TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:567277 original size:26 final size:26 Alignment explanation
Indices: 567233--567308 Score: 78 Period size: 26 Copynumber: 2.9 Consensus size: 26 567223 TTTATGCCAT * ** * 567233 TTTAGCAAATTTCGAAATTTGCCGAG 1 TTTGGCAAATTCGGCAATTTGCCGAG 567259 TTTGGCAAATTCGGCAATTTCGCCGAG 1 TTTGGCAAATTCGGCAATTT-GCCGAG * * 567286 CTCGGCAAA--CGGCAAATTTGCCG 1 TTTGGCAAATTCGGC-AATTTGCCG 567309 CACACCTCTG Statistics Matches: 42, Mismatches: 6, Indels: 5 0.79 0.11 0.09 Matches are distributed among these distances: 25 8 0.19 26 21 0.50 27 13 0.31 ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28 Consensus pattern (26 bp): TTTGGCAAATTCGGCAATTTGCCGAG Left flanking sequence: Indices 566733 -- 567232 AAATTGTGATCTACGCGTGATCTACGCAAATTTTACACAGAAACTTCTGAAAATGATGACTAAAC GAGCGACAAAATCAAGAAAAATTTCAAAAATTATTTTGATGAAGGCTTGAAAGGAGTAAAAAATT TACAAACTTTTTTCAAAACTAGAAAATAATATTTCAAAACAGTTACCAAAAATTCAGATAAATGT CAAATATTTGAGCACAATTGTTTACTCGATTCGATTTTTCACACTGCTGAAATTCTCACGTCAGA AGAAGCGATCGAATCTCGGAGTTCTAGTCAAAAGTGTGCGGCAAATCTCAAAATTTTCTGAGCAC GGCAAATTCGGCAAATTTGCCGTGCTTAACAAACACTGAAAAATGTGATACTTTTTGCCTGTTTT TTGAATCACCAAAACTACTGAATTCTGAATAAAAATCTGGTGTTAAAAATCTGGATAAGTTCCGT GTAGAGTGTCTGCTTAGGCATCAAAATAACTCAATTTTATGCCAT Right flanking sequence: Indices 567309 -- 567808 CACACCTCTGGTTCTAGCCATCTGTCAATCGGACTTGAAAATTAAGAAGCCGCGGGATTAAACAA GAAAAACTGATTATCGTGTGAGATCCTTCAACTGCAGGTCTTCGGATGATCGACTTGCTGAGCGA AGGGATCAGATTCGACATCATCGAATAGTGAGAAACCAAACGAGCAGCCGAAGTACACTTCATAC ATCAGGACGGTACCCGTGTCTTCTTAGGTAAACAGAATCACCGACTACAGTACTCCATTGCGCCT GACTTTGGGAATTTCAAGCTAAAAAACTACAGGTAGACTAATACGACAACGGTGAATTCAAATTT GAAAAGAAAAACTTGTGATAAAAAATTTCAAAACAAATTTTCAGGATTTTTTTTTATTTTTCAGA AAAAAACCGAAAAGAAGTGTTAAGGATTAGCCCACGGCGCGGATCCCTGACTCCGGATTCCTCCA TTACCCCATCCGACGGGTATCCCACCGATTCGACCATTACCACCC Found at i:569773 original size:12 final size:12 Alignment explanation
Indices: 569756--569787 Score: 41 Period size: 13 Copynumber: 2.6 Consensus size: 12 569746 ATAAAAATAA * 569756 TTTTTTGGAATT 1 TTTTTTGAAATT 569768 TTTTTTCGAAATT 1 TTTTTT-GAAATT * 569781 GTTTTTG 1 TTTTTTG 569788 CTGAAAAGTA Statistics Matches: 17, Mismatches: 2, Indels: 2 0.81 0.10 0.10 Matches are distributed among these distances: 12 7 0.41 13 10 0.59 ACGTcount: A:0.16, C:0.03, G:0.16, T:0.66 Consensus pattern (12 bp): TTTTTTGAAATT Left flanking sequence: Indices 569256 -- 569755 TTCACATTAAATTTTTCAAAAAAAAAATTCATTAAAATCAACATGAAAGCATTGAGAAAAATGGA CATGTCGTGGGGGCCGAAACAAAAATCAATCAATAAATTATGTTAAAAGGTAATATTAGGAAACT ACTAGACACAATTGCATATACCCACAGAGTGTAGATCGGAAATTTTGGAAATTGAAGTGGTTTTT TGGTTTTCGGAAAAATAATTTTCTCCGAGAAAAATTTCAAAATTTTAAACAATTTATTTTCCATT TCTGGAGCGAATATGTTCAGCTTGCGATGAAATTTCATTGATAAAGTTCTTGAATGCATTCGGGT CACGGAGGCACTTTTGGGACTTGTCCTGAAGGTGGTACTTGCATACATCCACCCACAAACGGGCA CATCCCAGCTTCTTGTCTTTTCCGTCAGTGAAGGAGAATGTTAGCCAGTATTCATTCTAAAAAAT GAAAGGGTTTGGAGGATTTTTTAAAGGAAAAATTAATAAAAATAA Right flanking sequence: Indices 569788 -- 570287 CTGAAAAGTACTGCAAATTTTCTGTAGACTAATTTACTACAAAGCTCCAAAATTCCTCTAGTTCC TCGAGTTTTTTTTGCAAATTGAAAAACACACGTGGTTTCAGGCTGTTCATAACGGTTTGATCTAC AAAAATGCGGGAATTTTTTGCCCAAAAAGTGTGACATCAACACGTTCTTAATCATGTCAAATCAG ATTGAAAATTCTGCGTCTCAACTCTCCCGCGCATTTTGTAGATCGACGTATATCAAACCGAAATG GGACTCTCTGACATCACATGAAAACACACCTTGTTGCACATTTGTAAAAAAAACATTAAAATTGA AAAAAATTCAAATTTCCCGCAGATCGCACTGAAAATAATTTTTAAAAACTATTGAAAATATTTTT TCACACAAAAATTCGAATTACCGTCCATCCGCAAGTGTGCTCCAGTCAAAAACTGCGGGAAATCA TTTTTCTGATAAATTTTGAGAACAATTTTTCAGGATAATAATTCT Found at i:569793 original size:15 final size:13 Alignment explanation
Indices: 569756--569793 Score: 37 Period size: 11 Copynumber: 2.9 Consensus size: 13 569746 ATAAAAATAA 569756 TTTTTTG-G-AAT 1 TTTTTTGCGAAAT * 569767 TTTTTTTCGAAAT 1 TTTTTTGCGAAAT 569780 TGTTTTTGCTGAAA 1 T-TTTTTGC-GAAA 569794 AGTACTGCAA Statistics Matches: 21, Mismatches: 2, Indels: 4 0.78 0.07 0.15 Matches are distributed among these distances: 11 6 0.29 12 1 0.05 13 4 0.19 14 6 0.29 15 4 0.19 ACGTcount: A:0.21, C:0.05, G:0.16, T:0.58 Consensus pattern (13 bp): TTTTTTGCGAAAT Left flanking sequence: Indices 569256 -- 569755 TTCACATTAAATTTTTCAAAAAAAAAATTCATTAAAATCAACATGAAAGCATTGAGAAAAATGGA CATGTCGTGGGGGCCGAAACAAAAATCAATCAATAAATTATGTTAAAAGGTAATATTAGGAAACT ACTAGACACAATTGCATATACCCACAGAGTGTAGATCGGAAATTTTGGAAATTGAAGTGGTTTTT TGGTTTTCGGAAAAATAATTTTCTCCGAGAAAAATTTCAAAATTTTAAACAATTTATTTTCCATT TCTGGAGCGAATATGTTCAGCTTGCGATGAAATTTCATTGATAAAGTTCTTGAATGCATTCGGGT CACGGAGGCACTTTTGGGACTTGTCCTGAAGGTGGTACTTGCATACATCCACCCACAAACGGGCA CATCCCAGCTTCTTGTCTTTTCCGTCAGTGAAGGAGAATGTTAGCCAGTATTCATTCTAAAAAAT GAAAGGGTTTGGAGGATTTTTTAAAGGAAAAATTAATAAAAATAA Right flanking sequence: Indices 569794 -- 570293 AGTACTGCAAATTTTCTGTAGACTAATTTACTACAAAGCTCCAAAATTCCTCTAGTTCCTCGAGT TTTTTTTGCAAATTGAAAAACACACGTGGTTTCAGGCTGTTCATAACGGTTTGATCTACAAAAAT GCGGGAATTTTTTGCCCAAAAAGTGTGACATCAACACGTTCTTAATCATGTCAAATCAGATTGAA AATTCTGCGTCTCAACTCTCCCGCGCATTTTGTAGATCGACGTATATCAAACCGAAATGGGACTC TCTGACATCACATGAAAACACACCTTGTTGCACATTTGTAAAAAAAACATTAAAATTGAAAAAAA TTCAAATTTCCCGCAGATCGCACTGAAAATAATTTTTAAAAACTATTGAAAATATTTTTTCACAC AAAAATTCGAATTACCGTCCATCCGCAAGTGTGCTCCAGTCAAAAACTGCGGGAAATCATTTTTC TGATAAATTTTGAGAACAATTTTTCAGGATAATAATTCTTAATTT Found at i:572155 original size:21 final size:21 Alignment explanation
