TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:13378676 original size:11 final size:11 Alignment explanation
Indices: 13378653--13378680 Score: 35 Period size: 11 Copynumber: 2.6 Consensus size: 11 13378643 AAAATTCAAT 13378653 TTTTCA-CTAA 1 TTTTCAGCTAA * 13378663 TTTTCAGCTCA 1 TTTTCAGCTAA * 13378674 TTTACAG 1 TTTTCAG 13378681 GCAAATTATG Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 10 6 0.40 11 9 0.60 ACGTcount: A:0.25, C:0.21, G:0.07, T:0.46 Consensus pattern (11 bp): TTTTCAGCTAA Left flanking sequence: Indices 13378153 -- 13378652 ATCAGTAAAATTTAGTGTTTTTCGCCGGAAAAAAATACTAATAATTTCAAGAAAAAAGTCAAAAA GAAATTTTTTTTTTTGGAAAAACACGAATTTCCATTGATTTTCGTCATTTTTTTGACTTTTTTCT TGAAATTATTAGTATTTTTTTCCGGTAAAACACTAAATTTTACTGGAAATTTCGATTTTTCCAGT AAAATTTTTAGCTTTTTTCGGTGAAGCTCATTATTTTTTCTTGGCATTTTTGGAAAAATTGAAGA AAATCAATTTTTTTGTAATTTTGAGTTTTATTGTAAATATGAAATTCTCGACGTAAATTTTCTCA AAAATTTCAAAAAATTGGATTTTTTTCCAATTTTTATCAGAAATTTGATCTCCAAATTATTTAAT TTATTGAAATTGCCAGAGAAAATTGTGAAGTTTCAATTTTTTCAGATTTCCACGAATTCTGATTT TTTTGAAACAATTAATTCTCGAAAAAAAATCAGGAAAAATTCAAT Right flanking sequence: Indices 13378681 -- 13379180 GCAAATTATGGTTGTTTTAAATTTTTTTTTGTACTTTTAGGAAAAAAATGGTGGTCTTAAATTTA AAAAATTTGACAAAAAATCGATTTTTAAAAATTTTAGCCTGTAAATTCTAATTTTTCGTGAAATT TGAGAGAAAATTCAACGTTTTAAACGCTTTTTTCTAGACGTTTTTTCTGAAATTTTTTTCCAAAA AATAAAAAAAAATCATAAAATTCCGGAAAAAAATTTTTTTTTGGAAAAAAACGAATTTCCATTGA TTTTCGTCATTTTTTTTTCAAATTTCCCACCAAAAAAACCGTGATTTATTGGATTTTAATCGGAT TTTTTCCAATTTTTCAGAATATCCGTCTTCTTCAAGCTCCGACAACAACAACAAGAGCCGGAGCC CGAGCCGGAGCCGCCTCAACCACCACCACAAGAGAGCACAATTCAAGTGACATCAGTCAAGAGTA CGAGGCCCGATACAGGAGATCCAGGAGATTCAGAAGTAGTCACAA Found at i:13378866 original size:12 final size:13 Alignment explanation
Indices: 13378838--13378868 Score: 41 Period size: 12 Copynumber: 2.5 Consensus size: 13 13378828 TTTTAAACGC ** 13378838 TTTTTTCTAGACG 1 TTTTTTCTAGAAA 13378851 TTTTTTCT-GAAA 1 TTTTTTCTAGAAA 13378863 TTTTTT 1 TTTTTT 13378869 TCCAAAAAAT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 12 8 0.50 13 8 0.50 ACGTcount: A:0.16, C:0.10, G:0.10, T:0.65 Consensus pattern (13 bp): TTTTTTCTAGAAA Left flanking sequence: Indices 13378338 -- 13378837 TTTTTCCAGTAAAATTTTTAGCTTTTTTCGGTGAAGCTCATTATTTTTTCTTGGCATTTTTGGAA AAATTGAAGAAAATCAATTTTTTTGTAATTTTGAGTTTTATTGTAAATATGAAATTCTCGACGTA AATTTTCTCAAAAATTTCAAAAAATTGGATTTTTTTCCAATTTTTATCAGAAATTTGATCTCCAA ATTATTTAATTTATTGAAATTGCCAGAGAAAATTGTGAAGTTTCAATTTTTTCAGATTTCCACGA ATTCTGATTTTTTTGAAACAATTAATTCTCGAAAAAAAATCAGGAAAAATTCAATTTTTCACTAA TTTTCAGCTCATTTACAGGCAAATTATGGTTGTTTTAAATTTTTTTTTGTACTTTTAGGAAAAAA ATGGTGGTCTTAAATTTAAAAAATTTGACAAAAAATCGATTTTTAAAAATTTTAGCCTGTAAATT CTAATTTTTCGTGAAATTTGAGAGAAAATTCAACGTTTTAAACGC Right flanking sequence: Indices 13378869 -- 13379368 TCCAAAAAATAAAAAAAAATCATAAAATTCCGGAAAAAAATTTTTTTTTGGAAAAAAACGAATTT CCATTGATTTTCGTCATTTTTTTTTCAAATTTCCCACCAAAAAAACCGTGATTTATTGGATTTTA ATCGGATTTTTTCCAATTTTTCAGAATATCCGTCTTCTTCAAGCTCCGACAACAACAACAAGAGC CGGAGCCCGAGCCGGAGCCGCCTCAACCACCACCACAAGAGAGCACAATTCAAGTGACATCAGTC AAGAGTACGAGGCCCGATACAGGAGATCCAGGAGATTCAGAAGTAGTCACAACAGATTCCACGGA AAGTATTATAATAACTCGAAAAAACGGGGTTACAATTGTCCGAAAAACGTCGAATTCACTGCTTC TTCCCGACGAGAAATATGATCAAATACGCCAACTTTCGATCGATGATTTTGAGAATAAGGAGAAG AAGCAACAAGTACCGCCGACACCGATGAATACACCGCCTGCGAGT Found at i:13380026 original size:19 final size:20 Alignment explanation
Indices: 13380004--13380069 Score: 74 Period size: 21 Copynumber: 3.3 Consensus size: 20 13379994 CAAAAAACAT * 13380004 ATTTTT-CTGAAATTATAGA 1 ATTTTTCCTGAAATTTTAGA * * * 13380023 ATTTTTCCATGAAAATTTTGT 1 ATTTTTCC-TGAAATTTTAGA * 13380044 ATTTTTCCTGAAATTTTCGA 1 ATTTTTCCTGAAATTTTAGA * 13380064 TTTTTT 1 ATTTTT 13380070 TTTCTAGTAA Statistics Matches: 37, Mismatches: 8, Indels: 3 0.77 0.17 0.06 Matches are distributed among these distances: 19 6 0.16 20 15 0.41 21 16 0.43 ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55 Consensus pattern (20 bp): ATTTTTCCTGAAATTTTAGA Left flanking sequence: Indices 13379504 -- 13380003 AAATCACGAAAAAACGTCGAATTTTTGGCAACAATTTGAGAAAAAAATTCGGAAGAATTGAAGTT TTACCAAAATTTTTGTTATTTTTTTTAGTCTGACGCACCAAATTGAAATTTTTTGTATGTGTAAA AATAGTTTGCACATGGTTACATCATTTTTGTATGAAAAATCAAGAATTTTCGACAAAAAAATTTT TTTGGACGGATTTTTTTCCAAACTTTTCTTGTTTTCTAATAATGTATTCTAAACAAAGCAATATC CACACACAAACCTCAGTTGAAACCTGAAAAGAAGCGAGATCTGAAAAATGCCTGAAAAAATTGGC TCCGAGTTAGGGCAATTCGGACGGCCAAAAAATTTTGTGACTATTGTCAAATGAAAGATCATGGT TGATAACATAAATTCCCAAAGTTTCATAAAAATCGATTTGCAGCGAACAAAGTTATGATTTTTGA CCCGGAACTTATTTGGAGACCTAATAATTTTTCTGCAAAAAACAT Right flanking sequence: Indices 13380070 -- 13380569 TTTCTAGTAAAATTCTTATTTTTTGGAATTTTCGTTTAAAAATTTGAAAAAAAATCGATGAAAGG GAACAAAATGCCTCTTTTTTTCCAGTTTTTTAAAAACTTATTTTCGTCCGTAAAAATTGCTCGTA AAAATTTTTTTTTTCCTGATTTTGGAACCAAATTTCACCGTTTTTTGGCAATTTTTCATTAAAAA ATGAAGATTTTTCGACTAATTTTCAGCTTAAAAGCTAATTTTCGAGAAATTTTTATTTGAAATTT TTTTTTTGATTTTCAAAAAAAAAAGGATTGAAATTTTGAAAAAATCGAATTTTTTAGACAAATTT CAAAAAAAGAACTTATATGGAGACCTAATAAAAAATTCCAGATCCAATCCACCACGTCTGAAACG ACGCCAGGCCACTCGTCGAGCCGTAAACCATCAAAAGAAGATAGTAGTCCATTTGATGCTTCTTC AGCCACCCCAGCCCCATCTCAACTGGAAACCCCCCAGCAGCAGAA Found at i:13380338 original size:14 final size:13 Alignment explanation
