TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:13713255 original size:11 final size:11 Alignment explanation
Indices: 13713237--13713266 Score: 32 Period size: 11 Copynumber: 2.7 Consensus size: 11 13713227 ACTATTTGTT * * 13713237 AAAGTTTTCCA 1 AAAATTTTCAA * * 13713248 AAATTTTTGAA 1 AAAATTTTCAA 13713259 AAAATTTT 1 AAAATTTT 13713267 TTTGGCAAAA Statistics Matches: 15, Mismatches: 4, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 11 15 1.00 ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43 Consensus pattern (11 bp): AAAATTTTCAA Left flanking sequence: Indices 13712737 -- 13713236 CCAAAAACAAAAATTACTATTAGATTTTTTATCGGAATTTAAAAAAGTTTTAGCTGATTTTGCTC ATGGTACATCGATCGGGTTCAATTTTGGGCACATTTTGAGCACAAAAACCATTAAAAGCGGCAAA TTTTGGTTTTTTTTTGTAAAAAAATAAATTTACACATTCTTAACTATTTGCTAAAGTATCAGAAA AAATGGGAAAAAAATTTTTAGAAAAAAAAATTTTTTGGTCCAAAAAATTTCAGATTTTTTTCCAA CAAAAAAAACATTTCTAAAGATCCTTGAATTTTTTGTATTTCCAAAAACAAATTTACTATTAGAT TTTTTTTCGTAGTTTCAAAAATTAATAGAGTTATAGCTTGTTTGCATCGATAGGGACTGTCGCTT TCGATTCGGTGACTTTTTAAGGCGCAAAATCTTTGAAAAATGACAAATTTTTGTTTTTTGATAAT TAATACATTTATTTTGATAATTAATACATCTGTTAACTATTTGTT Right flanking sequence: Indices 13713267 -- 13713766 TTTGGCAAAAAAAATTTCATTTTTTTTGAAAAAAACTCTATTTCCAATGATTTCTAACCTGTTTT TATCCCAAAAAACAAATTCACTATTAGCTTTTCTATAGTTTCGAAATTTAAGAAAGTTATAGCTA GTTTTGCTCATGGTGCATCGATGGGGATTTCAATTTTGGCACTTTTAGCGCAAAATTCATTTTTT TGTTAAACAATAAATTTATACAATGCTAACTATAATCATTAGCTATAGTTTTTTTAGAAATTAAA AAAAAAATGTTTAATTTTTTTCCAAAAAATTTCAAGTCAGATTTTTAAACTTCAAAATACTCCCC TAATACTGAACTTTCTGTAGGGACCAGCTTAAAAGATCCAGCTGATAAAAGAGAAAAAAAGGATG AAATCAATCATGATGGAATGCTTATTCATGCTCATCGAAAATGTCCCTCCACACACTGTTCAACA GGAAAAAAGAGATACGGAGAGAATTGAAGAAAAGATTAAAAATTA Found at i:13713309 original size:21 final size:23 Alignment explanation
Indices: 13713262--13713309 Score: 61 Period size: 22 Copynumber: 2.2 Consensus size: 23 13713252 TTTTGAAAAA * 13713262 ATTTTTTTGGCAAAAAAAATTTC 1 ATTTTTTTGGCAAAAAAAATCTC * * 13713285 ATTTTTTTTG-AAAAAAACTCT- 1 ATTTTTTTGGCAAAAAAAATCTC 13713306 ATTT 1 ATTT 13713310 CCAATGATTT Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 21 4 0.18 22 9 0.41 23 9 0.41 ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48 Consensus pattern (23 bp): ATTTTTTTGGCAAAAAAAATCTC Left flanking sequence: Indices 13712762 -- 13713261 TTTTTATCGGAATTTAAAAAAGTTTTAGCTGATTTTGCTCATGGTACATCGATCGGGTTCAATTT TGGGCACATTTTGAGCACAAAAACCATTAAAAGCGGCAAATTTTGGTTTTTTTTTGTAAAAAAAT AAATTTACACATTCTTAACTATTTGCTAAAGTATCAGAAAAAATGGGAAAAAAATTTTTAGAAAA AAAAATTTTTTGGTCCAAAAAATTTCAGATTTTTTTCCAACAAAAAAAACATTTCTAAAGATCCT TGAATTTTTTGTATTTCCAAAAACAAATTTACTATTAGATTTTTTTTCGTAGTTTCAAAAATTAA TAGAGTTATAGCTTGTTTGCATCGATAGGGACTGTCGCTTTCGATTCGGTGACTTTTTAAGGCGC AAAATCTTTGAAAAATGACAAATTTTTGTTTTTTGATAATTAATACATTTATTTTGATAATTAAT ACATCTGTTAACTATTTGTTAAAGTTTTCCAAAATTTTTGAAAAA Right flanking sequence: Indices 13713310 -- 13713809 CCAATGATTTCTAACCTGTTTTTATCCCAAAAAACAAATTCACTATTAGCTTTTCTATAGTTTCG AAATTTAAGAAAGTTATAGCTAGTTTTGCTCATGGTGCATCGATGGGGATTTCAATTTTGGCACT TTTAGCGCAAAATTCATTTTTTTGTTAAACAATAAATTTATACAATGCTAACTATAATCATTAGC TATAGTTTTTTTAGAAATTAAAAAAAAAATGTTTAATTTTTTTCCAAAAAATTTCAAGTCAGATT TTTAAACTTCAAAATACTCCCCTAATACTGAACTTTCTGTAGGGACCAGCTTAAAAGATCCAGCT GATAAAAGAGAAAAAAAGGATGAAATCAATCATGATGGAATGCTTATTCATGCTCATCGAAAATG TCCCTCCACACACTGTTCAACAGGAAAAAAGAGATACGGAGAGAATTGAAGAAAAGATTAAAAAT TATTGTTCTGAAAATCACATTTATCATACCTAGGAATAAACCTAT Found at i:13716659 original size:11 final size:11 Alignment explanation
Indices: 13716643--13716696 Score: 73 Period size: 11 Copynumber: 4.9 Consensus size: 11 13716633 TATGGTCAGG 13716643 GTACTGTAGTA 1 GTACTGTAGTA ** 13716654 GTACTGTAGAG 1 GTACTGTAGTA * 13716665 GTACTGTAGGA 1 GTACTGTAGTA * 13716676 GTACTGTATTA 1 GTACTGTAGTA * 13716687 TTACTGTAGT 1 GTACTGTAGT 13716697 TTAGGAGAAA Statistics Matches: 35, Mismatches: 8, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 35 1.00 ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37 Consensus pattern (11 bp): GTACTGTAGTA Left flanking sequence: Indices 13716143 -- 13716642 GTGCATCGACGTTTTCCTAAAAGCCAATATCGGTAAATTTTGATAGCATTTTGAAATCTTTAATA CAAAAAATAGATAAAAAGGTAATTCTAACATTATTTTATACGGATTTCAACTTCAATTTTAATAA GCTTTATTTTATTTGCAAGTTTTGAACTATAAGTTGATAATTTTAGAAACACATAACAAAAAAAA CCATAGTAGCTACAGCTTTCTCTATTATGAAATGAAGACATATGTTGCAAATCCGCAATTTGCTG TGTTCACGAGACTTCAAATTCAACCCATGTTATGACAGATGTACGTGACCTTCACGATAAGGGAC GACAAAAAAGTCGAATGTGTACAAATGGACACCTGTTGTAGACGCAAAACTGGGGTGTTAGCTTT ATTAGAGAAAAAAGGAAAAATACATTTTTTGTAGCTAATTGTAGTTTGTAGTCTGTGCTTCAGAA GAAAAAAGAGTCTTTTGATGGGCGGTTGTGGCGGATATGGTCAGG Right flanking sequence: Indices 13716697 -- 13717196 TTAGGAGAAATTTAGTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGAGTATGGTCAGGGTACTG TAGTAGTACTGTAGATGTACTGTAGGATTACTGTAGTTTAGGAGAAATTTAGTTTTTGTATTTTG AAGGGATGGGGGGGGGGGGGGAGTATGGTCAGGGTACTGTAGTAGTACTGTAGATGTACTGTAGG ATTACTGTAGTTTAGGAGAAATTTAGTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGGGTATGG TCAGGGTACTGTAGTAGGACTGTAAGACTTACAATGTTAGTTATGGTCGGAGTACTTTAGTAAAA ATTTGCGGGAAATTCAAAATTTCTATTCAAGTTTTATGAAAAAAAATATTGGCGGGAAAAATTTT TCAACTTCTAGAATTTTCGCGAAATTCTGCAAAATTTAAGACCAAGGTGTAACTACACAGTAATT AGCTTTAAGATTTGTTCAAACAATTTAATTTGAAGCCAGTCGGAG Found at i:13716772 original size:11 final size:11 Alignment explanation