Indices: 572115--572169 Score: 61 Period size: 21 Copynumber: 2.7 Consensus size: 21 572105 TTACCTGAGA * * 572115 AATTTGATTTTAAA-TTTTTG 1 AATTTAATTTGAAATTTTTTG ** ** 572135 TTTTTTTTTTGAAATTTTTTG 1 AATTTAATTTGAAATTTTTTG 572156 AATTTAATTTGAAA 1 AATTTAATTTGAAA 572170 AAAAAAATTT Statistics Matches: 25, Mismatches: 9, Indels: 1 0.71 0.26 0.03 Matches are distributed among these distances: 20 9 0.36 21 16 0.64 ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62 Consensus pattern (21 bp): AATTTAATTTGAAATTTTTTG Left flanking sequence: Indices 571615 -- 572114 TTTTTGTAGATCTACGTAGATCAAGCAGGATTGAGACACACTGACACCACGTGTAAACTTTAGAT TTACTAAAACTAACACTTTTGAAAAATTGGGATTTTTTTTTCAAAAAAAATTGTCATTGGGGCGC ACTTGCAATTTGTGGAATTTTATAAAATTTTTGGTTGCAAATTCGCTCTATTGATAGATTCTTGT TTTTTTCCAAAAAAAATCCAAAATTTGAAACCTCCCTAACTTTCTTCAAATATCTCCGACAAAAA AGTTGTCAACTAACAAAATACTCTAAATTTCCAGTTGAACATTTCTAAGTGCAGTACCTGCTCAC TGGCACATCTGGAAAACTGCCATCCTCTGATAACGACTCCATGTGGTCCGGTCTGATATTTCTCC CAGAATGGCTGAACTCCGGGCACTGCCTCGTTCCATGCCTTTGTCAGTGGATTTTGGGCGACTAC GGTGCCGACGGCAAGGAGCAGAAGCAGAAGGACCATTACCTGAGA Right flanking sequence: Indices 572170 -- 572669 AAAAAAATTTGTTATTTTTTCCAAATTTCAAAAAAAAATATTACAGCAAAACTGTGCATTTTTTA CAATAAATAATATTGATATTCAATGTTAACGCTTAAGAAAAGGGGATACAAATACAGGATGAAGT AGAAAACTTCCATGGCGGGGAGAACAATTGGAGAAGAAGAAAAAGGAGATGAAGAACGGGATTAT TATCAGAAAGGGAGACAGAGATGTGGGGATAGAGATACTCACTTCTTATCCAGTATTATTTAGAG AAAATGATATATGAAACAAATCATATCCCACTACATTCATACTGTGGCAGGAAACTGGTGAGGGG TAGAGGGAACGTGTTCTGAGGACTCTTGAACTTTCCTTTTTTTCTTAAAGGTGGAGTAGCGTCTG TGGGTTTTTTTGCACTAAATGACAGAATACAGTCCCAATGTACCAAATAGAACCGTTAAAATTTT TTAAAAAATTTTCTAAATTTTTTATGATTTTTTTTTCGAAAAAGA Found at i:572636 original size:11 final size:12 Alignment explanation
Indices: 572617--572641 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 572607 TAGAACCGTT * 572617 AAAATTTTTTAA 1 AAAATTTTCTAA 572629 AAAATTTTCTAA 1 AAAATTTTCTAA 572641 A 1 A 572642 TTTTTTATGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44 Consensus pattern (12 bp): AAAATTTTCTAA Left flanking sequence: Indices 572117 -- 572616 TTTGATTTTAAATTTTTGTTTTTTTTTTGAAATTTTTTGAATTTAATTTGAAAAAAAAAATTTGT TATTTTTTCCAAATTTCAAAAAAAAATATTACAGCAAAACTGTGCATTTTTTACAATAAATAATA TTGATATTCAATGTTAACGCTTAAGAAAAGGGGATACAAATACAGGATGAAGTAGAAAACTTCCA TGGCGGGGAGAACAATTGGAGAAGAAGAAAAAGGAGATGAAGAACGGGATTATTATCAGAAAGGG AGACAGAGATGTGGGGATAGAGATACTCACTTCTTATCCAGTATTATTTAGAGAAAATGATATAT GAAACAAATCATATCCCACTACATTCATACTGTGGCAGGAAACTGGTGAGGGGTAGAGGGAACGT GTTCTGAGGACTCTTGAACTTTCCTTTTTTTCTTAAAGGTGGAGTAGCGTCTGTGGGTTTTTTTG CACTAAATGACAGAATACAGTCCCAATGTACCAAATAGAACCGTT Right flanking sequence: Indices 572642 -- 573141 TTTTTTATGATTTTTTTTTCGAAAAAGAAACGGCCGAATGAAGTTTGAATTACCGCCCAAAATAG TGACGTTATTTTTGACATTTTTGCGTTTTCTGGCTCAATATACCACTTTTTTTTTCAGATTTGTC TTCTATAGTTAATTTAAAACACTGTTTTTCAACTTACAAATTTTTGAAAACTTGATAACCTGAAA ATAAATTGGCCTAAAAAAGGCGAAAATGTAGAAAATGACGTCACTCATTTGCGCGGGGATTCAAA AATAATTCGACCGTTTTTTTTTCAATTTTTGCAAGATTGAAAAATTCTAAAAAGTTTCGAAAACT TTGAAAAAAAAATTTTGCAGTTATTTTAGGTCATTAAGGGTGTCTAAAGTTTTATTTCATAGTTG AAAACTGTTCGATAAAGCGGCCGACACCTAACGGTTTAAATTTCGAGTTGGAGCAAAACTCTGAA AAATGGTCTGCTAGGCTATAAAAGTTTAGCAGACCTAATTACATT Found at i:574140 original size:12 final size:13 Alignment explanation
Indices: 574113--574140 Score: 42 Period size: 13 Copynumber: 2.2 Consensus size: 13 574103 AATTTAGGCT 574113 AAATAGCAACTAA 1 AAATAGCAACTAA * 574126 AAATAGGAA-TAA 1 AAATAGCAACTAA 574138 AAA 1 AAA 574141 ATCCGGAAGT Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 12 6 0.43 13 8 0.57 ACGTcount: A:0.68, C:0.07, G:0.11, T:0.14 Consensus pattern (13 bp): AAATAGCAACTAA Left flanking sequence: Indices 573613 -- 574112 TTTAGGCATAGGTTTAGGTTTAGGTTAGGCTTAGGCATAGGCTTAGGCTTAGGTTTAGGCTTAGG CCTAGGCTTAGGCCTAGGATTAGGCCTAGGCTTAGGCCTAGGATTAGGCCTAGGCTTAGGCCTAG GATTAGGCCTAGGCTTAGGCTTAGGCCTAGGATTAGGCTTAGGTTTAGCATAGGTTTAGGCATAG GTTAGGTTTAGGCTTAGGCTTAGGCTTAGGTTTAGGCTTAGGCCTAGGCTTAGGCCTAGGCTTAG GCTTAGGCCTAGGATTAGGCTTAGGTTTGGTTTTTGGCTTAGCCTTAGGCTTTGGCTTAGGTTTT CTGGCAGATCTCATAAGCTGATATTCGCATAGTAAAAACATGGATCTACCAAACTTTAGAATACG AGTTTTTAGTAAGTTGAAAGATTGAATCTATTAGATAACTTAATTGTCTACGTACACTTCAAACT TAAAAGTTTACGCTGGCAGGCCCAAATTTAGAAAAAATTTAGGCT Right flanking sequence: Indices 574141 -- 574640 ATCCGGAAGTAAATCGATATACATTGAGTGAAACCTTCCTTTTCTCCGGTTGATGATGTACGGAA TACTTGATGGGGGTGGAAGGTAAACTGACATTGAAAATGAATGTAGGTCACGGCCCCCATTCGAA GAGACGCGTACACCCGCTCGCGCGCGCGCAGATCACTCAAGGGCAACTAAGATGATGTGTCTCTG AGACGATCACAATATATACAGGGATAACAATTACATCCATTCATCAATTGAATGTATGTATGGGG AATGGTAGCATGCTGAGGAATATGCAAATTTCTGAATTGAAATTTCAAAGGGAAATCCCGGAGAC ACCGGAAAATAATTATTCACAAGTTGTATGTAGATCAAGAAAAGTTTTTGAATTTCTTATTTCAT TGAAGATTTACGAAGGTTTGAATTTTGAAACAATTTGCCCGTTCAGGGTTTAATTTCAAGTGAAA TTTGGAAAGTGTAGATCAAAAAATTCCAAACAGTTTAGTATACTA Found at i:575710 original size:13 final size:13 Alignment explanation