Indices: 13380310--13380335 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 13380300 TAATTTTCGA 13380310 GAAATTTTTATTT 1 GAAATTTTTATTT * 13380323 GAAATTTTTTTTT 1 GAAATTTTTATTT 13380336 TGATTTTCAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65 Consensus pattern (13 bp): GAAATTTTTATTT Left flanking sequence: Indices 13379810 -- 13380309 AATGCCTGAAAAAATTGGCTCCGAGTTAGGGCAATTCGGACGGCCAAAAAATTTTGTGACTATTG TCAAATGAAAGATCATGGTTGATAACATAAATTCCCAAAGTTTCATAAAAATCGATTTGCAGCGA ACAAAGTTATGATTTTTGACCCGGAACTTATTTGGAGACCTAATAATTTTTCTGCAAAAAACATA TTTTTCTGAAATTATAGAATTTTTCCATGAAAATTTTGTATTTTTCCTGAAATTTTCGATTTTTT TTTCTAGTAAAATTCTTATTTTTTGGAATTTTCGTTTAAAAATTTGAAAAAAAATCGATGAAAGG GAACAAAATGCCTCTTTTTTTCCAGTTTTTTAAAAACTTATTTTCGTCCGTAAAAATTGCTCGTA AAAATTTTTTTTTTCCTGATTTTGGAACCAAATTTCACCGTTTTTTGGCAATTTTTCATTAAAAA ATGAAGATTTTTCGACTAATTTTCAGCTTAAAAGCTAATTTTCGA Right flanking sequence: Indices 13380336 -- 13380835 TGATTTTCAAAAAAAAAAGGATTGAAATTTTGAAAAAATCGAATTTTTTAGACAAATTTCAAAAA AAGAACTTATATGGAGACCTAATAAAAAATTCCAGATCCAATCCACCACGTCTGAAACGACGCCA GGCCACTCGTCGAGCCGTAAACCATCAAAAGAAGATAGTAGTCCATTTGATGCTTCTTCAGCCAC CCCAGCCCCATCTCAACTGGAAACCCCCCAGCAGCAGAAACCCACCACCACCCGTCACTTCCAAG TCGAGCCAGTTGTGCTCAGTGAGCCAAGTACACCGGCTCCGGTGGCTCCGGCTCCGTCGATTGAG ACGCTGACCTCTACTTCACCACCAGTGACACAACAACTTGCTCCGTCGCTCAGTGAGCCCACGTT TCAAGTTATTCAGGTAATTTTGAGATATTATGAGAACAAAAAAAAGCAGGATTTTGTCTGCGAAA AATCGAGAAATTGGATTTAAAAAAAGCACCGAAAATACGAATTTT Found at i:13380947 original size:43 final size:43 Alignment explanation
Indices: 13380899--13380986 Score: 99 Period size: 43 Copynumber: 2.0 Consensus size: 43 13380889 TGATATTTTC * * * * * * 13380899 CGGCAAATTGGCAAATTGCCAAAATTTAAGATTTTAGGCAAAT 1 CGGCAAATCGGAAAATTGCCAAAAATCAAAATTTCAGGCAAAT * ** * * 13380942 CGGCAAGTCGGAAGTTTGCCGAAAATCAAAATTTCCGGCAAAT 1 CGGCAAATCGGAAAATTGCCAAAAATCAAAATTTCAGGCAAAT 13380985 CG 1 CG 13380987 AAAAACCGAC Statistics Matches: 34, Mismatches: 11, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 43 34 1.00 ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24 Consensus pattern (43 bp): CGGCAAATCGGAAAATTGCCAAAAATCAAAATTTCAGGCAAAT Left flanking sequence: Indices 13380399 -- 13380898 AAAAGAACTTATATGGAGACCTAATAAAAAATTCCAGATCCAATCCACCACGTCTGAAACGACGC CAGGCCACTCGTCGAGCCGTAAACCATCAAAAGAAGATAGTAGTCCATTTGATGCTTCTTCAGCC ACCCCAGCCCCATCTCAACTGGAAACCCCCCAGCAGCAGAAACCCACCACCACCCGTCACTTCCA AGTCGAGCCAGTTGTGCTCAGTGAGCCAAGTACACCGGCTCCGGTGGCTCCGGCTCCGTCGATTG AGACGCTGACCTCTACTTCACCACCAGTGACACAACAACTTGCTCCGTCGCTCAGTGAGCCCACG TTTCAAGTTATTCAGGTAATTTTGAGATATTATGAGAACAAAAAAAAGCAGGATTTTGTCTGCGA AAAATCGAGAAATTGGATTTAAAAAAAGCACCGAAAATACGAATTTTTCAGTCAAATTTGTTGTA AATTTGCGAAAAATGGCATTTTTGAGCATAATTTGTGATATTTTC Right flanking sequence: Indices 13380987 -- 13381486 AAAAACCGACAATTGTCGGAATTGAAAAGTTCCGGAAAATTGGCGAATTGTCAGAATTTAAGATT TTGGGCAAATCGACAAACCGACAATTTGCCAAAAGTCAACCTTTCCGGCAAATCGGCAAACCGGC GAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTT CCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCG GAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAAT CGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAA ATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACC GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGC Found at i:13381124 original size:43 final size:43 Alignment explanation
Indices: 13381055--13381237 Score: 177 Period size: 43 Copynumber: 4.3 Consensus size: 43 13381045 TAAGATTTTG * * * * ** 13381055 GGCAAATCGACAAACCGACAATTTGCCAAAAGTCAACCTTTCC 1 GGCAAATCGGCAAACCGGCAAATTGCCAAAAATCAAAATTTCC * ** * * * 13381098 GGCAAATCGGCAAACCGGCGAATTGCCGGAATTGAAAATTTTC 1 GGCAAATCGGCAAACCGGCAAATTGCCAAAAATCAAAATTTCC * * * * * * * 13381141 GGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCC 1 GGCAAATCGGCAAACCGGCAAATTGCCAAAAATCAAAATTTCC * * * * * * 13381184 GGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCC 1 GGCAAATCGGCAAACCGGCAAATTGCCAAAAATCAAAATTTCC * * 13381227 GGAAAATTGGC 1 GGCAAATCGGC 13381238 GAATTGCCGG Statistics Matches: 102, Mismatches: 38, Indels: 0 0.73 0.27 0.00 Matches are distributed among these distances: 43 102 1.00 ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21 Consensus pattern (43 bp): GGCAAATCGGCAAACCGGCAAATTGCCAAAAATCAAAATTTCC Left flanking sequence: Indices 13380555 -- 13381054 CCCCCAGCAGCAGAAACCCACCACCACCCGTCACTTCCAAGTCGAGCCAGTTGTGCTCAGTGAGC CAAGTACACCGGCTCCGGTGGCTCCGGCTCCGTCGATTGAGACGCTGACCTCTACTTCACCACCA GTGACACAACAACTTGCTCCGTCGCTCAGTGAGCCCACGTTTCAAGTTATTCAGGTAATTTTGAG ATATTATGAGAACAAAAAAAAGCAGGATTTTGTCTGCGAAAAATCGAGAAATTGGATTTAAAAAA AGCACCGAAAATACGAATTTTTCAGTCAAATTTGTTGTAAATTTGCGAAAAATGGCATTTTTGAG CATAATTTGTGATATTTTCCGGCAAATTGGCAAATTGCCAAAATTTAAGATTTTAGGCAAATCGG CAAGTCGGAAGTTTGCCGAAAATCAAAATTTCCGGCAAATCGAAAAACCGACAATTGTCGGAATT GAAAAGTTCCGGAAAATTGGCGAATTGTCAGAATTTAAGATTTTG Right flanking sequence: Indices 13381238 -- 13381737 GAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTT CCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCG GAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAAT CGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAA ATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACC GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGC AAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTG CCGGAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGA Found at i:13381183 original size:86 final size:86 Alignment explanation
Indices: 13381028--13381241 Score: 288 Period size: 86 Copynumber: 2.5 Consensus size: 86 13381018 CCGGAAAATT * * * * * * * * * * * ** 13381028 GGCGAATTGTCAGAATTTAAGATTTTGGGCAAATCGACAAACCGACAATTTGCCAAAAGTCAACC 1 GGCGAATTGCCGGAATTAAAAATTTTCGGAAAATTGGCGAATCGACAATTTGCCAAAAATCAAAA 13381093 TTTCCGGCAAATCGGCAAACC 66 TTTCCGGCAAATCGGCAAACC * * * 13381114 GGCGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAA 1 GGCGAATTGCCGGAATTAAAAATTTTCGGAAAATTGGCGAATCGACAATTTGCCAAAAATCAAAA * 13381179 TTTCCGGTAAATCGGCAAACC 66 TTTCCGGCAAATCGGCAAACC * * * 13381200 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAAT 1 GGCGAATTGCCGGAATTAAAAATTTTCGGAAAATTGGCGAAT 13381242 TGCCGGAATT Statistics Matches: 108, Mismatches: 20, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 86 108 1.00 ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23 Consensus pattern (86 bp): GGCGAATTGCCGGAATTAAAAATTTTCGGAAAATTGGCGAATCGACAATTTGCCAAAAATCAAAA TTTCCGGCAAATCGGCAAACC Left flanking sequence: Indices 13380528 -- 13381027 CACCCCAGCCCCATCTCAACTGGAAACCCCCCAGCAGCAGAAACCCACCACCACCCGTCACTTCC