Indices: 13716756--13716798 Score: 58 Period size: 11 Copynumber: 3.9 Consensus size: 11 13716746 TATGGTCAGG 13716756 GTACTGTAGTA 1 GTACTGTAGTA ** 13716767 GTACTGTAGAT 1 GTACTGTAGTA * 13716778 GTACTGTAGGA 1 GTACTGTAGTA * 13716789 TTACTGTAGT 1 GTACTGTAGT 13716799 TTAGGAGAAA Statistics Matches: 26, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 26 1.00 ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37 Consensus pattern (11 bp): GTACTGTAGTA Left flanking sequence: Indices 13716256 -- 13716755 AACTTCAATTTTAATAAGCTTTATTTTATTTGCAAGTTTTGAACTATAAGTTGATAATTTTAGAA ACACATAACAAAAAAAACCATAGTAGCTACAGCTTTCTCTATTATGAAATGAAGACATATGTTGC AAATCCGCAATTTGCTGTGTTCACGAGACTTCAAATTCAACCCATGTTATGACAGATGTACGTGA CCTTCACGATAAGGGACGACAAAAAAGTCGAATGTGTACAAATGGACACCTGTTGTAGACGCAAA ACTGGGGTGTTAGCTTTATTAGAGAAAAAAGGAAAAATACATTTTTTGTAGCTAATTGTAGTTTG TAGTCTGTGCTTCAGAAGAAAAAAGAGTCTTTTGATGGGCGGTTGTGGCGGATATGGTCAGGGTA CTGTAGTAGTACTGTAGAGGTACTGTAGGAGTACTGTATTATTACTGTAGTTTAGGAGAAATTTA GTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGAGTATGGTCAGG Right flanking sequence: Indices 13716799 -- 13717298 TTAGGAGAAATTTAGTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGGGAGTATGGTCAGGGTAC TGTAGTAGTACTGTAGATGTACTGTAGGATTACTGTAGTTTAGGAGAAATTTAGTTTTTGTATTT TGAAGGGATGGGGGGGGGGGGGGTATGGTCAGGGTACTGTAGTAGGACTGTAAGACTTACAATGT TAGTTATGGTCGGAGTACTTTAGTAAAAATTTGCGGGAAATTCAAAATTTCTATTCAAGTTTTAT GAAAAAAAATATTGGCGGGAAAAATTTTTCAACTTCTAGAATTTTCGCGAAATTCTGCAAAATTT AAGACCAAGGTGTAACTACACAGTAATTAGCTTTAAGATTTGTTCAAACAATTTAATTTGAAGCC AGTCGGAGTACGCGCTTTGTGCGTGCGAACGGCTGGTTGTATTACAATTTTATCACAAAATAAAT TATAGTTTGAAAATTTTAATTTTGTGGCAAATTAATTAAAATCAG Found at i:13716876 original size:11 final size:11 Alignment explanation
Indices: 13716860--13716902 Score: 58 Period size: 11 Copynumber: 3.9 Consensus size: 11 13716850 TATGGTCAGG 13716860 GTACTGTAGTA 1 GTACTGTAGTA ** 13716871 GTACTGTAGAT 1 GTACTGTAGTA * 13716882 GTACTGTAGGA 1 GTACTGTAGTA * 13716893 TTACTGTAGT 1 GTACTGTAGT 13716903 TTAGGAGAAA Statistics Matches: 26, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 26 1.00 ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37 Consensus pattern (11 bp): GTACTGTAGTA Left flanking sequence: Indices 13716360 -- 13716859 TATTATGAAATGAAGACATATGTTGCAAATCCGCAATTTGCTGTGTTCACGAGACTTCAAATTCA ACCCATGTTATGACAGATGTACGTGACCTTCACGATAAGGGACGACAAAAAAGTCGAATGTGTAC AAATGGACACCTGTTGTAGACGCAAAACTGGGGTGTTAGCTTTATTAGAGAAAAAAGGAAAAATA CATTTTTTGTAGCTAATTGTAGTTTGTAGTCTGTGCTTCAGAAGAAAAAAGAGTCTTTTGATGGG CGGTTGTGGCGGATATGGTCAGGGTACTGTAGTAGTACTGTAGAGGTACTGTAGGAGTACTGTAT TATTACTGTAGTTTAGGAGAAATTTAGTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGAGTATG GTCAGGGTACTGTAGTAGTACTGTAGATGTACTGTAGGATTACTGTAGTTTAGGAGAAATTTAGT TTTTGTATTTTGAAGGGATGGGGGGGGGGGGGGAGTATGGTCAGG Right flanking sequence: Indices 13716903 -- 13717402 TTAGGAGAAATTTAGTTTTTGTATTTTGAAGGGATGGGGGGGGGGGGGGTATGGTCAGGGTACTG TAGTAGGACTGTAAGACTTACAATGTTAGTTATGGTCGGAGTACTTTAGTAAAAATTTGCGGGAA ATTCAAAATTTCTATTCAAGTTTTATGAAAAAAAATATTGGCGGGAAAAATTTTTCAACTTCTAG AATTTTCGCGAAATTCTGCAAAATTTAAGACCAAGGTGTAACTACACAGTAATTAGCTTTAAGAT TTGTTCAAACAATTTAATTTGAAGCCAGTCGGAGTACGCGCTTTGTGCGTGCGAACGGCTGGTTG TATTACAATTTTATCACAAAATAAATTATAGTTTGAAAATTTTAATTTTGTGGCAAATTAATTAA AATCAGGGACACCAAAAAAATATTAATGGTTAGAAAGAAAAGACAGCTATCTTTTATTATTTTTA AACTTCAAACTTTAATCTTTTTTAACGGAATTTAAAATTTGATAG Found at i:13717761 original size:17 final size:16 Alignment explanation
Indices: 13717739--13717773 Score: 47 Period size: 16 Copynumber: 2.1 Consensus size: 16 13717729 TAAAAATATT 13717739 TTTTTTAAACCAAATAA 1 TTTTTTAAA-CAAATAA * * 13717756 TTTTTTCAATAAATAA 1 TTTTTTAAACAAATAA 13717772 TT 1 TT 13717774 ATAATTTTTT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 16 8 0.50 17 8 0.50 ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49 Consensus pattern (16 bp): TTTTTTAAACAAATAA Left flanking sequence: Indices 13717239 -- 13717738 TATCACAAAATAAATTATAGTTTGAAAATTTTAATTTTGTGGCAAATTAATTAAAATCAGGGACA CCAAAAAAATATTAATGGTTAGAAAGAAAAGACAGCTATCTTTTATTATTTTTAAACTTCAAACT TTAATCTTTTTTAACGGAATTTAAAATTTGATAGGGAGGATTTTTAGTACAGGTCTAATATGGGT TTAAACTTGAAATTTTGAATTTCAGATCTGGTTTTTATATTCTTTATATTCTGACGCAAGACTGG GTTATAAATGTTCATGAAACAAACAATTCAATTAATAAGTTTAATTATTACAAAAATTCTGTATT ACTACAACTACCACACTTATTTCGACTAAAGCTTCGAATATATTCACTAAATACATTTGTCTTTA AAAAAATATTTTCTTAACAGTTCCCTTCAAAACAGTGCTTTTTTTTCCAATAATGAAAAAAATTA ATAACAGGTTCGTGGAATTAAAATATCTGTACACGTAAAAATATT Right flanking sequence: Indices 13717774 -- 13718273 ATAATTTTTTTAAAAATTAGTTTATTTTCAGTTAACGTGACATTTGACCTCTCCTTTGAATTGTC ATCATTTCCGTGGCAATTTGACAGTTTTCGAGAAAGAAAAATTTATTACCTTCTCCTAATGTGGA TTCGCAAGATGATCACTGATTGGGGATGGATGTTCGCCATCGTGGTTTCCGTGGCTAATTGCTCA TGTAAGTTTTTAGCAATTTTGAAAGGCAGTTTTATTTCATAATTGCTCCAATTTTCAGATGCTGC TCCGCATGCTCGTGTTTTTGAGACTAATGCTGTTGGACAGGACAATACCTTTTCTCGATTTGAGA GAGCTGTTAATGGTAAGAAGCCTCTAATATTATTTTTTAAACAATTATTTTTTTTGCAGCATCTT CATCAAAAAATGCAACCACCAATCCAACAGAATGGACTCCAGGTAAGAAAATTTTAAATAATTCA ACAGTGGAGGTCGAGCCAAAATGACAATTTGAAATCTCCCAAAAT Found at i:13718503 original size:13 final size:13 Alignment explanation
Indices: 13718475--13718504 Score: 39 Period size: 13 Copynumber: 2.3 Consensus size: 13 13718465 AATTTTTCAA *** 13718475 AATTTTTTTTTTC 1 AATTTTTTTCGGC 13718488 AATTTTTTTCGGC 1 AATTTTTTTCGGC 13718501 AATT 1 AATT 13718505 CCGGCAATTG Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.20, C:0.10, G:0.07, T:0.63 Consensus pattern (13 bp): AATTTTTTTCGGC Left flanking sequence: Indices 13717975 -- 13718474 TTTTTAGCAATTTTGAAAGGCAGTTTTATTTCATAATTGCTCCAATTTTCAGATGCTGCTCCGCA TGCTCGTGTTTTTGAGACTAATGCTGTTGGACAGGACAATACCTTTTCTCGATTTGAGAGAGCTG TTAATGGTAAGAAGCCTCTAATATTATTTTTTAAACAATTATTTTTTTTGCAGCATCTTCATCAA AAAATGCAACCACCAATCCAACAGAATGGACTCCAGGTAAGAAAATTTTAAATAATTCAACAGTG GAGGTCGAGCCAAAATGACAATTTGAAATCTCCCAAAATCTACTTTTTTCTTCTTTCTGAATCAA CATTTGATATAGAAACGTAGAAAACGATTATTTCCAGCTGAAAGTTATATTTATTTGTGTGTTGA ATAACTTAGTAAAGCCCTCAAATAATACCTGAAAGTTGGCATTTACCAATAAACTTTTAACGGCC AACAGGAACTTTCAGGCACTATTTTAAGAGTTTTCAATTTTTCAA Right flanking sequence: Indices 13718505 -- 13719004 CCGGCAATTGCCAAAATCGCCGAAATTACCTATTGCCGGACATTGTCGGCCATTTTCAAACCTAA TTATATTTCGAAAATTGAAAAAATTTCACCTTATTTTTTAAGTATTCGGTTAGCCATTTTCTAAC AGAAAACGTTCAATCTTTTAAGGATTAAATCATTTTGCGCTTGAAAAGTGAAAATTGTGCAGTAA AGTGCATGGTTAGGCTCCTTAATCTACAAAACTGTCAAACTTATATTTCCGGCAATCGACAATTG CCGCGCACCTTTGTAGCAAACTGTTGTTTTGGCTTGATCCCGGAATATCACTGCAACTTTTTTCG AACGAGGGCCCACGGCCCGAGAAGTGATACCTGTACGCAATTTGTCTACCGTACACCTGGACGTT TGGGCGCGTTTTTCTCAAAAACGGCTGGTCCAGTTTTTTTGTGTTGCATATAAAAAAAGTTCGAA ATTAAATTCAAAATTTTTTGGACCAAAGCTTTTTTCCTTAAAACG Found at i:13721465 original size:19 final size:19 Alignment explanation
