAATCGAA * * * * 11921994 TTTTTGGTCATTTTCCGGGAAAAATTGGAG 1 TTTTTGGTCATTTTCCAGGAAAAAATCGAA 11922024 TTTTT 1 TTTTT 11922029 TTCCGTGATT Statistics Matches: 27, Mismatches: 8, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.26, C:0.08, G:0.17, T:0.49 Consensus pattern (30 bp): TTTTTGGTCATTTTCCAGGAAAAAATCGAA Left flanking sequence: Indices 11921464 -- 11921963 GTCTTCACAATTGAGTCACAACTCGTCGAAATCGATTGCATTTGGACCGATGGAACGTGTGGAAG TTGCTTTAAATTCTCCAAAAGCGCGACAATCGTTTGATCAATGAATTCAGGAGTGTTGAAGTTCG AAAGAGCGGCGAGCGGCTTTATGTGTAGTTTGTAGTCCGGGATGAAGTAGTCAAAGTAGTCGTGG AGGGGCAGATCTGGAAGAAAAATTGGCATTTTTTAGCGGGAAATTCGAATTTTCAAGATTTTTTG CCGAAAATAAGCCGTTTTTTCGCAAATTTCCGGGGGAAAAATCGAAATTTCCATACCATCTGAAA CTTCTTGATTCAAAGCGATCGCCGTCTCGTACAGCCAACATCTGGAGACATTTCGAATCGTATAT CCACCACCGCCAACTAACAGAAGCGGCACGTTGAAGCTTTTCATGTATTCCACGCATTTTCCGTG TCCTGAAAAAAAAAATTTTTGCTTATTTCTGAGAAAAAGGCCAAT Right flanking sequence: Indices 11922029 -- 11922528 TTCCGTGATTTTTCAGATGTTTTTCGTTAAAAATACGTTTTAAAAAATTGTTTTTGTCATAGAAA ACTCATTATCTGTTTTTTTTTTTGTGAAAAAGGCAATTTTTAGCATATTTTCCGAGAAAAACTGA ATTTTTTCCGTTTTTTCTGATGTTTTTCGTGAAAAAATCCGATTTTTCAGTAATTTTCATCGAAA AAATCCCATTTTTCGGTAGGTTTCCTCTCAATTTTTATTTAAAATTCGTGATTTTGCTATTGTTA TTCCGAATTACTTCACCATTCCTATTTAAAGGCGCACAGCCGGGTTCGGATGGGTCTCGCCGCGA AAAGCATTATTTTAACGACTTTTCTTGATTTTTTGAGTGTTAAATCTAGTGAAAATGGCCCAAAA TCACAAAATTTCGCCAAAAACTAAGAAATTCCGATATATTCAGTGAGAAAAGCATTTTTTAGCAC TTTTTCCGATAAAAATCCCATTTTTAGGTAGGTTTCCTCTCAATT Found at i:11922052 original size:12 final size:11 Alignment explanation
Indices: 11922025--11922052 Score: 33 Period size: 11 Copynumber: 2.5 Consensus size: 11 11922015 AAATTGGAGT * 11922025 TTTTTTCCGTG 1 TTTTTTCAGTG * 11922036 ATTTTTCAGATG 1 TTTTTTCAG-TG 11922048 TTTTT 1 TTTTT 11922053 CGTTAAAAAT Statistics Matches: 13, Mismatches: 3, Indels: 1 0.76 0.18 0.06 Matches are distributed among these distances: 11 7 0.54 12 6 0.46 ACGTcount: A:0.11, C:0.11, G:0.14, T:0.64 Consensus pattern (11 bp): TTTTTTCAGTG Left flanking sequence: Indices 11921525 -- 11922024 GAAGTTGCTTTAAATTCTCCAAAAGCGCGACAATCGTTTGATCAATGAATTCAGGAGTGTTGAAG TTCGAAAGAGCGGCGAGCGGCTTTATGTGTAGTTTGTAGTCCGGGATGAAGTAGTCAAAGTAGTC