AAGTCGAGCCAGTTGTGCTCAGTGAGCCAAGTACACCGGCTCCGGTGGCTCCGGCTCCGTCGATT GAGACGCTGACCTCTACTTCACCACCAGTGACACAACAACTTGCTCCGTCGCTCAGTGAGCCCAC GTTTCAAGTTATTCAGGTAATTTTGAGATATTATGAGAACAAAAAAAAGCAGGATTTTGTCTGCG AAAAATCGAGAAATTGGATTTAAAAAAAGCACCGAAAATACGAATTTTTCAGTCAAATTTGTTGT AAATTTGCGAAAAATGGCATTTTTGAGCATAATTTGTGATATTTTCCGGCAAATTGGCAAATTGC CAAAATTTAAGATTTTAGGCAAATCGGCAAGTCGGAAGTTTGCCGAAAATCAAAATTTCCGGCAA ATCGAAAAACCGACAATTGTCGGAATTGAAAAGTTCCGGAAAATT Right flanking sequence: Indices 13381242 -- 13381741 TGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGG TAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAAT TGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGC AAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTT TGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCG AATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAAT TGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGG AATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAAT Found at i:13381239 original size:35 final size:35 Alignment explanation
Indices: 13381200--13381276 Score: 126 Period size: 35 Copynumber: 2.2 Consensus size: 35 13381190 TCGGCAAACC 13381200 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT * * * * 13381235 GGCGAATTGCCGGAATTGAAAATTTTCGGAAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 13381270 GGCGAAT 1 GGCGAAT 13381277 CGTCAATTTG Statistics Matches: 38, Mismatches: 4, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 35 38 1.00 ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25 Consensus pattern (35 bp): GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT Left flanking sequence: Indices 13380700 -- 13381199 GCTCCGTCGCTCAGTGAGCCCACGTTTCAAGTTATTCAGGTAATTTTGAGATATTATGAGAACAA AAAAAAGCAGGATTTTGTCTGCGAAAAATCGAGAAATTGGATTTAAAAAAAGCACCGAAAATACG AATTTTTCAGTCAAATTTGTTGTAAATTTGCGAAAAATGGCATTTTTGAGCATAATTTGTGATAT TTTCCGGCAAATTGGCAAATTGCCAAAATTTAAGATTTTAGGCAAATCGGCAAGTCGGAAGTTTG CCGAAAATCAAAATTTCCGGCAAATCGAAAAACCGACAATTGTCGGAATTGAAAAGTTCCGGAAA ATTGGCGAATTGTCAGAATTTAAGATTTTGGGCAAATCGACAAACCGACAATTTGCCAAAAGTCA ACCTTTCCGGCAAATCGGCAAACCGGCGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAA TCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACC Right flanking sequence: Indices 13381277 -- 13381776 CGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAA AGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTT GCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGA AAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAAT CAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCG AATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC CGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGG AATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAA Found at i:13381360 original size:35 final size:35 Alignment explanation
Indices: 13381321--13381397 Score: 112 Period size: 35 Copynumber: 2.2 Consensus size: 35 13381311 TCGGCAAACC 13381321 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT * * * ** * 13381356 GGCGAATTGCCGGAATTGAAAATTTTGGGCAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 13381391 GGCGAAT 1 GGCGAAT 13381398 CGTCAATTTG Statistics Matches: 36, Mismatches: 6, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 35 36 1.00 ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25 Consensus pattern (35 bp): GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT Left flanking sequence: Indices 13380821 -- 13381320 GAAAATACGAATTTTTCAGTCAAATTTGTTGTAAATTTGCGAAAAATGGCATTTTTGAGCATAAT TTGTGATATTTTCCGGCAAATTGGCAAATTGCCAAAATTTAAGATTTTAGGCAAATCGGCAAGTC GGAAGTTTGCCGAAAATCAAAATTTCCGGCAAATCGAAAAACCGACAATTGTCGGAATTGAAAAG TTCCGGAAAATTGGCGAATTGTCAGAATTTAAGATTTTGGGCAAATCGACAAACCGACAATTTGC CAAAAGTCAACCTTTCCGGCAAATCGGCAAACCGGCGAATTGCCGGAATTGAAAATTTTCGGAAA ATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCC GAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAA TCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACC Right flanking sequence: Indices 13381398 -- 13381897 CGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAA AGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAGATTGGCGAATCGTCAATTT GCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGA AAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAAT CAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG AATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC CGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAA TTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAAT Found at i:13381423 original size:43 final size:43 Alignment explanation
Indices: 13381352--13381483 Score: 124 Period size: 43 Copynumber: 3.1 Consensus size: 43 13381342 AGTTCCGGAA * * ** * * ** * 13381352 AATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCG 1 AATCGGCAAATTGCCAAAAATAAAAATTTCCGGAAAATTGGCG * * * * * * 13381395 AATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCA 1 AATCGGCAAATTGCCAAAAATAAAAATTTCCGGAAAATTGGCG * * * * * 13381438 AACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCG 1 AATCGGCAAATTGCCAAAAATAAAAATTTCCGGAAAATTGGCG 13381481 AAT 1 AAT 13381484 TGCCGGAATT Statistics Matches: 64, Mismatches: 25, Indels: 0 0.72 0.28 0.00 Matches are distributed among these distances: 43 64 1.00 ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24 Consensus pattern (43 bp): AATCGGCAAATTGCCAAAAATAAAAATTTCCGGAAAATTGGCG Left flanking sequence: Indices 13380852 -- 13381351 TAAATTTGCGAAAAATGGCATTTTTGAGCATAATTTGTGATATTTTCCGGCAAATTGGCAAATTG CCAAAATTTAAGATTTTAGGCAAATCGGCAAGTCGGAAGTTTGCCGAAAATCAAAATTTCCGGCA AATCGAAAAACCGACAATTGTCGGAATTGAAAAGTTCCGGAAAATTGGCGAATTGTCAGAATTTA AGATTTTGGGCAAATCGACAAACCGACAATTTGCCAAAAGTCAACCTTTCCGGCAAATCGGCAAA CCGGCGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAA AATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAAT TGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGG TAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAA Right flanking sequence: Indices 13381484 -- 13381983 TGCCGGAATTGAAAATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGG TAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAAT TGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGC AAACCGACAAATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTT TGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACA AATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTC CGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGCAAATTGGCAAACTGCCGG AATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAA Found at i:13381481 original size:35 final size:35 Alignment explanation