Indices: 13721441--13721481 Score: 82 Period size: 19 Copynumber: 2.2 Consensus size: 19 13721431 TTTTTGAGAA 13721441 TCATTTTACGTGTTTTTTT 1 TCATTTTACGTGTTTTTTT 13721460 TCATTTTACGTGTTTTTTT 1 TCATTTTACGTGTTTTTTT 13721479 TCA 1 TCA 13721482 CACGCCGGTA Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 22 1.00 ACGTcount: A:0.12, C:0.12, G:0.10, T:0.66 Consensus pattern (19 bp): TCATTTTACGTGTTTTTTT Left flanking sequence: Indices 13720941 -- 13721440 ACTGCCGGATAAAGCGACTTTTAAGAAACTAGGTGATCTGAAAAGTTTGAATTTGGGAACTATTG CCACAATTGATGTTGATTCAATAATCAAGTCACTCGATGACGGATCGGATAAATCAGTTGCTGCT GTTAACACGACATTAGAAGAATTTGCTAAATCGATTGCCACTGTAACATCTGCTTTGGATAAAAC TTCCAGTATGGAAACTCTTGAAACCCTAAAACCTATCACAAATTATGCCAAGTTGTTTCAATATT ATGACAACTCACAAGCGATTTATATTAAAGCTGCCACTGATGATGATATTAAGGGTTTAGACAAT TTATTAAGCACTATCAAGACCATTCCAAACAGTAATTCGACGTTGTTTAGCGACATTAAAATGCT CACAACTGAAACTTCTTCGCTTATTCGTCAGCATACCTCTGGATTGTGGAATGGTTATCACGATT TCAGCAATCTCTTGAAGGACATAAAAAACAAATTCTTTTTGAGAA Right flanking sequence: Indices 13721482 -- 13721981 CACGCCGGTATGTCGTTGGATGAAGAAGATTTTGCGGACGCTGGAGAGTTTCTAGAGTGCGATCT GAAGAGAAGAAATGGCATCCCAATTAGCTTTGAGGAGAGAATCTTTGTTAGTTTCAGTAAGTTTC TGAAATCGGAGGAGTTCAAGTCGTCCATGAGAAGTATCATCGAGACATCTATTGATGCCACTTTG AATAATAGAATGAAGAAGCTTGAAGATAAGATCGCCGAGCTGACAGAAGACCTTAAAACTCAGAA GAAACGGTTGGATTTGGCATTGGTCGAGTTGAAGAATCCGACAGTGAATGCAGAGAATGAAGACG TGGCGGAAGTGAAAGAACGGAATCGGTCAATCGTTATCCACAATGTACCAGAATGGACCGATGAC TTGCAACATGATCGCAGTGAGCACGAAGTACGGTGTGTCAACATGCTTCTTCGTCACATGAATGT TTGTGCACTACCTGTAGCCGCGTATCGTCTTGGAAAAATGAGAAC Found at i:13725173 original size:10 final size:11 Alignment explanation
Indices: 13725158--13725179 Score: 37 Period size: 10 Copynumber: 2.1 Consensus size: 11 13725148 ATTTGTCTTC 13725158 TGTTTTT-TAT 1 TGTTTTTATAT 13725168 TGTTTTTATAT 1 TGTTTTTATAT 13725179 T 1 T 13725180 TATGTAATTG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 7 0.64 11 4 0.36 ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77 Consensus pattern (11 bp): TGTTTTTATAT Left flanking sequence: Indices 13724658 -- 13725157 CAGTAATCACTAGTCCAATTAAGAAAAACGACTCAAAAGCTATAGAATCAGTACAAAACGCGTTT ACGAGAAGGCTTTACAGTAGAATGAAGGGTAGATACATCAGACCAGATGACAAAGATTACAAATC GGCCTCGGAAAGAAATGAATTATTTAAGCTCTCAACGTTAGAAAATAGAAGATTAGCAATTGATA AAAAACTCATATCCCACATGATGACTGGGAAAATAGGTCTTGAAACGTCTGAATTTTTCAACTTT ACTGAAAATACACGTACACGTTCGAAATACAAATTCTCTTGGGGCAAGTGCAAAACTAGAATTAG GCGACATTTTGTTATTAATCGTACCTTAAGTACGCAACTAAACAATTTTTGACACGATACAACCG ATCATAAGCTCTCCTTAACTTCTGCTCTTCAAATGTCCAGTTTCCCTATCCTCTTCATCTTCACC CCCCTTTCCCAATTTTTTTTTCTTCTATTATTTGTATTTGTCTTC Right flanking sequence: Indices 13725180 -- 13725679 TATGTAATTGGTTTTCATCACGTCTCCGAGAGAGCGTAATAAATAAATAAATAAATCACGAGTTC AAGTATTCCAAGTGAAGGTTTTCTGGTATTCGAAGACATTAAGAACCAGATGATTAAATTGAATA CAAAACTGAAACATGTGACGAATACATCTAACATGGAATCATTCCGACTAGCAGAAAAAATCAAA GGTGGTTTGAAATTTACTGAAGGTCCAGCTACAAATGTTGAAACTTTCACAAAATCGTTTATAAC ACTTATGTTTGCATCAAAACAATCTAATCTAGTGTCTACACTAATTCAAATCAGTACCATCACTC GTGATTTGAATAACAAATTCGAAGCCGTTCGCAGTCTTGCAAAAATGAAAAATGATCTGGTTTCT TCAAAAACTCGTTCTACTTTACAATTCAGGAGTGTAGTTAGTCGTCTGCAGCCTTATTTGAAAAT CATCAAATCTGGAAAATTGCCTGCAGATCTTATAACTGAAGTTCT Found at i:13731423 original size:11 final size:11 Alignment explanation
Indices: 13731402--13731815 Score: 378 Period size: 11 Copynumber: 37.6 Consensus size: 11 13731392 GTTCTGAAAA * 13731402 AGGGTTACTGT 1 AGGGGTACTGT * 13731413 GGGGGTACTGT 1 AGGGGTACTGT * * 13731424 GGGAGTACTGT 1 AGGGGTACTGT * 13731435 AGGGGTATTGT 1 AGGGGTACTGT ** 13731446 AGGGAGACTGT 1 AGGGGTACTGT * 13731457 AGGGGCACTGT 1 AGGGGTACTGT ** * 13731468 TTGGGTAATGT 1 AGGGGTACTGT 13731479 AGGGGTACTGT 1 AGGGGTACTGT * * ** 13731490 GGGAGTACCTT 1 AGGGGTACTGT * * 13731501 TGGCGTACTGT 1 AGGGGTACTGT * 13731512 AGGGGTAC-AT 1 AGGGGTACTGT ** 13731522 CAGGGTACTGT 1 AGGGGTACTGT 13731533 AGGGGGTACTGT 1 A-GGGGTACTGT 13731545 AGGGGTACTGT 1 AGGGGTACTGT 13731556 AGGGGTACTGT 1 AGGGGTACTGT * *** 13731567 AGGAGTACATC 1 AGGGGTACTGT * 13731578 AGGGGTACTAT 1 AGGGGTACTGT 13731589 AGGGGTACTGT 1 AGGGGTACTGT *** 13731600 AGGGGTACATC 1 AGGGGTACTGT 13731611 AGGGGTACTGT 1 AGGGGTACTGT * ** * 13731622 GGGAATCCTGT 1 AGGGGTACTGT * * * 13731633 AGCGGTGCCGT 1 AGGGGTACTGT * ** 13731644 AGGGGTGCTAC 1 AGGGGTACTGT * ** 13731655 AGGAGTACTTC 1 AGGGGTACTGT 13731666 AGGGGTACTGT 1 AGGGGTACTGT * 13731677 AGGGATACTGT 1 AGGGGTACTGT * 13731688 AGGGATACTGT 1 AGGGGTACTGT * 13731699 AGGAGTACTGT 1 AGGGGTACTGT 13731710 AGGGGTACTGT 1 AGGGGTACTGT * *** 13731721 AGGAGTACATC 1 AGGGGTACTGT * 13731732 AGGGGTACTAT 1 AGGGGTACTGT 13731743 AGGGGTACTGT 1 AGGGGTACTGT *** 13731754 AGGGGTACATC 1 AGGGGTACTGT 13731765 AGGGGTACTGT 1 AGGGGTACTGT * * * 13731776 GGGAGTCCTGT 1 AGGGGTACTGT * ** * 13731787 AGCGGCGCCGT 1 AGGGGTACTGT * * 13731798 AGGGGTTCTAT 1 AGGGGTACTGT * 13731809 AGGAGTA 1 AGGGGTA 13731816 GCGTACTAGT Statistics Matches: 297, Mismatches: 104, Indels: 4 0.73 0.26 0.01 Matches are distributed among these distances: 10 7 0.02 11 280 0.94 12 10 0.03 ACGTcount: A:0.21, C:0.13, G:0.41, T:0.26 Consensus pattern (11 bp): AGGGGTACTGT Left flanking sequence: Indices 13730902 -- 13731401 ATGGTGCCAACTGCGTTGATGTCCATGCAAGCTTTACGGTCACGCTGAAATGTATCTTGTGCTTA