GTGGAGGGGCAGATCTGGAAGAAAAATTGGCATTTTTTAGCGGGAAATTCGAATTTTCAAGATTT TTTGCCGAAAATAAGCCGTTTTTTCGCAAATTTCCGGGGGAAAAATCGAAATTTCCATACCATCT GAAACTTCTTGATTCAAAGCGATCGCCGTCTCGTACAGCCAACATCTGGAGACATTTCGAATCGT ATATCCACCACCGCCAACTAACAGAAGCGGCACGTTGAAGCTTTTCATGTATTCCACGCATTTTC CGTGTCCTGAAAAAAAAAATTTTTGCTTATTTCTGAGAAAAAGGCCAATTTTTTGGTTATTTTCT ATGAAAAAATCTAATTTTTGGTCATTTTCCGGGAAAAATTGGAGT Right flanking sequence: Indices 11922053 -- 11922552 CGTTAAAAATACGTTTTAAAAAATTGTTTTTGTCATAGAAAACTCATTATCTGTTTTTTTTTTTG TGAAAAAGGCAATTTTTAGCATATTTTCCGAGAAAAACTGAATTTTTTCCGTTTTTTCTGATGTT TTTCGTGAAAAAATCCGATTTTTCAGTAATTTTCATCGAAAAAATCCCATTTTTCGGTAGGTTTC CTCTCAATTTTTATTTAAAATTCGTGATTTTGCTATTGTTATTCCGAATTACTTCACCATTCCTA TTTAAAGGCGCACAGCCGGGTTCGGATGGGTCTCGCCGCGAAAAGCATTATTTTAACGACTTTTC TTGATTTTTTGAGTGTTAAATCTAGTGAAAATGGCCCAAAATCACAAAATTTCGCCAAAAACTAA GAAATTCCGATATATTCAGTGAGAAAAGCATTTTTTAGCACTTTTTCCGATAAAAATCCCATTTT TAGGTAGGTTTCCTCTCAATTTTTACTTAAAATTCGTGATTTTGC Found at i:11923101 original size:35 final size:34 Alignment explanation
Indices: 11923051--11923241 Score: 192 Period size: 35 Copynumber: 5.5 Consensus size: 34 11923041 CGGTTTGCCG * * * 11923051 ATTTGCAGATATGCCGGAAATGGTAAATTCCGGCA 1 ATTTGCCGATTTGCCGGAAAT-TTAAATTCCGGCA * ** * 11923086 ATTTGCCGATCTGCCGGAAATTTTCATTATCGGCA 1 ATTTGCCGATTTGCCGGAAATTTAAATT-CCGGCA * ** 11923121 ATTTGACGATTTGCCGGAAATTTAAATTCCGAAA 1 ATTTGCCGATTTGCCGGAAATTTAAATTCCGGCA ** * ** * * 11923155 ATTTGCCGTGTTTCCGGCAAATTCCAATTCCTGCC 1 ATTTGCCGATTTGCCGG-AAATTTAAATTCCGGCA * ** 11923190 ATTCGCACATTTGCCGGAAATTTCAAATTCCGGCA 1 ATTTGCCGATTTGCCGGAAATTT-AAATTCCGGCA * * 11923225 ATTTGCCGTTTTTCCGG 1 ATTTGCCGATTTGCCGG 11923242 GAAACTCGGC Statistics Matches: 115, Mismatches: 38, Indels: 6 0.72 0.24 0.04 Matches are distributed among these distances: 34 25 0.22 35 90 0.78 ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32 Consensus pattern (34 bp): ATTTGCCGATTTGCCGGAAATTTAAATTCCGGCA Left flanking sequence: Indices 11922551 -- 11923050 GCTATTATTATTCCGAATTTCTCCACAATTCCTACTTAAAGGCGCACAGACGAGTTCGGATGGGT CTCGCCGCGAAAATCACCATTTTAACGAATTTTCTTGATTTTTTGTGAAAATTTTAGTTTAAACT