TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:2544691 original size:15 final size:15 Alignment explanation
Indices: 2544662--2544699 Score: 46 Period size: 15 Copynumber: 2.5 Consensus size: 15 2544652 CGGCAAATCG * 2544662 GCAAATTGGCAATTT 1 GCAAATTGCCAATTT * * 2544677 GCAATTTGCCGATTT 1 GCAAATTGCCAATTT 2544692 GCCAAATT 1 G-CAAATT 2544700 TATATGCGTT Statistics Matches: 18, Mismatches: 4, Indels: 1 0.78 0.17 0.04 Matches are distributed among these distances: 15 13 0.72 16 5 0.28 ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34 Consensus pattern (15 bp): GCAAATTGCCAATTT Left flanking sequence: Indices 2544162 -- 2544661 AAAGTTCACCTAACAAACTGTTGCTCATTTTTTTTTCGACACGATGAAACATGTTTCTAAACTCT ACATCAATCAGGACATTAGATACAGCGCCCGACATCTCGCGAGTTTGACGATTTTTCTTAAAACG ATTATAATTCCAGAGAGAAAAGTTTTCAAGTAAAAAGTTTTAAGAACAAAATAAAATGCATTAAT CAATCTATTATTTGCATAAAATCATGTTGTCTTCAAGTGCTTCGCAGATCAGAAATTAACGTTCA AACTGGCCATGTTTGAACACATTTTATGAAACTGGCAAAAATAAAATTCCTTTTTTGTTTTTCAG TCCTTCAAATGTAAATTCTTAAATGTAAATTCTACATTAGTTTCTGTAGATATATGCTTTAAAAA TGATTTTTTGAAAAACGCATCCCGTTTTTAGAACACCGGTGCAAAACAGGCACAAATGAGACGCC AGTATAAACCAGGGGTGGACGGCAAACGATTTTTCCGGCAAATCG Right flanking sequence: Indices 2544700 -- 2545199 TATATGCGTTTAAAACAAAGTCGTCAAAAAAAAGACTCGAGAGGTGTCGCGAGCTGTATCTATTG GCATGATTGTTGTGAATTGGTAAAATTTATTTCACCGTGTAGAAGACATCAGAAGCTACAGTTTC TTAGTTGAACTTATCCTGTCAAAAACTTCAGTTTCAGAATTCAAATCATTCAAAAATTTTGAAAA ATTAAAAAAAACCAAGTTAAAAAAAACCAGTTTGCGTACTTGTACAAGAGGCACCAGTGATACAA TGAAATGTTTGCAAAATCGCAAATAGTTTGCAAATTTCGCAAACCGAGACAAGTAAAATACTTCT AAAATGTTAGTGGTCCCGCAGCGAAATTCGCGATTTGCAAAAACGTCTAAAATATTGGTGCCCTC ATGTGCGGTTAATCTTTTTTATAAAATGAACCAGCTGTGGACTGGATCTCCGGCACGGCCCCCGA CTTCTGGTGCTGAAAACTAATTTTTCTGAAACTACCGTAATCATA Found at i:2544990 original size:19 final size:19 Alignment explanation
Indices: 2544962--2545002 Score: 59 Period size: 19 Copynumber: 2.2 Consensus size: 19 2544952 TGATACAATG 2544962 AAATGTTTGCAAA-ATCGC 1 AAATGTTTGCAAATATCGC * 2544980 AAATAGTTTGCAAATTTCGC 1 AAAT-GTTTGCAAATATCGC 2545000 AAA 1 AAA 2545003 CCGAGACAAG Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 18 4 0.20 19 9 0.45 20 7 0.35 ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29 Consensus pattern (19 bp): AAATGTTTGCAAATATCGC Left flanking sequence: Indices 2544462 -- 2544961 ATAAAATTCCTTTTTTGTTTTTCAGTCCTTCAAATGTAAATTCTTAAATGTAAATTCTACATTAG TTTCTGTAGATATATGCTTTAAAAATGATTTTTTGAAAAACGCATCCCGTTTTTAGAACACCGGT GCAAAACAGGCACAAATGAGACGCCAGTATAAACCAGGGGTGGACGGCAAACGATTTTTCCGGCA AATCGGCAAATTGGCAATTTGCAATTTGCCGATTTGCCAAATTTATATGCGTTTAAAACAAAGTC GTCAAAAAAAAGACTCGAGAGGTGTCGCGAGCTGTATCTATTGGCATGATTGTTGTGAATTGGTA AAATTTATTTCACCGTGTAGAAGACATCAGAAGCTACAGTTTCTTAGTTGAACTTATCCTGTCAA AAACTTCAGTTTCAGAATTCAAATCATTCAAAAATTTTGAAAAATTAAAAAAAACCAAGTTAAAA AAAACCAGTTTGCGTACTTGTACAAGAGGCACCAGTGATACAATG Right flanking sequence: Indices 2545003 -- 2545502 CCGAGACAAGTAAAATACTTCTAAAATGTTAGTGGTCCCGCAGCGAAATTCGCGATTTGCAAAAA CGTCTAAAATATTGGTGCCCTCATGTGCGGTTAATCTTTTTTATAAAATGAACCAGCTGTGGACT GGATCTCCGGCACGGCCCCCGACTTCTGGTGCTGAAAACTAATTTTTCTGAAACTACCGTAATCA TACAGTACTCCTACCGTAACTCTATTGTACCACTACAGTACTATATATATATATACTATATCCCT ACACTAAGCCCAACTCACTATTCCTCCAGAAGCCAAAACTTCACAGATTACAAAGACTACATAGA CTACAAACTATGGACAAATGGAATAAGCGTTTATATATAGTAAATGATGTTTATAAAATAAATTA ATTGCTACTTTTCTGTTCTGGAAAAAACATTAAAATCTAGAATTGTGGGTAAAAATTTTGACAAG TTTTTCAGTTGAAAACAGGAGTTGTGCAAAATGCAATATCTCGAA Found at i:2545233 original size:22 final size:22 Alignment explanation