Indices: 575681--575711 Score: 41 Period size: 13 Copynumber: 2.4 Consensus size: 13 575671 TTTGGGCAAA * * 575681 AATTTATTTTTTT 1 AATTTATTTATTG * 575694 AATTTTTTTATTG 1 AATTTATTTATTG 575707 AATTT 1 AATTT 575712 CCATCAGCTA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71 Consensus pattern (13 bp): AATTTATTTATTG Left flanking sequence: Indices 575181 -- 575680 AAAAACATTTTTTTTTGATTTTTAACAAATAAATTGTCCAATTTTGGCACTTTTTAATGGTTTTT GATGGGTTACACCTAGATTTTCTGAATTCTCCATATATTCATTATCCGTTTTCAACAAATTTAGA CAACTTTTTATTTTTGCCCAATTTTTCAGCCATCAGACTGTCCTTTTTTTTGGGCAAAAAATTAT TTTTCTAAACATGATCGAAACTATCATATTCTGAAAAAGGACAATTTTTTAAGGTTGAGAGATCA ATTTTGAGTCCTCTAGCTACAAAAATAACCATTTTAGAGGAGTTTCGAAAGTGAGAATTTTTGAC ACTTTTTTGCCATTTTTGCCATTTTTGCCACTTTTGAATAGTTTTTGATGGGTTACACCTAGATT TAATGAATTCTCCATATATGAATTACCCGTTTTCAACAAATTTAGACAATTTTTTATTTTTGCCC AATTTTTTTTTCAGCCATCTAATGATTGTCCTTTTTTTGGGCAAA Right flanking sequence: Indices 575712 -- 576211 CCATCAGCTAAGGCTCGAGGACTAGTATTAAAAATTTCTAGGCCACTTTCGGGGTTTCTAGGTCA CCACCTGAAAAAATTCAAATTCAGCATGACAAGAGCTTCGAAATAACACCCATATTGACTAGAAT CTCTTAATTTTAACTTTGATGGGTCTCGTCACGAAATACTACAGACTGTCTACAGTAACCCTGGA TGGTATCGTGGTAGGTCCTAAACTTAGGAAATTTGGTCAGTATGGGTCTCATTAAAAAGCTCTCG GCAAGCTGATTACGTCGAAAAAATTGTATAAAAATTCAGAAAAAAAAGTTTCGCCACTTACAAGA ATTATCAGGTCCCGCCAGGAAGTCAATTGTGGCAAATGCTCCACAAACTTTTTCTTTCATACAGT AACCACTTCCACTACGGTATAGAAGGTTAGTCTGGTCCTCTGTGCAATTTGGAAGGCCTGACGGA GGATTGTTCATCAGTGCACAGGCATTTGCTGAAAATTTAAACTTT Found at i:576992 original size:11 final size:11 Alignment explanation
Indices: 576974--577012 Score: 34 Period size: 11 Copynumber: 3.5 Consensus size: 11 576964 TAGAATATTT * * 576974 AAACTAAGTAA 1 AAAATAAGAAA 576985 AAAATAAGAAA 1 AAAATAAGAAA * ** 576996 ATAATTCGAAA 1 AAAATAAGAAA 577007 ATAAAT 1 A-AAAT 577013 TAATTTCAAA Statistics Matches: 21, Mismatches: 6, Indels: 1 0.75 0.21 0.04 Matches are distributed among these distances: 11 18 0.86 12 3 0.14 ACGTcount: A:0.67, C:0.05, G:0.08, T:0.21 Consensus pattern (11 bp): AAAATAAGAAA Left flanking sequence: Indices 576474 -- 576973 TTCGTGCCGAGACCCTCCAAAATTTAAAATTGAGGGATTCTAGTCAATATGGGGGTCATTTAAAA GGTCTCGGTGAGCTGGACTCGATTTTCAGCAAGAAAATAAGTTTCCTCACTAGTATCCGTATATA TCCCATCAAAAAGTCGAACCAAATATGGCTTGCATGTCTTCCAGAATCCGGATTGAGATTTTAGA GCTTCCCTGAAAATTGTTCAAATTTTTTCAAGCTGAAAAAAATTGAAAAAAAATTACGAGGTGAT CCATCCGACATTGATAAGTCCAAGTGAAAGTGTAGAACTGATTGGAAGTGTGAAAACTATAAAAT ATCGATTTTAAATTAGAACATATTATGGGATCACATGCGTACTGCACAACATATTTGACGCGCAA AATATCTCGAAGCGAAAACTACAGTAATTCTTTAAATGACTACTGTAGCGCAAGGTGTCGATTTA CGGGCTCAATTTTTGAAATTAATAAAAATAATTTATAGAATATTT Right flanking sequence: Indices 577013 -- 577512 TAATTTCAAAAATCGAGCCCGTAAATCGACACCTGGCGCTACAGTAGTCATTTAAAGAATTACCG TAGTTTTCGCTACGAGATATTTTGCGCGTCAAATATGTTGTGCAATACGCATTCTAATAACATTT CTCAAAATAAAAATTGAAATGTTTGAAAAAAAAATTAATTCTTTCTGAATTTTTTGAACTTTTCC AAAAACTCTGAAATTGCAGATTAAATTATTTTTAAATCAGAAAATCAATAACTAACAAGCATTCA TCACATTATACGACGAAGATCCACAAGTGACACCTCCAGTCAGGGGTACTGTAGCTGATTGGAGC GTCTCACAGTAACGAATGACAGTTGGGGTCCAATCTGGAAATTATTTTTATTTAAGAAATCATTT GTGTCACGTGGTGTCAGGCTCTTCCCATCACGGTTTGATCTACAAAAAATGCGGGAATTTTTCGC CCTAAAATGTGACGTCAGCAGGCAAAATCAGTTGAGAACTCTGCG Found at i:578764 original size:63 final size:63 Alignment explanation
Indices: 578657--578836 Score: 295 Period size: 63 Copynumber: 2.9 Consensus size: 63 578647 ATTGCGAAAA * * * 578657 TTGAA-AACTTTGGGTCTGCTAGTCTACAAACTACACATTTCGATTTAGCAGACCAATGCCATT 1 TTGAAGAACCTT-GGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCAATGCCATT * 578720 TTGAAGAACCTTGGTCTGCTAGACTACAAACTACAAATTCCGATTTAGCAGACCAATGCCATT 1 TTGAAGAACCTTGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCAATGCCATT * * * 578783 TGGAAGAAACTTGGTCTGCTAGACTACAAACTACAAATTTCAATTTAGCAGACC 1 TTGAAGAACCTTGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACC 578837 CAAATATTCA Statistics Matches: 108, Mismatches: 8, Indels: 2 0.92 0.07 0.02 Matches are distributed among these distances: 63 103 0.95 64 5 0.05 ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28 Consensus pattern (63 bp): TTGAAGAACCTTGGTCTGCTAGACTACAAACTACAAATTTCGATTTAGCAGACCAATGCCATT Left flanking sequence: Indices 578157 -- 578656 GGGCACCCAGAGTCCAGAGGCGATGCATCGATCGAAATGGTACTTGAAGACCTGAAAATTTGGAT TTTTGGATGTTGAAATTAGATGAATTTGGCTAAAAATAATAGCCTACAAACTACTAATTTCGATT TAGCAGACCATAGGTGGTTTTGAAGAAATTTGGTCTGCTAGACTACAAACTACAAAACTCGATTT AGCAGACCAAAATTAAAAAATGCCTGTTTTCAGCTTAAAATTTTGATTTTTGATTCGTTTTTTTT TGGAATACAATGTTAATTCACTCAAAAATTTGAAAATAGATCAATTTTCCCCCGAAAGTTCAGAT TTTTTCAGGATTTTATATTAAAATACGCACTTTTGTCTTAAAACACAAAAATCGCACAATTTTCC ACTAAAAATCGCAAAAAACCTGAATTTTTGCTAATTTCTATTTGAAAAATATTCATTTTTCCGCT GAAAAATTGAAAATTTATCAATTTTTGCAATTTTCATTGCGAAAA Right flanking sequence: Indices 578837 -- 579336 CAAATATTCACCTCTTCATCCATTTTCTGGGCGACACCCTTCAACGCCTCGATATCATGTGCCTC AAAGCACTTTCTCATCTCCTCCGGCAGCTGCTCGAACACTTCCTGTGGATCGATTCCTCCCGGAG CACTCTTCATTCGTTCGGCTTTCTCCTCGGCTTCAGCCTCCTCCATCGCGGCGTCTCTCTTCGTC TGCGCACGTGTTCTGAGACGATCCTCGAACGCCTTCACCTCATCCTGATAGTGCTTCATGTAGAC CGGCTCGGCGGCTTCGAACTTCTTGAAGAATTGCTTCTGGACGGTGGTATTCGTGGCGACTGCGT TCAGCGATTTCGAGAGCTCCAGAAGATATTGAATGATGATGCATTGCTCAGCCATCGTCTTCATT TTCTCCTCATTAAAATCGATGGCGGCGTTGAGAGCCTCAATTGTGAGCCAATTTGCAGTGTACTC CGACGCCATATGCGGATGCTCGGCCAGGAACAGCTCCGTCGACTT Found at i:580126 original size:10 final size:11 Alignment explanation
Indices: 580105--580127 Score: 39 Period size: 11 Copynumber: 2.2 Consensus size: 11 580095 AATTTTCGAG 580105 AAATTTCTTCA 1 AAATTTCTTCA 580116 AAATTTC-TCA 1 AAATTTCTTCA 580126 AA 1 AA 580128 TAGAAATACT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 5 0.42 11 7 0.58 ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39 Consensus pattern (11 bp): AAATTTCTTCA Left flanking sequence: Indices 579605 -- 580104 GGCTTCTTCTTGCGCCTTCACCTCGTCGATTTGCTTCTGAATATCCGACTTGTCAGTGACATCGG CTGCGGCAAGCTTCTTCTCGAGCTCCTCCATCTTCTTGCTCGTCGTGCCCTTTTCCTTATCGATT TTCTCCTGTTCCATCTTCTTCTCGGCCATTCGCTCCAAACGAGCTTGATGGCGCCATCTGAAGAG CGACGGAGTGTCAATGTTCGGGTGAGTGTCGTCCTCGTCGTCGGAAACCTCGATATCCTTCCATT TGGAGTAGTCGATTGGCATTTTTGAGCTGAAAATCGAGAAAATTGAGTGGAAAATAAGGAATTAG CAGGAAAAGCGAGAGAAAACTGATAATCGCTGGAAAATTCCGACTCGGTTGCCACGACAACGAGG ATAATCCGCGTGAAATTACGAAAACAGAAATTTCATGAAGAAAACGTGGCATTATAATGATGTTT CAAAGGATTTACGTGGAATTAACTATTTGCTGAGCAATTTTCGAG Right flanking sequence: Indices 580128 -- 580627 TAGAAATACTACGTTTTCTAGCGGATTTCGGCCTTTTTTTTGGCCCAAAACTCCGACAAATTGAT TTTTAAAAGCCTGTAGAATTAAATTTAGACTTCTAAAAGTGGAAAAAATCGAAGGAAACCCCGAA AATAACATGAGAAAGGCGAAAAATGACTTTTGTTTTTCTTCTCGGTCCTTCTGTGGCAATGCGCG TCAGATATGGTGTTTTCTGTGTGCTTCTGCGTCACGGTGTTTGCACACAATTCCTTTTTCGCTGA TTTTTTTAATTTTCAGCGCGCTGCAGCGCCATTTCTTGCATTTTTCAAGCATTTCCATTGATTTT TCCGCGAAAAAACATCTGAAATTTCAAAAAATCAATGTTAAACTCACAATTTTTCTTCTTCGCAC TCGCTGTCCCTCTTGAAAACTCGCGAAATGACTGTATTTCCTTTTTTTTTCACGCAAAATTTCCA AATTTCCATGTTTTCAGGGTAGTTCAACACGTGAAAATGGCTCTT Found at i:581406 original size:63 final size:63 Alignment explanation
