TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:4602238 original size:12 final size:11 Alignment explanation
Indices: 4602223--4602250 Score: 40 Period size: 12 Copynumber: 2.5 Consensus size: 11 4602213 AAAACACGAA 4602223 AATTTAAAAATT 1 AATTTAAAAA-T * 4602235 AATTGAAAAAT 1 AATTTAAAAAT 4602246 AATTT 1 AATTT 4602251 TTTAAGCCTA Statistics Matches: 14, Mismatches: 2, Indels: 1 0.82 0.12 0.06 Matches are distributed among these distances: 11 5 0.36 12 9 0.64 ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39 Consensus pattern (11 bp): AATTTAAAAAT Left flanking sequence: Indices 4601723 -- 4602222 CTGGAAATTGGGAAAGAATTAAGGAAAATTGAGGAAAAAATTAATTTTAAAAAAACCTTCTCAAA CTGCTTGGCGAACCGTTTCTGTGGTCGTGGTAGATCCTCAATATCGATTGTTTCCAGCATCTCAT TGTCCTTCTTTTTCTGGAAAAATTTAGCTTTTTTTATAGATTTTGTATCCAAAAAAAAAAAAAAC ACTTTTTTTGCAAATTTTCGGCTTTTCCGGATAAATTCACGGTTTTCAATCATTTTCCGTTAACA AATCCTTGGAAAATGGTATATTATAGATTATTAGGCTAATTTCAGAGTTTTAGCTGTTTTTTTCG GGGATCAAGTCTTTTTTTCAGTTGTAGAACTTGAAATATTCGCTGAAACTTCAAAACTGGCCTGG AAATCGATTATTTAATATTTTGAAAATTTTTTTGAAGGAAAAAAAGTCTGAAATTGCAAAAAAAA CTGTCTGAATATTACAACAAAAAAAATTGAAAAAAAAAACACGAA Right flanking sequence: Indices 4602251 -- 4602750 TTTAAGCCTAGAAAAATAACCTCTAAACTCTACAACTTAAATATAAACTAAATTAAATCTAAATT TATCTCCAAACTAAAGGAAAACAAAACCAGATGCGAAGCTGGCAGAGCAAAATTGTTTAGATTAT ATTCCAAACTTTACTTTTTTTTGTTGATTTTTTGAACTAAAATCGAATCTTGGATCGATGAATTT CACGAATTTTAGGCTTTTCCAGACGAAAAAACACTCCAAAAAATTTAAAAAAACTCACTTCAATT TGTGAGAACTTCGTCGTCTCCGTCGGCAATTTTTCCTTTGTGGCAGCTAGACGGCTCGTGCTGAC AAGCCTTCGGAATGCCAGTGTCCGGCAATTGAGCACAGCGAGCATCTGATATTTATTTATTTTTT TTTTCGATTAAATTGCATTATTGTTGTCAATATCACAAGGTGTTCAAATATCAAGGGAAAATGTT TGAAGCAGCGGCATGAGATTTATATTGATTTTCATATGAAATGGG Found at i:4605884 original size:11 final size:11 Alignment explanation
Indices: 4605865--4605887 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 4605855 CGTTGATGCG 4605865 AAATATTCATT 1 AAATATTCATT * 4605876 AAATTTTCATT 1 AAATATTCATT 4605887 A 1 A 4605888 TTGCTTCTTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48 Consensus pattern (11 bp): AAATATTCATT Left flanking sequence: Indices 4605365 -- 4605864 TGGGATTTCAGAAGTTTCGAGTTTCCCGCCGCCTTATGAGAAATATAAATGAGCTCAATTTGAAA ATTTTTATTTCTCTATCCGATATCTCTTTTTCCTACTTTTCTGGAAACAACTAAAAATAAACAAT TCTTATGTATATATTTGTCATCCAACTTTCTAGTTTACAATTCCCTTTTTCTTCTTCCAGTGACC AGAAATTATGTACACCCTTTCTATTTTCACATTACCCCCTGAAAATAACAAAGTTAGGTTTTTAG CCGATTTTCTGAACAATTATTTGTTTTTCGCAATTTTCCCTATGAGCCTTTAAACCAGTGGTACT GTAATTTGAAATTTCCCACAAAAAAAAACAGTAGATAAATTATTACGCAGGCACGAAGTTTTACG AATTTTGAGACAAAAATACGGTGCCTGGTCTCACGACAAATTTTAGTTTAATTACGAAATAGTGT GTGCGCCTTTGAAGAGTAATGTAATTTCAAACTTTCGTTGATGCG Right flanking sequence: Indices 4605888 -- 4606387 TTGCTTCTTCTTCATTTAATAAAATTTAACTGTTTTTATTGCTAGATTTGAGTTTTAAAAAATAT TTTATATGGGAAAACGATCAAAATAGATTTTAAAAAAAAGAAATTAAAGTTTGTAATTACAGTAC TCTTTAAAGGTGCACGCCTTTTCGCATTTACCAAGAATTTGTCGTTTCGAGACCGAGTACCGTAT TTTTAGAGCGATAATCGCAAAACTTCGTGTCGGAATATTATTGGCCATTTGAAAAAATTGAAAAT AAAACAATACTGTTCTCAAGAAACGTTTTGTAATTTTTCACACAAAACCTCATCTTTATGGTATT GGCACGAACGAAAATTTTCCTCTACCGTATTTTTATGTGCTTCCGATGATTTTTTTACAACACGA ATCATCGTAAAATTAAATTAACTTAAACGGAAAAATCGGACTAAGAAATACGCTCGGGTACTGTA GCTGAAGGTTTACATTCGCGCCAAGACCCGGGGGCTTTTATGTTC Found at i:4609694 original size:14 final size:14 Alignment explanation
Indices: 4609671--4609698 Score: 49 Period size: 14 Copynumber: 2.0 Consensus size: 14 4609661 GGCGTTTACA 4609671 CTTAAATTGCCTAC 1 CTTAAATTGCCTAC * 4609685 CTTGAATTGCCTAC 1 CTTAAATTGCCTAC 4609699 TTATAAATCC Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.25, C:0.29, G:0.11, T:0.36 Consensus pattern (14 bp): CTTAAATTGCCTAC Left flanking sequence: Indices 4609171 -- 4609670 GCAGTGAGTTTAAAGGAGGTTCGGCTGAAATTACGGTAGAATACAATCAGATTCACCACGCCACC GTTCACTGGAAACTCCGATAGTCCTTCAGCCGGCAACTCGATTTGCACTTGCCAATTTGACAACT ACAGTTCTACGGTTAGACTTTTGGGATGACAATGACCCGAACTCAATGTAAGTTGGAGTTTTTTT CCAAAAAAAAAATTATAATAAATTTTCAGATTCTTCTGTAAATCAACTTTCAACATAGTGACCCA ATGCCTGGATCTACCTGAAAAAGTGATAAAAACTGTCAAGACCCACTTGGAAGGAGAAGAAGATC TCACTGATATTGCACCAATGATCATGTCAGTTCGAGAGGATCCTGTGTACAAAACGGAAGGATCT ACACCGTTTCTAGCTAGTTTACTAGTGGCTTTTGTGAATCAAGGTGAGGATTATTGATTTTTTTT TTAAATTGAAAAAAGACCCGTTGCATGGGTAGGCAGGCGTTTACA Right flanking sequence: Indices 4609699 -- 4610198 TTATAAATCCAAACTTTTCTCAGGCAACTACGATAGCCGATACCGAGTGTTTCTCCGACACCTGA CAACTCTCTTGGGAGTTGTGTGGACTGAATTTGAAGATGTTGAAGACTCGTTGGCCAGTACTTTA TTGGAAGAACAATTTGTTGAATCTGAGTAAGTCATTAATTGAAATACCCCTCTCATAATAACCAT TTAACTCCATTTTTGATATTTCAGAGTAACTAGAAAATTGTCTGAAGGGTAGGTTTCATCATGTT GTAATTGTGATTGTGAAGTAGATCAGAACTTTTCAATATCTAAACTATTATAAAACAAAAGTTTT TTTTCAGACATAGTAGAACAGTTCGAGAAAAAACGGCCCGAAACAAGAAGATCAAGAGATATCTG ATGATCGGAGCAGCTGGCGGAGTTGGTGGAGTACTCATCGGTCTTACTGGAGGGCTCGCGGCTCC ACTTGTTGCCGCTTCAGCTGGAATGCTTATAGGTGGAGGTGCAGT Found at i:4612268 original size:12 final size:11 Alignment explanation
Indices: 4612248--4612273 Score: 36 Period size: 12 Copynumber: 2.3 Consensus size: 11 4612238 GACAAGCTTT * 4612248 AATTTTCTGATA 1 AATTCTCTGA-A 4612260 AATTCTCTGAA 1 AATTCTCTGAA 4612271 AAT 1 AAT 4612274 CTGTAAATCT Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 11 4 0.31 12 9 0.69 ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42 Consensus pattern (11 bp): AATTCTCTGAA Left flanking sequence: Indices 4611748 -- 4612247 AAGACAGTGTGGTCGACCTGACACAACTCGAAGGTCCACACGAAGCAACTGGTCAGGCGGAAGAA GCTATCAATTATCAGTCAACCGGTGAAGAGGAAGAGCATCCAATTGTGCATCCGATAAATTTAGA AAATATCCATGAAGTCAAAGTTTTAGATAGTCCTCACAAAAACGAATTCTGATTATTTTTCTCCG GTTTTAGACATTCCATTGTTCATTCAGGGTATCATCATTCAAAAACTCGGTGAGAATCCGAGAAT TCATTTTTTCAAATAAAGTTATTTGAGTTTTTTCCACCGTACGAACAGAAGAAACATAAAAAGAC AAACAACGGTTCTATTTAACTAGTAATCGAGAGAAAGGGATGTGCGGCCGTTTTTGAAGTTGAAT ACAAATATATCTTACAAACATGTGTGCTGTAGACAGATTTCTGGGCTTTTGCTAGTCTTTCAGTC AAAAAATTCAAAGTTTTTTGATGGCAGAAATCTTTGACAAGCTTT Right flanking sequence: Indices 4612274 -- 4612773 CTGTAAATCTTTTCAGTTCCACGAAGCGGGCTTTGAAAGATAATCTGGATTTTTTTTCAGAAAAA CATTTTCAGATTTGGATCAAAATATCATTTTTCAACTTCTAGCACAGTTATAGCAGATTTCTAGC AGTTAAGAAATCGGAAAGTCTTGGGCTTACAATTGGCTTAGGCTCAGGCTTAGGTTTAGGCTTAG TCTTAATCTTAAGCCATGGCTTAGGTTTAGGCTTAGGATTGTATGCGGGCTTGAATTCGGGCATA GGTTTTAAGCCTGCATTGCGCCTACCTACCTCTAAATTTGGACAAAAAAATCACAGCAACCGACC TTTTCTGGGTTCCGCGGCGCATTAAAAAACTGCATATATAAGAACATCCTGGTAGGCACGGTTGT AGGCACGAGGTATGCGTAAGGCGCCTTGTTGGCAGGCAGGAAGTTTTGTGCCTAAATTTAGATCT CAGAATTGATAAAATCTATTTAGTCTAGACTTAATTCATTTGAAA Found at i:4612403 original size:11 final size:11 Alignment explanation