Indices: 2545185--2545237 Score: 55 Period size: 22 Copynumber: 2.4 Consensus size: 22 2545175 TTTTTCTGAA * 2545185 ACTACCGTAATCATACAGTACT 1 ACTACCGTAATCATACAGTACC * ** 2545207 CCTACCGTAACTC-TATTGTACC 1 ACTACCGTAA-TCATACAGTACC * 2545229 ACTACAGTA 1 ACTACCGTA 2545238 CTATATATAT Statistics Matches: 24, Mismatches: 6, Indels: 2 0.75 0.19 0.06 Matches are distributed among these distances: 22 22 0.92 23 2 0.08 ACGTcount: A:0.32, C:0.30, G:0.09, T:0.28 Consensus pattern (22 bp): ACTACCGTAATCATACAGTACC Left flanking sequence: Indices 2544685 -- 2545184 CCGATTTGCCAAATTTATATGCGTTTAAAACAAAGTCGTCAAAAAAAAGACTCGAGAGGTGTCGC GAGCTGTATCTATTGGCATGATTGTTGTGAATTGGTAAAATTTATTTCACCGTGTAGAAGACATC AGAAGCTACAGTTTCTTAGTTGAACTTATCCTGTCAAAAACTTCAGTTTCAGAATTCAAATCATT CAAAAATTTTGAAAAATTAAAAAAAACCAAGTTAAAAAAAACCAGTTTGCGTACTTGTACAAGAG GCACCAGTGATACAATGAAATGTTTGCAAAATCGCAAATAGTTTGCAAATTTCGCAAACCGAGAC AAGTAAAATACTTCTAAAATGTTAGTGGTCCCGCAGCGAAATTCGCGATTTGCAAAAACGTCTAA AATATTGGTGCCCTCATGTGCGGTTAATCTTTTTTATAAAATGAACCAGCTGTGGACTGGATCTC CGGCACGGCCCCCGACTTCTGGTGCTGAAAACTAATTTTTCTGAA Right flanking sequence: Indices 2545238 -- 2545737 CTATATATATATATACTATATCCCTACACTAAGCCCAACTCACTATTCCTCCAGAAGCCAAAACT TCACAGATTACAAAGACTACATAGACTACAAACTATGGACAAATGGAATAAGCGTTTATATATAG TAAATGATGTTTATAAAATAAATTAATTGCTACTTTTCTGTTCTGGAAAAAACATTAAAATCTAG AATTGTGGGTAAAAATTTTGACAAGTTTTTCAGTTGAAAACAGGAGTTGTGCAAAATGCAATATC TCGAAGAAAAAACGGAATTTCTTTTTGAAAAAGTACCAAAAACTTTTCCATCATTTTAACTTTTA GAAAATATGTTTGAAAAGTTCGCAGCTTATCAGGTTCTAAAGGTACGTCAGTTTACCCAGTTGCA GTCATTCGCAGTAGATTACAATTTTTCAGAAGATAACATTATTCGGTCACGCGTAGATCACAGAT TCATTTTCTCTCAAATCGTATTTCTGTTGTGATCTACACGAATTT Found at i:2545334 original size:18 final size:17 Alignment explanation
Indices: 2545296--2545334 Score: 48 Period size: 18 Copynumber: 2.2 Consensus size: 17 2545286 CTCCAGAAGC * * 2545296 CAAAACTTCACAGATTA 1 CAAAACTACACAGACTA * 2545313 CAAAGACTACATAGACTA 1 CAAA-ACTACACAGACTA 2545331 CAAA 1 CAAA 2545335 CTATGGACAA Statistics Matches: 18, Mismatches: 3, Indels: 1 0.82 0.14 0.05 Matches are distributed among these distances: 17 4 0.22 18 14 0.78 ACGTcount: A:0.51, C:0.23, G:0.08, T:0.18 Consensus pattern (17 bp): CAAAACTACACAGACTA Left flanking sequence: Indices 2544796 -- 2545295 TCACCGTGTAGAAGACATCAGAAGCTACAGTTTCTTAGTTGAACTTATCCTGTCAAAAACTTCAG TTTCAGAATTCAAATCATTCAAAAATTTTGAAAAATTAAAAAAAACCAAGTTAAAAAAAACCAGT TTGCGTACTTGTACAAGAGGCACCAGTGATACAATGAAATGTTTGCAAAATCGCAAATAGTTTGC AAATTTCGCAAACCGAGACAAGTAAAATACTTCTAAAATGTTAGTGGTCCCGCAGCGAAATTCGC GATTTGCAAAAACGTCTAAAATATTGGTGCCCTCATGTGCGGTTAATCTTTTTTATAAAATGAAC CAGCTGTGGACTGGATCTCCGGCACGGCCCCCGACTTCTGGTGCTGAAAACTAATTTTTCTGAAA CTACCGTAATCATACAGTACTCCTACCGTAACTCTATTGTACCACTACAGTACTATATATATATA TACTATATCCCTACACTAAGCCCAACTCACTATTCCTCCAGAAGC Right flanking sequence: Indices 2545335 -- 2545834 CTATGGACAAATGGAATAAGCGTTTATATATAGTAAATGATGTTTATAAAATAAATTAATTGCTA