TTCACTCGATAAACCCTACCGCATACTGCCCTGTCATTCCAACAGCAGCGAGGTGGTAGACAGTG TCCACCTGCTCCAATGCGGTTTTCATAGTGCACTCGTCGTCGAAGGAGCACTGTAAAAATGTACT TTGCTGGGTATAAGACCCCCATACATCTAAGCTCTCACCTTCACAAAAGCCACATGATGCTTCAG AACCCTGCCACGTGGTTCCAGCACATCCACTAACACGATTTGAATATACATCGGCAACCTCTTCT CAACTTCCTTATCTACTTTTGTGGAAATCACTGCGGGCATCTCCTTCTCCAACATCTCCCTGATT TTCGGTCTTATTGAGTCACGAGTCATCTCCTCAAGCTTGGCGACGAGATTCTCGGCAAGATGGCC TGCTCCACCGGTGATCAGCACTTTCCATGGTCGCGGTTCTGAAAA Right flanking sequence: Indices 13731816 -- 13732315 GCGTACTAGTGCTCTGGTTACATTTTCGAGTAAAACTTTTTGAAAAAGAAATTTGTACAATTTAA AATTACATGTATTTTTCAGGTATTTTTTCGCTATTTTCGTTGTTTTGGTCACCTTTTCTAGTGAA AAATGGATTTTTTTGCCAAAAGCACGGAAAACGAAAAACGAAAAATCCCCAGCTGTGAAGGTACT GTAGGGATTCTGTAGGATTACTGTAGGGGTACTGTAGGACTTTTTACATTTTCGAGGAAAACTTT TTGAAGAAAATTGTTTAAAATTTAAAAAAATATGAATTTTTCAGGTTTTTTGGGTATTTTCGTTG TTTCGGTTACCTTCTCCAGCGTAAAATAGATTTTTCGCCAAAAGCACGGAAAACGAAAAATCCCC AACTGTGGAGGGTACTGTCGGGGTACGGTAGGGTTACTGTAGAGGTACTGTAGGGTTAGGGGGAC TATAGGAGTAATGTAGGGGTACTATTGGGTTACTGTAAAAGTACT Found at i:13731915 original size:11 final size:12 Alignment explanation
Indices: 13731892--13731917 Score: 38 Period size: 11 Copynumber: 2.2 Consensus size: 12 13731882 ATTACATGTA * 13731892 TTTTTCAGGTAT 1 TTTTTCAGCTAT 13731904 TTTTTC-GCTAT 1 TTTTTCAGCTAT 13731915 TTT 1 TTT 13731918 CGTTGTTTTG Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 11 7 0.54 12 6 0.46 ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65 Consensus pattern (12 bp): TTTTTCAGCTAT Left flanking sequence: Indices 13731392 -- 13731891 GTTCTGAAAAAGGGTTACTGTGGGGGTACTGTGGGAGTACTGTAGGGGTATTGTAGGGAGACTGT AGGGGCACTGTTTGGGTAATGTAGGGGTACTGTGGGAGTACCTTTGGCGTACTGTAGGGGTACAT CAGGGTACTGTAGGGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGAGTACATCAGGGGTACT ATAGGGGTACTGTAGGGGTACATCAGGGGTACTGTGGGAATCCTGTAGCGGTGCCGTAGGGGTGC TACAGGAGTACTTCAGGGGTACTGTAGGGATACTGTAGGGATACTGTAGGAGTACTGTAGGGGTA CTGTAGGAGTACATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGGTACTGTGGGAGT CCTGTAGCGGCGCCGTAGGGGTTCTATAGGAGTAGCGTACTAGTGCTCTGGTTACATTTTCGAGT AAAACTTTTTGAAAAAGAAATTTGTACAATTTAAAATTACATGTA Right flanking sequence: Indices 13731918 -- 13732417 CGTTGTTTTGGTCACCTTTTCTAGTGAAAAATGGATTTTTTTGCCAAAAGCACGGAAAACGAAAA ACGAAAAATCCCCAGCTGTGAAGGTACTGTAGGGATTCTGTAGGATTACTGTAGGGGTACTGTAG GACTTTTTACATTTTCGAGGAAAACTTTTTGAAGAAAATTGTTTAAAATTTAAAAAAATATGAAT TTTTCAGGTTTTTTGGGTATTTTCGTTGTTTCGGTTACCTTCTCCAGCGTAAAATAGATTTTTCG CCAAAAGCACGGAAAACGAAAAATCCCCAACTGTGGAGGGTACTGTCGGGGTACGGTAGGGTTAC TGTAGAGGTACTGTAGGGTTAGGGGGACTATAGGAGTAATGTAGGGGTACTATTGGGTTACTGTA AAAGTACTGTAGGTTTAATGTAAGTACTTAAGTACTTTAGGGGTGATGTATGGGGTACTGTAGGG TAACTGTATGAGAACTATAGGGATACCACAATGGTACTTTAAGGG Found at i:13732023 original size:11 final size:11 Alignment explanation
Indices: 13732009--13732048 Score: 50 Period size: 11 Copynumber: 3.6 Consensus size: 11 13731999 TGTGAAGGTA 13732009 CTGTAGGGATT 1 CTGTAGGGATT 13732020 CTGTA-GGATT 1 CTGTAGGGATT * * 13732030 ACTGTAGGGGTA 1 -CTGTAGGGATT 13732042 CTGTAGG 1 CTGTAGG 13732049 ACTTTTTACA Statistics Matches: 25, Mismatches: 2, Indels: 4 0.81 0.06 0.13 Matches are distributed among these distances: 10 5 0.20 11 17 0.68 12 3 0.12 ACGTcount: A:0.20, C:0.10, G:0.38, T:0.33 Consensus pattern (11 bp): CTGTAGGGATT Left flanking sequence: Indices 13731509 -- 13732008 TGTAGGGGTACATCAGGGTACTGTAGGGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGAGTA CATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGGTACTGTGGGAATCCTGTAGCGGT GCCGTAGGGGTGCTACAGGAGTACTTCAGGGGTACTGTAGGGATACTGTAGGGATACTGTAGGAG TACTGTAGGGGTACTGTAGGAGTACATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAGGG GTACTGTGGGAGTCCTGTAGCGGCGCCGTAGGGGTTCTATAGGAGTAGCGTACTAGTGCTCTGGT TACATTTTCGAGTAAAACTTTTTGAAAAAGAAATTTGTACAATTTAAAATTACATGTATTTTTCA GGTATTTTTTCGCTATTTTCGTTGTTTTGGTCACCTTTTCTAGTGAAAAATGGATTTTTTTGCCA AAAGCACGGAAAACGAAAAACGAAAAATCCCCAGCTGTGAAGGTA Right flanking sequence: Indices 13732049 -- 13732548 ACTTTTTACATTTTCGAGGAAAACTTTTTGAAGAAAATTGTTTAAAATTTAAAAAAATATGAATT TTTCAGGTTTTTTGGGTATTTTCGTTGTTTCGGTTACCTTCTCCAGCGTAAAATAGATTTTTCGC CAAAAGCACGGAAAACGAAAAATCCCCAACTGTGGAGGGTACTGTCGGGGTACGGTAGGGTTACT GTAGAGGTACTGTAGGGTTAGGGGGACTATAGGAGTAATGTAGGGGTACTATTGGGTTACTGTAA AAGTACTGTAGGTTTAATGTAAGTACTTAAGTACTTTAGGGGTGATGTATGGGGTACTGTAGGGT AACTGTATGAGAACTATAGGGATACCACAATGGTACTTTAAGGGTACTGTAGGTACTGTAGGAGT ACTAAAACTCACCAGGCTCCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAA GAGGTCATACGATTCCAGCTCCGATGTATACCTTTTTTCAATCGC Found at i:13732032 original size:22 final size:22 Alignment explanation
Indices: 13732007--13732049 Score: 72 Period size: 22 Copynumber: 2.0 Consensus size: 22 13731997 GCTGTGAAGG * 13732007 TACTGTAGGGATTCTGTAGGAT 1 TACTGTAGGGATACTGTAGGAT * 13732029 TACTGTAGGGGTACTGTAGGA 1 TACTGTAGGGATACTGTAGGA 13732050 CTTTTTACAT Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 22 19 1.00 ACGTcount: A:0.23, C:0.09, G:0.35, T:0.33 Consensus pattern (22 bp): TACTGTAGGGATACTGTAGGAT Left flanking sequence: Indices 13731507 -- 13732006 ACTGTAGGGGTACATCAGGGTACTGTAGGGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGAG TACATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGGTACTGTGGGAATCCTGTAGCG GTGCCGTAGGGGTGCTACAGGAGTACTTCAGGGGTACTGTAGGGATACTGTAGGGATACTGTAGG AGTACTGTAGGGGTACTGTAGGAGTACATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAG GGGTACTGTGGGAGTCCTGTAGCGGCGCCGTAGGGGTTCTATAGGAGTAGCGTACTAGTGCTCTG GTTACATTTTCGAGTAAAACTTTTTGAAAAAGAAATTTGTACAATTTAAAATTACATGTATTTTT CAGGTATTTTTTCGCTATTTTCGTTGTTTTGGTCACCTTTTCTAGTGAAAAATGGATTTTTTTGC CAAAAGCACGGAAAACGAAAAACGAAAAATCCCCAGCTGTGAAGG Right flanking sequence: Indices 13732050 -- 13732549 CTTTTTACATTTTCGAGGAAAACTTTTTGAAGAAAATTGTTTAAAATTTAAAAAAATATGAATTT TTCAGGTTTTTTGGGTATTTTCGTTGTTTCGGTTACCTTCTCCAGCGTAAAATAGATTTTTCGCC AAAAGCACGGAAAACGAAAAATCCCCAACTGTGGAGGGTACTGTCGGGGTACGGTAGGGTTACTG TAGAGGTACTGTAGGGTTAGGGGGACTATAGGAGTAATGTAGGGGTACTATTGGGTTACTGTAAA AGTACTGTAGGTTTAATGTAAGTACTTAAGTACTTTAGGGGTGATGTATGGGGTACTGTAGGGTA ACTGTATGAGAACTATAGGGATACCACAATGGTACTTTAAGGGTACTGTAGGTACTGTAGGAGTA CTAAAACTCACCAGGCTCCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAAG AGGTCATACGATTCCAGCTCCGATGTATACCTTTTTTCAATCGCA Found at i:13732349 original size:61 final size:61 Alignment explanation