Indices: 4612375--4612405 Score: 41 Period size: 11 Copynumber: 2.8 Consensus size: 11 4612365 ATTTTTCAAC * 4612375 TTCTAGCACAG 1 TTCTAGCAGAG * * 4612386 TTATAGCAGAT 1 TTCTAGCAGAG 4612397 TTCTAGCAG 1 TTCTAGCAG 4612406 TTAAGAAATC Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32 Consensus pattern (11 bp): TTCTAGCAGAG Left flanking sequence: Indices 4611875 -- 4612374 AGAAAATATCCATGAAGTCAAAGTTTTAGATAGTCCTCACAAAAACGAATTCTGATTATTTTTCT CCGGTTTTAGACATTCCATTGTTCATTCAGGGTATCATCATTCAAAAACTCGGTGAGAATCCGAG AATTCATTTTTTCAAATAAAGTTATTTGAGTTTTTTCCACCGTACGAACAGAAGAAACATAAAAA GACAAACAACGGTTCTATTTAACTAGTAATCGAGAGAAAGGGATGTGCGGCCGTTTTTGAAGTTG AATACAAATATATCTTACAAACATGTGTGCTGTAGACAGATTTCTGGGCTTTTGCTAGTCTTTCA GTCAAAAAATTCAAAGTTTTTTGATGGCAGAAATCTTTGACAAGCTTTAATTTTCTGATAAATTC TCTGAAAATCTGTAAATCTTTTCAGTTCCACGAAGCGGGCTTTGAAAGATAATCTGGATTTTTTT TCAGAAAAACATTTTCAGATTTGGATCAAAATATCATTTTTCAAC Right flanking sequence: Indices 4612406 -- 4612905 TTAAGAAATCGGAAAGTCTTGGGCTTACAATTGGCTTAGGCTCAGGCTTAGGTTTAGGCTTAGTC TTAATCTTAAGCCATGGCTTAGGTTTAGGCTTAGGATTGTATGCGGGCTTGAATTCGGGCATAGG TTTTAAGCCTGCATTGCGCCTACCTACCTCTAAATTTGGACAAAAAAATCACAGCAACCGACCTT TTCTGGGTTCCGCGGCGCATTAAAAAACTGCATATATAAGAACATCCTGGTAGGCACGGTTGTAG GCACGAGGTATGCGTAAGGCGCCTTGTTGGCAGGCAGGAAGTTTTGTGCCTAAATTTAGATCTCA GAATTGATAAAATCTATTTAGTCTAGACTTAATTCATTTGAAAATGCAAAAAAAAATTCCAGCGT CAAAAAAAATTTATCAAAATTTGATCTTTGAGTTGCAAAAAAATGCCAAGTTATTAAATAGAACA CCATTCTCTTTACTTTCTCTCCTCTTTTTTTCATTTACTTTCACT Found at i:4621478 original size:12 final size:13 Alignment explanation
Indices: 4621463--4621487 Score: 43 Period size: 12 Copynumber: 2.0 Consensus size: 13 4621453 CTGAAAAATT 4621463 AAAATTAA-TTTG 1 AAAATTAAGTTTG 4621475 AAAATTAAGTTTG 1 AAAATTAAGTTTG 4621488 TCTCATTTCT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 12 8 0.67 13 4 0.33 ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40 Consensus pattern (13 bp): AAAATTAAGTTTG Left flanking sequence: Indices 4620963 -- 4621462 TTGCGAGAATTTGTAAAATGGCATCACGCCGATCGTATTTTTAATAAGAGACGAGAAGGGCGGGT AGGCCCTATTCTACTTGTCTGCCTACAGGCCTACTTACTGTCTTCTTTTTTTGTCATTTGAAGTA TTTAGTTTCAGTAAAATTTAGAAAAAATTCCACGTAGAAAAACAGCATGTCTACAAAAAAATTTT CGTCACAACCGAAACCCTTCTATTAGATTTAAACTGCCAATTGAAAAGTAGGTAAGTGGGCATGC AAAAGGCAGGCGCCTGTCACCTTGTAGGCAAATATTAGTCAACTGGAAATTGTTCCGTTGGACTT TACATATAATTTTTCTAATTAACAATACTCTTATTTATTGAGCAGCTACTTACCATTGATATCAT CCAGCTCCTCTTGGTTCTCGACATTCGTAATAACTGCGTCATAATCTAGGCAAACTGATCTTGCG ATAGGTCGATCATAGACATCCTCGTTTTCTATTACCTGAAAAATT Right flanking sequence: Indices 4621488 -- 4621987 TCTCATTTCTAAATTCAGTAGCGGGCAGAAATTTGGGATCGCGATAAACCACTAAACTTTTGAAA AATTATTTCCTTTAATCCACCTTCATACACCAGTTCTTCGTGAACTTATTCCTCTGCGTCGGCTT CCTCTCATACAACTTGAATCCTTTCGGACATACAACTTCTTTCTCTGTTGCATTAGATGCTTCAA CAACGCCGCATAAGGCAACAATAAGAATCAGAAAAACACTTCTCATCGTCGTCGAGAAATAAAGA TGTCGAGTGAAGACAATTTGATCTATATAGGGGAGGTTGACTTTTAGTCTTCACATCATCTTGAG ACGGGCCATCTGAAGGAAGGAAAGTAGACACTGTCTCTTGATGACACATACATTGAGTACAAATT ATAAAAAAAACCATAGTTTTTGGACAAGGCCATGTTGCATGATAATCGTTGAACTTTTGAATTTG GACGGGAATAAACCTTGATTGTTACAGTTTTTTCTTAAATTACCT Found at i:4626364 original size:11 final size:11 Alignment explanation
Indices: 4626346--4626370 Score: 36 Period size: 11 Copynumber: 2.3 Consensus size: 11 4626336 CGGGGTAGAT * 4626346 TAGTGGTAATG 1 TAGAGGTAATG * 4626357 TAGAGGTACTG 1 TAGAGGTAATG 4626368 TAG 1 TAG 4626371 GATTACTGTA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.28, C:0.04, G:0.36, T:0.32 Consensus pattern (11 bp): TAGAGGTAATG Left flanking sequence: Indices 4625846 -- 4626345 CCAGATTGATGATCCATCGAGTTTCCGTCGTTAAGCTCCATTTGTTTTGGTAAACATACCAATGT AAATTATTATAAGACATCTCCGGTTAGTTGGAGTGTTCGGCGTTTTTTGTGCCCCGAGATCTCCT CAGTCAATGTTCCTTATGCTTCCCTCTTGTTTTTTTATCACACACAATTTACGATGTCGTTGTTC GTTTTTTTCTAAACTTCGAAATTCCAATCATTTTAATAAATGTTTATCAAAAAACGTTTTTTTTT TAATTTTCCAGGGTTTTGAGTTCCATCAACCAACTAATGTCGATAGAAGCAAATTTTGCATAGTT TCATAAAATTCTGGAGGTACTGTAGAAGTGTAGGATTACTGTAGTTTTCGAAAAAAAAGGTTTTG TCGTTGGAAAGATATGGATCTGAGGTTAGTGAGGAGATATGGGCGGGTTACGGTGATTGTATCGT AGGATTACTGTAGTTTTTGGAAAAAAGAGCATGGTCGGGGTAGAT Right flanking sequence: Indices 4626371 -- 4626870 GATTACTGTAATTATTGAAAAAAGTAAACTTTTGACTTTTGAAGGGATATTAAGTTGTCGTTGAT GATGTTGACGCAGTACTGCACTAGTACTGTAGGCGTATTTAGGAGTTCTGTAAGATTACTGTAAT TAAAAAAGTTAACTTTTGTAGTAGTACTGTAAAAGGGACTGTAGTACGAGAATTGACTTAAACAG TGTGATATTTTTATTTTTTCGATAAACTTAACCAAAAATGTAGACCATCAGTCAGTATCACTTGT TCTTAGCATGGTTCAAAAAATAATTAGGACAACTCTACCAGTGCTCCTGATTTTCTAGGCCAGCT AAATGTCATTCCCAAAATACAAACATGAAAATCTGCATTTCTTGTCAAACTTCCCTACTCTCCCG CTTCCTCGCGCGGTTTTTGAGTCCTTCCGGACATTTTTCGACGAAACACACATGTAGTAGTGTCT AAACGATTATGAATTGTGTATTGTGTCGGCTCTCAGAGCCCATTT Found at i:4627843 original size:13 final size:13 Alignment explanation