CTTTTCTGTTCTGGAAAAAACATTAAAATCTAGAATTGTGGGTAAAAATTTTGACAAGTTTTTCA GTTGAAAACAGGAGTTGTGCAAAATGCAATATCTCGAAGAAAAAACGGAATTTCTTTTTGAAAAA GTACCAAAAACTTTTCCATCATTTTAACTTTTAGAAAATATGTTTGAAAAGTTCGCAGCTTATCA GGTTCTAAAGGTACGTCAGTTTACCCAGTTGCAGTCATTCGCAGTAGATTACAATTTTTCAGAAG ATAACATTATTCGGTCACGCGTAGATCACAGATTCATTTTCTCTCAAATCGTATTTCTGTTGTGA TCTACACGAATTTTACACAAAAACTGCTAAAATGTTGACTAAACGCTGTCACGAAACGACCAAAA AAAAATCGAATTTCTTCAGAAAACCAAAAAACAAAACAACAAAAA Found at i:2546103 original size:11 final size:11 Alignment explanation
Indices: 2546087--2546108 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 2546077 GCAGGATCTT 2546087 TTTTTTCTCAA 1 TTTTTTCTCAA 2546098 TTTTTTCTCAA 1 TTTTTTCTCAA 2546109 AAATTGTACA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64 Consensus pattern (11 bp): TTTTTTCTCAA Left flanking sequence: Indices 2545587 -- 2546086 GCTTATCAGGTTCTAAAGGTACGTCAGTTTACCCAGTTGCAGTCATTCGCAGTAGATTACAATTT TTCAGAAGATAACATTATTCGGTCACGCGTAGATCACAGATTCATTTTCTCTCAAATCGTATTTC TGTTGTGATCTACACGAATTTTACACAAAAACTGCTAAAATGTTGACTAAACGCTGTCACGAAAC GACCAAAAAAAAATCGAATTTCTTCAGAAAACCAAAAAACAAAACAACAAAAAATTTTCGATTTT TTCCTCAAACCAACTAAAACAGGGGTGTTCGGCAAATCTCAAAATTTGCTGAACTCGACAAATTC GGAAAATTTACTTTTTTGAAGTTTGCCGTGCTCGGCGAATTCGGCAAATTCGCTGCACATCCCTG AACTAACATATACCAGTTTTCAGAAACAACTTTTTAGTTTTTTTTGTTACGAAAAAACCAAAAAA CTACAACCTGTATTGCGCCTTTTTTTCTCATTTTAGCAGGATCTT Right flanking sequence: Indices 2546109 -- 2546608 AAATTGTACAACCTATTGTTTAATAGAGAAATGACAAAAAAATTTTTAAAATCTAAATTTTACGT GAAATTTCAAAAACCCCAAAAAACCCTACACGTGTTTGTCTTTTTCCCTCATGCTGACAAATCAT AACAAATTCGATTCATTTCTTTCGTCCGACTGAATTCGTTTTGTTCGCAGAATGAAGAAAAATCT ACTTATCAATTTATTGTTGCTGATGCTCAATGGATTCCAATCGAAACCAGGTATTCTTTTTTTTG GACGGCTGCATAAATGCCGCGATAAACTTTCAAATTTTGAAATATATAAAAGAGAAACAAATCGG TTCAGCCATGTTATATGGGACAAAATACACACTTTCAGAAACGTTTTTTTTCCTATTATTGCTGT TTCTTGTCTTGAGCATTTCGTGTAAGATTGTTTTTTTTTTCCGGAGTTTTTAACGTAATCACATT AAAAATTAGAAATGACTGAAAACGCTGACAATACATTTTGGCGAG Found at i:2547160 original size:12 final size:12 Alignment explanation
Indices: 2547137--2547166 Score: 39 Period size: 12 Copynumber: 2.5 Consensus size: 12 2547127 TCAATGAAAG * 2547137 TGGATAATCTTC 1 TGGATAAACTTC * 2547149 TGGATGAACTTC 1 TGGATAAACTTC * 2547161 TGAATA 1 TGGATA 2547167 TTTCACCAGG Statistics Matches: 14, Mismatches: 4, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37 Consensus pattern (12 bp): TGGATAAACTTC Left flanking sequence: Indices 2546637 -- 2547136 TGTTTTTTTGGTTCAACAATAAATTAATTTCAAACCTAAAGCCACTTACTACAATCCAATAATTA TATAATGAAGTGCAAAACTCGGAAACAGGGGTATGCGACAAATTTTGAAAATTTTCTGATCTAAA GTATTGGACACAATTTCTATGAAAAGTTTAAAGTGTGCGGCAAATTTCAAAATTTCCCGAGGTCG GAAAATTCGGCGAGTCCACATTTTTGAAATTTTCAGTGCTCGGCAATTTCGGAAAATTTGCCGCA CACTCCTGCTCGGAAAATATCGTGAAACATCAACCGATTACTCAGTTTTTTTTTAATTTTCAAAA CCAGAAAAAAACCACAAGCCCATTTTTCAAACATTTTAAATTATTTTATTTTCAGCTGCTCCCTC ACCTCCTAGCTCATCTGCTCTCCACGATGCCATTGACAAGCTCTCCATCGTTGCTCGTGTCACCA ATGCAATCACGATTCAAAAAGGACTCAACGACAAGTCAATGAAAG Right flanking sequence: Indices 2547167 -- 2547666 TTTCACCAGGTGACGGGTTCTCTTACCTTCAGAGTCTTGATGTGAAAAAGGCAAAAGAGGGATAC ATTGGTATTGCAAAGGATGCGGGGGCGTTGACGAAGAGTTCACTGGATGGTGCAAAGAATGCTCA GAGATTGAAGCATTTGGGAGATATGGGAAAGAATGTGGAGATGTTGAAAAAGGCAAAGGATGCTG ATTTGAAGGATGCTATTGATAAAGCGGAGGGAGCATTGAGTTTTCCAGCAGAAGACATTCCGTCT TCAATAGAAACATATTCCAATTCCCTGAATGTCTTTTTCGAATTGGAGTGGAAATCAGCAGATGC AGATAAAAAGATAATTGATAGCATTCCTAATCTTCAAGAAAAGCTTGATCCACTTGGTATCATTT TGTCTGGTGCACCCAATTTTGAAACTAAATTGAAATCGATCTGGTCGTTTATCAATCAATCACAG AATTTCAATATTGTTGAGCACTTAGGCGAGGTGGTGGAGCCGTAT Found at i:2552060 original size:12 final size:12 Alignment explanation