Indices: 13381442--13381518 Score: 105 Period size: 35 Copynumber: 2.2 Consensus size: 35 13381432 TCGGCAAACC 13381442 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT * * * ** * * 13381477 GGCGAATTGCCGGAATTGAAAATTTTGGGCAGATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 13381512 GGCGAAT 1 GGCGAAT 13381519 CGTCAATTTG Statistics Matches: 35, Mismatches: 7, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 35 35 1.00 ACGTcount: A:0.34, C:0.13, G:0.29, T:0.25 Consensus pattern (35 bp): GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT Left flanking sequence: Indices 13380942 -- 13381441 CGGCAAGTCGGAAGTTTGCCGAAAATCAAAATTTCCGGCAAATCGAAAAACCGACAATTGTCGGA ATTGAAAAGTTCCGGAAAATTGGCGAATTGTCAGAATTTAAGATTTTGGGCAAATCGACAAACCG ACAATTTGCCAAAAGTCAACCTTTCCGGCAAATCGGCAAACCGGCGAATTGCCGGAATTGAAAAT TTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGG CGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTCGGAAA ATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCC GAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAA TCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACC Right flanking sequence: Indices 13381519 -- 13382018 CGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAA AGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTT GCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAAAGTTCCGGA AAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAAT CAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCG AATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTA AAAAGTTCCGGCAAATTGGCAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAA TTTGCCAAAAAACAAAATTTCCGGCAAATCGGCAAACCGACGAAT Found at i:13381602 original size:35 final size:35 Alignment explanation
Indices: 13381563--13381639 Score: 112 Period size: 35 Copynumber: 2.2 Consensus size: 35 13381553 TCGGCAAACC 13381563 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT * * * ** * 13381598 GGCGAATTGCCGGAATTGAAAATTTTGGGCAAATT 1 GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT 13381633 GGCGAAT 1 GGCGAAT 13381640 CGTCAATTTG Statistics Matches: 36, Mismatches: 6, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 35 36 1.00 ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25 Consensus pattern (35 bp): GGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATT Left flanking sequence: Indices 13381063 -- 13381562 GACAAACCGACAATTTGCCAAAAGTCAACCTTTCCGGCAAATCGGCAAACCGGCGAATTGCCGGA ATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCG GCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAAT TTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGG CGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAA ATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCC GAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAGATTGGCGAA TCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACC Right flanking sequence: Indices 13381640 -- 13382139 CGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAA AGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTT GCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGC AAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTG CCGAAATTAAAAAGTTCCGGCAAATTGGCAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCG AATCGTCAATTTGCCAAAAAACAAAATTTCCGGCAAATCGGCAAACCGACGAATTGCCGGAATTG AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCTGCAAATCGGCAA AATGACCATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAA Found at i:13381665 original size:43 final size:43 Alignment explanation
Indices: 13381616--13381725 Score: 122 Period size: 43 Copynumber: 2.6 Consensus size: 43 13381606 GCCGGAATTG ** * * * * 13381616 AAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATC 1 AAAATTTCCGGAAAATTGGCGAATCGACAAATTGCCAAAAATA * * * * ** * 13381659 AAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTA 1 AAAATTTCCGGAAAATTGGCGAATCGACAAATTGCCAAAAATA * 13381702 AAAAGTTCCGGAAAATTGGCGAAT 1 AAAATTTCCGGAAAATTGGCGAAT 13381726 TGCCGGAATT Statistics Matches: 50, Mismatches: 17, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 43 50 1.00 ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24 Consensus pattern (43 bp): AAAATTTCCGGAAAATTGGCGAATCGACAAATTGCCAAAAATA Left flanking sequence: Indices 13381116 -- 13381615 CGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATT TCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCC GGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAA TCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAA AATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAAC CGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGG CAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATT GCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTG Right flanking sequence: Indices 13381726 -- 13382225 TGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGG TAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTT GTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGC AAATTGGCAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAAA CAAAATTTCCGGCAAATCGGCAAACCGACGAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCG AATCGTCAATTTGTCAAAAATCAAAATTTCCTGCAAATCGGCAAAATGACCATAAAACGATTTTC AAAAATATGAGAATCTTGAAAAAAAACTTTTTTTTTTCGACTTTTTTCGGACTTTTTTCGAAGTT TTTCTTGTAAAAATTTCGAAAATTCCAGAATTTTTCACACTGAAT Found at i:13381734 original size:35 final size:35 Alignment explanation