AGCGAAAATGATCCAAAATCGAGAATTTTTGCCGAAAACTGAGAAAATCTTCTCCACGAGGAGTA CACGAGAGCTTCTTCGTAAATCGACACACACAAACCATAAGTAGTCAAATTGAATACTCCTAGCC GATCTCCTGCCAGTGAATCGGCACCACATTGGAGCACAACTGCTTCTGGTTGAAATCTTGCCATA ACTTCTCCCATAATTGTTCTGAAAATCCGTTCATAAGTGACGTCATCGACTCCATCACGAAGTGG AACATTCAGAGCATAGTACTTGCCACTTCCAGCGCCAACGTCTGAAAAAAACTTTTTCATAAATT TTTTGAAATAAATGTAGCTATTTTCGGCAATTTGCCGGTTTGCCG Right flanking sequence: Indices 11923242 -- 11923741 GAAACTCGGCTAATCGACATTTTGCCGGATAATTTCAATTCCGGCAATTTTCCAAATTTGTCGGA AATTTTCATTACCGACAAATGGTCGATTTTCCAGCAAATTTCAATTCCGACAATTTGCCAGAAAT TGTCAATTCCGGCAACTTGACGATTTGCCGGAAATTAAAAACTCCGGCAATATGCCGATTTGCCG GAAATGCTAAATTCCGGCAATTTGCCGTTTTTCCAGAAAATTTAATTTCCGGCAAATTGCCAAAA ATTTAAATTCCGGCAGTTTGCCGGAAAATTGTCGATTTTCCGGCAAATTTGGCAAATCGGCAATT TCCCGGAAAATTTCAATTCCTGCAATTTGCCAAAAACTTAAATTCCGGCAACTCGCCGGAAATTT TCTATTCAGACAATTTGCCGATTTCCGGCAAAAATTTGCCAGTTTGCCAATTTGCCGGAAAATTA AAATTAGCTGAAATTAAATTCGCCAAAAAATCTTATTTTATAGTT Found at i:11923233 original size:70 final size:69 Alignment explanation
Indices: 11923046--11923245 Score: 224 Period size: 69 Copynumber: 2.9 Consensus size: 69 11923036 TTTGCCGGTT * * * * * * * * 11923046 TGCCGATTTGCAGATATGCCGGAAATGGTAAATTCCGGCAATTTGCCGATCTGCCGGAAATTTTC 1 TGCC-ATTTGCACATTTGCCGGAAAT-TTAAATTCCGGCAATTTGCCGTTTTTCCGGAAAATTCC * * 11923111 ATTATC 64 AATACC * * ** * * 11923117 GGCAATTTG-ACGATTTGCCGGAAATTTAAATTCCGAAAATTTGCCGTGTTTCCGGCAAATTCCA 1 TGCCATTTGCAC-ATTTGCCGGAAATTTAAATTCCGGCAATTTGCCGTTTTTCCGGAAAATTCCA * 11923181 ATTCC 65 ATACC * * 11923186 TGCCATTCGCACATTTGCCGGAAATTTCAAATTCCGGCAATTTGCCGTTTTTCCGGGAAA 1 TGCCATTTGCACATTTGCCGGAAATTT-AAATTCCGGCAATTTGCCGTTTTTCCGGAAAA 11923246 CTCGGCTAAT Statistics Matches: 102, Mismatches: 24, Indels: 7 0.77 0.18 0.05 Matches are distributed among these distances: 69 53 0.52 70 47 0.46 71 2 0.02 ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32 Consensus pattern (69 bp): TGCCATTTGCACATTTGCCGGAAATTTAAATTCCGGCAATTTGCCGTTTTTCCGGAAAATTCCAA TACC Left flanking sequence: Indices 11922546 -- 11923045 ATTTTGCTATTATTATTCCGAATTTCTCCACAATTCCTACTTAAAGGCGCACAGACGAGTTCGGA TGGGTCTCGCCGCGAAAATCACCATTTTAACGAATTTTCTTGATTTTTTGTGAAAATTTTAGTTT