Indices: 2552036--2552078 Score: 58 Period size: 12 Copynumber: 3.6 Consensus size: 12 2552026 GCAAAAAAGG * 2552036 TTAGGCTTAGGA 1 TTAAGCTTAGGA * 2552048 TTAAGCTTTGGA 1 TTAAGCTTAGGA * 2552060 TTAAGCTTAGGC 1 TTAAGCTTAGGA * 2552072 TTAGGCT 1 TTAAGCT 2552079 AAGACCATCC Statistics Matches: 26, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 12 26 1.00 ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37 Consensus pattern (12 bp): TTAAGCTTAGGA Left flanking sequence: Indices 2551536 -- 2552035 TGATCAAGAAATTTTGAGCAAAAATGAAAAAAATAAAAATTTCCAAAAAGTGCGGGCAATGATTC TAGGTTCCCGAATAAGAATAAAATCACTTTAAAAATGCGCAAAAATGTTTGAATGAGTTGTTTAA AACTTTATTCAACTTACAAAAATATTTCAAAAATAGAAGGAATCGAACCAAAGCTTAAATCTTAT CATACGCGCGCACTCCCAACTCGGCCACCAAGGACATTTTTCAACTCAATGTGGTGGGTGTCACA TTTTCGGTGGTCACGCAAGCTGAGATTTGCGTGGACTGCATGGTAAGACAGTGGATTTCAATGGT GTTTTTAACTGAAATTTCAAAACGTCATAACTTTGCTGAAACTTGACCGGGGCAGCTAAATTTTT TGGAGAGATCATAACTAACACTCTTCTGTAGGAATTTTAGCATGAGAACCCCAAATCTACGGACC CCCTCAAAGACTTCCCTTGTTAGTGCAACTTTCTGGCAAAAAAGG Right flanking sequence: Indices 2552079 -- 2552578 AAGACCATCCCGCAACTTTCTGGCAAAAAACTGACATAATACTCAAATACTAAAATAAATTACGC AAACCTTTAATTCACTCGTTCCAGGTGGCGATTACGAATTCTTCACTCCTCTTCACATGGCTGTT CAAGAAGGACTGCCCAATTTTGTAGAGTATCTCATTCGCAACGGTGCCGACGTCAACAAAATAGA CAGCAACTACCAACTTCCCATCGAGTTGGCTGGAAAAGTGGAGAAGCGGGATGAGCTTCTTGCCG TGTTCAACAAGTTTAAGGGCAAAAAGTTCCCGCGGAAGTTCCCCAAGTTTGGACCCGAGAATTAC AAAGTTTGGTGCTACGTGAATGAACTTGATAAGGATGAAACCAGCGAATACTACATTTCGAGAAC GGAGTTCAGCAAACTATACGCTGGAAATGTAAGCGGTTGATGTGCTCCCTGAATTTCTTTATTTT TTAAATTTCAGGTGGTCAGAAAAGTGGAAGATGCAACCCATATTG Found at i:2553707 original size:20 final size:20 Alignment explanation
Indices: 2553681--2553743 Score: 78 Period size: 20 Copynumber: 3.0 Consensus size: 20 2553671 ATGTTGCCGG * 2553681 AAGTTTCCAGATGTTTTCGAA 1 AAGTTTCTAGAT-TTTTCGAA * 2553702 AA-TTTCTAGATTTTTCTAA 1 AAGTTTCTAGATTTTTCGAA 2553721 AAGTTTCTAGATATTTTCAGAA 1 AAGTTTCTAGAT-TTTTC-GAA 2553743 A 1 A 2553744 CTTCCATTAT Statistics Matches: 36, Mismatches: 3, Indels: 5 0.82 0.07 0.11 Matches are distributed among these distances: 19 9 0.25 20 17 0.47 21 7 0.19 22 3 0.08 ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43 Consensus pattern (20 bp): AAGTTTCTAGATTTTTCGAA Left flanking sequence: Indices 2553181 -- 2553680 TGTAGCGTCCAAGCTGCTACTATTTCAAAAGCAAATTTGGTAAATTTCAGCTTTGGAAAAAATGC GACTTTGTGTTCCATAACAACCGTTTCTTGATCGTATCGCCCACTGAACTCATCGAGTTCCTTTT CGAATTCAAAATTAACCACTATAAGATTACTGGCAAAAAAGAGAAGACTTGTATTGAGAAATGGG ATTCAGTAGATCAAAATATCGCTACTCGAAAGAAACAAAAGAAACCGACCGAGAAACTTGACCGC ATCGAAAAAATTTTTGGAGTCAACCTCGGGGATTATGATGGTGACGATGATGTCTTGCTGCCGTG ATGATGAACAATTTTTATAGAGTACTTCTTGTGTGAATAGTGTAGAATAGAATGAAAAATTTGAA TTGAAAAACGTTCACTGTTTGGGGATAATCACAGATATTGTTTGGGGACATAATCACAGAAAATT