Indices: 13381688--13381760 Score: 111 Period size: 35 Copynumber: 2.1 Consensus size: 35 13381678 CAAACCGACA 13381688 AATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG 1 AATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG * * ** * 13381723 AATTGCCGGAATTGAAAATTTTGGGCAAATTGGCG 1 AATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG 13381758 AAT 1 AAT 13381761 CGTCAATTTG Statistics Matches: 33, Mismatches: 5, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 35 33 1.00 ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26 Consensus pattern (35 bp): AATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG Left flanking sequence: Indices 13381188 -- 13381687 AATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTG AAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAA ACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTG GGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAA TTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAGATTG GCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAA TTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGT CAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACA Right flanking sequence: Indices 13381761 -- 13382260 CGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAA ATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACC GGCGAATTGCCGAAATTAAAAAGTTCCGGCAAATTGGCAAACTGCCGGAATTGAAAATTTCCGGC AAATCGGCGAATCGTCAATTTGCCAAAAAACAAAATTTCCGGCAAATCGGCAAACCGACGAATTG CCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCTGCA AATCGGCAAAATGACCATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAAAACTTTTTTTT TTCGACTTTTTTCGGACTTTTTTCGAAGTTTTTCTTGTAAAAATTTCGAAAATTCCAGAATTTTT CACACTGAATTTACAGTAAAAAATATCCAAAAAGCTCAAAATTTT i:13381786 original size:43 final size:43 Alignment explanation
Indices: 13381737--13381932 Score: 224 Period size: 43 Copynumber: 4.6 Consensus size: 43 13381727 GCCGGAATTG ** * * * * 13381737 AAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATC 1 AAAATTTCCGGCAAATCGGCAAACCGTCAAATTGCCAAAAATC * * ** * * 13381780 AAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTG 1 AAAATTTCCGGCAAATCGGCAAACCGTCAAATTGCCAAAAATC * * * * 13381823 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATC 1 AAAATTTCCGGCAAATCGGCAAACCGTCAAATTGCCAAAAATC * * * * * * 13381866 AAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTA 1 AAAATTTCCGGCAAATCGGCAAACCGTCAAATTGCCAAAAATC * * 13381909 AAAAGTTCCGGCAAATTGGCAAAC 1 AAAATTTCCGGCAAATCGGCAAAC 13381933 TGCCGGAATT Statistics Matches: 118, Mismatches: 35, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 43 118 1.00 ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23 Consensus pattern (43 bp): AAAATTTCCGGCAAATCGGCAAACCGTCAAATTGCCAAAAATC Left flanking sequence: Indices 13381237 -- 13381736 CGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGTCAAAAATCAAAATT TCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCC GGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAA TCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAA AATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAAC CGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGG CAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATT GCCGGAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTG Right flanking sequence: Indices 13381933 -- 13382432 TGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAAACAAAATTTCCGG CAAATCGGCAAACCGACGAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTT GTCAAAAATCAAAATTTCCTGCAAATCGGCAAAATGACCATAAAACGATTTTCAAAAATATGAGA ATCTTGAAAAAAAACTTTTTTTTTTCGACTTTTTTCGGACTTTTTTCGAAGTTTTTCTTGTAAAA ATTTCGAAAATTCCAGAATTTTTCACACTGAATTTACAGTAAAAAATATCCAAAAAGCTCAAAAT TTTTGAAAAGTTGGACTGAAAATTGTATTTTTTTAAAGAGTTTTTTGTGCTAAAATATACAAAAC TACACAATTTTTTAAATTATTTTCCATTGAAAAATGCTCTGAAAAATCTGAATTTTCAGACCGAA GAGAGCAAAAACATGTCGATGGATTCGGTGAAGAACGTCGTTGAT Found at i:13381836 original size:86 final size:86 Alignment explanation
Indices: 13381723--13381928 Score: 349 Period size: 86 Copynumber: 2.4 Consensus size: 86 13381713 AAAATTGGCG ** 13381723 AATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC 1 AATTGCCGGAATTGAAAATTTCCGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC 13381788 CGGTAAATCGGCAAACCGACA 66 CGGTAAATCGGCAAACCGACA * * 13381809 AATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTC 1 AATTGCCGGAATTGAAAATTTCCGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC * * 13381874 CGGTAAATCGGCAAACCGGCG 66 CGGTAAATCGGCAAACCGACA * * * 13381895 AATTGCCGAAATTAAAAAGTTCCGGCAAATTGGC 1 AATTGCCGGAATTGAAAATTTCCGGCAAATTGGC 13381929 AAACTGCCGG Statistics Matches: 110, Mismatches: 10, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 86 110 1.00 ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24 Consensus pattern (86 bp): AATTGCCGGAATTGAAAATTTCCGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTC CGGTAAATCGGCAAACCGACA Left flanking sequence: Indices 13381223 -- 13381722 TTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTCGGAAAATTGGCGAATCGTCAATTTGT CAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAA ATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCA AAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAA TTGCCGGAATTGAAAATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCG GTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAA TTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGG CAAACCGACAAATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCG Right flanking sequence: Indices 13381929 -- 13382428 AAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAAACAAAATTT CCGGCAAATCGGCAAACCGACGAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCA ATTTGTCAAAAATCAAAATTTCCTGCAAATCGGCAAAATGACCATAAAACGATTTTCAAAAATAT GAGAATCTTGAAAAAAAACTTTTTTTTTTCGACTTTTTTCGGACTTTTTTCGAAGTTTTTCTTGT AAAAATTTCGAAAATTCCAGAATTTTTCACACTGAATTTACAGTAAAAAATATCCAAAAAGCTCA AAATTTTTGAAAAGTTGGACTGAAAATTGTATTTTTTTAAAGAGTTTTTTGTGCTAAAATATACA AAACTACACAATTTTTTAAATTATTTTCCATTGAAAAATGCTCTGAAAAATCTGAATTTTCAGAC CGAAGAGAGCAAAAACATGTCGATGGATTCGGTGAAGAACGTCGT Found at i:13381921 original size:35 final size:35 Alignment explanation