Indices: 581277--581610 Score: 545 Period size: 63 Copynumber: 5.3 Consensus size: 63 581267 TTCGTTTTTT * * * * 581277 TTTG-AGTCTGGCAGACCAATTTCGAATTAAAATCACCTGGGTCTGCTAAATATAATTTTGTAG 1 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCA-CTTGGTCTGCTAAATATAATTTTGTAG * * 581340 TTTGTAGTCTAGCAGACCAATTTCGAAATCAAATCACTTGGTCTGCTAAATATAATTTTGTAG 1 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCACTTGGTCTGCTAAATATAATTTTGTAG * * * * 581403 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCGCATGGTCTGCTAAATACAGTTTTGTAG 1 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCACTTGGTCTGCTAAATATAATTTTGTAG * 581466 TTTGTAGTCTAGCAGACCAATTTCGAATTGAAATCACTTGGGTCTGCTAAATATAATTTTGTAG 1 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCACTT-GGTCTGCTAAATATAATTTTGTAG * 581530 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCGCTTGGTCTGCTAAATATAATTTTGTAG 1 TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCACTTGGTCTGCTAAATATAATTTTGTAG * * 581593 TTTGTAGTCAACCAGACC 1 TTTGTAGTCTAGCAGACC 581611 CATATAAAAA Statistics Matches: 250, Mismatches: 19, Indels: 4 0.92 0.07 0.01 Matches are distributed among these distances: 63 163 0.65 64 87 0.35 ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35 Consensus pattern (63 bp): TTTGTAGTCTAGCAGACCAATTTCGAACTGAAATCACTTGGTCTGCTAAATATAATTTTGTAG Left flanking sequence: Indices 580777 -- 581276 GCGAAAATACCGCAATTTTAATATATTGTATATTTTCAGCTGCTCCAACAATCTCCCAGTCAATT TCCACATTGACGTCTGGAATGCGCACTTATTACGAGCCAATCATGCCAAGTCACTTCGAATGGCA CGCTATTCAGTTGGGAGGCCTCACTTTAAGGGTGAGGAACAGGAAAAATCGAAAAAAAATCTTAA ATTTAATGAATTTTCCAGATGTACCCAATGCTGACCGCTTTCACCGAGTTCGCCGCCGCCTTCTC CGCTCCGTTCCCAACTTCAGGACGCCCGGGGCTCCATTGGGCAAATACGACGTGCACCGTGTTGA AAGGAAAAGTCAGCCGATTCAATGACGGAACTCAGGACGAGACGTCGGAGAACTTTGCTTCGGGA GCCGCTTTCAGGCACGGACAGTTCGAGTCCCACGTGTACAGCTTCGAGAAGGACACCTACGTCGC GTGCTACGGTAAATTACACCGAAAATCAAGGAAAATTCGTTTTTT Right flanking sequence: Indices 581611 -- 582110 CATATAAAAATCCCCTCGTTTCTAATGAATTTTTATATTTTTCAGGTCGCGGCTTCCTCCCACTC TCCTCCACCGTCCACGTCACCTCTGGAATCTCACTCGGCGAGCCACTCTCGGTCATTCAATTCTA CATGAAGCAGGCCTACAACTACTGGAACAACCTGAGCCACACCCTCTATCGTGTCTTCCAGCACT ACAAGGCCCGCGCCACTGGAGAACTTTAAATAATTTATGTGATTCCCCATCCGGTGCATTTCTAC AAGCATTCTAACCCGAAATTTTCATTTATTCAGTCATGTTTTATCCCAATGTCCCCCCTCTACTT CCATTTTTACGGTTGTGTAATTCGATTTCTTGAGCCATTTTATTGCATAATTTAAAATACAAGAA CATATTTATTTCATCACCTCAACCATTTAACCATATAGCTCAACCGAAAAAAATAATTGCACAGG TATTTGAAGGCATTTGCAGTGAAAGATGATCAAAAGTCGCTGCTT Found at i:584776 original size:11 final size:11 Alignment explanation
Indices: 584762--584791 Score: 39 Period size: 11 Copynumber: 2.8 Consensus size: 11 584752 ACCCCCTTCC * 584762 CTCTCCTCTCT 1 CTCTCATCTCT * 584773 CTCTCATCTTT 1 CTCTCATCTCT 584784 CTCT-ATCT 1 CTCTCATCT 584792 GCTCAGTACC Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 10 4 0.24 11 13 0.76 ACGTcount: A:0.07, C:0.43, G:0.00, T:0.50 Consensus pattern (11 bp): CTCTCATCTCT Left flanking sequence: Indices 584262 -- 584761 TTAGTGTGGAATTAAAAAAAGGTATTAAAACTCACTGCTCAATGAGGCACATTTGTCGAAGAGTA ATGCTGATGATTTCTTGTGGTAGAAGCAGAAGAGGAAAAGGGGTCCTAGTTGTGTCACCCATGGC AAGGAATGGTTGTAACTGCTGAAAACTTTCGAATGTTCTTCTTGAAAATCAAGAAAAAAATTAAG AAGACGTAAAGTAACGAAAGAAATTAATTTGCTTGAAAATAAAAAAAAAAGGATAAATGGTCCTT AGAACAAACAGACAAAGAGAAGAGAACATGAAAATAGAGCGTTTTAGAAGAACGCGGTCAGTGTG CGTATTAGTCTTGTTGCAGTCTGATGTGTCGTCTTTATAGTACGCTGCAAAACGAGCACACCTGG GGGACTGTGTGTATGATTACAGTAGACTCCTCGTTAGATGGTGTGAGAACGGGGGGAGGCGAGTG GCATTTTCCAACAAAAAGATATCTGCATTTCTCCCACCCCCTTCC Right flanking sequence: Indices 584792 -- 585291 GCTCAGTACCATCTTTATTATTATACGTGATCTTACATCGGCATGACTACCGTCTCCTTTCCCAT CCTTCGTCTCCCTCAATCTATATTTCAAAAAACGCTCAAACAAATGAGCCTAGTAGAACAGTGAG TTTTAATAGAAATTTTAATACTTCTGTATTCTATAGTTAATTTTTATTTGGGAATGTACGAGAAT TATTGTTGAATTATCATAGTCTAGGCAACAGCCAAAAGATGAAAGCTATGTCATTCGATAGCCAA TACCTTCAATCTGGAAAATGGTCATTTGTGAATTTCCAGAACCTAGCTGACGAAATTTTTAAAAT TAAAACTTTACAGATAGTTGTCATAAATTACCAAAATATGCAATATATGTATAGAAAAGAATAGC ACACCTTTACAATTAATGCAAAAATATATTTTATTTAAAATGCATGGATCTAACCACAAGTTCCA AATTTATTTTAATGAGTTATTTACATTTTTCATGTTCAGCATCTC Found at i:586413 original size:64 final size:64 Alignment explanation