GCGGAAGTTTCTAGAACTGCCTAGATTTTACTAAAATGTTGCCGG Right flanking sequence: Indices 2553744 -- 2554243 CTTCCATTATCCTGAGCCTAAACCTAAGTGTTGTGGACGGAACGTAAACCTGAACTTTATACAGA CGTGACCTTTGGGTCATCATGAACTTATCGCGGAAGCGACCTCTCTTTATAATTCATTACTTCTT ACACTCTCTTGTAATAAACTTCTTCTCTCCTTGTTACTCGCTCAATACACAACAGTGGCGATCAG GAATATCGAAACCACACCAGGACAATGGAATCGTCAGGTAAATCATCCGCTAACCCAAATTTGCT CGCTGAGACGCTCACAACTATGCAAGCCCAACTCCAAACTCAGACTGAGATTTCTCAGCAGGTTA TGGAGGACAATAAAAACCAGTCGGCGTTGCTGAAGCAACAGAGGGAGATGTCGCAGGCGTTGCTG GAAGAGAATAAGCGGCTGCGCGCGGCGCAGGGGGATCAGCCTAGATTCGTGGCTGTGGGTGAAAA ACCGCTAAATAGCGTAAAACTTATGAGTGACTTGCTGCGTCAGTT Found at i:2556503 original size:20 final size:20 Alignment explanation
Indices: 2556462--2556504 Score: 51 Period size: 20 Copynumber: 2.1 Consensus size: 20 2556452 CTAAGCCTAA * * 2556462 CTAGGCAGCCCTAGCCCGCC 1 CTAGGCAGACCTAGCCCACC * * * 2556482 CTAGGCAGACTTGGCCTACC 1 CTAGGCAGACCTAGCCCACC 2556502 CTA 1 CTA 2556505 ACCTGAACCT Statistics Matches: 18, Mismatches: 5, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.19, C:0.42, G:0.23, T:0.16 Consensus pattern (20 bp): CTAGGCAGACCTAGCCCACC Left flanking sequence: Indices 2555962 -- 2556461 TCACGGAGAGCAAGAGTTCGTTGAAGAAAAGCCACAGAAGACGTCGCCGTGTGGCTAAGAGTCGC CAATCATATACTGCTGGAAGTTCGCCAATCAAAGAAACCCATCTGGACCCCCTGCTGGAATCCGA TGTTGCGAGTGACGGCGAGCGTTTCCAACCCGGCATCCTCCTGCGTCATTCTCTTCGACAGAGCC ACCCACGACAAGTTGTGCGAGGATCAGCCCCAAACACTGATCATGTCTCCACTCGGCGCAGAGGT CGAGATACCGCCTCTGGTCGTGATGCCCCTAGCCCAGGCATAATTTCTGGCTTTTTGTCATATAA GAGGGGAGATGTTGTGGACGGAACGTAAACCTGAACTTTATACAGACGTGACCTTTGGGTCATCA TGAACTTATCGCGTAAGCGACCTCTCTTTATAATTCATTACTTCTTACACTCTCTTGTAATAAAC TTCTTCTCTCCTTGTTACTCGCTCAATACACAACACTAAGCCTAA Right flanking sequence: Indices 2556505 -- 2557004 ACCTGAACCTCGAGCGCAAGCCCGACGAGCGCAAGCCCCGAAGAGCGCGAGCCCCGACGAGCGCA AGCCCCGAAGAGCGCGAGCCCCGAAGCTCGAGCTCGAGTTGGGTTAGAGGCCATTCGAACGTGCG GTTTTACCCGGCTCCCTCGCACTTAGCGAGGGTCAAAGACATGCGGCACCCAACAACGACCGCCC AAAATTCACCGATAACCCAGGAAGCTCCCGAAGGCTTGAGGGAGAGGGTTAGCTGGCCCTCCGCC AGGCCAGAGATTTGCTTTCGCAGAGCTCTGGCAGTGGTGGGACAACAATATGAAGGGAGGTCATC ATCTGGATGTACGGACAACTCACGGGTTCCGCTAGTTGCAGTGGAAAGAATGCAGGTTACTGGGA ACACCTATCGATCGTAGAAGAGACGCGCGAGGACGACGCACGTCATCGCCTCCCCCCGTCTTGAC GGGAAAGGCAGGCGAACCACAAACGGGAAAACGGTGTATATATCG Found at i:2556550 original size:16 final size:16 Alignment explanation
Indices: 2556516--2556595 Score: 125 Period size: 16 Copynumber: 5.1 Consensus size: 16 2556506 CCTGAACCTC * 2556516 GAGCGCAAG-CCCGAC 1 GAGCGCAAGCCCCGAA 2556531 GAGCGCAAGCCCCGAA 1 GAGCGCAAGCCCCGAA * * 2556547 GAGCGCGAGCCCCGAC 1 GAGCGCAAGCCCCGAA 2556563 GAGCGCAAGCCCCGAA 1 GAGCGCAAGCCCCGAA * 2556579 GAGCGCGAGCCCCGAA 1 GAGCGCAAGCCCCGAA 2556595 G 1 G 2556596 CTCGAGCTCG Statistics Matches: 58, Mismatches: 6, Indels: 1 0.89 0.09 0.02 Matches are distributed among these distances: 15 9 0.16 16 49 0.84 ACGTcount: A:0.26, C:0.39, G:0.35, T:0.00 Consensus pattern (16 bp): GAGCGCAAGCCCCGAA Left flanking sequence: Indices 2556016 -- 2556515 CTAAGAGTCGCCAATCATATACTGCTGGAAGTTCGCCAATCAAAGAAACCCATCTGGACCCCCTG CTGGAATCCGATGTTGCGAGTGACGGCGAGCGTTTCCAACCCGGCATCCTCCTGCGTCATTCTCT