AAACTAGCGAAAATGATCCAAAATCGAGAATTTTTGCCGAAAACTGAGAAAATCTTCTCCACGAG GAGTACACGAGAGCTTCTTCGTAAATCGACACACACAAACCATAAGTAGTCAAATTGAATACTCC TAGCCGATCTCCTGCCAGTGAATCGGCACCACATTGGAGCACAACTGCTTCTGGTTGAAATCTTG CCATAACTTCTCCCATAATTGTTCTGAAAATCCGTTCATAAGTGACGTCATCGACTCCATCACGA AGTGGAACATTCAGAGCATAGTACTTGCCACTTCCAGCGCCAACGTCTGAAAAAAACTTTTTCAT AAATTTTTTGAAATAAATGTAGCTATTTTCGGCAATTTGCCGGTT Right flanking sequence: Indices 11923246 -- 11923745 CTCGGCTAATCGACATTTTGCCGGATAATTTCAATTCCGGCAATTTTCCAAATTTGTCGGAAATT TTCATTACCGACAAATGGTCGATTTTCCAGCAAATTTCAATTCCGACAATTTGCCAGAAATTGTC AATTCCGGCAACTTGACGATTTGCCGGAAATTAAAAACTCCGGCAATATGCCGATTTGCCGGAAA TGCTAAATTCCGGCAATTTGCCGTTTTTCCAGAAAATTTAATTTCCGGCAAATTGCCAAAAATTT AAATTCCGGCAGTTTGCCGGAAAATTGTCGATTTTCCGGCAAATTTGGCAAATCGGCAATTTCCC GGAAAATTTCAATTCCTGCAATTTGCCAAAAACTTAAATTCCGGCAACTCGCCGGAAATTTTCTA TTCAGACAATTTGCCGATTTCCGGCAAAAATTTGCCAGTTTGCCAATTTGCCGGAAAATTAAAAT TAGCTGAAATTAAATTCGCCAAAAAATCTTATTTTATAGTTAATT Found at i:11923377 original size:27 final size:27 Alignment explanation
Indices: 11923332--11923390 Score: 81 Period size: 27 Copynumber: 2.2 Consensus size: 27 11923322 CAAATGGTCG * 11923332 ATTTTCCAGCAAATTTCAATTCCGACA 1 ATTTGCCAGCAAATTTCAATTCCGACA * 11923359 ATTTGCCAG-AAATTGTCAATTCCGGCA 1 ATTTGCCAGCAAATT-TCAATTCCGACA * 11923386 ACTTG 1 ATTTG 11923391 ACGATTTGCC Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 26 5 0.18 27 23 0.82 ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32 Consensus pattern (27 bp): ATTTGCCAGCAAATTTCAATTCCGACA Left flanking sequence: Indices 11922832 -- 11923331 CACCACATTGGAGCACAACTGCTTCTGGTTGAAATCTTGCCATAACTTCTCCCATAATTGTTCTG AAAATCCGTTCATAAGTGACGTCATCGACTCCATCACGAAGTGGAACATTCAGAGCATAGTACTT GCCACTTCCAGCGCCAACGTCTGAAAAAAACTTTTTCATAAATTTTTTGAAATAAATGTAGCTAT TTTCGGCAATTTGCCGGTTTGCCGATTTGCAGATATGCCGGAAATGGTAAATTCCGGCAATTTGC CGATCTGCCGGAAATTTTCATTATCGGCAATTTGACGATTTGCCGGAAATTTAAATTCCGAAAAT TTGCCGTGTTTCCGGCAAATTCCAATTCCTGCCATTCGCACATTTGCCGGAAATTTCAAATTCCG GCAATTTGCCGTTTTTCCGGGAAACTCGGCTAATCGACATTTTGCCGGATAATTTCAATTCCGGC AATTTTCCAAATTTGTCGGAAATTTTCATTACCGACAAATGGTCG Right flanking sequence: Indices 11923391 -- 11923890 