Indices: 4627819--4627844 Score: 38 Period size: 13 Copynumber: 2.0 Consensus size: 13 4627809 AATTTATGTG * 4627819 AAAATAAGAAATT 1 AAAACAAGAAATT * 4627832 AAAACAATAAATT 1 AAAACAAGAAATT 4627845 TCGAGACGTC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 11 1.00 ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23 Consensus pattern (13 bp): AAAACAAGAAATT Left flanking sequence: Indices 4627319 -- 4627818 ATAGATCAGAGTGCTGGTGAGTCGCTACTCAGCGAAATTGCGATAATAAAGCTTTAGCCTTTTTG GAAAATTTCCAAATCAGGGATATACATGTCTGGTCTCGTAAAGATTTTGATGTTAATATAGGTTT TAAAATTTCAAAAATTTCAAATTGTTGATTCCAGGCACCAGAACAACCTCGTTGTTGGTCCCGGC AACTCGACCACCGTCCAAAATGAGTGCTACACATTTTTCGATCAAGCAACACCTCCAAAACGGTT CGCAATTTTTTCCATTTTTTTCAATTAATATAACTTTTCAGTTGGACATATTGCTTCTGCAACAG TAGCAACTACTGTAACACCGGTCATTCAACATTTCAAACTTTCAAACTATTTTCCTTGATTTTAA CAATGCTTTTCTGAATAAATTTTCAACTTGCGTCCAAATCTGGCGCAACGAGAATAAGATTAATG TATTTTTTGTTGAAAAAAATCGCAAAGAATGTGAAAATTTATGTG Right flanking sequence: Indices 4627845 -- 4628344 TCGAGACGTCGTCGTCTCCACAAGAAATCAAAAAATCAAGGGAAGCGAGAAGCAGGGGAGAAGCA CGTGACAAAGGAGCATCTTAAGCAGCTACACTAGGGAAAAATTTGTTCGTTTCAAAGTAAAAGTG TCTTCATTAATGCTGAAGATGGCCGTTGTCAGACTCTCTCCGGATTCTGGCTTCCCTTCCGTCTG AAAATTGAAAATCAAAGCAAGTCTTTAAAAAACTTTGATTCTATAAAAGCGAATGAGCTTAAAAT AACCCATTCACATAATAAGAGTACCCGAATTGAAAGAGCCAGAATGTGATAATGGAGAGATTGGC GGTGTGTTGATCATTTGTATTGCTGGAGTACGATCTCCTGTATATACATATTCAAGGTATCGTTC CTGAAGAATTGTCCGTTCACTAGACTGGGACAGAGACCGATGACGCTCGATGGTGTGCTGAAAAT TCTGGAATTTTTTGGATTAAAGATGGAGTACCGAAATCTGAAAAT Found at i:4629176 original size:13 final size:13 Alignment explanation
Indices: 4629158--4629191 Score: 47 Period size: 13 Copynumber: 2.6 Consensus size: 13 4629148 TATAAACAAA * 4629158 AAGGGAGAAAGAC 1 AAGGGACAAAGAC * 4629171 AAGGGACACAGAC 1 AAGGGACAAAGAC * 4629184 AATGGACA 1 AAGGGACA 4629192 TGGCAGGATT Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 13 18 1.00 ACGTcount: A:0.50, C:0.15, G:0.32, T:0.03 Consensus pattern (13 bp): AAGGGACAAAGAC Left flanking sequence: Indices 4628658 -- 4629157 GCTTTGCCAACTTCTGAACCGAGTTAGTTTTTTTTGGGTAGTTTTCAGCTTGAAGCATTTTTATG AAAGCCAACTTATTGATTGTTATACTTGCAAACATGCAATATCAACCGCCACCTTTGAAAATTAT CCGTTCGCATTTTATTGTGTGTGTTAGGATTGTATAACATGGACAAGAAAAAACTAAAAAGCATT TATGTTTTTTTTGTTGCAAAAGACACATTATTGAAACAAATGGAAAGAGATATATTAAATGGTAC ATCTATTACTACGAATTAGTTTTAAAGAAATGTAAAAAAAATGCGAAACCTAGTTAAACAGGAAA ACACATAAGAATTGAAGATTTCAGTGGAAAAAGGACAGGGTTCAATAGGGAATGACAACCGGGGG AGATGGATGAGATCTAAATGACTAGGAAATTATGGACTAGATATGGTTTTAAATAATATTATTAT TAGTATTAAAGCTAAAATAAAATTAGTTGGCAATGTATAAACAAA Right flanking sequence: Indices 4629192 -- 4629691 TGGCAGGATTACGGTAGTTAAGGGTTACTGTAGGAAGAAAATTTTAAAATTAAAACAATAAGCTG AAATGAAACTAAATAAGTGAAATTGAATCATGCCTTTGAACTTTTTTTGCAGTTAAAAAAAATTA AAAAATTTTAGAATTGGAATAAAAACTTCAAATTCGTTTTGAAATTATTTTACTGGAGCTAGTTC TGAATTTTGAACTAGACAATCAATGGTTTTTTCTCATACCCTAAAGGCAGATGTGTGCTGAACGC CCCGTCGGCTAACGGTGGGACCAGTCGCCACAACTCCCTTTGTACGCTTTCGGCGTTCGGCTTCG AGTTGCTCGCGGAGCAACTGGATTTGGGATTCTAAGAGTTTTCGCTTGTGAGAGTAGTTGGCGTC TTTTTGGTCAAGCATTGATTGGAGCTGCAAAAACCTAGAATGTAGATTAGCCTATGAATTTCTTG AAAATTATCAAATTTCATAAAAATTTTCACCAGCCGAAAATTTAT Found at i:4629662 original size:19 final size:19 Alignment explanation
Indices: 4629638--4629675 Score: 55 Period size: 19 Copynumber: 2.0 Consensus size: 19 4629628 TTAGCCTATG * * 4629638 AATTTCTTGAAAATTATCA 1 AATTTCATAAAAATTATCA * 4629657 AATTTCATAAAAATTTTCA 1 AATTTCATAAAAATTATCA 4629676 CCAGCCGAAA Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 19 16 1.00 ACGTcount: A:0.45, C:0.11, G:0.03, T:0.42 Consensus pattern (19 bp): AATTTCATAAAAATTATCA Left flanking sequence: Indices 4629138 -- 4629637 GTTGGCAATGTATAAACAAAAAGGGAGAAAGACAAGGGACACAGACAATGGACATGGCAGGATTA CGGTAGTTAAGGGTTACTGTAGGAAGAAAATTTTAAAATTAAAACAATAAGCTGAAATGAAACTA AATAAGTGAAATTGAATCATGCCTTTGAACTTTTTTTGCAGTTAAAAAAAATTAAAAAATTTTAG AATTGGAATAAAAACTTCAAATTCGTTTTGAAATTATTTTACTGGAGCTAGTTCTGAATTTTGAA CTAGACAATCAATGGTTTTTTCTCATACCCTAAAGGCAGATGTGTGCTGAACGCCCCGTCGGCTA ACGGTGGGACCAGTCGCCACAACTCCCTTTGTACGCTTTCGGCGTTCGGCTTCGAGTTGCTCGCG GAGCAACTGGATTTGGGATTCTAAGAGTTTTCGCTTGTGAGAGTAGTTGGCGTCTTTTTGGTCAA GCATTGATTGGAGCTGCAAAAACCTAGAATGTAGATTAGCCTATG Right flanking sequence: Indices 4629676 -- 4630175 CCAGCCGAAAATTTATCAGTCGGCTGTCGGCTGGCGCTACCAGCCGAAAAACCTTAATTTTACAG CCGCACATCCCTGCTCAGTACCACCTAATTTTGTTTCACAAACCTGACGTTTTTCTTCAATTAAA GCTGCAATTCGAGCTTCGAGCAATGAATGCTCCTTAGCCAACTTGGTTACCGACCGATTTCCGGC GTCGCGCTCCAGATTCTGAATTTGAGCTTGAAGTTGAGCACAATTCCTATACAACTGTTGATTTT CTCGTTCCATTGACGCGAGAGATTTGTCGATGGCACGACGTTCGTTCATGGTTTCTCGAACGGCC TTTTCAGTTTTTCCCTTCTCTTCTTCTAGCTGAAAAAAATATTTCGAAATTGAAACTGTTTTATT CACACAAACAACAATAAAACTAACCGCATCAACATGTCTCTTAAGTGCACTGATTTCCCTTTCCA ACCTTACTCGAATACCCTCGATCTCCTTCTTTTCAGTGTCACTTC Found at i:4632355 original size:12 final size:12 Alignment explanation
Indices: 4632332--4632366 Score: 35 Period size: 12 Copynumber: 2.9 Consensus size: 12 4632322 TTGGATCTTC * 4632332 TTCCTCTCCTCA 1 TTCCACTCCTCA * 4632344 TTCCACTTCTCA 1 TTCCACTCCTCA * * * 4632356 CTCAACCCCTC 1 TTCCACTCCTC 4632367 TTTTCCATTT Statistics Matches: 17, Mismatches: 6, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 12 17 1.00 ACGTcount: A:0.14, C:0.51, G:0.00, T:0.34 Consensus pattern (12 bp): TTCCACTCCTCA Left flanking sequence: Indices 4631832 -- 4632331 CTTCTAAGCCTCTGATTATCCAATTCACCCTTATTGGCCTTCTCCTCAGCACTCCGGTACTTATC CAAAATGTCACTGATTGCAGATTTGCTCGTTTCTCTCTTGACTTCAAATGCAGCTTTCACTGTTG CCAGATCATTTACAAGCCGTTGATTCTCATCTTGAAGAGCTTTTCGAACTTTTTCAAGATCAGTT AGCTGCAAATTACGAATATTTTTAAGCTAAAAACTCAAATAAAACTCACTCTAAACTGCTCATTC TGTGCTTGCTTCAGCATACTCTGAGCATCATGCTCCATCTTTCTGAGCAAATCTCCTGAAACCTC GTTCTTCGCAGCTTTATCCATCAACTGAATCTCTAATTGTCGAACTTTATTGGTCAAATCAGTCA CATTCTGATCCAATTCATTCTTCTTTTCTTCTAGATTAACATTCTTCATTCTCATATTATGAACA ACTTTGTTAGCCTCTCTCAATTGATCTGCCAAGTCTTGGATCTTC Right flanking sequence: Indices 4632367 -- 4632866 TTTTCCATTTTTGAGTTCCGAGTTTTGTTTCAGCATGACTGCAAGCTCGTCTTTCAGCTTTTCAA GTTCTGCTTCAGTAGTTTCCAGCTTGGATATCAGCTCCATTGTATTCGATTCCAAAGCATTAATC GAACTTTCTCTCTCCGCAATTCCAGCCGTCAGCTTTTCCACGTCACCCTCCAACACTGAAATTCT TCGAGTCTGTTGATCAATCGTTGTTGCATGTTTTGTAGCAACAAGCATTGCTTCTTCTTTCTGTT CCATGAGTTTCATCCTCTCTTCATTCAATGTCTTCTGTTCCTTCTTCCGATCTTCCTCTTTCTCC TCATCTGTCAACTCCATTTTTCGAAGCTTGTCATCAAGATCTCTTGATTTCTCATGGCTGTCTTC TAAATCCCTACGAAGAGCAATTTCCTTATCTTCTTTCTCCTTCACCACATCCTCAAGCTTCTGCA CTCGTTCTTGAAGTTCCGTAACTGCTTCGTTTTTGGATGATTCCA Found at i:4638500 original size:11 final size:12 Alignment explanation