TCGACAGAGCCACCCACGACAAGTTGTGCGAGGATCAGCCCCAAACACTGATCATGTCTCCACTC GGCGCAGAGGTCGAGATACCGCCTCTGGTCGTGATGCCCCTAGCCCAGGCATAATTTCTGGCTTT TTGTCATATAAGAGGGGAGATGTTGTGGACGGAACGTAAACCTGAACTTTATACAGACGTGACCT TTGGGTCATCATGAACTTATCGCGTAAGCGACCTCTCTTTATAATTCATTACTTCTTACACTCTC TTGTAATAAACTTCTTCTCTCCTTGTTACTCGCTCAATACACAACACTAAGCCTAACTAGGCAGC CCTAGCCCGCCCTAGGCAGACTTGGCCTACCCTAACCTGAACCTC Right flanking sequence: Indices 2556596 -- 2557095 CTCGAGCTCGAGTTGGGTTAGAGGCCATTCGAACGTGCGGTTTTACCCGGCTCCCTCGCACTTAG CGAGGGTCAAAGACATGCGGCACCCAACAACGACCGCCCAAAATTCACCGATAACCCAGGAAGCT CCCGAAGGCTTGAGGGAGAGGGTTAGCTGGCCCTCCGCCAGGCCAGAGATTTGCTTTCGCAGAGC TCTGGCAGTGGTGGGACAACAATATGAAGGGAGGTCATCATCTGGATGTACGGACAACTCACGGG TTCCGCTAGTTGCAGTGGAAAGAATGCAGGTTACTGGGAACACCTATCGATCGTAGAAGAGACGC GCGAGGACGACGCACGTCATCGCCTCCCCCCGTCTTGACGGGAAAGGCAGGCGAACCACAAACGG GAAAACGGTGTATATATCGATCGAGTGTTTATATGTAGATGGCGTTGGTAGTGATGAGTTCAATT CCAAGAGAAGGAATTTCTCTATTTTAATTTATTTTTTCTAGAAAT Found at i:2556566 original size:32 final size:32 Alignment explanation
Indices: 2556516--2556593 Score: 142 Period size: 32 Copynumber: 2.5 Consensus size: 32 2556506 CCTGAACCTC * 2556516 GAGCGCAAG-CCCGACGAGCGCAAGCCCCGAA 1 GAGCGCGAGCCCCGACGAGCGCAAGCCCCGAA 2556547 GAGCGCGAGCCCCGACGAGCGCAAGCCCCGAA 1 GAGCGCGAGCCCCGACGAGCGCAAGCCCCGAA 2556579 GAGCGCGAGCCCCGA 1 GAGCGCGAGCCCCGA 2556594 AGCTCGAGCT Statistics Matches: 45, Mismatches: 1, Indels: 1 0.96 0.02 0.02 Matches are distributed among these distances: 31 8 0.18 32 37 0.82 ACGTcount: A:0.26, C:0.40, G:0.35, T:0.00 Consensus pattern (32 bp): GAGCGCGAGCCCCGACGAGCGCAAGCCCCGAA Left flanking sequence: Indices 2556016 -- 2556515 CTAAGAGTCGCCAATCATATACTGCTGGAAGTTCGCCAATCAAAGAAACCCATCTGGACCCCCTG CTGGAATCCGATGTTGCGAGTGACGGCGAGCGTTTCCAACCCGGCATCCTCCTGCGTCATTCTCT TCGACAGAGCCACCCACGACAAGTTGTGCGAGGATCAGCCCCAAACACTGATCATGTCTCCACTC GGCGCAGAGGTCGAGATACCGCCTCTGGTCGTGATGCCCCTAGCCCAGGCATAATTTCTGGCTTT TTGTCATATAAGAGGGGAGATGTTGTGGACGGAACGTAAACCTGAACTTTATACAGACGTGACCT TTGGGTCATCATGAACTTATCGCGTAAGCGACCTCTCTTTATAATTCATTACTTCTTACACTCTC TTGTAATAAACTTCTTCTCTCCTTGTTACTCGCTCAATACACAACACTAAGCCTAACTAGGCAGC CCTAGCCCGCCCTAGGCAGACTTGGCCTACCCTAACCTGAACCTC Right flanking sequence: Indices 2556594 -- 2557093 AGCTCGAGCTCGAGTTGGGTTAGAGGCCATTCGAACGTGCGGTTTTACCCGGCTCCCTCGCACTT AGCGAGGGTCAAAGACATGCGGCACCCAACAACGACCGCCCAAAATTCACCGATAACCCAGGAAG CTCCCGAAGGCTTGAGGGAGAGGGTTAGCTGGCCCTCCGCCAGGCCAGAGATTTGCTTTCGCAGA GCTCTGGCAGTGGTGGGACAACAATATGAAGGGAGGTCATCATCTGGATGTACGGACAACTCACG GGTTCCGCTAGTTGCAGTGGAAAGAATGCAGGTTACTGGGAACACCTATCGATCGTAGAAGAGAC GCGCGAGGACGACGCACGTCATCGCCTCCCCCCGTCTTGACGGGAAAGGCAGGCGAACCACAAAC GGGAAAACGGTGTATATATCGATCGAGTGTTTATATGTAGATGGCGTTGGTAGTGATGAGTTCAA TTCCAAGAGAAGGAATTTCTCTATTTTAATTTATTTTTTCTAGAA Found at i:2558154 original size:43 final size:43 Alignment explanation