Indices: 13732217--13732351 Score: 144 Period size: 61 Copynumber: 2.2 Consensus size: 61 13732207 ACTGTGGAGG * * * * * * * * 13732217 GTACTGTCGGGGTACGGTAGGGTTACTGTAGAGGTACTGTAGGGTTAGGGGGACTATAGGA 1 GTACTGTAGGGGTACGATAGGGTTACTGTAAAAGTACTGTAGGGTTAAGGGAACTACAGAA * * * * * * * ** 13732278 GTAATGTAGGGGTACTATTGGGTTACTGTAAAAGTACTGTAGGTTTAATGTAAGTACTTAA 1 GTACTGTAGGGGTACGATAGGGTTACTGTAAAAGTACTGTAGGGTTAAGGGAACTACAGAA * 13732339 GTACTTTAGGGGT 1 GTACTGTAGGGGT 13732352 GATGTATGGG Statistics Matches: 55, Mismatches: 19, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 61 55 1.00 ACGTcount: A:0.25, C:0.08, G:0.35, T:0.32 Consensus pattern (61 bp): GTACTGTAGGGGTACGATAGGGTTACTGTAAAAGTACTGTAGGGTTAAGGGAACTACAGAA Left flanking sequence: Indices 13731717 -- 13732216 CTGTAGGAGTACATCAGGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGGTACTGTGGGAGT CCTGTAGCGGCGCCGTAGGGGTTCTATAGGAGTAGCGTACTAGTGCTCTGGTTACATTTTCGAGT AAAACTTTTTGAAAAAGAAATTTGTACAATTTAAAATTACATGTATTTTTCAGGTATTTTTTCGC TATTTTCGTTGTTTTGGTCACCTTTTCTAGTGAAAAATGGATTTTTTTGCCAAAAGCACGGAAAA CGAAAAACGAAAAATCCCCAGCTGTGAAGGTACTGTAGGGATTCTGTAGGATTACTGTAGGGGTA CTGTAGGACTTTTTACATTTTCGAGGAAAACTTTTTGAAGAAAATTGTTTAAAATTTAAAAAAAT ATGAATTTTTCAGGTTTTTTGGGTATTTTCGTTGTTTCGGTTACCTTCTCCAGCGTAAAATAGAT TTTTCGCCAAAAGCACGGAAAACGAAAAATCCCCAACTGTGGAGG Right flanking sequence: Indices 13732352 -- 13732851 GATGTATGGGGTACTGTAGGGTAACTGTATGAGAACTATAGGGATACCACAATGGTACTTTAAGG GTACTGTAGGTACTGTAGGAGTACTAAAACTCACCAGGCTCCTCAACAATCTTAATCTCCTTCTC TTCTTCAAGTCCAGCTTCCAAAGAGGTCATACGATTCCAGCTCCGATGTATACCTTTTTTCAATC GCATAGACAAACGTTTGATGCTCATTTTTAGGCCGCAATTTTGAAGAAAATGTGAATTGAAAATG CTATAGTTGTATGTTTTTTTTTTCGGCCATGTCCTCCTAACTTGCACAGACACAAAAAAAAACAG AAAAACAATCGAATTAGTGAAATCTGAAATTTTTATTCATACAATAGTCTAGCGACAATACAAAG GAATACAACAAAAAAATTTGGTGAAAAATGAACAAAAAATCAATAAATTACACGTTCTTCGGTTT AAGATGGCACTTTTCAGTGGCCAACTCGTCGAGCTTCTGCTGATT Found at i:13732987 original size:20 final size:18 Alignment explanation
Indices: 13732946--13733077 Score: 90 Period size: 19 Copynumber: 6.9 Consensus size: 18 13732936 GATAAACTGG 13732946 AAAT-TTATTGATTTTTTAGA 1 AAATATTATTGA--TTTT-GA 13732966 AAGATATTATTGATTTTGGA 1 AA-ATATTATTGATTTT-GA * * * 13732986 AAATTTTATCGATTTTTA 1 AAATATTATTGATTTTGA * * 13733004 AGAAAATTATTGATTTTTA 1 A-AATATTATTGATTTTGA ** * 13733023 AAA-ATTAATTTTTTTAGAA 1 AAATATT-ATTGATTTTG-A * 13733042 AAATATTATTGATTTTTGTG 1 AAATATTATTGA-TTTTG-A * 13733062 AAAAATTATTGATTTT 1 AAATATTATTGATTTT 13733078 TTAAACTTGA Statistics Matches: 88, Mismatches: 17, Indels: 15 0.73 0.14 0.12 Matches are distributed among these distances: 17 3 0.03 18 10 0.11 19 38 0.43 20 28 0.32 21 2 0.02 22 7 0.08 ACGTcount: A:0.38, C:0.01, G:0.11, T:0.51 Consensus pattern (18 bp): AAATATTATTGATTTTGA Left flanking sequence: Indices 13732446 -- 13732945 CTCACCAGGCTCCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAAGAGGTCA TACGATTCCAGCTCCGATGTATACCTTTTTTCAATCGCATAGACAAACGTTTGATGCTCATTTTT AGGCCGCAATTTTGAAGAAAATGTGAATTGAAAATGCTATAGTTGTATGTTTTTTTTTTCGGCCA TGTCCTCCTAACTTGCACAGACACAAAAAAAAACAGAAAAACAATCGAATTAGTGAAATCTGAAA TTTTTATTCATACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAATTTGGTGAAAAAT GAACAAAAAATCAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAGTGGCCAACTCGT CGAGCTTCTGCTGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTGTCTTCTGGATCC TCTCCGGTTAAGGCTACGCGCCAGATCATTCGAGCGATAAACTGG Right flanking sequence: Indices 13733078 -- 13733577 TTAAACTTGATTTTTTTAAATTATCAATTTTTTAAGGAAATTATTGATTTTTTTGGTGAAAGTGC TAATTTATTAATTTAATTTTTCGGGGAAACATTTTGATTTTTGTGATAATTTATTGATTTTTCAA GCAGTTATTGATTTTGGAATATTATCGATTTTTGTGAAAAAGTATTGATTTTTTTTAAAATTTAT CATTTTGTGTGAGAAATTATTGATTTCTGCAATATTTATTGATTTTTGAGCCAAATTTTTGATTT TTATGCATAATTATTAAATTTTGAGCAGTTTTAAAAGAGTTTGAATTTTGTGGAAAAATCACTGG TTTTTAAGAAATTTTATCAGTTTTTTATTTAAATTTTGAATTGGAGTAAAGAAGTTATCGATTTT TCTACAAAATTGACAATTTTTACGGAAAAACATGCACTTTTTAATTTAAAGTACCAAGCTCTGCA AAAAAATGAAAAAATTAGTTATCGATTTTTTTCTTAAAAAATGTT Found at i:13733058 original size:37 final size:38 Alignment explanation
Indices: 13732957--13733058 Score: 123 Period size: 37 Copynumber: 2.7 Consensus size: 38 13732947 AATTTATTGA * * * * 13732957 TTTTTTAGAAAGATATTATTGATTTTGGAAAATTTTATC 1 TTTTTTAGAAAAATATTATTGATTTT-TAAAAATTAATC * * 13732996 GATTTTTA-AGAAA-ATTATTGATTTTTAAAAATTAAT- 1 -TTTTTTAGAAAAATATTATTGATTTTTAAAAATTAATC 13733032 TTTTTTAGAAAAATATTATTGATTTTT 1 TTTTTTAGAAAAATATTATTGATTTTT 13733059 GTGAAAAATT Statistics Matches: 52, Mismatches: 8, Indels: 7 0.78 0.12 0.10 Matches are distributed among these distances: 35 6 0.12 36 4 0.08 37 21 0.40 38 12 0.23 39 3 0.06 40 6 0.12 ACGTcount: A:0.37, C:0.01, G:0.10, T:0.52 Consensus pattern (38 bp): TTTTTTAGAAAAATATTATTGATTTTTAAAAATTAATC Left flanking sequence: Indices 13732457 -- 13732956 CCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAAGAGGTCATACGATTCCAG CTCCGATGTATACCTTTTTTCAATCGCATAGACAAACGTTTGATGCTCATTTTTAGGCCGCAATT TTGAAGAAAATGTGAATTGAAAATGCTATAGTTGTATGTTTTTTTTTTCGGCCATGTCCTCCTAA CTTGCACAGACACAAAAAAAAACAGAAAAACAATCGAATTAGTGAAATCTGAAATTTTTATTCAT ACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAATTTGGTGAAAAATGAACAAAAAAT CAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAGTGGCCAACTCGTCGAGCTTCTGC TGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTGTCTTCTGGATCCTCTCCGGTTAA GGCTACGCGCCAGATCATTCGAGCGATAAACTGGAAATTTATTGA Right flanking sequence: Indices 13733059 -- 13733558 GTGAAAAATTATTGATTTTTTAAACTTGATTTTTTTAAATTATCAATTTTTTAAGGAAATTATTG ATTTTTTTGGTGAAAGTGCTAATTTATTAATTTAATTTTTCGGGGAAACATTTTGATTTTTGTGA TAATTTATTGATTTTTCAAGCAGTTATTGATTTTGGAATATTATCGATTTTTGTGAAAAAGTATT GATTTTTTTTAAAATTTATCATTTTGTGTGAGAAATTATTGATTTCTGCAATATTTATTGATTTT TGAGCCAAATTTTTGATTTTTATGCATAATTATTAAATTTTGAGCAGTTTTAAAAGAGTTTGAAT TTTGTGGAAAAATCACTGGTTTTTAAGAAATTTTATCAGTTTTTTATTTAAATTTTGAATTGGAG TAAAGAAGTTATCGATTTTTCTACAAAATTGACAATTTTTACGGAAAAACATGCACTTTTTAATT TAAAGTACCAAGCTCTGCAAAAAAATGAAAAAATTAGTTATCGAT Found at i:13733091 original size:57 final size:56 Alignment explanation