Indices: 4638477--4638501 Score: 36 Period size: 12 Copynumber: 2.2 Consensus size: 12 4638467 AATTTATGGG 4638477 AAAGTTTGTAGA 1 AAAGTTTGTAGA * 4638489 AAATTTTG-AGA 1 AAAGTTTGTAGA 4638500 AA 1 AA 4638502 TCTGAAGAAT Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 11 5 0.42 12 7 0.58 ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32 Consensus pattern (12 bp): AAAGTTTGTAGA Left flanking sequence: Indices 4637977 -- 4638476 CTTCCAATAACAAAAGTGAAAGTGATCGGATGAGAGAATCAACTAGTGTACTTACTCTTTTTGTT AAAATAAAAACAGAAACAGGAAACAATTGGGTTTCAGTTTAAAAACTACGAGAATTGAAACAAGG TTTCAGAGAACAATTGTGTTACTGTAACTTTACAAATTCAATGGATCTCAGGTTTTTTTGAAGAC GATGAAATTATTCTCCGAAGCTTACCTGATCATTAATATCCTGGATAACCTGCCGATTCCTCCGA TTCTCCTCAATCCCAGCATCCAACCGATTTCGGCATTCGGATAGATCTTCAGTGACACGAACGAC ATCCTCCGAACTTGCCGCCGATTTCATTTTTTTGCTTTGCCGTTTTGGGAGCTCACCGAGTTGGC ATACTGAAAGAAAATATTGGTAGGTGGGAAGAAAGGTGGAGTCGGAGAAAAGGATGCACGCGATA TGTGTGTGACATGAAAATTAGATAGGTTTGGCGAGAATTTATGGG Right flanking sequence: Indices 4638502 -- 4639001 TCTGAAGAATATTTATGAAGCATTTTTGAAAAAGTAGAGATTTTGCTATTTTGCAAAAGTTGAAT CTTTATAGGTGGACTAGAGGGAAGACTTAATTGAGAAAGAATAAAAATTCCTATATTTTTTAAAA GTGTGTTTTTTTTTGTTCAATTTTGTAGTCTCCCTGTTTCTATTTCCTCTAAAATTAGGTCGTCG CCTTCGATTTCCGGCATCTGATTGGCTGATAAATGAACGGAAAAAATCACTGATTGGTCGCACGT TTTGTAAAAATTCCAAAAAAAGAATTTGGCCAAATTTGAGTTTTTCTCTGCCAGCTAGTATCTCA GAAACAAAAAAATATTTTGTTGATTTAAATTTTTTTGGAAAAACTAAAAACAACAGCGGGACATA ATTTTAGAGACGAATTCAAATTTATTAAACTCAATGACAAAATGAAGAAGAAGCTTCCATATTTT ACTCCTAAAAAAAATAAATAGATCCTAGAAATAGTGAGACGCAGA Found at i:4639931 original size:11 final size:12 Alignment explanation
Indices: 4639915--4639940 Score: 38 Period size: 11 Copynumber: 2.2 Consensus size: 12 4639905 CATAAATTCG 4639915 AAAAAAGTTT-C 1 AAAAAAGTTTAC * 4639926 AAAAAATTTTAC 1 AAAAAAGTTTAC 4639938 AAA 1 AAA 4639941 TTTCACATGA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 11 9 0.69 12 4 0.31 ACGTcount: A:0.62, C:0.08, G:0.04, T:0.27 Consensus pattern (12 bp): AAAAAAGTTTAC Left flanking sequence: Indices 4639415 -- 4639914 ACAAATGGCATTTCACATACGTGAACTAAATCGCAGATGTTTGACATGACGAGTCATGACAATGG AAACGAAATTGCGGGCGGAGAATGCAAAAAAAATCGAAGGACATTTTAGAAAAAGCTCGGGTGCC GCTGAAGCTTCTGTGGAAGGCAATCGGAAGTGTCTCCCCGTATGGACTATTACCGTAGAGTAAGG GTACGAAATGACTACTACGACTATAAAGGACGTTTATGTTTACAGCCACACCCCGGAGATTTTTT TTTTTGAAAAAAAAAAAAGATTCAGAAAATTGGTAGCCGTTTTGCAGTCGTTTAGTTGGAATAAA AAAGGAAGTGAGAAGAAAAATGGGAAAGGTAAAAGGTTGGAAGAAGTGGTGGGAAATTAGATTAA GAATTTGGGATTATTGGGGAACACTAGGGGTTTTCAAAAAACCTTACCTTATAAGTTGGGGGCAA AAATAATTGTTTTTTTTTTCAAAAAAAGAATCGAACATAAATTCG Right flanking sequence: Indices 4639941 -- 4640440 TTTCACATGAAGTTGCGAAATGAAAAAATATGTAATATTACGAATAAAATATGCATGTGTAGATT TTCTATTTTTTTAAATTTTCAGTCATAGTTTTTTTTCTAAATGGCCAAATTTTCATGAAAATTTG GACTTTTTAAGTGATTGCAATTTTTGAATGTAACGTAATAAAAATTTTCAAAAAGTTTTTGGAAA ATTTTCAAACATACCTTTCTGTTTAAAAAAGACATGAAAACATTAAGCACAAACGTAAAAAGGCT AAAGAATAAATAATGACTCCAAAAAAGGGTCTTATTTCAATTTGCAAATAGCTTCACATAAAACT TCCATTAGTAGCTAGGAGCATGGTGGCTTGCAGAAAAAACGTATCCAATTCTCCCCCTGAGTTGT CATGGAAACTTTGTCTAGTGTAGTATATCAATTTTTTCACTAAATAATACATTTAAAATTTGAAA GAATTTAGAATTTTTTGAAAACAAAAAAAGAGTTTTGATTCAGAA Found at i:4641111 original size:11 final size:11 Alignment explanation
Indices: 4641091--4641112 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 4641081 ACATTTAAAT * 4641091 TTAGAGGGAAA 1 TTAGAAGGAAA 4641102 TTAGAAGGAAA 1 TTAGAAGGAAA 4641113 CGAAAATGAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18 Consensus pattern (11 bp): TTAGAAGGAAA Left flanking sequence: Indices 4640591 -- 4641090 TAGATTAACATTCAAACATTTTGAAAATGCTCAAAATGTTTTAAGAACTATTAAAAAAATCTAGA TGTACATAATTCTGGGAATTTTTTAAATAAATATTATGAGCAAAATAATTCTGAAAATACAGAAT AACCAACAAACTTAATTCCATATTTTCCAAAAATATTTGGGTTTGGAATGAAAAGATTTTCATTA AAACTGACCACTTCAATGTCTCATTTCTCTTGCTCTCTTTCTCTCTCTACGCCTGCTCTTCACTT TTTCACTATCTGCGTCTCTTGATTCTTACCACTCTCTCGCTGTGTTCATTGCATATAAGGTTCTA GAAAGGGGGTGCTGGTGGCAAGGAATCAGAGAAAAAGAGAGAAATGAGCAGATGGTCAACTCCCT GATTCTGTATTCTGGATGTTATTATGATGGATTCTCAAGGTCCACCGGTTCGGGATTAGGTAACT GAGTTGCTATGGAAACTCATCGGAGTGGAAGAAGCACATTTAAAT Right flanking sequence: Indices 4641113 -- 4641612 CGAAAATGAAGACACATTTTGGAAATGAGCTTTGTGAAGAGTTTATGAGCATTCTGTGATGGCCA TTGGCAAACCAATTCTTAGGTTTAAAAAAATTTTAAAACCGAGATTCACGGACAATATGGAAATT CAAAACTTCACTGGTTTTCAAAATTTTTTAAACCGAGATTTATGGACAATATGGACAATTAAAAC TTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTG GTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTCA AAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTT TAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAAC CGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC Found at i:4641365 original size:58 final size:59 Alignment explanation
Indices: 4641203--4642386 Score: 2117 Period size: 59 Copynumber: 20.2 Consensus size: 59 4641193 TTAGGTTTAA * * * 4641203 AAAAATTTTAAAACCGAGATTCACGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * 4641262 AAAATTTTTTAAACCGAGATTTATGGACAATATGGACAATT-AAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGA-AATTCAAAACTTCACTGGTTTTC 4641321 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * 4641379 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * * * 4641437 AAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4641496 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4641554 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * * * 4641613 AAAATTTTTTAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCGCAGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4641672 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * 4641731 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * 4641790 AAAATTTTTGAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4641849 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4641907 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * * 4641965 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * * 4642023 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4642081 AAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4642139 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC * * * 4642198 AAAATTTTTTAAACCGAGATTTATGGACAATATGGAAAATTCAAAACTTCGCAGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGG-AAATTCAAAACTTCACTGGTTTTC * * 4642258 AAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTCAAAACTTCACTGGATTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGG-AAATTCAAAACTTCACTGGTTTTC * 4642318 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTC 1 AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC 4642377 AAAATTTTTA 1 AAAATTTTTA 4642387 TATGGACAAT Statistics Matches: 1082, Mismatches: 37, Indels: 12 0.96 0.03 0.01 Matches are distributed among these distances: 57 4 0.00 58 449 0.41 59 513 0.47 60 116 0.11 ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33 Consensus pattern (59 bp): AAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC Left flanking sequence: Indices 4640703 -- 4641202 ATTCTGAAAATACAGAATAACCAACAAACTTAATTCCATATTTTCCAAAAATATTTGGGTTTGGA ATGAAAAGATTTTCATTAAAACTGACCACTTCAATGTCTCATTTCTCTTGCTCTCTTTCTCTCTC TACGCCTGCTCTTCACTTTTTCACTATCTGCGTCTCTTGATTCTTACCACTCTCTCGCTGTGTTC ATTGCATATAAGGTTCTAGAAAGGGGGTGCTGGTGGCAAGGAATCAGAGAAAAAGAGAGAAATGA GCAGATGGTCAACTCCCTGATTCTGTATTCTGGATGTTATTATGATGGATTCTCAAGGTCCACCG GTTCGGGATTAGGTAACTGAGTTGCTATGGAAACTCATCGGAGTGGAAGAAGCACATTTAAATTT AGAGGGAAATTAGAAGGAAACGAAAATGAAGACACATTTTGGAAATGAGCTTTGTGAAGAGTTTA TGAGCATTCTGTGATGGCCATTGGCAAACCAATTCTTAGGTTTAA Right flanking sequence: Indices 4642387 -- 4642886 TATGGACAATTAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTAATGGACAATATGGA AATTCAAAACTTCACTGGTTTTCAAAATTTTTTAAACCGAGATTTATGGACAATATGGAAAATTA AAACTTCACAGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTC ACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACATCACTGGT TTTCAAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAA AATTTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTT TGAAACCGAGATTTATGGACAATATGGAAAATTCAAAACTTCACAGGTTTTCAAAATTTTTGAAA CCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTT Found at i:4642392 original size:39 final size:39 Alignment explanation
Indices: 4642347--4642425 Score: 135 Period size: 39 Copynumber: 2.0 Consensus size: 39 4642337 TTTATGGACA 4642347 ATATGGA-AATTCAAAACTTCACAGGTTTTCAAAATTTTT 1 ATATGGACAATT-AAAACTTCACAGGTTTTCAAAATTTTT * 4642386 ATATGGACAATTAAAACTTCACTGGTTTTCAAAATTTTT 1 ATATGGACAATTAAAACTTCACAGGTTTTCAAAATTTTT 4642425 A 1 A 4642426 AAACCGAGAT Statistics Matches: 38, Mismatches: 1, Indels: 2 0.93 0.02 0.05 Matches are distributed among these distances: 39 34 0.89 40 4 0.11 ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39 Consensus pattern (39 bp): ATATGGACAATTAAAACTTCACAGGTTTTCAAAATTTTT Left flanking sequence: Indices 4641847 -- 4642346 TCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAAT TTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAA CCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGAT TTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGA CAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATAT GGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTTAAACCGAGATTTATGGACAATATGGAAAA TTCAAAACTTCGCAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTCAA AACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTTATGGACA Right flanking sequence: Indices 4642426 -- 4642925 AAACCGAGATTAATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTTAAACCG AGATTTATGGACAATATGGAAAATTAAAACTTCACAGGTTTTCAAAATTTTAAAACCGAGATTTA TGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA ATATGGAAATTCAAAACATCACTGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACAATATGG AAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTC AAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTCAAAAC TTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACT GGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAT Found at i:4642472 original size:98 final size:99 Alignment explanation
Indices: 4642287--4642483 Score: 359 Period size: 98 Copynumber: 2.0 Consensus size: 99 4642277 TTTATGGACA * 4642287 ATATGGAAAATTCAAAACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTTATGGACAATATG 1 ATATGGAAAATTCAAAACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTAATGGACAATATG 4642352 GAAATTCAAAACTTCACAGGTTTTCAAAATTTTT 66 GAAATTCAAAACTTCACAGGTTTTCAAAATTTTT * * 4642386 ATATGGACAATT-AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTAATGGACAATATG 1 ATATGGAAAATTCAAAACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTAATGGACAATATG * 4642450 GAAATTCAAAACTTCACTGGTTTTCAAAATTTTT 66 GAAATTCAAAACTTCACAGGTTTTCAAAATTTTT 4642484 TAAACCGAGA Statistics Matches: 94, Mismatches: 4, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 98 83 0.88 99 11 0.12 ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35 Consensus pattern (99 bp): ATATGGAAAATTCAAAACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTAATGGACAATATG GAAATTCAAAACTTCACAGGTTTTCAAAATTTTT Left flanking sequence: Indices 4641787 -- 4642286 TTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAA ATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAA AACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAG ATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATG GACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATA TGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAA TTCAAAACTTCACTGGTTTTCAAAATTTTTTAAACCGAGATTTATGGACAATATGGAAAATTCAA AACTTCGCAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACA Right flanking sequence: Indices 4642484 -- 4642983 TAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACAGGTTTTCAAAATTTTAAAACCG AGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTT ATGGACAATATGGAAATTCAAAACATCACTGGTTTTCAAAAATTTTAAAACCGAGATTTATGGAC AATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATG GAAATTCAAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAAT TCAAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAAATTAAAA CTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACA GGTTTTCAAAAATTTTAAAACCGAGATTTATGGACAATATGGAAA Found at i:4642578 original size:58 final size:58 Alignment explanation