Indices: 13381882--13381967 Score: 123 Period size: 35 Copynumber: 2.5 Consensus size: 35 13381872 TCCGGTAAAT * 13381882 CGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTC 1 CGGCAAATCGGCGAATTGCCGAAATTAAAAAGTTC * * * * * * 13381917 CGGCAAATTGGCAAACTGCCGGAATTGAAAATTTC 1 CGGCAAATCGGCGAATTGCCGAAATTAAAAAGTTC 13381952 CGGCAAATCGGCGAAT 1 CGGCAAATCGGCGAAT 13381968 CGTCAATTTG Statistics Matches: 41, Mismatches: 10, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 35 41 1.00 ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19 Consensus pattern (35 bp): CGGCAAATCGGCGAATTGCCGAAATTAAAAAGTTC Left flanking sequence: Indices 13381382 -- 13381881 GGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGA ATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAGATT GGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAA ATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCG TCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAAAG TTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGC CAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGCAA ATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAAT Right flanking sequence: Indices 13381968 -- 13382467 CGTCAATTTGCCAAAAAACAAAATTTCCGGCAAATCGGCAAACCGACGAATTGCCGGAATTGAAA ATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCTGCAAATCGGCAAAAT GACCATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAAAACTTTTTTTTTTCGACTTTTTT CGGACTTTTTTCGAAGTTTTTCTTGTAAAAATTTCGAAAATTCCAGAATTTTTCACACTGAATTT ACAGTAAAAAATATCCAAAAAGCTCAAAATTTTTGAAAAGTTGGACTGAAAATTGTATTTTTTTA AAGAGTTTTTTGTGCTAAAATATACAAAACTACACAATTTTTTAAATTATTTTCCATTGAAAAAT GCTCTGAAAAATCTGAATTTTCAGACCGAAGAGAGCAAAAACATGTCGATGGATTCGGTGAAGAA CGTCGTTGATGCTGCTGCTCTTTCTGCTCCGGCTCCGGCTCCACT Found at i:13382005 original size:43 final size:43 Alignment explanation
Indices: 13381944--13382092 Score: 214 Period size: 43 Copynumber: 3.5 Consensus size: 43 13381934 GCCGGAATTG * 13381944 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAAAC 1 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAATC * * * * * ** * * 13381987 AAAATTTCCGGCAAATCGGCAAACCGACGAATTGCCGGAATTG 1 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAATC * 13382030 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATC 1 AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAATC * 13382073 AAAATTTCCTGCAAATCGGC 1 AAAATTTCCGGCAAATCGGC 13382093 AAAATGACCA Statistics Matches: 85, Mismatches: 21, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 43 85 1.00 ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22 Consensus pattern (43 bp): AAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAAAAATC Left flanking sequence: Indices 13381444 -- 13381943 CGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAG ATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCC GAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAA TCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAA AAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATT TGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGG CAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATT GCCGAAATTAAAAAGTTCCGGCAAATTGGCAAACTGCCGGAATTG Right flanking sequence: Indices 13382093 -- 13382592 AAAATGACCATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAAAACTTTTTTTTTTCGACT TTTTTCGGACTTTTTTCGAAGTTTTTCTTGTAAAAATTTCGAAAATTCCAGAATTTTTCACACTG AATTTACAGTAAAAAATATCCAAAAAGCTCAAAATTTTTGAAAAGTTGGACTGAAAATTGTATTT TTTTAAAGAGTTTTTTGTGCTAAAATATACAAAACTACACAATTTTTTAAATTATTTTCCATTGA AAAATGCTCTGAAAAATCTGAATTTTCAGACCGAAGAGAGCAAAAACATGTCGATGGATTCGGTG AAGAACGTCGTTGATGCTGCTGCTCTTTCTGCTCCGGCTCCGGCTCCACTGAGCCAATCGGATCG TCTGAATCATGTGGATGAAGTGGAGGGAACAACACCCTCAAATGTCATGATAACTGTGTCGTCGG CGGCCGCGGCGTTGGAGAAGAAGGAGGAGGTTAGCCTCAGAAGCT Found at i:13382008 original size:86 final size:86 Alignment explanation
Indices: 13381917--13382095 Score: 302 Period size: 86 Copynumber: 2.1 Consensus size: 86 13381907 TAAAAAGTTC ** * 13381917 CGGCAAATTGGCAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAA 1 CGGCAAACCGACAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAA 13381982 AAAACAAAATTTCCGGCAAAT 66 AAAACAAAATTTCCGGCAAAT * * * 13382003 CGGCAAACCGACGAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAA 1 CGGCAAACCGACAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAA * * 13382068 AAATCAAAATTTCCTGCAAAT 66 AAAACAAAATTTCCGGCAAAT 13382089 CGGCAAA 1 CGGCAAA 13382096 ATGACCATAA Statistics Matches: 85, Mismatches: 8, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 86 85 1.00 ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21 Consensus pattern (86 bp): CGGCAAACCGACAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGCCAA AAAACAAAATTTCCGGCAAAT Left flanking sequence: Indices 13381417 -- 13381916 AAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGA ATTGCCGGAATTGAAAATTTTGGGCAGATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCC GGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGA ATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCG GCAAACCGACAAATTGCCGGAATTAAAAAGTTCCGGAAAATTGGCGAATTGCCGGAATTGAAAAT TTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGA CAAATTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATT TCCGGTAAATCGGCAAACCGGCGAATTGCCGAAATTAAAAAGTTC Right flanking sequence: Indices 13382096 -- 13382595 ATGACCATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAAAACTTTTTTTTTTCGACTTTT TTCGGACTTTTTTCGAAGTTTTTCTTGTAAAAATTTCGAAAATTCCAGAATTTTTCACACTGAAT TTACAGTAAAAAATATCCAAAAAGCTCAAAATTTTTGAAAAGTTGGACTGAAAATTGTATTTTTT TAAAGAGTTTTTTGTGCTAAAATATACAAAACTACACAATTTTTTAAATTATTTTCCATTGAAAA ATGCTCTGAAAAATCTGAATTTTCAGACCGAAGAGAGCAAAAACATGTCGATGGATTCGGTGAAG AACGTCGTTGATGCTGCTGCTCTTTCTGCTCCGGCTCCGGCTCCACTGAGCCAATCGGATCGTCT GAATCATGTGGATGAAGTGGAGGGAACAACACCCTCAAATGTCATGATAACTGTGTCGTCGGCGG CCGCGGCGTTGGAGAAGAAGGAGGAGGTTAGCCTCAGAAGCTTCC Found at i:13382175 original size:11 final size:11 Alignment explanation
Indices: 13382147--13382183 Score: 53 Period size: 11 Copynumber: 3.5 Consensus size: 11 13382137 AAAAACTTTT 13382147 TTTTTTC-GAC 1 TTTTTTCGGAC 13382157 TTTTTTCGGAC 1 TTTTTTCGGAC * * 13382168 TTTTTTCGAAG 1 TTTTTTCGGAC 13382179 TTTTT 1 TTTTT 13382184 CTTGTAAAAA Statistics Matches: 24, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 10 7 0.29 11 17 0.71 ACGTcount: A:0.11, C:0.14, G:0.14, T:0.62 Consensus pattern (11 bp): TTTTTTCGGAC Left flanking sequence: Indices 13381647 -- 13382146 TTGCCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTAAAAAGTTCCG GAAAATTGGCGAATTGCCGGAATTGAAAATTTTGGGCAAATTGGCGAATCGTCAATTTGCCAAAA ATCAAAATTTCCGGTAAATCGGCAAACCGACAAATTGCCGGAATTGAAAATTTCCGGCAAATCGG CGAATCGTCAATTTGTCAAAAATCAAAATTTCCGGTAAATCGGCAAACCGGCGAATTGCCGAAAT TAAAAAGTTCCGGCAAATTGGCAAACTGCCGGAATTGAAAATTTCCGGCAAATCGGCGAATCGTC AATTTGCCAAAAAACAAAATTTCCGGCAAATCGGCAAACCGACGAATTGCCGGAATTGAAAATTT CCGGCAAATCGGCGAATCGTCAATTTGTCAAAAATCAAAATTTCCTGCAAATCGGCAAAATGACC ATAAAACGATTTTCAAAAATATGAGAATCTTGAAAAAAAACTTTT Right flanking sequence: Indices 13382184 -- 13382683 CTTGTAAAAATTTCGAAAATTCCAGAATTTTTCACACTGAATTTACAGTAAAAAATATCCAAAAA GCTCAAAATTTTTGAAAAGTTGGACTGAAAATTGTATTTTTTTAAAGAGTTTTTTGTGCTAAAAT ATACAAAACTACACAATTTTTTAAATTATTTTCCATTGAAAAATGCTCTGAAAAATCTGAATTTT CAGACCGAAGAGAGCAAAAACATGTCGATGGATTCGGTGAAGAACGTCGTTGATGCTGCTGCTCT TTCTGCTCCGGCTCCGGCTCCACTGAGCCAATCGGATCGTCTGAATCATGTGGATGAAGTGGAGG GAACAACACCCTCAAATGTCATGATAACTGTGTCGTCGGCGGCCGCGGCGTTGGAGAAGAAGGAG GAGGTTAGCCTCAGAAGCTTCCGCCGCGAGCAATTTTTAGTTCGGAAAAATGGGCAAAAAATCGA AATTTCCGGCAGATTTTTCAGCTTAAAAACTGAAATTTTGAGGAA Found at i:13382759 original size:11 final size:11 Alignment explanation
Indices: 13382743--13382766 Score: 41 Period size: 11 Copynumber: 2.2 Consensus size: 11 13382733 TGAAAAGCTG * 13382743 AATTTTCAGAA 1 AATTTTAAGAA 13382754 AATTTTAAGAA 1 AATTTTAAGAA 13382765 AA 1 AA 13382767 AATTAGCAAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.54, C:0.04, G:0.08, T:0.33 Consensus pattern (11 bp): AATTTTAAGAA Left flanking sequence: Indices 13382243 -- 13382742 CAAAAAGCTCAAAATTTTTGAAAAGTTGGACTGAAAATTGTATTTTTTTAAAGAGTTTTTTGTGC TAAAATATACAAAACTACACAATTTTTTAAATTATTTTCCATTGAAAAATGCTCTGAAAAATCTG AATTTTCAGACCGAAGAGAGCAAAAACATGTCGATGGATTCGGTGAAGAACGTCGTTGATGCTGC TGCTCTTTCTGCTCCGGCTCCGGCTCCACTGAGCCAATCGGATCGTCTGAATCATGTGGATGAAG TGGAGGGAACAACACCCTCAAATGTCATGATAACTGTGTCGTCGGCGGCCGCGGCGTTGGAGAAG AAGGAGGAGGTTAGCCTCAGAAGCTTCCGCCGCGAGCAATTTTTAGTTCGGAAAAATGGGCAAAA AATCGAAATTTCCGGCAGATTTTTCAGCTTAAAAACTGAAATTTTGAGGAAATTCTAATTCTGAG AGACTTTCAGAATTTTGCCTAATTTGATTTTTTCCTGAAAAGCTG Right flanking sequence: Indices 13382767 -- 13383266 AATTAGCAAATTTTTTAATACTGAAATTAAAGCATATATATATATATATATATATATTATTCAAA ATTTCCGGCAAATTAGGCAAATCGATAATTTGCCGGTTTGCCGCTTTTCCGGGAATTTTCAAATC CAATATTTTGCCGATTTGCCGGAAATACTTTAATTCTGGCAAATTGCCGATAATTTGCCGAATTT GTCGACACAACAAAAAATTTGCCGCCCCCACCCATGCTTCACTGTACAAATTTGCCGCTTTTTCA CCTCTCCAAAACCGCCCCCAAAAATTTTCCATCATTTTTTCCAGGCCGCCTTTGCAGCAGCAGGA AGCCTCGACTCATGCGGGATCCCAATCTCCGGAGGAGGAGCCGCCGCACAAACCTCTGCACCCCA CTCAACACCCTACGGTACCCCAAAGGACACGCATATCCAGCAGCAGCAGCAGCCAGTGGTATTTG AAGAGATTCTCACTGCAAATGGACCCCCACCGCAGCCGTCTTCTC Found at i:13383311 original size:12 final size:12 Alignment explanation
Indices: 13383294--13383319 Score: 45 Period size: 12 Copynumber: 2.2 Consensus size: 12 13383284 ATTACAACTA 13383294 CAACAAGTGCTC 1 CAACAAGTGCTC * 13383306 CAACAATTGCTC 1 CAACAAGTGCTC 13383318 CA 1 CA 13383320 GCATCGTCTC Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.35, C:0.35, G:0.12, T:0.19 Consensus pattern (12 bp): CAACAAGTGCTC Left flanking sequence: Indices 13382794 -- 13383293 TAAAGCATATATATATATATATATATATATTATTCAAAATTTCCGGCAAATTAGGCAAATCGATA ATTTGCCGGTTTGCCGCTTTTCCGGGAATTTTCAAATCCAATATTTTGCCGATTTGCCGGAAATA CTTTAATTCTGGCAAATTGCCGATAATTTGCCGAATTTGTCGACACAACAAAAAATTTGCCGCCC CCACCCATGCTTCACTGTACAAATTTGCCGCTTTTTCACCTCTCCAAAACCGCCCCCAAAAATTT TCCATCATTTTTTCCAGGCCGCCTTTGCAGCAGCAGGAAGCCTCGACTCATGCGGGATCCCAATC TCCGGAGGAGGAGCCGCCGCACAAACCTCTGCACCCCACTCAACACCCTACGGTACCCCAAAGGA CACGCATATCCAGCAGCAGCAGCAGCCAGTGGTATTTGAAGAGATTCTCACTGCAAATGGACCCC CACCGCAGCCGTCTTCTCCACTACTACCAGCTCTCATTACAACTA Right flanking sequence: Indices 13383320 -- 13383819 GCATCGTCTCCGATCATCAATGCTTCTGGATCATCGATTCCAGCAGCTTCAACGTCTGGAATCTC ATTATTTCCCAGTGGTGGTGTCACATCGTCACTGACAACTCCATCGACGACTGCTGACACACATA CACCGATTGATAATAAGATTGAGCAGGCGATGGAGCTTGTCAAGACTCATTTAACGTATGCTGTA CGGGAAGAGGTTGATACGTTGAGAAATACTATTGCAGAGCTTGAATATCAGGTAAAATACACTGC AACTTTTTCCTCACGAGGGACGAGGAAAAGTGGTTTCTAGGCCATGGCCGAGGGGCCGACAAGTT TCAGCGGCCATTTATCTTGCTTTGTTTTCCGCCTGTTTTCTTTCGTTTTTCATCGATTTTTCCCG TTTTTTCTTAATAAAACTGATAAATAAATATTTTTTGCAGACGCTAAAACAATTTCCAAGTAAAA AAACCATGTATTCAGTGGGCAAGCAGCGGTGAAAGTGGTCAATGC Found at i:13385652 original size:19 final size:19 Alignment explanation