Indices: 13732945--13733129 Score: 169 Period size: 57 Copynumber: 3.3 Consensus size: 56 13732935 CGATAAACTG * * ** * * * 13732945 GAAATTTATTGATTTTTTAGAAAGATATTATTGATTTTGGAAAATTTTATCGATTTTTAA 1 GAAAATTATTGA-TTTTTA-AAA-AT-TAATTTTTTTAGAAAAATATTATCGATTTTTAA * ** 13733005 GAAAATTATTGATTTTTAAAAATTAATTTTTTTAGAAAAATATTATTGATTTTTGT 1 GAAAATTATTGATTTTTAAAAATTAATTTTTTTAGAAAAATATTATCGATTTTTAA * * * * 13733061 GAAAAATTATTGATTTTTTAAACTTGATTTTTTT-----AA-ATTATCAATTTTTTAA 1 G-AAAATTATTGATTTTTAAAAATTAATTTTTTTAGAAAAATATTATCGA-TTTTTAA * 13733113 GGAAATTATTGATTTTT 1 GAAAATTATTGATTTTT 13733130 TTGGTGAAAG Statistics Matches: 105, Mismatches: 18, Indels: 13 0.77 0.13 0.10 Matches are distributed among these distances: 51 21 0.20 52 8 0.08 56 25 0.24 57 31 0.30 58 3 0.03 59 6 0.06 60 11 0.10 ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52 Consensus pattern (56 bp): GAAAATTATTGATTTTTAAAAATTAATTTTTTTAGAAAAATATTATCGATTTTTAA Left flanking sequence: Indices 13732445 -- 13732944 ACTCACCAGGCTCCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAAGAGGTC ATACGATTCCAGCTCCGATGTATACCTTTTTTCAATCGCATAGACAAACGTTTGATGCTCATTTT TAGGCCGCAATTTTGAAGAAAATGTGAATTGAAAATGCTATAGTTGTATGTTTTTTTTTTCGGCC ATGTCCTCCTAACTTGCACAGACACAAAAAAAAACAGAAAAACAATCGAATTAGTGAAATCTGAA ATTTTTATTCATACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAATTTGGTGAAAAA TGAACAAAAAATCAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAGTGGCCAACTCG TCGAGCTTCTGCTGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTGTCTTCTGGATC CTCTCCGGTTAAGGCTACGCGCCAGATCATTCGAGCGATAAACTG Right flanking sequence: Indices 13733130 -- 13733629 TTGGTGAAAGTGCTAATTTATTAATTTAATTTTTCGGGGAAACATTTTGATTTTTGTGATAATTT ATTGATTTTTCAAGCAGTTATTGATTTTGGAATATTATCGATTTTTGTGAAAAAGTATTGATTTT TTTTAAAATTTATCATTTTGTGTGAGAAATTATTGATTTCTGCAATATTTATTGATTTTTGAGCC AAATTTTTGATTTTTATGCATAATTATTAAATTTTGAGCAGTTTTAAAAGAGTTTGAATTTTGTG GAAAAATCACTGGTTTTTAAGAAATTTTATCAGTTTTTTATTTAAATTTTGAATTGGAGTAAAGA AGTTATCGATTTTTCTACAAAATTGACAATTTTTACGGAAAAACATGCACTTTTTAATTTAAAGT ACCAAGCTCTGCAAAAAAATGAAAAAATTAGTTATCGATTTTTTTCTTAAAAAATGTTTAAATAA AAATCGATACATTCCAATTAATAAAACTCACATTAAACCAATAAA Found at i:13733108 original size:16 final size:16 Alignment explanation
Indices: 13733064--13733112 Score: 56 Period size: 16 Copynumber: 3.1 Consensus size: 16 13733054 TTTTTGTGAA ** 13733064 AAATTATTGATTTTTT 1 AAATTATCAATTTTTT * * * 13733080 AAACT-TGATTTTTTT 1 AAATTATCAATTTTTT 13733095 AAATTATCAATTTTTT 1 AAATTATCAATTTTTT 13733111 AA 1 AA 13733113 GGAAATTATT Statistics Matches: 25, Mismatches: 7, Indels: 2 0.74 0.21 0.06 Matches are distributed among these distances: 15 11 0.44 16 14 0.56 ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57 Consensus pattern (16 bp): AAATTATCAATTTTTT Left flanking sequence: Indices 13732564 -- 13733063 ATGCTCATTTTTAGGCCGCAATTTTGAAGAAAATGTGAATTGAAAATGCTATAGTTGTATGTTTT TTTTTTCGGCCATGTCCTCCTAACTTGCACAGACACAAAAAAAAACAGAAAAACAATCGAATTAG TGAAATCTGAAATTTTTATTCATACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAAT TTGGTGAAAAATGAACAAAAAATCAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAG TGGCCAACTCGTCGAGCTTCTGCTGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTG TCTTCTGGATCCTCTCCGGTTAAGGCTACGCGCCAGATCATTCGAGCGATAAACTGGAAATTTAT TGATTTTTTAGAAAGATATTATTGATTTTGGAAAATTTTATCGATTTTTAAGAAAATTATTGATT TTTAAAAATTAATTTTTTTAGAAAAATATTATTGATTTTTGTGAA Right flanking sequence: Indices 13733113 -- 13733612 GGAAATTATTGATTTTTTTGGTGAAAGTGCTAATTTATTAATTTAATTTTTCGGGGAAACATTTT GATTTTTGTGATAATTTATTGATTTTTCAAGCAGTTATTGATTTTGGAATATTATCGATTTTTGT GAAAAAGTATTGATTTTTTTTAAAATTTATCATTTTGTGTGAGAAATTATTGATTTCTGCAATAT TTATTGATTTTTGAGCCAAATTTTTGATTTTTATGCATAATTATTAAATTTTGAGCAGTTTTAAA AGAGTTTGAATTTTGTGGAAAAATCACTGGTTTTTAAGAAATTTTATCAGTTTTTTATTTAAATT TTGAATTGGAGTAAAGAAGTTATCGATTTTTCTACAAAATTGACAATTTTTACGGAAAAACATGC ACTTTTTAATTTAAAGTACCAAGCTCTGCAAAAAAATGAAAAAATTAGTTATCGATTTTTTTCTT AAAAAATGTTTAAATAAAAATCGATACATTCCAATTAATAAAACT Found at i:13733110 original size:75 final size:74 Alignment explanation
Indices: 13732957--13733122 Score: 191 Period size: 75 Copynumber: 2.2 Consensus size: 74 13732947 AATTTATTGA * * * 13732957 TTTTTTAGAAAGATATTATTGATTTTGGAAAATTTTATCGATTTTTAAGAAAATTATTGATTTTT 1 TTTTTTAGAAAAATATTATTGATTTTGGAAAATATTATCGATTTTTAAGAAAATGATT-ATTTTT * 13733022 AAAAATTAAT 65 AAAAATCAAT * * ** 13733032 TTTTTTAGAAAAATATTATTGATTTTTGTGAAAA-ATTATTGATTTTTTA-AACTTGATT-TTTT 1 TTTTTTAGAAAAATATTATTGA-TTTTG-GAAAATATTATCGATTTTTAAGAAAATGATTATTTT * 13733094 TAAATTATCAAT 64 TAAA-AATCAAT * * * 13733106 TTTTTAAGGAAATTATT 1 TTTTTTAGAAAAATATT 13733123 GATTTTTTTG Statistics Matches: 76, Mismatches: 12, Indels: 7 0.80 0.13 0.07 Matches are distributed among these distances: 73 8 0.11 74 19 0.25 75 27 0.36 76 17 0.22 77 5 0.07 ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52 Consensus pattern (74 bp): TTTTTTAGAAAAATATTATTGATTTTGGAAAATATTATCGATTTTTAAGAAAATGATTATTTTTA AAAATCAAT Left flanking