ACGATTTGCCGGAAATTAAAAACTCCGGCAATATGCCGATTTGCCGGAAATGCTAAATTCCGGCA ATTTGCCGTTTTTCCAGAAAATTTAATTTCCGGCAAATTGCCAAAAATTTAAATTCCGGCAGTTT GCCGGAAAATTGTCGATTTTCCGGCAAATTTGGCAAATCGGCAATTTCCCGGAAAATTTCAATTC CTGCAATTTGCCAAAAACTTAAATTCCGGCAACTCGCCGGAAATTTTCTATTCAGACAATTTGCC GATTTCCGGCAAAAATTTGCCAGTTTGCCAATTTGCCGGAAAATTAAAATTAGCTGAAATTAAAT TCGCCAAAAAATCTTATTTTATAGTTAATTTTCTGAATTTTTTTTTAATTTTAAAAATTTTTGAA AAATTTATTTTTCGATTTTCCCTCAAAAGCATCGAAAAAACGACATTTTTTCCAAAAAAAAAATC GAATTTTCAGCTAATATTAATTTGCCGATTTCCGGCAAATTTTTT Found at i:11923497 original size:35 final size:35 Alignment explanation
Indices: 11923359--11923497 Score: 159 Period size: 35 Copynumber: 4.0 Consensus size: 35 11923349 AATTCCGACA * * * * 11923359 ATTTGCCAGAAATTGTCAATTCCGGCAACTTGACG 1 ATTTGCCAGAAATTATAAATTCCGGCAATTTGCCG * * * * 11923394 ATTTGCCGGAAATTAAAAACTCCGGCAATATGCCG 1 ATTTGCCAGAAATTATAAATTCCGGCAATTTGCCG * ** 11923429 ATTTGCCGGAAATGCTAAATTCCGGCAATTTGCCG 1 ATTTGCCAGAAATTATAAATTCCGGCAATTTGCCG * * * * * * 11923464 TTTTTCCAGAAAATTTAATTTCCGGCAAATTGCC 1 ATTTGCCAGAAATTATAAATTCCGGCAATTTGCC 11923498 AAAAATTTAA Statistics Matches: 83, Mismatches: 21, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 35 83 1.00 ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29 Consensus pattern (35 bp): ATTTGCCAGAAATTATAAATTCCGGCAATTTGCCG Left flanking sequence: Indices 11922859 -- 11923358 GTTGAAATCTTGCCATAACTTCTCCCATAATTGTTCTGAAAATCCGTTCATAAGTGACGTCATCG ACTCCATCACGAAGTGGAACATTCAGAGCATAGTACTTGCCACTTCCAGCGCCAACGTCTGAAAA AAACTTTTTCATAAATTTTTTGAAATAAATGTAGCTATTTTCGGCAATTTGCCGGTTTGCCGATT TGCAGATATGCCGGAAATGGTAAATTCCGGCAATTTGCCGATCTGCCGGAAATTTTCATTATCGG CAATTTGACGATTTGCCGGAAATTTAAATTCCGAAAATTTGCCGTGTTTCCGGCAAATTCCAATT CCTGCCATTCGCACATTTGCCGGAAATTTCAAATTCCGGCAATTTGCCGTTTTTCCGGGAAACTC GGCTAATCGACATTTTGCCGGATAATTTCAATTCCGGCAATTTTCCAAATTTGTCGGAAATTTTC ATTACCGACAAATGGTCGATTTTCCAGCAAATTTCAATTCCGACA Right flanking sequence: Indices 11923498 -- 11923997 AAAAATTTAAATTCCGGCAGTTTGCCGGAAAATTGTCGATTTTCCGGCAAATTTGGCAAATCGGC AATTTCCCGGAAAATTTCAATTCCTGCAATTTGCCAAAAACTTAAATTCCGGCAACTCGCCGGAA ATTTTCTATTCAGACAATTTGCCGATTTCCGGCAAAAATTTGCCAGTTTGCCAATTTGCCGGAAA