Indices: 586310--587104 Score: 1359 Period size: 64 Copynumber: 12.4 Consensus size: 64 586300 TAAAAAAATA * * * * * 586310 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATATTGAATACCAGCAAGTTGGGTCTGCCAAATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * 586374 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAGTTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * * 586438 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAATAAATTGGGTATGCCAAATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * 586502 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAATAAATTAGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * 586566 AAATTTTGTAGTTTGTAGTCTAGAAGACCCATTTAGAATACCAACAAGTTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * * 586630 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATATTGAATACCAATAAATTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * 586694 AAATTTTGTAGTTTGTAGTCTAGAAGACCCATTTAGAATACCAACAAGTTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * 586758 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAATAAATTGGGTCTGCCAAATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * 586822 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAGTTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * * * 586886 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATATTGAATACCAGCAAGTTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * * * * 586950 AAATTTTGTAGTTTATAGTCTAGAAGACCCATATTGAATACCAATAAATTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC * * * 587014 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATATTGAATACCAATAAATTGGGTCTGCCAGATC 1 AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC 587078 AAATTTTGTAGTTTGTAGTCTAGCAGA 1 AAATTTTGTAGTTTGTAGTCTAGCAGA 587105 ACTTTGGCTA Statistics Matches: 689, Mismatches: 42, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 64 689 1.00 ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32 Consensus pattern (64 bp): AAATTTTGTAGTTTGTAGTCTAGCAGACCCATTTAGAATACCAACAAATTGGGTCTGCCAGATC Left flanking sequence: Indices 585810 -- 586309 TATTTTTCTCTAATTGTTCAGAGTTTATCGTAACCTGTGACAGCTTTTCCATCAAAGATCTGAAC ATCCTTGTAAGACAGTGGATAAGAGGAGCTATCCCCAGTCTCAAATCAATCACTATCCGTTTTCG GAACATTACTGAGAACCGTTTTGATGAATGCGCACTTTTCAAAGAAATCGAGTATACTAGAAAGG AAGAAGTTCAGTCCGTAAAAAGGTTTACAATTGAGAGACATGATGGAACCATCGCGAACGTCTTG CTTTATTCAACAACTCGTTTTTACTTTACTCTCGTTGTTGGTGAATACGAGTGGATTGGACACTT TGCGAGCATATGGATGTAGCTCATTGACTCTGTATTTTTTATTCGCCTGATTGTGAATATTGTTT CTTTTTCAAAAATACAATAAATAATTTATTGATTCTTTTTACATGTTGTTTAGAAAAATTATTCC AGCTCAAAACCAAACCAAGAATCAAAATAAAAAAATAAAAAAATA Right flanking sequence: Indices 587105 -- 587604 ACTTTGGCTAAAAATTTAAGTTCGTATTGATTTTTAAGTAAGAGAACGCTCACAGAAAAAAATAG CAGTGAACGCGATCAAATTTGGTGTGATGTTTTATTATCGTGCAAAGAAAGGCCAGTTCTGTCAA TGGTAAGATAATTTAAATCAAGCCAGTGCTTGAACAATGTGTACCGACATTAAAACTTAAGCAAA TGTTAGTGGCTAGACAAATCCCGACGTTCGCCTGAACTCCATCGATCCTTTCAATTGTATACCTT CTCTTCTTCGGCCGGACTTCTTCCTTCCAAGTGTATTCGACCCCTTTAAAAAGGACGCTCTCATC GAAACGACTTGGTATAATTTGCGAAAAACTAATATCGATTGATTTGAGGCAGGCGTTAGATCCTT TAGTCCATTGTCTCATCAAGATGTTCAGCTCCTTATTGGTGAAACTGGAGTTTATTATTCGAAAC TGCGAGCAATTTGAAGCTAGTAAATCATCAATTGTCACTTTTTCT Found at i:592002 original size:10 final size:11 Alignment explanation
Indices: 591986--592028 Score: 51 Period size: 11 Copynumber: 4.0 Consensus size: 11 591976 AATTTTCGAG 591986 CATTTTTTATT 1 CATTTTTTATT 591997 CATTTTTTATT 1 CATTTTTTATT * * * 592008 GATTTTGTA-C 1 CATTTTTTATT * 592018 CATTTTTCATT 1 CATTTTTTATT 592029 GTTTTTTCGC Statistics Matches: 24, Mismatches: 7, Indels: 2 0.73 0.21 0.06 Matches are distributed among these distances: 10 6 0.25 11 18 0.75 ACGTcount: A:0.19, C:0.12, G:0.05, T:0.65 Consensus pattern (11 bp): CATTTTTTATT Left flanking sequence: Indices 591486 -- 591985 AGTTGACCTACTACTCAGCTCTACGGATTATGCAAACGAACCAGTACTAAAATGGGTTAATAATC TGATACGCCGCGTGATGTCAGGCTGTCCCATTTCGGTTTGATCTACGTAGATCTACGAGAATCGC AGGAATTTGAACGCAGACTCCCCTCTGACGTCACATTTTTTCGGAGAAAAAATTCCCGCATTTTT TGTAGATCAAACCGTAATGGGGCATCATGACTTTACTTGATAATGTGCTAAAAACAAAGGACATA AATCCGAAAATTTGAAACTATTAAAGGTGGACTACGCCCAATGGGGAAATTGCTTTAAAACATGC CTATGGGGTCACAATGACCGAATATCATGATAAAAAATTTCCCTGATTTTATATGATTTTTTGAA AGTTGAAAAAATCTCAGTTTTCACCTAATTCCTATTTGAATTACCGCCAATATAAGGCGTTGAGT CCGATGGAGCGCGCCTGCATCACCATCAATAATTTAATTTTCGAG Right flanking sequence: Indices 592029 -- 592528 GTTTTTTCGCGATTTTCTTATTAAAAAGGTGAAAATACTTTTTTTATAATTTATTTCATTGATGA AACGCAACAATAACTCATGAAATCATCAATTTCCAGGCAGGAGACGGCGATGGACACGGAATCGC GGCCAACGAGGAGCTGCCGAGATTAAGTAGAGTGAGTTTTCAATTATAAAAATGTAAAAAAGCAA ATAACTTTGTTGAAAATAAAAAGTATTGGCTTGAAATCGAAAAATCTATCTAATTTTCCACTATT AAAAAGCCAATTTCGGTTCTTTTAACTAAAAGTTGAGTTTCTCTCGATAAAAAAAATTGATTGTT GTGACATGAAAAGTTGAAGAAATCAACCAAATTTTTAATTTTTGGTAATGCTTCCAGTTCCCAAG CGTTGCAAAAAATTCGCTAATAATCCATTTCCCGTTGAGGATAATTTTCTGTGAATTAGCAATTA AATTGAAAAATTATTTTATTATAAAGATTAAATAAAAAATTAAAA Found at i:593238 original size:11 final size:11 Alignment explanation
Indices: 593218--593245 Score: 49 Period size: 11 Copynumber: 2.5 Consensus size: 11 593208 AAAATGGTAC * 593218 AAAATCAATAA 1 AAAATGAATAA 593229 AAAATGAATAA 1 AAAATGAATAA 593240 AAAATG 1 AAAATG 593246 CTCGAAAATT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.71, C:0.04, G:0.07, T:0.18 Consensus pattern (11 bp): AAAATGAATAA Left flanking sequence: Indices 592718 -- 593217 ATTTGAAGCTGAAACCATAAGAAAACACTCTTACAATTAGTCTTTCCATAAATAGTTTATAAAAA AGTATTTTTCGCTATTTTAATAAGAGTTATCCTCAACTGGATATAGATTATTGGCGAATTTTTAT ATTTGAATATATCTGAAAGAGAAGTGGTTTCAGAAAAATTATGATAATTTTTTAATCGAGAAGTT TTTTGATAAAAGAACCGAAATTGGCTTTTTAATAGTGGAAAATTAGATAGGTTTTTCGATTTCAA GCCAATACTTTTTATTTTCAACAAAGTTATTTGCTTTTTCACATTTTTATAACTGAAAACTCACT CTATTTAATCTCGGCAGCTCCTCGTTGGCCGCGATTCCGTGTCCATCGCCGTCTCCTGCCTGAAA ATTGATGATTTCATGAGTTATTGTTGCGTTTCATCAATGAAATAAATTATAAAAAAAGTATTTTC ACCTTTTTAATAAGAAAATCGCGAAAAAACAATGTAAAATGGTAC Right flanking sequence: Indices 593246 -- 593745 CTCGAAAATTAAATTATTGATGGTGATGCAGGCGCGCTCCATCGGACTCAACGCCTTATATTGGC GGTAATTCAAATAGGAATTAGGTGAAAACTGAGATTTTTTCAACTTTCAAAAAATCATATAAAAT CAGGGAAATTTTTTATCATGATATTCGGTCATTGTGACCCCATAGGCATGTTTTAAAGCAATTTC CCCATTGGGCGTAGTCCACCTTTAAGAAAAAAACGGTTTGCTAGTAAGTTTTTTCAGTTACCTAA CTAACTAAAAAGTATGTCGAAAATCGTCAGACTTCCACCGTACCATTGTTGTCTCAATCCCATCG AGCTCATTTGGAACCAGCTGAAAAGCTTCCTGCGCAAGCATGGAAAACTTGACAGCAAACTGGAA ACAGTAAGATCATTTTTACCAAATTGCTTTCAAATTTTCTGATATTAAGGTCCGTACTCAAGCGA TTCAATTTCTTAAAAGCATCGACGAGGAAGCTGTGGCAAATACAA Found at i:594117 original size:11 final size:11 Alignment explanation