Indices: 13385628--13385665 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 13385618 TCCGCTGAGA 13385628 ATGTGGTGAGAAGTTACCT 1 ATGTGGTGAGAAGTTACCT 13385647 ATGTGGTGAGAAGTTACCT 1 ATGTGGTGAGAAGTTACCT 13385666 TCCAAGGGTA Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32 Consensus pattern (19 bp): ATGTGGTGAGAAGTTACCT Left flanking sequence: Indices 13385128 -- 13385627 TCAGTACAAAGAAAATATTCAATTTTCGCGGTCTCCAGAAACCCCCGCAAATCAGTGTTCTACCC TTCCCAAAACCAATCCCCTCAATAATGACCATGGTGGGGCAACTATTTTTGATGCATTCGCACTT ATTGAACGCAAAAGCGTCAGCTATGAGCCAAGTTGTTAAAGCTTAAAGTTTGTACATTTTAATCG GACACCCCATTACGACAACGTGCCCTTATTTTTTATTTCTGTCAAGAATGCAATTTCCGGATTTA ATATAGGAAGAGGCAGACTAGCGCGGCGGAGCCGCGCCAGCCCTTCGGGTATTGGGTGTGCCCGA AAAAATGGGGTCGCTACGACCAAAACTGACTGAGTTATGGTCATTTGAAGTTTATATTGTTCTTG GATCTTTATTAATTGTTTTCGGGCCTGCGGCCCTCAACCTGACTTATTGGGCTCAGAATAGGCTT GACGGTTGCCCAACACTTCTTCGTGTATTGCCTGTTCCGCTGAGA Right flanking sequence: Indices 13385666 -- 13386165 TCCAAGGGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGCGAATAACAATCTGC TTGGAATAGGATTAAAGCTGGCCCTTATTTTTCATGAGTATTCAGGCCTGCGGCCCTCAAACCTG GTTGGTAGGCTTGAGTGAATAACAACCTGCTTGGAAGAGGATTAAAGCTGACCCACAGTTTCCAA GAGTGTTCGGGCCTGCGGCGCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTGCTTGGA ATAGGATTATAGCCAGCCCAGTTTGCAAGACTAGTCGGGCCTGCGGCCCTCAAACCTGGTTGTTA GGCTTGAGTAAATAACAACCTGGGCCTGCGGCCCTCAAACCTGGTTGTTAGTCTTGAGTAAATAA CAACCTGCTTGGAATAGGATTAAAGCTGGCCCTTAGTTTCCATGAGTATTCGGGCCTGCGGCCCT CAAACCTGGTTGGTATTCTTGAGCGAATAACAATCTGCTTGGAAT Found at i:13385837 original size:95 final size:93 Alignment explanation
Indices: 13385665--13386012 Score: 520 Period size: 95 Copynumber: 3.7 Consensus size: 93 13385655 AGAAGTTACC * ** * 13385665 TTCCAAGGGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGCGAATAACAATCTG 1 TTCCAAGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG * 13385730 CTTGGAATAGGATTAAAGCTGGCCCTTATT 66 CTTGGAATAGGATTAAAGCTGGCCC--AGT * * * * 13385760 TTTCATGAGTATTCAGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTGAATAACAACCTG 1 TTCCAAGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG * * 13385825 CTTGGAAGAGGATTAAAGCTGACCCACAGT 66 CTTGGAATAGGATTAAAGCTG-GCC-CAGT * * 13385855 TTCCAAGAGTGTTCGGGCCTGCGGCGCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG 1 TTCCAAGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG * ** 13385920 CTTGGAATAGGATTATAGCCAGCCCAGT 66 CTTGGAATAGGATTAAAGCTGGCCCAGT * * * * 13385948 TTGCAAGACTAGTCGGGCCTGCGGCCCTCAAACCTGGTTGTTAGGCTTGAGTAAATAACAACCTG 1 TTCCAAGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG 13386013 GGCCTGCGGC Statistics Matches: 225, Mismatches: 26, Indels: 6 0.88 0.10 0.02 Matches are distributed among these distances: 93 63 0.28 94 2 0.01 95 157 0.70 96 2 0.01 97 1 0.00 ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26 Consensus pattern (93 bp): TTCCAAGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAACCTG CTTGGAATAGGATTAAAGCTGGCCCAGT Left flanking sequence: Indices 13385165 -- 13385664 GAAACCCCCGCAAATCAGTGTTCTACCCTTCCCAAAACCAATCCCCTCAATAATGACCATGGTGG GGCAACTATTTTTGATGCATTCGCACTTATTGAACGCAAAAGCGTCAGCTATGAGCCAAGTTGTT AAAGCTTAAAGTTTGTACATTTTAATCGGACACCCCATTACGACAACGTGCCCTTATTTTTTATT TCTGTCAAGAATGCAATTTCCGGATTTAATATAGGAAGAGGCAGACTAGCGCGGCGGAGCCGCGC CAGCCCTTCGGGTATTGGGTGTGCCCGAAAAAATGGGGTCGCTACGACCAAAACTGACTGAGTTA TGGTCATTTGAAGTTTATATTGTTCTTGGATCTTTATTAATTGTTTTCGGGCCTGCGGCCCTCAA CCTGACTTATTGGGCTCAGAATAGGCTTGACGGTTGCCCAACACTTCTTCGTGTATTGCCTGTTC CGCTGAGAATGTGGTGAGAAGTTACCTATGTGGTGAGAAGTTACC Right flanking sequence: Indices 13386013 -- 13386512 GGCCTGCGGCCCTCAAACCTGGTTGTTAGTCTTGAGTAAATAACAACCTGCTTGGAATAGGATTA AAGCTGGCCCTTAGTTTCCATGAGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTATTCTTGA GCGAATAACAATCTGCTTGGAATAGGATTAAAGCTGGCCCTTAGTTTCCATGAGTATTCGGACCT GCGGCCCTCAAACCTGGTTGGTATGCTTGAGCGAATAACAATCTGCTTGGAATATGATTAAAACC AGCTCACAGTTTCCAAGAGTGTTCGGGCCTGCGGCCCTCAAGCTGAATTATTGCGCTAAGAATAA GAACAATTGCTCGACGCTTCTACTTGTACTCTTTTTAAATCAAAAAATTCTCGAAATTCATTAAA ATAATATAATTCTCTTCGCGTGATAAATAAGAAATGAAAAATTGCCACAAAAGAGAGGGAGAGAG AGAGTGGAGAGAGAGTTTTTCACGTATTACATATTTTTGTTCATC Found at i:13386037 original size:50 final size:50 Alignment explanation
Indices: 13385962--13386062 Score: 195 Period size: 50 Copynumber: 2.0 Consensus size: 50 13385952 AAGACTAGTC 13385962 GGGCCTGCGGCCCTCAAACCTGGTTGTTAGGCTTGAGTAAATAACAACCT 1 GGGCCTGCGGCCCTCAAACCTGGTTGTTAGGCTTGAGTAAATAACAACCT * 13386012 GGGCCTGCGGCCCTCAAACCTGGTTGTTAGTCTTGAGTAAATAACAACCT 1 GGGCCTGCGGCCCTCAAACCTGGTTGTTAGGCTTGAGTAAATAACAACCT 13386062 G 1 G 13386063 CTTGGAATAG Statistics Matches: 50, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 50 50 1.00 ACGTcount: A:0.24, C:0.26, G:0.26, T:0.25 Consensus pattern (50 bp): GGGCCTGCGGCCCTCAAACCTGGTTGTTAGGCTTGAGTAAATAACAACCT Left flanking sequence: Indices 13385462 -- 13385961 GTCGCTACGACCAAAACTGACTGAGTTATGGTCATTTGAAGTTTATATTGTTCTTGGATCTTTAT TAATTGTTTTCGGGCCTGCGGCCCTCAACCTGACTTATTGGGCTCAGAATAGGCTTGACGGTTGC CCAACACTTCTTCGTGTATTGCCTGTTCCGCTGAGAATGTGGTGAGAAGTTACCTATGTGGTGAG AAGTTACCTTCCAAGGGTATTCGGGCCTGCGGCCCTCAAACCTGGTTGGTAGGCTTGAGCGAATA ACAATCTGCTTGGAATAGGATTAAAGCTGGCCCTTATTTTTCATGAGTATTCAGGCCTGCGGCCC TCAAACCTGGTTGGTAGGCTTGAGTGAATAACAACCTGCTTGGAAGAGGATTAAAGCTGACCCAC AGTTTCCAAGAGTGTTCGGGCCTGCGGCGCTCAAACCTGGTTGGTAGGCTTGAGTAAATAACAAC CTGCTTGGAATAGGATTATAGCCAGCCCAGTTTGCAAGACTAGTC Right flanking sequence: Indices 13386063 -- 13386562 CTTGGAATAGGATTAAAGCTGGCCCTTAGTTTCCATGAGTATTCGGGCCTGCGGCCCTCAAACCT GGTTGGTATTCTTGAGCGAATAACAATCTGCTTGGAATAGGATTAAAGCTGGCCCTTAGTTTCCA TGAGTATTCGGACCTGCGGCCCTCAAACCTGGTTGGTATGCTTGAGCGAATAACAATCTGCTTGG AATATGATTAAAACCAGCTCACAGTTTCCAAGAGTGTTCGGGCCTGCGGCCCTCAAGCTGAATTA TTGCGCTAAGAATAAGAACAATTGCTCGACGCTTCTACTTGTACTCTTTTTAAATCAAAAAATTC TCGAAATTCATTAAAATAATATAATTCTCTTCGCGTGATAAATAAGAAATGAAAAATTGCCACAA AAGAGAGGGAGAGAGAGAGTGGAGAGAGAGTTTTTCACGTATTACATATTTTTGTTCATCTTTTT AGTTTTTCGAAAACTTTAATGATGGCCTACATTTTCGAAATTGGG Found at