Indices: 2558048--2558161 Score: 137 Period size: 43 Copynumber: 2.7 Consensus size: 43 2558038 GGCGGCAAAT * * * * * 2558048 CGGCATATTGCCGGTTTGCCGATTTGCCGGAATTTTTTATTCC 1 CGGCAAATTGCCGATCTGCCGATTTGCCGGAATTTTTCAATCC * * * * * 2558091 CGGGACATTGCCGGTTTGCCGATTTGCCGGAATTTTTCAATTC 1 CGGCAAATTGCCGATCTGCCGATTTGCCGGAATTTTTCAATCC * * 2558134 CGGCAATTTGTCGATCTGCCGA-TTGCCG 1 CGGCAAATTGCCGATCTGCCGATTTGCCG 2558162 AATATCAATT Statistics Matches: 60, Mismatches: 11, Indels: 1 0.83 0.15 0.01 Matches are distributed among these distances: 42 6 0.10 43 54 0.90 ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35 Consensus pattern (43 bp): CGGCAAATTGCCGATCTGCCGATTTGCCGGAATTTTTCAATCC Left flanking sequence: Indices 2557548 -- 2558047 TTAACCACTGGAAGATTACTGGCAAAAAAGGGACGACTTGTATTGAGAAATGGGATTCAGTAGAT CAAAATATCGCTACTCAAAAGAAACAAAAGAAACCGACCGAGAAACTTGACCGCATCGAACACAG CTATGGAGTTAGTCACGAGGATTATGACGATAATGATGATTGCTGGGTGCCGTACTGATGAACTA CTAGTGTATTATACATAGAACAGAATAAAACATATTTTGAATTGAAAAATTAATTTTATTAATTT TATCAGACATAGTTTACACAATTCAGTACAATTTACACTTCATCTCCGGGTTCATTGGTGAATTT TTGGGGCAGTTGAAGGCCTCCGCAAATTCTGGAATATTCTGAATGACACCGTTCACGCGGTATCG ATTTGTCGGGTGTTGCCGGGCAAGCATGTTTCTCGGCAACTTATTCGGGTTGTACACGTCACATT GTCGCTGGAAATATGGATACATGAACCGGATGGGGGGCGGCAAAT Right flanking sequence: Indices 2558162 -- 2558661 AATATCAATTTGCCGGAAGTTTTTTTTTAGTTTTTAGAGGGGTTTTTGATTCTTTTTTTAAGACG GAAACACTTGAAAATTTTCGGCAATTGCCGTTTTTCCGGCAAATTCGGTAAATTGGCAATTTGCC GGTTTGCCGATTTGTCGGAAAATTTAAATTCCGGCAAATTGCCGGTTTGCCGATTTGCAGGAAAT TTTTTTTTCCGGAAATTTGCCGATTTGCTGGAATTAAAATTGAAATTCTGAATTTTCCAAAAAAA AAAAAAGAATGTGCAGAACCACAATTTGCCCAAAATTTTCGGCAATTGCCGTTTTTCCGGCAAAT TCGGTAAATCGGCAATTTGCCGGTTTGCCGATTTGTCGGATTCGCCGAAAAGGAACTCTGGCCAA TGTCTGTCTAAGTCAGAGACCATGTTGTAGATAGATGAGACTAACGATTTTTCAGATGTGAAGTT ATGGGCCCAGACCTTAGGCCGAAGCCTGATCTTAGCTCAAGGCCT Found at i:2558335 original size:43 final size:43 Alignment explanation
Indices: 2558281--2558384 Score: 145 Period size: 43 Copynumber: 2.4 Consensus size: 43 2558271 TCGGTAAATT ** 2558281 GGCAATTTGCCGGTTTGCCGATTTGTCGGAAAATTTAAATTCC 1 GGCAATTTGCCGGTTTGCCGATTTGCAGGAAAATTTAAATTCC * * *** 2558324 GGCAAATTGCCGGTTTGCCGATTTGCAGGAAATTTTTTTTTCC 1 GGCAATTTGCCGGTTTGCCGATTTGCAGGAAAATTTAAATTCC * * 2558367 GGAAATTTGCCGATTTGC 1 GGCAATTTGCCGGTTTGC 2558385 TGGAATTAAA Statistics Matches: 51, Mismatches: 10, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 43 51 1.00 ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37 Consensus pattern (43 bp): GGCAATTTGCCGGTTTGCCGATTTGCAGGAAAATTTAAATTCC Left flanking sequence: Indices 2557781 -- 2558280 GAATTGAAAAATTAATTTTATTAATTTTATCAGACATAGTTTACACAATTCAGTACAATTTACAC TTCATCTCCGGGTTCATTGGTGAATTTTTGGGGCAGTTGAAGGCCTCCGCAAATTCTGGAATATT CTGAATGACACCGTTCACGCGGTATCGATTTGTCGGGTGTTGCCGGGCAAGCATGTTTCTCGGCA ACTTATTCGGGTTGTACACGTCACATTGTCGCTGGAAATATGGATACATGAACCGGATGGGGGGC GGCAAATCGGCATATTGCCGGTTTGCCGATTTGCCGGAATTTTTTATTCCCGGGACATTGCCGGT TTGCCGATTTGCCGGAATTTTTCAATTCCGGCAATTTGTCGATCTGCCGATTGCCGAATATCAAT TTGCCGGAAGTTTTTTTTTAGTTTTTAGAGGGGTTTTTGATTCTTTTTTTAAGACGGAAACACTT GAAAATTTTCGGCAATTGCCGTTTTTCCGGCAAATTCGGTAAATT Right flanking sequence: Indices 2558385 -- 2558884 TGGAATTAAAATTGAAATTCTGAATTTTCCAAAAAAAAAAAAAGAATGTGCAGAACCACAATTTG CCCAAAATTTTCGGCAATTGCCGTTTTTCCGGCAAATTCGGTAAATCGGCAATTTGCCGGTTTGC CGATTTGTCGGATTCGCCGAAAAGGAACTCTGGCCAATGTCTGTCTAAGTCAGAGACCATGTTGT AGATAGATGAGACTAACGATTTTTCAGATGTGAAGTTATGGGCCCAGACCTTAGGCCGAAGCCTG ATCTTAGCTCAAGGCCTAGTCTCAGGCTAAATTCAGACCTTAGGCCAAAGGTCAAAGCCAAGAAC ATATGATGGGAGCAGGTGCCTATAAGCGCCTACGTTAGTATCGATTCGTACTTTCAGGCCTATTA ATTATTTATGCCTTATGGGACTAGAACGGTCTAATCCGGCCAAGGTTAGTGGCCTGCTCATTGGC CTAAACTCACAAATGCATAGTTATAGAAGAACAACTGTTCCTCCG Found at i:2558520 original size:16 final size:17 Alignment explanation