sequence: Indices 13732457 -- 13732956 CCTCAACAATCTTAATCTCCTTCTCTTCTTCAAGTCCAGCTTCCAAAGAGGTCATACGATTCCAG CTCCGATGTATACCTTTTTTCAATCGCATAGACAAACGTTTGATGCTCATTTTTAGGCCGCAATT TTGAAGAAAATGTGAATTGAAAATGCTATAGTTGTATGTTTTTTTTTTCGGCCATGTCCTCCTAA CTTGCACAGACACAAAAAAAAACAGAAAAACAATCGAATTAGTGAAATCTGAAATTTTTATTCAT ACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAATTTGGTGAAAAATGAACAAAAAAT CAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAGTGGCCAACTCGTCGAGCTTCTGC TGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTGTCTTCTGGATCCTCTCCGGTTAA GGCTACGCGCCAGATCATTCGAGCGATAAACTGGAAATTTATTGA Right flanking sequence: Indices 13733123 -- 13733622 GATTTTTTTGGTGAAAGTGCTAATTTATTAATTTAATTTTTCGGGGAAACATTTTGATTTTTGTG ATAATTTATTGATTTTTCAAGCAGTTATTGATTTTGGAATATTATCGATTTTTGTGAAAAAGTAT TGATTTTTTTTAAAATTTATCATTTTGTGTGAGAAATTATTGATTTCTGCAATATTTATTGATTT TTGAGCCAAATTTTTGATTTTTATGCATAATTATTAAATTTTGAGCAGTTTTAAAAGAGTTTGAA TTTTGTGGAAAAATCACTGGTTTTTAAGAAATTTTATCAGTTTTTTATTTAAATTTTGAATTGGA GTAAAGAAGTTATCGATTTTTCTACAAAATTGACAATTTTTACGGAAAAACATGCACTTTTTAAT TTAAAGTACCAAGCTCTGCAAAAAAATGAAAAAATTAGTTATCGATTTTTTTCTTAAAAAATGTT TAAATAAAAATCGATACATTCCAATTAATAAAACTCACATTAAAC Found at i:13733318 original size:40 final size:38 Alignment explanation
Indices: 13733212--13733338 Score: 120 Period size: 39 Copynumber: 3.3 Consensus size: 38 13733202 TTTCAAGCAG * * 13733212 TTATTGATTTTGGAATA-TTATCGATTTTTGTGAAAAA 1 TTATTGATTTTGCAATATTTATTGATTTTTGTGAAAAA * ** * * * 13733249 GTATTGATTTTTTTTAAAATTTA-TCATTTTGTGTGAGAAA 1 TTATTGA--TTTTGCAATATTTATTGATTTT-TGTGAAAAA * ** 13733289 TTATTGATTTCTGCAATATTTATTGATTTTTGAGCCAAA 1 TTATTGATTT-TGCAATATTTATTGATTTTTGTGAAAAA * 13733328 TTTTTGATTTT 1 TTATTGATTTT 13733339 TATGCATAAT Statistics Matches: 68, Mismatches: 16, Indels: 11 0.72 0.17 0.12 Matches are distributed among these distances: 37 6 0.09 38 4 0.06 39 35 0.51 40 23 0.34 ACGTcount: A:0.28, C:0.05, G:0.14, T:0.53 Consensus pattern (38 bp): TTATTGATTTTGCAATATTTATTGATTTTTGTGAAAAA Left flanking sequence: Indices 13732712 -- 13733211 TTCATACAATAGTCTAGCGACAATACAAAGGAATACAACAAAAAAATTTGGTGAAAAATGAACAA AAAATCAATAAATTACACGTTCTTCGGTTTAAGATGGCACTTTTCAGTGGCCAACTCGTCGAGCT TCTGCTGATTGAGCCCACTGACAGCGGTTGTGTCCCATTCACGATTGTCTTCTGGATCCTCTCCG GTTAAGGCTACGCGCCAGATCATTCGAGCGATAAACTGGAAATTTATTGATTTTTTAGAAAGATA TTATTGATTTTGGAAAATTTTATCGATTTTTAAGAAAATTATTGATTTTTAAAAATTAATTTTTT TAGAAAAATATTATTGATTTTTGTGAAAAATTATTGATTTTTTAAACTTGATTTTTTTAAATTAT CAATTTTTTAAGGAAATTATTGATTTTTTTGGTGAAAGTGCTAATTTATTAATTTAATTTTTCGG GGAAACATTTTGATTTTTGTGATAATTTATTGATTTTTCAAGCAG Right flanking sequence: Indices 13733339 -- 13733838 TATGCATAATTATTAAATTTTGAGCAGTTTTAAAAGAGTTTGAATTTTGTGGAAAAATCACTGGT TTTTAAGAAATTTTATCAGTTTTTTATTTAAATTTTGAATTGGAGTAAAGAAGTTATCGATTTTT CTACAAAATTGACAATTTTTACGGAAAAACATGCACTTTTTAATTTAAAGTACCAAGCTCTGCAA AAAAATGAAAAAATTAGTTATCGATTTTTTTCTTAAAAAATGTTTAAATAAAAATCGATACATTC CAATTAATAAAACTCACATTAAACCAATAAACATTCATCGCAAAAATGATCAAAAGCATTGCACC GAGCAACGGGAAGAACGGAGCATCCTGTGGTCCCAAGTACACTGCTCCATAAATTGTAGCATATA ACAATTTACAAGTGTACCAGTACAAACGGAAAATCACCCAAATGATAGCAAATAGTATGAATGCA GCATTTCCCATTAGGAAATAATATTTGTAATATTGACGATTTGTT Found at i:13734411 original size:11 final size:11 Alignment explanation
Indices: 13734395--13734417 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 13734385 TTTTTGAATT * 13734395 TATTTATGAAG 1 TATTTAGGAAG 13734406 TATTTAGGAAG 1 TATTTAGGAAG 13734417 T 1 T 13734418 TTATGAAAAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43 Consensus pattern (11 bp): TATTTAGGAAG Left flanking sequence: Indices 13733895 -- 13734394 GTGTAGGAAGAGGACCAGGGCGCCGGGGAGGGTGAAACTGTAAAAAAATCAATAATTTTCACGAA AAATCGATAATAACCAACTTTTGGAAAAGATGGACAAATTAACGGCGGTTATCGATTTTTGTTGG AAAATCTAATTGTTTTCTATTTTTTTGCCGGAAATTTTTTTTTTTGAACTCACACAAAAAATCAA TAGAATTTCGTTTTCAAAATTTTCCTACTTTGTGGAAAAACGTCAGAGTTTTCATCGAAATTTTT TTAAAGTTTCAGCCATTTTCAAGTTTTAGGCGTTTCCGACAACTTTTACGAAAAATCGATAAAAA TTGATTTTTCTGGAGATCGAGGAAATAAAATATTGTGTAATTTTGTAAAAGTTTGGTTTTTTAGT ATATTTGTTTTCACAAAAAATCAATAATTTTTAATTTTTAAAATTTTTAAAACAATTTTTCAAGA ATTTAAATATTCCCGATAGTTTTCGGTCGGAAAATTTTTTGAATT Right flanking sequence: Indices 13734418 -- 13734917 TTATGAAAAAAAGGAGTTTAACTCTCCATCACGGGAAAATTTTTTTGCAAATTTTTTCGTCCAAA AAAAAAAGGAAAAAAAAGGGTCCAGAAAAAACCAACTCTCCCCCACGGGAAAATTTTTTTGCAAA TTTTTTCGTCCAAAAAAAAAGGAAAAAAAAGGCGTTTCCGACATTTTTAACGAAAAGGTGTCGGA GGTCGATGATTATTTGTGAATTTCCAATTAAATACTAATAAATTAAAAAATACGTTAATGATCGT ATTTTGTAGTTAAAAAGTTGTCAAAACCCTAATGGGGTTATTCAAGTAATGTCAGAAAATTAAAA AGTGTAGAAAAATTACGTCACAACTGTATTCAAGTATATAAAAACATGTATTTAAATACATTTGT GACGTCACAAATGTATTTAAATACATTTTGCTACATTACTTGAATAACCGCATAAAACAAAAAAT TCCACTAAAAATCAATAATCAATCATAAATACTCACTTATCAACA Found at i:13734798 original size:14 final size:14 Alignment explanation
Indices: 13734776--13734803 Score: 42 Period size: 14 Copynumber: 2.0 Consensus size: 14 13734766 CTGTATTCAA 13734776 GTATATAAAAACAT 1 GTATATAAAAACAT * * 13734790 GTATTTAAATACAT 1 GTATATAAAAACAT 13734804 TTGTGACGTC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 14 12 1.00 ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36 Consensus pattern (14 bp): GTATATAAAAACAT Left flanking sequence: Indices 13734276 -- 13734775 TTTTTTAGTATATTTGTTTTCACAAAAAATCAATAATTTTTAATTTTTAAAATTTTTAAAACAAT TTTTCAAGAATTTAAATATTCCCGATAGTTTTCGGTCGGAAAATTTTTTGAATTTATTTATGAAG TATTTAGGAAGTTTATGAAAAAAAGGAGTTTAACTCTCCATCACGGGAAAATTTTTTTGCAAATT TTTTCGTCCAAAAAAAAAAGGAAAAAAAAGGGTCCAGAAAAAACCAACTCTCCCCCACGGGAAAA TTTTTTTGCAAATTTTTTCGTCCAAAAAAAAAGGAAAAAAAAGGCGTTTCCGACATTTTTAACGA AAAGGTGTCGGAGGTCGATGATTATTTGTGAATTTCCAATTAAATACTAATAAATTAAAAAATAC GTTAATGATCGTATTTTGTAGTTAAAAAGTTGTCAAAACCCTAATGGGGTTATTCAAGTAATGTC AGAAAATTAAAAAGTGTAGAAAAATTACGTCACAACTGTATTCAA Right flanking sequence: Indices 13734804 -- 13735303 TTGTGACGTCACAAATGTATTTAAATACATTTTGCTACATTACTTGAATAACCGCATAAAACAAA AAATTCCACTAAAAATCAATAATCAATCATAAATACTCACTTATCAACATAAGACAGAAAAAGTA ATCCAAGTGCAATAAAATGGTGTACAAACATTAGCCATGAATCCTTTCTCCATAAATCCATAAAC AATGTGGCATAAATTGAATGAATATAGAACGCCGATTGAACTGCATATATCACTTGTACCTGCCA ATGCATTTTTGGACGGCCCCCGGATTCCCATTCTAAAACCATTTTAAATTTAGTACATCAAGAAA CATTTGTTATAACATACCAATCCACATTGACAGGGGGTCATTGAAAATGTCATGTGAATCTACAC ACATGTGGAAGTAGAATGCAAATATCCATACAGTTCCATAATAGGTCAATTTCCAGAACGATTCG GGTACTTTATGGGCAAATCGGGGGTATATGTTGTGTTGTTGGGTC Found at i:13737639 original size:10 final size:11 Alignment explanation