Indices: 594103--594124 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 594093 AAATAAACAG 594103 AAAACACATTA 1 AAAACACATTA * 594114 AAAACATATTA 1 AAAACACATTA 594125 TCTTTATTCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.64, C:0.14, G:0.00, T:0.23 Consensus pattern (11 bp): AAAACACATTA Left flanking sequence: Indices 593603 -- 594102 CGCAAGCATGGAAAACTTGACAGCAAACTGGAAACAGTAAGATCATTTTTACCAAATTGCTTTCA AATTTTCTGATATTAAGGTCCGTACTCAAGCGATTCAATTTCTTAAAAGCATCGACGAGGAAGCT GTGGCAAATACAATGGATCACGTTATGGATGCTGAGATTGACCTTAAGACTATTATGGATGCCGA TTTTGAGCAAAATCTACGCGATGATGAGATGGATTCGGGGGATGATGACATCAGTTTTTGATATT TTTCTTTTCAGTTCATCTCACCTCTGCAATCGACACATCGAACGCTGTTATTCTTCTAACTTTGT TTCCTGATCCTGAAAATAGAATTTCTTTAGATTTTTTAAAATAAAATAAGAATTAAACATACCTT TATAAAATGAAAAAACCGGCGAATTACCTGAAATTGCTGAAAAAGAGGATTAAAAATGCAGAAAA GCTAGTGAGGGTGTATCCTTTCAATTTTCCATAAAAAATAAACAG Right flanking sequence: Indices 594125 -- 594624 TCTTTATTCAAAAAATTATTTTTTACAAGAAAACAAAAAAAAAGAGGAAGAAAAATGGATAAAAA CAACAGAAATTAGAAGAAAATCGGTCTGTGCTAAAGAAAAAAAATCAAGAGAAATGCTCCGTAAA CCGACACCTCGTAAATCGTTTCGTCTCTTCCCCGCGCCAAGGTTGAGCTTTTGAAGTCTAACTTC AGATTATGTTTCTGAATAAAATTGAAAATCCCACATCTTATAATTATCAAAATCAGGATTTAACA TCATACTTTATTAAAAGTGAACGCTTATTATATTAGTAGTGCGTGTTTCTTTCATTTCAATGCAC ATCCGATCCTATTTCGTTCAAAATTATTCCGTATTCCATTTTTTGTTGATCTCTCATGTTTTGAA AGTTGAAAACTTAGTTTCTACAATAAATGAAGAAAAGTTAAAATGATAAACAATAAATTACTAGA ACCCACGAGAGAGGTTTTTAAATTTTTGCTCGTTTTGGACTAATT Found at i:595692 original size:28 final size:28 Alignment explanation
Indices: 595660--595718 Score: 111 Period size: 28 Copynumber: 2.1 Consensus size: 28 595650 GTTAGGCTTT * 595660 AAACTACAAATTTCAGACTACAAACTAC 1 AAACTACAAACTTCAGACTACAAACTAC 595688 AAACTACAAACTTCAGACTACAAACTAC 1 AAACTACAAACTTCAGACTACAAACTAC 595716 AAA 1 AAA 595719 ACTGCTAATA Statistics Matches: 30, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 28 30 1.00 ACGTcount: A:0.53, C:0.25, G:0.03, T:0.19 Consensus pattern (28 bp): AAACTACAAACTTCAGACTACAAACTAC Left flanking sequence: Indices 595160 -- 595659 TAGCAGATCCACATGGCTATTCAATAATCTCTTCAAAATGTATTTATCAAAAAATTTATCAAATT TTTGAAATCTCAAATCAAAAAAATCACAACATTATGAATTGAAGAAAGAGGTAAAATTATATTTT CTGAAAACCCGAAAAGTTTAAAATCTCAATGATTTCAGCTACTTGTACTTGTAGCTTCGCACCGT GTTCCTCTCAAAATCCGTCACAAATGCCTTATTTTTGTGCACAAAAATGCCGCATGGAGCCATAA ACTTTTCGTGTGGCCCCGGTTCGATGGAGTACAGGAAGTCGCCTTTGTAGCTGATTACCTGGAAA TTTTATGTTTTGAATTTCTGAGCAAGCTCTCAGCCAAATTTTTTACCCCAATATTCGTGCGATCC ATCTTTTTGTCAGTGAAGATTACTACGATTTGACCGGTTGTGACGTCACAGGTTACTGTAGTTAT GTTGAAGCGGCCGCGCGGCCGCTGGAAAATATAGAGTTAGGCTTT Right flanking sequence: Indices 595719 -- 596218 ACTGCTAATAGCAGACCCATGTCCAAACCGTTCAAAAACCAAAACTTCTCAAAATCCCAACTCAC CCAACTTTCGGCATAACCGTCCCGGGAGGCGACACATTCAACTTCCTGAGCATTTTCCCGGCTCC ATCATACAACAAAAGCTCATCGGTGGTCCCAACAATGACGTCATCATCGAGCCCAACACCCACGC ACTTCACCTCGGCGCCCTTCGTCTCTCGCACCGGAAAACTGAGCAGCGGCTTGAAATTCGAATCA AAAATGAAGATTTTCGTTTTATCAGCTATCACAAATCGGCCACGCGAGTCCACTGCAACATCCGT CGGCTGGTAGAACTCGGAAAATTGGACGGCTTTCAGGATTTCGCCACGTGTATTTAGTTTGCTGA GCATTTTGCGCTGCCAAGACAGGACGACGAGCTCCTCGTTACCCAGGTATACCATTCCGACAGTG CCGCTCTGAAAAATGTGGTATTTATCGATAGAGCGCATTTGCATC Found at i:599368 original size:19 final size:19 Alignment explanation
Indices: 599346--599384 Score: 78 Period size: 19 Copynumber: 2.1 Consensus size: 19 599336 AATTTTTTTC 599346 ACACTGTTAAGAGATTTAA 1 ACACTGTTAAGAGATTTAA 599365 ACACTGTTAAGAGATTTAA 1 ACACTGTTAAGAGATTTAA 599384 A 1 A 599385 AAAAAAATTA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 20 1.00 ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31 Consensus pattern (19 bp): ACACTGTTAAGAGATTTAA Left flanking sequence: Indices 598846 -- 599345 GAAAAAATTTTAAAATTTTACTGAAAAATTATCCTCAAATTTTTTTCTGCTGATTGATTTAAAAT GCATAGCTTGAAAAAATTTCAAAATTGATTGTAAATAAATTTTCGTTTTGAAAAAAAATTAAAAA ATTAATTTTCCAAATTAAAAAAAAATCAAAATATTAAATTTTTAGGGTCTAAAAAATGTTTTGTA TACTTTTTCCAAAAAAAGATTTTCTACGAAAGAAAACTTTTTATCTAAAGAAAACACTAAAAAAA ACGAAAAATATATAAAACGATGCTGAGAGGCTAGGGACCAGTGCGAAGTTGGAGGGTGGCAGACA GCTAGTGTAAACACTAAAACAGTAACATAACAATAGACACGCACCCCCATTTTTTCTTCACTTCA TACTAACACAGAGAAAAATATCATGTGGAACGGTGGAAAAAGTTTGGCGGAAAACAAAAAAAAAA TTGAAAAAAAAAAAACATAATTCCTAATTTTTTTAAATTTTTTTC Right flanking sequence: Indices 599385 -- 599884 AAAAAAATTATAAACTGTCAAATTGTTAAAAATGCTGTGCTCAACAACTTTTTAGTTAACAATTT TATGTTAGCTTCACCGATTTTTAAGGTATGACCCAAAAAACATAAGCTTCATCTAAAAAAAATTA GTCTTGAAAATTTTTTAAAGTCCCAAAAAAGTAGAGTTTCAAACTTTTCAAAATTAGTGTTGTAT ATGAGTCGATAGGTAATGTAATGCTGATTATCTTGTCAGTTGACAATATTTTTGTAGCTCCGCCC ATTTTTGAGTTTTGACCCAAAATGTTAGAGTTTCGAACTGAACATTTCAAACTTTTTTTTGGAAA AAATTACAAAACCCTAGAGTTTCGAATTTTTTGGAATTATATGCTGACTTATTGAGAATTAAATG CTGATTATCTTGTCAGTTGACAATTTTTTTATTAGCTCCACCCATTTTTGAGTTGGGCCGATTTT CGAAAAAAAATTGTTTAATGTTTCATAATTTTTATTTCAATTTTG Found at i:600441 original size:11 final size:11 Alignment explanation