Indices: 4642386--4643793 Score: 2420 Period size: 59 Copynumber: 24.0 Consensus size: 58 4642376 CAAAATTTTT * 4642386 ATATGGACAATT-AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTAATGGACA 1 ATATGGA-AATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * 4642445 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTTAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * * * 4642504 ATATGGAAAATTAAAACTTCACAGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 4642562 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * 4642621 ATATGGAAATTCAAAACATCACTGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTC-AAAATTTTAAAACCGAGATTTATGGACA 4642680 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * * 4642739 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * * 4642798 ATATGGAAAATTCAAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACA 1 ATATGG-AAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * * 4642858 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * 4642916 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTC-AAAATTTTAAAACCGAGATTTATGGACA * * * 4642975 ATATGGAAAATTAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTC-AAAATTTTAAAACCGAGATTTATGGACA * 4643034 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA 4643093 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * 4643151 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * 4643210 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA * * 4643269 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * 4643327 ATATGGAAATTCAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTC-AAAATTTTAAAACCGAGATTTATGGACA * * * 4643386 ATATGGAAAATTAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTC-AAAATTTTAAAACCGAGATTTATGGACA * * 4643445 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * * 4643503 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * * * 4643561 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTCTGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 4643619 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * 4643677 ATATGGAAATTTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA * * 4643735 ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 1 ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA 4643793 A 1 A 4643794 AAACTTCACA Statistics Matches: 1299, Mismatches: 41, Indels: 19 0.96 0.03 0.01 Matches are distributed among these distances: 58 537 0.41 59 699 0.54 60 63 0.05 ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32 Consensus pattern (58 bp): ATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA Left flanking sequence: Indices 4641886 -- 4642385 TTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAA CTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACT GGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTC AAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTT TTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTTAAA CCGAGATTTATGGACAATATGGAAAATTCAAAACTTCGCAGGTTTTCAAAATTTTTGAAACCGAG ATTTATGGACAATATGGAAAATTCAAAACTTCACTGGATTTCAAAATTTTTAAAACCGAGATTTA TGGACAATATGGAAATTCAAAACTTCACAGGTTTTCAAAATTTTT Right flanking sequence: Indices 4643794 -- 4644293 AAACTTCACAGGTTTTCAAAATTTTTAAACCCGAGATTTATGGACAATATGGAAACTCAAAACTT CACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGG TTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCA AAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTTACTGGTTTTCAAAATTT TAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTTAAAAC CGAGATTTATAGATAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGAT TTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGG ACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTGAA Found at i:4643808 original size:46 final size:47 Alignment explanation
Indices: 4643747--4643840 Score: 167 Period size: 47 Copynumber: 2.0 Consensus size: 47 4643737 ATGGAAAATT * 4643747 AAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACA 1 AAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA * 4643793 AAAACTTCACAGGTTTTCAAAATTTTTAAACCCGAGATTTATGGACA 1 AAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA 4643840 A 1 A 4643841 TATGGAAACT Statistics Matches: 45, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 46 21 0.47 47 24 0.53 ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32 Consensus pattern (47 bp): AAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACA Left flanking sequence: Indices 4643247 -- 4643746 TTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAAC CGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGAT TTATGGACAATATGGAAAATTAAAACTTCACAGGTTTTCAAAAATTTTAAAACCGAGATTTATGG ACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATAT GGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAAT TAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTCTGGACAATATGGAAATTCAAAACT TCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTTAAAACTTCACTGG TTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATT Right flanking sequence: Indices 4643841 -- 4644340 TATGGAAACTCAAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGA AATTCAAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTA AAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTT TACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGT TTTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATTAAAACTTCACTGGTTTTCAA AATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTT TAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTTGAAAC CGAGATTTATGGACAATATGGAAATTCAAAACTTCACTGGTTTTC Found at i:4643874 original size:59 final size:59 Alignment explanation