Indices: 13737626--13737649 Score: 41 Period size: 11 Copynumber: 2.3 Consensus size: 11 13737616 AATTCCAAAA 13737626 CAAT-TTTTTT 1 CAATATTTTTT 13737636 CAATATTTTTT 1 CAATATTTTTT 13737647 CAA 1 CAA 13737650 ACATAAGAGG Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 10 4 0.31 11 9 0.69 ACGTcount: A:0.29, C:0.12, G:0.00, T:0.58 Consensus pattern (11 bp): CAATATTTTTT Left flanking sequence: Indices 13737126 -- 13737625 TGCCAAAATAGGTGTTTTCTAAAAGTCAAACCGACATTCCGTGGGGCTCTGAACAACAAAACCTC CTGTCTTAAAACGAATGTATCCAATTCTAGAGGCGAGGTATTAAAAAGCCTTCAACTACAACCAT GTTAAGTTCGAAGCAATAAACGTTTTCATAGTTGCAGGCATTGTCCAGAACTGAGATATTGTTGA GCACAGATCTAGCATATTATGGTTGTCTTGGAGCTCACATCTCCGCAGCCACTAAAGATAACTAG AAAGTACCCACTAACAAAATGTTTTTCATATTGTTGCCAACAACTTTTCAATTGTCTACATTTTA TTAATTCAAACACCAACAGAGTTATAAGTCTTAGAAAGTAAGACGTCTATACGCTCAGTCAACTA TAATTTGATTAATTGTTTAGCTAAAAATGCAATATGAATGCCCAAACTTGTAAGAACTACCAAAA TTGTGTTTTCTATAAAGTTAAACACTTTTTGAAAAAATTCCAAAA Right flanking sequence: Indices 13737650 -- 13738149 ACATAAGAGGGAAAATTTTAGAGCTGAAGATTCAGTTCATAAGGGGGGACCCTTGTGATCCTTTG GAGCTGAAGATTCAGTTCATAAGGGGGGATCCTTATGATATTTTGGAGTCTTATCAGTGTTTTTA GAATTTGAAAAAAACCGGAATTTTTTTGAGAATTTATTTTTTAAAAATTAAAAAAAAAATTTTTT TTTAATTGTCTTTAAAATTTGCAAATACAGTGTGAAACTATCACTTTCCGTATAAAAATATTTGG AAGAAAGAAAAAACTAAATTTGAATGCGCGCGCAGAAGGTGTTCAACAGAGCGCGTTTGCTTTTC GAGCCTTTCGGGCGCATTAATTTGAAGTCTGTTAATAAATGCAAAAAAGTCGATGAACTACTTAA TTAGCGCCGCAACTAGTTCTCACACGCGCAAGGTTGGCTAAACAGGTAACGTTTCAGATCGTGAA GCAGAAGGTCAAGGGTTCAACTCCGGGTGGTGGCAAGAAAATTTC Found at i:13737734 original size:45 final size:45 Alignment explanation
Indices: 13737666--13737762 Score: 159 Period size: 45 Copynumber: 2.2 Consensus size: 45 13737656 GAGGGAAAAT * * * 13737666 TTTAGAGCTGAAGATTCAGTTCATAAGGGGGGACCCTTGTGATCC 1 TTTGGAGCTGAAGATTCAGTTCATAAGGGGGGACCCTTATGATAC * * 13737711 TTTGGAGCTGAAGATTCAGTTCATAAGGGGGGATCCTTATGATAT 1 TTTGGAGCTGAAGATTCAGTTCATAAGGGGGGACCCTTATGATAC 13737756 TTTGGAG 1 TTTGGAG 13737763 TCTTATCAGT Statistics Matches: 47, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 45 47 1.00 ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32 Consensus pattern (45 bp): TTTGGAGCTGAAGATTCAGTTCATAAGGGGGGACCCTTATGATAC Left flanking sequence: Indices 13737166 -- 13737665 GTGGGGCTCTGAACAACAAAACCTCCTGTCTTAAAACGAATGTATCCAATTCTAGAGGCGAGGTA TTAAAAAGCCTTCAACTACAACCATGTTAAGTTCGAAGCAATAAACGTTTTCATAGTTGCAGGCA TTGTCCAGAACTGAGATATTGTTGAGCACAGATCTAGCATATTATGGTTGTCTTGGAGCTCACAT CTCCGCAGCCACTAAAGATAACTAGAAAGTACCCACTAACAAAATGTTTTTCATATTGTTGCCAA CAACTTTTCAATTGTCTACATTTTATTAATTCAAACACCAACAGAGTTATAAGTCTTAGAAAGTA AGACGTCTATACGCTCAGTCAACTATAATTTGATTAATTGTTTAGCTAAAAATGCAATATGAATG CCCAAACTTGTAAGAACTACCAAAATTGTGTTTTCTATAAAGTTAAACACTTTTTGAAAAAATTC CAAAACAATTTTTTTCAATATTTTTTCAAACATAAGAGGGAAAAT Right flanking sequence: Indices 13737763 -- 13738262 TCTTATCAGTGTTTTTAGAATTTGAAAAAAACCGGAATTTTTTTGAGAATTTATTTTTTAAAAAT TAAAAAAAAAATTTTTTTTTAATTGTCTTTAAAATTTGCAAATACAGTGTGAAACTATCACTTTC CGTATAAAAATATTTGGAAGAAAGAAAAAACTAAATTTGAATGCGCGCGCAGAAGGTGTTCAACA GAGCGCGTTTGCTTTTCGAGCCTTTCGGGCGCATTAATTTGAAGTCTGTTAATAAATGCAAAAAA GTCGATGAACTACTTAATTAGCGCCGCAACTAGTTCTCACACGCGCAAGGTTGGCTAAACAGGTA ACGTTTCAGATCGTGAAGCAGAAGGTCAAGGGTTCAACTCCGGGTGGTGGCAAGAAAATTTCTCC GAGAACGGTAGCAGGCTTAGAAGAGGTGTCTAGATTCCACAGGGTACTGTGGAAAAAGTGAACGA ACAGGGTCGGCAGGGGAGCTGAACGAGAATAGAAAATCTTTTTTT Found at i:13738304 original size:16 final size:15 Alignment explanation
Indices: 13738276--13738312 Score: 42 Period size: 14 Copynumber: 2.4 Consensus size: 15 13738266 TCCGGAATCC * 13738276 AAAATCACATTTTCCAA 1 AAATTCACATTTT--AA 13738293 AAATTCAC-TTTTAA 1 AAATTCACATTTTAA 13738307 AAATTC 1 AAATTC 13738313 CGAGTCTATA Statistics Matches: 19, Mismatches: 1, Indels: 3 0.83 0.04 0.13 Matches are distributed among these distances: 14 8 0.42 16 4 0.21 17 7 0.37 ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35 Consensus pattern (15 bp): AAATTCACATTTTAA Left flanking sequence: Indices 13737776 -- 13738275 TTTAGAATTTGAAAAAAACCGGAATTTTTTTGAGAATTTATTTTTTAAAAATTAAAAAAAAAATT TTTTTTTAATTGTCTTTAAAATTTGCAAATACAGTGTGAAACTATCACTTTCCGTATAAAAATAT TTGGAAGAAAGAAAAAACTAAATTTGAATGCGCGCGCAGAAGGTGTTCAACAGAGCGCGTTTGCT TTTCGAGCCTTTCGGGCGCATTAATTTGAAGTCTGTTAATAAATGCAAAAAAGTCGATGAACTAC TTAATTAGCGCCGCAACTAGTTCTCACACGCGCAAGGTTGGCTAAACAGGTAACGTTTCAGATCG TGAAGCAGAAGGTCAAGGGTTCAACTCCGGGTGGTGGCAAGAAAATTTCTCCGAGAACGGTAGCA GGCTTAGAAGAGGTGTCTAGATTCCACAGGGTACTGTGGAAAAAGTGAACGAACAGGGTCGGCAG GGGAGCTGAACGAGAATAGAAAATCTTTTTTTTTTTCCGGAATCC Right flanking sequence: Indices 13738313 -- 13738812 CGAGTCTATATAGGAGGCGAAAACCGAGTCTAAATAGAAGCAAAACGCACTTATATTTAGAAAAG AGTAGAACTATTTAGAAGAAGAAGGTACTTCTAATTAGAAGAAGTAGACCTATTTAGTTAAAAAG CTCTGCTATTTAGATGAAAAAGCATTTCTAATTATGTCGTGTTAGGAGCTAGCGCCATTTCTAAA TATATCTGCTTTTTTCTTCTAAATAGAAGCGAAAACGTTTATCTGAGTTATGTTATTTTTTGTTA TTTTCCACCGATTTTTAATGTTTTCGGTGTATTTTTGCTTGAATTTCAGAGAAAAAGTCAAAAAA TGCAAATTTTCGATTGAAAAGTAAGCGTGCAGGCATAAATCAGTGAAATTAATTAATTCAGTTTC GAAATCGTTTAAAACTGTTACTTTGTCATTTTTACGCCTGTACGCGTGCTTTTTATTCAAAAATT TGCATTTATCTTAACTTTTTCTCTAAAATTCGAGCAAAAATACAC Found at