Indices: 600427--600455 Score: 44 Period size: 11 Copynumber: 2.6 Consensus size: 11 600417 GATTTTTAAC * 600427 AAATTCAAAAA 1 AAATCCAAAAA 600438 AAATCCAAAAA 1 AAATCCAAAAA * 600449 AAACCCA 1 AAATCCA 600456 CTTCACCACG Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 11 16 1.00 ACGTcount: A:0.69, C:0.21, G:0.00, T:0.10 Consensus pattern (11 bp): AAATCCAAAAA Left flanking sequence: Indices 599927 -- 600426 GCATTAATCTGTTCAACAATCTTATCCACATTCCCGTCAAGCTGCACAATTTCCCTATTAACAGT CACGTGAGCATCGTCAAGTGCTCGGAGCCGTCCTTTTGCACGGTATACCACAATTTCAGACATTC TTTTGATTGCAATAGATAGCGGAACTACCGTATGCTCATCACATTTTTTGCTGAAAATTTGGGAA TTTTAGGGATGTTTTTAGAATTTTTTGAGAAAATTGTGTTTTTAGATTTTTAAATTTAAATTAGA TTTTTTTTTTTAAACACTGAAATATAAAAATAAAATAAAAATCAGAAGTTTTTAGAGCCAGTATA TACAGTAAATAATGCTGATCATTATTTCAATTGAAAATGTTGCTCTAGCTCCGCCCATTTTTGAG CTACTGTAGTTTTAAAAAAATTTCAGAAAAATATGTTTTGTTTTTTTTTTCAAATTTCAAATTAT TTTTTTTAATCATGCTTCTAATAAAGATTTTTATAGATTTTTAAC Right flanking sequence: Indices 600456 -- 600955 CTTCACCACGGAATCCTGACAATTTTCGCAGAAAACCAAATCACAAGTCTCACAGTACAAAAGTT GGTCTGTCGGGTGATTGGAGCATGATGGGACGACGTCTTTGCGTTGTATCTGTAAAAAATTCGAA AATTATAGTACTAACATTGGAAAAATTAGTTTTCAAAAAAAAAATTTTTTTTTTTGATTTTTGAA AAAAATTTTTTTTGTTTTTTCAAAAATTCAAATTTCAAATTTCCCGCCAATTTTTTTTTTTCAAA ATAGTTTTTCTTACCTGCATCACATCCAACAGCTGATTGATAAAAAACGCTGCTGGAAATAGGAT GACTCCGCCGGCAGGAATCGGGCAAACCTCACGGCACAGTGGGCATCGTAGAGTAGGCGGCTGGG TCTGGAAAAATTCGAAATTTTTAGAAAAACTAGAAGTTTTTGGCAAAATCTAATAATTTATTTGA ATTCAGGGGAATTTTTTACCGCTACTAAAAAATTTTCAGAGCTCT Found at i:600874 original size:19 final size:19 Alignment explanation
Indices: 600850--600894 Score: 55 Period size: 19 Copynumber: 2.4 Consensus size: 19 600840 GCTGGGTCTG * 600850 GAAAAATTCGAAATTTTTA 1 GAAAAATTAGAAATTTTTA * * * 600869 GAAAAACTAGAAGTTTTTG 1 GAAAAATTAGAAATTTTTA * 600888 GCAAAAT 1 GAAAAAT 600895 CTAATAATTT Statistics Matches: 20, Mismatches: 6, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 19 20 1.00 ACGTcount: A:0.47, C:0.07, G:0.16, T:0.31 Consensus pattern (19 bp): GAAAAATTAGAAATTTTTA Left flanking sequence: Indices 600350 -- 600849 TGTTTTGTTTTTTTTTTCAAATTTCAAATTATTTTTTTTAATCATGCTTCTAATAAAGATTTTTA TAGATTTTTAACAAATTCAAAAAAAATCCAAAAAAAACCCACTTCACCACGGAATCCTGACAATT TTCGCAGAAAACCAAATCACAAGTCTCACAGTACAAAAGTTGGTCTGTCGGGTGATTGGAGCATG ATGGGACGACGTCTTTGCGTTGTATCTGTAAAAAATTCGAAAATTATAGTACTAACATTGGAAAA ATTAGTTTTCAAAAAAAAAATTTTTTTTTTTGATTTTTGAAAAAAATTTTTTTTGTTTTTTCAAA AATTCAAATTTCAAATTTCCCGCCAATTTTTTTTTTTCAAAATAGTTTTTCTTACCTGCATCACA TCCAACAGCTGATTGATAAAAAACGCTGCTGGAAATAGGATGACTCCGCCGGCAGGAATCGGGCA AACCTCACGGCACAGTGGGCATCGTAGAGTAGGCGGCTGGGTCTG Right flanking sequence: Indices 600895 -- 601394 CTAATAATTTATTTGAATTCAGGGGAATTTTTTACCGCTACTAAAAAATTTTCAGAGCTCTAGTG CAAAGTGTCGCAAGATCTGGTGTTTAGGATTACTGTAGCTTGATTATTGCGGACTTTGCACCGGA TTTCACGAAAAAATGCACAAAACTCGGGGTAAAAAATGACGCTGAATTCAAGAAAAGCAGTTAAA ACGTTGAAAAAAAAAATTTCAAAGTGGTGAAAAATTACCTCGGGGCTGAGCTCGGCGAGCTGGGT CACACAGAAGAGGCAGACGGAGTGGGAACACGGTAGGAGCTTTGGCTTTCGGGTGTTCTAAAAAG TTTTCATTTTATTTATTCAAAAAAAGTAAAAAAATGGAAAATTTAGATTTTCAACAGAAAACAAT TTTTGGAAAAAAAATATTTAAAAAATATTTTTTCCCAAAATTTCCGAAACTTTTTCCAATAGCTT CAAGTTTTCTAAAACTCTACGTTTTTACAATTTTCCTCACTAGAA Found at i:601309 original size:12 final size:11 Alignment explanation
Indices: 601293--601314 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 601283 ATTTTTGGAA 601293 AAAAAATATTT 1 AAAAAATATTT 601304 AAAAAATATTT 1 AAAAAATATTT 601315 TTTCCCAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (11 bp): AAAAAATATTT Left flanking sequence: Indices 600793 -- 601292 AGGAATCGGGCAAACCTCACGGCACAGTGGGCATCGTAGAGTAGGCGGCTGGGTCTGGAAAAATT CGAAATTTTTAGAAAAACTAGAAGTTTTTGGCAAAATCTAATAATTTATTTGAATTCAGGGGAAT TTTTTACCGCTACTAAAAAATTTTCAGAGCTCTAGTGCAAAGTGTCGCAAGATCTGGTGTTTAGG ATTACTGTAGCTTGATTATTGCGGACTTTGCACCGGATTTCACGAAAAAATGCACAAAACTCGGG GTAAAAAATGACGCTGAATTCAAGAAAAGCAGTTAAAACGTTGAAAAAAAAAATTTCAAAGTGGT GAAAAATTACCTCGGGGCTGAGCTCGGCGAGCTGGGTCACACAGAAGAGGCAGACGGAGTGGGAA CACGGTAGGAGCTTTGGCTTTCGGGTGTTCTAAAAAGTTTTCATTTTATTTATTCAAAAAAAGTA AAAAAATGGAAAATTTAGATTTTCAACAGAAAACAATTTTTGGAA Right flanking sequence: Indices 601315 -- 601814 TTTCCCAAAATTTCCGAAACTTTTTCCAATAGCTTCAAGTTTTCTAAAACTCTACGTTTTTACAA TTTTCCTCACTAGAAAACGGTAAAAGAGCTTAACAAAAAGTCTAAAAGTACACATTGGTGACATA ATACTACTAGTACATACTACTAGCGAGACGCAGACACATCAAGACTTTGTCACGAGGGTATGTTG CTTGCAGAGCACATACACACATTATATATGCATATATTCCGTGAAAAAGTGTCCATTTTACATGG CGAATGCACCTGCACCAAGAAATTTGATAAGCGGGTGAATTTGGAACATTTTGGCTTGTAACTCA AAAAGGGGCGGAGCTAGGAAAAACTGTCAACTGAAAAAATGTTGGAAATTTTATTTTCTACAAAA TCAAATTTATAAAATATTTTTGAAACTCTGGAAATCTAGATTTTCAGGACTTTTTCTCTACTCAA CGCAAAGCTTCGGGGGTTAAACTCGTTAACTTTGGCCTATAACTT Found at i:601901 original size:12 final size:12 Alignment explanation
Indices: 601882--601910 Score: 51 Period size: 12 Copynumber: 2.4 Consensus size: 12 601872 TTTCTATTTG * 601882 TTTTTCAAAACT 1 TTTATCAAAACT 601894 TTTATCAAAACT 1 TTTATCAAAACT 601906 TTTAT 1 TTTAT 601911 TTAATAAAAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 16 1.00 ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52 Consensus pattern (12 bp): TTTATCAAAACT Left flanking sequence: Indices 601382 -- 601881 TTCCTCACTAGAAAACGGTAAAAGAGCTTAACAAAAAGTCTAAAAGTACACATTGGTGACATAAT ACTACTAGTACATACTACTAGCGAGACGCAGACACATCAAGACTTTGTCACGAGGGTATGTTGCT TGCAGAGCACATACACACATTATATATGCATATATTCCGTGAAAAAGTGTCCATTTTACATGGCG AATGCACCTGCACCAAGAAATTTGATAAGCGGGTGAATTTGGAACATTTTGGCTTGTAACTCAAA AAGGGGCGGAGCTAGGAAAAACTGTCAACTGAAAAAATGTTGGAAATTTTATTTTCTACAAAATC AAATTTATAAAATATTTTTGAAACTCTGGAAATCTAGATTTTCAGGACTTTTTCTCTACTCAACG CAAAGCTTCGGGGGTTAAACTCGTTAACTTTGGCCTATAACTTAAAAAGGGGGCGGAGCCAACAA TAAACAGTCAAGTGGCAAAATATTCGGCGCATAGTTTTCTATTTG Right flanking sequence: Indices 601911 -- 602410 TTAATAAAAACCTAACATTTAATTATTCTGGGGGCTTTGGAAAATTTTTTTAAAATTTTGTTCGA AACTTTTTTTACAAAATTTCATCCCAAATTTTCTGCCCAAACTCACCCCGTCATAGGTATAAAGA CACGTTGAACATGTCAAAAATGTTTCCGAAAAGTCGTCCACATTGATATTCACAGTTTCTACTAG TGATGTGCTAGTAAACATTACCTGAAAAATTGAAATTTTTAGAGGGAGAAAAAACAGAAAAATAT TGGAAAATTACAAAAACTTTGAAAAATAATCGAAATCGATAATGAAAATAGTATAATTAAATGTC TTAGAATTTATGTTATGAAAATAATATTTAGAAAAAAAAAATCAAAAATTCCAATAATTTCTACC TGAAAAAATCTAACAATAAGGAATCTGTAAAACAATAAACTGAAATTTCTAATTTTTTTACGAAA ACTTTGACAAAATTACTGAAAATCAGTAAAACAATGCTCCAAACT Found at i:601967 original size:11 final size:11 Alignment explanation