Indices: 4643793--4645000 Score: 2185 Period size: 59 Copynumber: 20.6 Consensus size: 59 4643783 TTTATGGACA * * * * 4643793 AAAACTTCACAGGTTTTCAAAATTTTTAAACCCGAGATTTATGGACAATATGGAAACTC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * * * 4643852 AAAACTTCACAGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAATTC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4643911 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4643970 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * 4644029 AAAACTTTACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644087 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4644146 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644205 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * * 4644264 AAAACTTCACTGGTTTTCAAAATTTTTGAAACCGAGATTTATGGACAATATGGAAATTC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644323 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAATTC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * 4644382 AAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * 4644441 AAAACTTCACAGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4644500 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * 4644559 AAAACTTTACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4644617 AAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * 4644675 AAAACTTCACTGGTTTTCAAAA-TTTTATAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644733 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4644792 AAAACTTCACTGGTTTTCAAAA-TTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644850 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 4644909 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT * * 4644968 AAAACTTCACTGGTTTTAAAAATTTTTTAAACC 1 AAAACTTCACTGGTTTTCAAAATTTTTAAAACC 4645001 AGTGAAGTTT Statistics Matches: 1111, Mismatches: 35, Indels: 6 0.96 0.03 0.01 Matches are distributed among these distances: 58 285 0.26 59 826 0.74 ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34 Consensus pattern (59 bp): AAAACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATGGACAATATGGAAAATT Left flanking sequence: Indices 4643293 -- 4643792 GTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAATTCAAAACTTCACAGGTTTTCA AAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACAGGTTTTCAAAAATT TTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAAC CGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATT TATGGACAATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTCTGGAC AATATGGAAATTCAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGG AAATTTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTA AAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA Right flanking sequence: Indices 4645001 -- 4645500 AGTGAAGTTTTGAATTTCCATTTTGTCCATAAAAAAAAATGTAACAATCTATTTTTCGTGTAACA ATCTATTTTTTCGTGTAACAATCTATTTTTCGTGTAACAGTCAACCGAAAATGTGTATAATTTGA TATAACTCATCCTCCCTGGCTCAATCGGTTTTACACATTTTTGTAGTTGGTCATTTTAAGAAATC TTTGATAACAACAGAGTTATCGCCCCTTCTAGAGAAAAATCTAAAATTTTGATAATTTTATGAAA AAAATTCAATTGAAAACATACGAAAAAATATTTTCTATGGAATAAAATTAAAATGCTTGTATTAT GAAAACATCTTAAAAATCAAAAACAAAACACACAATTTCGTCACAAGGTATCCATTCTTCCACAA ATTTCGTTCACTTTTCCACCAAATTATCAAAATTTTAGATTTTTCTCTAAAAGGGGCGATAACTC TGTTGTTATCAAAGATATGTTAAAATTACCAACTACAAAAATGTG Found at i:4645077 original size:20 final size:19 Alignment explanation
Indices: 4645040--4645104 Score: 121 Period size: 19 Copynumber: 3.4 Consensus size: 19 4645030 TAAAAAAAAA 4645040 TGTAACAATCTATTTTTCG 1 TGTAACAATCTATTTTTCG 4645059 TGTAACAATCTATTTTTTCG 1 TGTAACAATCTA-TTTTTCG 4645079 TGTAACAATCTATTTTTCG 1 TGTAACAATCTATTTTTCG 4645098 TGTAACA 1 TGTAACA 4645105 GTCAACCGAA Statistics Matches: 45, Mismatches: 0, Indels: 2 0.96 0.00 0.04 Matches are distributed among these distances: 19 26 0.58 20 19 0.42 ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46 Consensus pattern (19 bp): TGTAACAATCTATTTTTCG Left flanking sequence: Indices 4644540 -- 4645039 ATGGACAATATGGAAAATTAAAACTTTACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACA ATATGGAAAATTAAAACTTCACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGA AAATTAAAACTTCACTGGTTTTCAAAATTTTATAACCGAGATTTATGGACAATATGGAAAATTAA AACTTCACTGGTTTTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATTAAAACTTC ACTGGTTTTCAAAATTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTT TTCAAAATTTTTAAAACCGAGATTTATAGATAATATGGAAAATTAAAACTTCACTGGTTTTCAAA ATTTTTAAAACCGAGATTTATGGACAATATGGAAAATTAAAACTTCACTGGTTTTAAAAATTTTT TAAACCAGTGAAGTTTTGAATTTCCATTTTGTCCATAAAAAAAAA Right flanking sequence: Indices 4645105 -- 4645604 GTCAACCGAAAATGTGTATAATTTGATATAACTCATCCTCCCTGGCTCAATCGGTTTTACACATT TTTGTAGTTGGTCATTTTAAGAAATCTTTGATAACAACAGAGTTATCGCCCCTTCTAGAGAAAAA TCTAAAATTTTGATAATTTTATGAAAAAAATTCAATTGAAAACATACGAAAAAATATTTTCTATG GAATAAAATTAAAATGCTTGTATTATGAAAACATCTTAAAAATCAAAAACAAAACACACAATTTC GTCACAAGGTATCCATTCTTCCACAAATTTCGTTCACTTTTCCACCAAATTATCAAAATTTTAGA TTTTTCTCTAAAAGGGGCGATAACTCTGTTGTTATCAAAGATATGTTAAAATTACCAACTACAAA AATGTGTAGAAATAATTGGTTAATATTTTTGTAGTTATAAACTTTTTGATACATTTGCAAGAAAT CGAGATATTCAGACAAACGTCCTATTTTCAGAACACTGAAAAGTT Found at i:4650414 original size:13 final size:13 Alignment explanation