ATTAAAATTAGCTGAAATTAAATTCGCCAAAAAATCTTATTTTATAGTTAATTTTCTGAATTTTT TTTTAATTTTAAAAATTTTTGAAAAATTTATTTTTCGATTTTCCCTCAAAAGCATCGAAAAAACG ACATTTTTTCCAAAAAAAAAATCGAATTTTCAGCTAATATTAATTTGCCGATTTCCGGCAAATTT TTTTCAGGCAATTTGCAGATTTGTCGGAAATTTAAAATTTAAATTTAAAAAATCGAAGAGATCTC TCTTCCCGTACCCTTTAAATCTCCAGTTCCAGGGAAATATTCTCC Found at i:11923507 original size:26 final size:27 Alignment explanation
Indices: 11923473--11923550 Score: 87 Period size: 26 Copynumber: 2.8 Consensus size: 27 11923463 GTTTTTCCAG 11923473 AAAATTTAATTTCCGGCAAATTGCC-A 1 AAAATTTAATTTCCGGCAAATTGCCGA * ** * 11923499 AAAATTTAAATTCCGGCAGTTTGCCGG 1 AAAATTTAATTTCCGGCAAATTGCCGA * 11923526 AAAATTGTCGATTTTCCGGCAAATT 1 AAAATT-T--AATTTCCGGCAAATT 11923551 TGGCAAATCG Statistics Matches: 40, Mismatches: 8, Indels: 4 0.77 0.15 0.08 Matches are distributed among these distances: 26 22 0.55 27 6 0.15 28 1 0.03 30 11 0.28 ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32 Consensus pattern (27 bp): AAAATTTAATTTCCGGCAAATTGCCGA Left flanking sequence: Indices 11922973 -- 11923472 CGCCAACGTCTGAAAAAAACTTTTTCATAAATTTTTTGAAATAAATGTAGCTATTTTCGGCAATT TGCCGGTTTGCCGATTTGCAGATATGCCGGAAATGGTAAATTCCGGCAATTTGCCGATCTGCCGG AAATTTTCATTATCGGCAATTTGACGATTTGCCGGAAATTTAAATTCCGAAAATTTGCCGTGTTT CCGGCAAATTCCAATTCCTGCCATTCGCACATTTGCCGGAAATTTCAAATTCCGGCAATTTGCCG TTTTTCCGGGAAACTCGGCTAATCGACATTTTGCCGGATAATTTCAATTCCGGCAATTTTCCAAA TTTGTCGGAAATTTTCATTACCGACAAATGGTCGATTTTCCAGCAAATTTCAATTCCGACAATTT GCCAGAAATTGTCAATTCCGGCAACTTGACGATTTGCCGGAAATTAAAAACTCCGGCAATATGCC GATTTGCCGGAAATGCTAAATTCCGGCAATTTGCCGTTTTTCCAG Right flanking sequence: Indices 11923551 -- 11924050 TGGCAAATCGGCAATTTCCCGGAAAATTTCAATTCCTGCAATTTGCCAAAAACTTAAATTCCGGC AACTCGCCGGAAATTTTCTATTCAGACAATTTGCCGATTTCCGGCAAAAATTTGCCAGTTTGCCA ATTTGCCGGAAAATTAAAATTAGCTGAAATTAAATTCGCCAAAAAATCTTATTTTATAGTTAATT TTCTGAATTTTTTTTTAATTTTAAAAATTTTTGAAAAATTTATTTTTCGATTTTCCCTCAAAAGC ATCGAAAAAACGACATTTTTTCCAAAAAAAAAATCGAATTTTCAGCTAATATTAATTTGCCGATT TCCGGCAAATTTTTTTCAGGCAATTTGCAGATTTGTCGGAAATTTAAAATTTAAATTTAAAAAAT CGAAGAGATCTCTCTTCCCGTACCCTTTAAATCTCCAGTTCCAGGGAAATATTCTCCATGTTTAT GAAATGAAACAGTCATAACTCTATCTGTCGTATAAAATGCTTCCT Found at