Indices: 601951--601986 Score: 40 Period size: 11 Copynumber: 3.1 Consensus size: 11 601941 GGGGCTTTGG 601951 AAAATTTTTTT 1 AAAATTTTTTT * 601962 AAAATTTTGTTCG 1 AAAATTTT-TT-T * 601975 AAACTTTTTTT 1 AAAATTTTTTT 601986 A 1 A 601987 CAAAATTTCA Statistics Matches: 20, Mismatches: 3, Indels: 4 0.74 0.11 0.15 Matches are distributed among these distances: 11 9 0.45 12 4 0.20 13 7 0.35 ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56 Consensus pattern (11 bp): AAAATTTTTTT Left flanking sequence: Indices 601451 -- 601950 CTAGTACATACTACTAGCGAGACGCAGACACATCAAGACTTTGTCACGAGGGTATGTTGCTTGCA GAGCACATACACACATTATATATGCATATATTCCGTGAAAAAGTGTCCATTTTACATGGCGAATG CACCTGCACCAAGAAATTTGATAAGCGGGTGAATTTGGAACATTTTGGCTTGTAACTCAAAAAGG GGCGGAGCTAGGAAAAACTGTCAACTGAAAAAATGTTGGAAATTTTATTTTCTACAAAATCAAAT TTATAAAATATTTTTGAAACTCTGGAAATCTAGATTTTCAGGACTTTTTCTCTACTCAACGCAAA GCTTCGGGGGTTAAACTCGTTAACTTTGGCCTATAACTTAAAAAGGGGGCGGAGCCAACAATAAA CAGTCAAGTGGCAAAATATTCGGCGCATAGTTTTCTATTTGTTTTTCAAAACTTTTATCAAAACT TTTATTTAATAAAAACCTAACATTTAATTATTCTGGGGGCTTTGG Right flanking sequence: Indices 601987 -- 602486 CAAAATTTCATCCCAAATTTTCTGCCCAAACTCACCCCGTCATAGGTATAAAGACACGTTGAACA TGTCAAAAATGTTTCCGAAAAGTCGTCCACATTGATATTCACAGTTTCTACTAGTGATGTGCTAG TAAACATTACCTGAAAAATTGAAATTTTTAGAGGGAGAAAAAACAGAAAAATATTGGAAAATTAC AAAAACTTTGAAAAATAATCGAAATCGATAATGAAAATAGTATAATTAAATGTCTTAGAATTTAT GTTATGAAAATAATATTTAGAAAAAAAAAATCAAAAATTCCAATAATTTCTACCTGAAAAAATCT AACAATAAGGAATCTGTAAAACAATAAACTGAAATTTCTAATTTTTTTACGAAAACTTTGACAAA ATTACTGAAAATCAGTAAAACAATGCTCCAAACTTGGGAAAAAAAATTGAAGAAATTAGAATTAT TTTGGATTTTCTAAACAACTCGAAAATTGCACAAAACTAGAGAAA Found at i:602008 original size:13 final size:13 Alignment explanation
Indices: 601987--602016 Score: 39 Period size: 13 Copynumber: 2.3 Consensus size: 13 601977 ACTTTTTTTA * 601987 CAAAATTTCATCC 1 CAAAATTTCAGCC * * 602000 CAAATTTTCTGCC 1 CAAAATTTCAGCC 602013 CAAA 1 CAAA 602017 CTCACCCCGT Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.37, C:0.30, G:0.03, T:0.30 Consensus pattern (13 bp): CAAAATTTCAGCC Left flanking sequence: Indices 601487 -- 601986 GACTTTGTCACGAGGGTATGTTGCTTGCAGAGCACATACACACATTATATATGCATATATTCCGT GAAAAAGTGTCCATTTTACATGGCGAATGCACCTGCACCAAGAAATTTGATAAGCGGGTGAATTT GGAACATTTTGGCTTGTAACTCAAAAAGGGGCGGAGCTAGGAAAAACTGTCAACTGAAAAAATGT TGGAAATTTTATTTTCTACAAAATCAAATTTATAAAATATTTTTGAAACTCTGGAAATCTAGATT TTCAGGACTTTTTCTCTACTCAACGCAAAGCTTCGGGGGTTAAACTCGTTAACTTTGGCCTATAA CTTAAAAAGGGGGCGGAGCCAACAATAAACAGTCAAGTGGCAAAATATTCGGCGCATAGTTTTCT ATTTGTTTTTCAAAACTTTTATCAAAACTTTTATTTAATAAAAACCTAACATTTAATTATTCTGG GGGCTTTGGAAAATTTTTTTAAAATTTTGTTCGAAACTTTTTTTA Right flanking sequence: Indices 602017 -- 602516 CTCACCCCGTCATAGGTATAAAGACACGTTGAACATGTCAAAAATGTTTCCGAAAAGTCGTCCAC ATTGATATTCACAGTTTCTACTAGTGATGTGCTAGTAAACATTACCTGAAAAATTGAAATTTTTA GAGGGAGAAAAAACAGAAAAATATTGGAAAATTACAAAAACTTTGAAAAATAATCGAAATCGATA ATGAAAATAGTATAATTAAATGTCTTAGAATTTATGTTATGAAAATAATATTTAGAAAAAAAAAA TCAAAAATTCCAATAATTTCTACCTGAAAAAATCTAACAATAAGGAATCTGTAAAACAATAAACT GAAATTTCTAATTTTTTTACGAAAACTTTGACAAAATTACTGAAAATCAGTAAAACAATGCTCCA AACTTGGGAAAAAAAATTGAAGAAATTAGAATTATTTTGGATTTTCTAAACAACTCGAAAATTGC ACAAAACTAGAGAAATATTCAAAAAATTGATTTTTCTGATTGAAA Found at i:602604 original size:11 final size:11 Alignment explanation
Indices: 602587--602613 Score: 47 Period size: 11 Copynumber: 2.5 Consensus size: 11 602577 ATTTGCTTCT 602587 AAAAATAATGA 1 AAAAATAATGA * 602598 GAAAATAATGA 1 AAAAATAATGA 602609 AAAAA 1 AAAAA 602614 ACTTCAAACA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15 Consensus pattern (11 bp): AAAAATAATGA Left flanking sequence: Indices 602087 -- 602586 TATTCACAGTTTCTACTAGTGATGTGCTAGTAAACATTACCTGAAAAATTGAAATTTTTAGAGGG AGAAAAAACAGAAAAATATTGGAAAATTACAAAAACTTTGAAAAATAATCGAAATCGATAATGAA AATAGTATAATTAAATGTCTTAGAATTTATGTTATGAAAATAATATTTAGAAAAAAAAAATCAAA AATTCCAATAATTTCTACCTGAAAAAATCTAACAATAAGGAATCTGTAAAACAATAAACTGAAAT TTCTAATTTTTTTACGAAAACTTTGACAAAATTACTGAAAATCAGTAAAACAATGCTCCAAACTT GGGAAAAAAAATTGAAGAAATTAGAATTATTTTGGATTTTCTAAACAACTCGAAAATTGCACAAA ACTAGAGAAATATTCAAAAAATTGATTTTTCTGATTGAAAAATCCTGTTAAATATGATTTTGGCA CTGGAAATTCTGCAAAAATGTCCGAAAATCAATAAATTTGCTTCT Right flanking sequence: Indices 602614 -- 603113 ACTTCAAACAAAAATTTTAAATTTCAAAAAAAATCTGAGAAAACTTATTAACAATTATATAATTT TAAAGTTTTTAAATATTGAAAATTTTAAATTTTCTATTGAAAAAAAAAGTGAAACATCTCTAAAA ACCATGGCTTTTTAGAGATGTTTCAAACTTGCCAAAAAAAATTAGGAAAATTTTTTTTTCGATTT TTTGAAACTGAGAAAATTTACAGAACTAGGGGAAAATACTACAAATCAACTGTTTTAACTAAAAA TTTTTATAAATTCGAATTTTAAGCTAAACCACATCAAAAACAAATTCCAAAAATTAATATATTTG CTCCAAAATAAATTTGAAAAAAAATTTCATTTCCGAAAAAAACAGGGAAATCTTATAGAAAATTC TACAATTTAAATCTTCTAAACCAAAAAATCTTGTAAAATTCAAATTTTCAACCGAAAACCATCTA AGACCTCTCCCAAAATCAATAAAAATCGGTTTTAAAAGTCCATTA Found at