Indices: 4650398--4650439 Score: 61 Period size: 13 Copynumber: 3.2 Consensus size: 13 4650388 TTTATTTCAT 4650398 AGTTAA-AGTTAA 1 AGTTAATAGTTAA * 4650410 TAGTTAATAGTTAT 1 -AGTTAATAGTTAA 4650424 AGTTAATAGTTAA 1 AGTTAATAGTTAA 4650437 AGT 1 AGT 4650440 ACATTCGTTA Statistics Matches: 26, Mismatches: 2, Indels: 2 0.87 0.07 0.07 Matches are distributed among these distances: 13 21 0.81 14 5 0.19 ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40 Consensus pattern (13 bp): AGTTAATAGTTAA Left flanking sequence: Indices 4649898 -- 4650397 AGTCCTAAATCCTATTCAATATCCATAATTGGGCATAATCTGTCGTCCGTGTCCTTATTTATAGG GTAACGAGGTTACCATCCGAAATGTAACACTTTGACCCCCTTTTACAACAAAAAGGGGGGATTCG ATTCTTTCTCCTCTCAATATAAGGGCGATTGCAATTGAACCGCAAAACAAACATTATCAGGAGGC AGAAGCCGAGAGAGGAAATTGAGATGTGGGAGTTGACAGAGGGTTCATTTGTTGAACACCTGTTC CGTCAGACTATTTATTTGACCTTCACGAAACGGAGAAGAAATAAATACTACGCACTTTGAAACGA TAATTGACCATTAACACTTTTTTTTAGAAAAAAAAACACTAAAAATTAGCACTGGTCGGGTATTC AAGGCAGGAAAACATCTGCATCAGAGGAGGTTAAATTAGAGTTTTTGTAGATTGCCTACCTACCT ACCTCGTTGCTGACTGTACCTAAGTGCGTTGAGTTTTTATTTCAT Right flanking sequence: Indices 4650440 -- 4650939 ACATTCGTTAATGCTAAAATGCCAAAATAGTATAGTAAATCAGAGTAAAAAAATTATTTCTACAA ATTTTGTACAATGATTGCGTTTCAATTATTGGTATTCAAACATTCTATGTATTAGTTCAAATTTG CAGAAATGCTCGGAATTGCGCAAAAACCCCACATTTTTTGTACTATAATCAGACGTGAAACCTGC CTGACCTGTAATTTAACTGTAAAAAACCCTAAAATTTAATATAATTTGATGTACCGGGATTTCAA CTTGCCAGCAGAACAACTTCATTCACTATTCTATGTATATTTCCAATTTTCAGACATTGAAGACG TCGCGCATCACAAGTATCAAGTTCTTGAAGAATGTCTGTTCTACAAGCTAACCAGCGATGCGGAT CGTATGCAAGGTACTTTTTTTGAAAGAAGGATTATACGACTTTAGTCGTTCAGAAGAAGATCTGA ATGTTATACGGGAAAAGTAAAACAGACTGGTTTTAAATGGAAGGA Found at i:4650419 original size:20 final size:20 Alignment explanation
Indices: 4650396--4650436 Score: 75 Period size: 20 Copynumber: 2.0 Consensus size: 20 4650386 TTTTTATTTC 4650396 ATAGTTAAAGTTAATAGTTA 1 ATAGTTAAAGTTAATAGTTA * 4650416 ATAGTTATAGTTAATAGTTA 1 ATAGTTAAAGTTAATAGTTA 4650436 A 1 A 4650437 AGTACATTCG Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 20 1.00 ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41 Consensus pattern (20 bp): ATAGTTAAAGTTAATAGTTA Left flanking sequence: Indices 4649896 -- 4650395 AAAGTCCTAAATCCTATTCAATATCCATAATTGGGCATAATCTGTCGTCCGTGTCCTTATTTATA GGGTAACGAGGTTACCATCCGAAATGTAACACTTTGACCCCCTTTTACAACAAAAAGGGGGGATT CGATTCTTTCTCCTCTCAATATAAGGGCGATTGCAATTGAACCGCAAAACAAACATTATCAGGAG GCAGAAGCCGAGAGAGGAAATTGAGATGTGGGAGTTGACAGAGGGTTCATTTGTTGAACACCTGT TCCGTCAGACTATTTATTTGACCTTCACGAAACGGAGAAGAAATAAATACTACGCACTTTGAAAC GATAATTGACCATTAACACTTTTTTTTAGAAAAAAAAACACTAAAAATTAGCACTGGTCGGGTAT TCAAGGCAGGAAAACATCTGCATCAGAGGAGGTTAAATTAGAGTTTTTGTAGATTGCCTACCTAC CTACCTCGTTGCTGACTGTACCTAAGTGCGTTGAGTTTTTATTTC Right flanking sequence: Indices 4650437 -- 4650936 AGTACATTCGTTAATGCTAAAATGCCAAAATAGTATAGTAAATCAGAGTAAAAAAATTATTTCTA CAAATTTTGTACAATGATTGCGTTTCAATTATTGGTATTCAAACATTCTATGTATTAGTTCAAAT TTGCAGAAATGCTCGGAATTGCGCAAAAACCCCACATTTTTTGTACTATAATCAGACGTGAAACC TGCCTGACCTGTAATTTAACTGTAAAAAACCCTAAAATTTAATATAATTTGATGTACCGGGATTT CAACTTGCCAGCAGAACAACTTCATTCACTATTCTATGTATATTTCCAATTTTCAGACATTGAAG ACGTCGCGCATCACAAGTATCAAGTTCTTGAAGAATGTCTGTTCTACAAGCTAACCAGCGATGCG GATCGTATGCAAGGTACTTTTTTTGAAAGAAGGATTATACGACTTTAGTCGTTCAGAAGAAGATC TGAATGTTATACGGGAAAAGTAAAACAGACTGGTTTTAAATGGAA Found at i:4651363 original size:11 final size:11 Alignment explanation
Indices: 4651349--4651379 Score: 48 Period size: 11 Copynumber: 2.8 Consensus size: 11 4651339 TACAATAGTG 4651349 GTACGGTAGGA 1 GTACGGTAGGA * 4651360 GTACTGTAGGA 1 GTACGGTAGGA * 4651371 TTACGGTAG 1 GTACGGTAG 4651380 TTTCAGAAAA Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 17 1.00 ACGTcount: A:0.26, C:0.10, G:0.39, T:0.26 Consensus pattern (11 bp): GTACGGTAGGA Left flanking sequence: Indices 4650849 -- 4651348 TTGAAAGAAGGATTATACGACTTTAGTCGTTCAGAAGAAGATCTGAATGTTATACGGGAAAAGTA AAACAGACTGGTTTTAAATGGAAGGAGTAAATGTAGTTTGAAAATTGATTTTATAAAGAGTTGGA AATTAAAATTTGAAATAAGTATAACAGAAAAATTGAACAAACAGTTTTACAGACAAGAGCAATGC TCTGATGATGCTTCCACCCACCGTTGCAGCCGGTGAGACTCTTGAAGTTCAAGTACTTGATGGAT CCATCACGGAGATGTGGATGAATGAGGTGTTCAAGGAGATGAATATCAATGGATTCTTGAAACTG GTGAGCTTAAAGATTTTTTAAAATTATCATTTACTATATATAAAGCGCTTATTCCGTTTGTCCAT AGTTTTTAGTCTTTGTAGTCTTTGTAGTCTGCAAAGTTTTAGCTTCTGGAGGGATAGTGAGTTGG GTTAGTGTAGGGATATAGTCGGGGTACTGTAGTGGTACAATAGTG Right flanking sequence: Indices 4651380 -- 4651879 TTTCAGAAAAAATAGTTTTCAGCTCTAGAAGTCGGGGGCCGCGCCGGAGGTGCGGTTTACGGCTG GTTACAACATAAAATATTTAAATTTTTTCAGTCGTGGAAAGACCGTCGCCTTCGTTGGAATCCAG AAGAATGGAAGACCGAGGTGCTTCGATTGAAATCCATGGGAAGATTGTGGTCACCAGATATCAAC TCGGATAAGTAAGTCCCTAATGTGAGTAAAATGAGTATATATTTTGTGTTTTAGGCTCCAAACAG GATCCCAGTCCACAGATTTTGTCAACTACCATGATATTCAATCAAACTACAATGGAAATGTGACG GCAAGGCTTGAGTTCAGAATGAAGGCTCAATGTCAGATTGATTATACTGAATATCCAAATGTAAG TCTTATTTTGGAACATTTCGCCTAAAAATTTTGTTAACTTATTGAAAAAAAATGAGCAGCTTTTG AAAGTTTCTAAAATTTTTTCAAAATTTTTTAACTGAAAAAAAAAG Found at i:4651860 original size:11 final size:12 Alignment explanation
Indices: 4651839--4651864 Score: 45 Period size: 11 Copynumber: 2.2 Consensus size: 12 4651829 CTTTTGAAAG 4651839 TTTCTAAAATTT 1 TTTCTAAAATTT 4651851 TTTC-AAAATTT 1 TTTCTAAAATTT 4651862 TTT 1 TTT 4651865 AACTGAAAAA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 11 10 0.71 12 4 0.29 ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62 Consensus pattern (12 bp): TTTCTAAAATTT Left flanking sequence: Indices 4651339 -- 4651838 TACAATAGTGGTACGGTAGGAGTACTGTAGGATTACGGTAGTTTCAGAAAAAATAGTTTTCAGCT CTAGAAGTCGGGGGCCGCGCCGGAGGTGCGGTTTACGGCTGGTTACAACATAAAATATTTAAATT TTTTCAGTCGTGGAAAGACCGTCGCCTTCGTTGGAATCCAGAAGAATGGAAGACCGAGGTGCTTC GATTGAAATCCATGGGAAGATTGTGGTCACCAGATATCAACTCGGATAAGTAAGTCCCTAATGTG AGTAAAATGAGTATATATTTTGTGTTTTAGGCTCCAAACAGGATCCCAGTCCACAGATTTTGTCA ACTACCATGATATTCAATCAAACTACAATGGAAATGTGACGGCAAGGCTTGAGTTCAGAATGAAG GCTCAATGTCAGATTGATTATACTGAATATCCAAATGTAAGTCTTATTTTGGAACATTTCGCCTA AAAATTTTGTTAACTTATTGAAAAAAAATGAGCAGCTTTTGAAAG Right flanking sequence: Indices 4651865 -- 4652364 AACTGAAAAAAAAAGTTCCAGGACCGTAAACATTGCTGTTTCAACTTGCAATCAAACCTCTATAA AAGATATGTAAGATTCATAATGGAACACGAAGGAGCACATGAGATGTTGAATACGAAGAATACTA AAACTAATTGGCATATTGATCCAATGTACACTTGGATTTCAAAAATGAATCAGGAAAATGACAAT AGGTAATTTTGCATTTTAATTTAAAGAAATTTTTAAAAAAATCTATTAAAAATGTATTGAATTCT TTCAGAGCCGAACGTCTCGAAGTGTGTGTTGGAGTAGTCCGCAAGTCATCAACCCTTGCCGTTGA ACTCACTCTCCCGGTTCTCATTTCTGCATTGATTCTTTTGTTGGCTCCATTCTTTGGAAAGTTCA ACCAGCAAATTTATGTGAAAATGTTCGCTCTTTTGCTTCAATTCCTGAGCTTCCAATTCTTGGCA GAGAAGACTCCACAACTTGGATTTGGAGACAATATTCCGAAGATT Found at