Indices: 2558501--2558534 Score: 47 Period size: 16 Copynumber: 2.1 Consensus size: 17 2558491 TAAATCGGCA * 2558501 ATTTGCCGG-TTTGCCG 1 ATTTGCCGGATTCGCCG * 2558517 ATTTGTCGGATTCGCCG 1 ATTTGCCGGATTCGCCG 2558534 A 1 A 2558535 AAAGGAACTC Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 16 8 0.53 17 7 0.47 ACGTcount: A:0.12, C:0.24, G:0.29, T:0.35 Consensus pattern (17 bp): ATTTGCCGGATTCGCCG Left flanking sequence: Indices 2558001 -- 2558500 TTGTCGCTGGAAATATGGATACATGAACCGGATGGGGGGCGGCAAATCGGCATATTGCCGGTTTG CCGATTTGCCGGAATTTTTTATTCCCGGGACATTGCCGGTTTGCCGATTTGCCGGAATTTTTCAA TTCCGGCAATTTGTCGATCTGCCGATTGCCGAATATCAATTTGCCGGAAGTTTTTTTTTAGTTTT TAGAGGGGTTTTTGATTCTTTTTTTAAGACGGAAACACTTGAAAATTTTCGGCAATTGCCGTTTT TCCGGCAAATTCGGTAAATTGGCAATTTGCCGGTTTGCCGATTTGTCGGAAAATTTAAATTCCGG CAAATTGCCGGTTTGCCGATTTGCAGGAAATTTTTTTTTCCGGAAATTTGCCGATTTGCTGGAAT TAAAATTGAAATTCTGAATTTTCCAAAAAAAAAAAAAGAATGTGCAGAACCACAATTTGCCCAAA ATTTTCGGCAATTGCCGTTTTTCCGGCAAATTCGGTAAATCGGCA Right flanking sequence: Indices 2558535 -- 2559034 AAAGGAACTCTGGCCAATGTCTGTCTAAGTCAGAGACCATGTTGTAGATAGATGAGACTAACGAT TTTTCAGATGTGAAGTTATGGGCCCAGACCTTAGGCCGAAGCCTGATCTTAGCTCAAGGCCTAGT CTCAGGCTAAATTCAGACCTTAGGCCAAAGGTCAAAGCCAAGAACATATGATGGGAGCAGGTGCC TATAAGCGCCTACGTTAGTATCGATTCGTACTTTCAGGCCTATTAATTATTTATGCCTTATGGGA CTAGAACGGTCTAATCCGGCCAAGGTTAGTGGCCTGCTCATTGGCCTAAACTCACAAATGCATAG TTATAGAAGAACAACTGTTCCTCCGACATTTCCAAGCCGGGCAGCCTGAACCTATCCTCTTTCTT CACTTTTTCAAAAACCCGAAAAGCTGTCCGAATTCCCATATGATCTCCGGCGATCTCGTATCTAC AGTGGGTCCCGTTCATCTAAAATGTGCAATTTTAATTGTCGAAGA Found at i:2561700 original size:39 final size:39 Alignment explanation
Indices: 2561638--2561811 Score: 150 Period size: 39 Copynumber: 4.4 Consensus size: 39 2561628 CCGAGCCGGG * * 2561638 CTGAGCCCACAGTGAGCCCACAAGTCAGTCTTACCACAAA 1 CTGAGCTC-CAGTGAGCCCACAAGTCCGTCTTACCACAAA * * * ** 2561678 CTGAGCTCCAGTGAACCTACAAGTCCGTCTTATCACAGG 1 CTGAGCTCCAGTGAGCCCACAAGTCCGTCTTACCACAAA * * * ** **** 2561717 CTCAGCTCCAGTGGGCCCACAATTCCGTCTTATTATGGG 1 CTGAGCTCCAGTGAGCCCACAAGTCCGTCTTACCACAAA ** * * * ** **** 2561756 CTGAGGCCCAGTGAGCCCATAAGTGCGGCTTATTATGTG 1 CTGAGCTCCAGTGAGCCCACAAGTCCGTCTTACCACAAA 2561795 CTGAGCTCCAGTGAGCC 1 CTGAGCTCCAGTGAGCC 2561812 GGGCTACGCA Statistics Matches: 108, Mismatches: 26, Indels: 1 0.80 0.19 0.01 Matches are distributed among these distances: 39 101 0.94 40 7 0.06 ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22 Consensus pattern (39 bp): CTGAGCTCCAGTGAGCCCACAAGTCCGTCTTACCACAAA Left flanking sequence: Indices 2561138 -- 2561637 TCGATCTCCGGGATCATTTTCACGAGATCCGTCAGATTTCTCGATTTCGACATGTTATCATTGTC CAGCGCCAGGTTTCTATAGTCGGCAAGCTCAAAAATTGGTTGGAAATTGAAAAAAAATAAACTGG ATTTAGGGAAAAAAATACCGTGGAGAAGTTGGCTTCAAGTTGAACAAGCTCTGCGAATTCCTTGT CATAGATCGTTTCGTTGAGCTCCCGGTTTTCAAGTTTTAGCAGGCGTCGGAGCATCTGAAAATTG AAGTTTCCTGCCTGGGCCTCGTTCTAGGCCGCATGATAAGCTTGCCTAGAGTAGCCTGGCCTGAC AAAAGTCCACGGGCCCAGCAAGAGTCCCTAGCTCAGGTTCACCTAGTATCTTTCAGGCCGTACGA CCGAGTGGGCCTAGGATCAGCCAATTTTTCTCAGGTTTATCTACGGCTAGAGCTCTACGTTGAAG CCTAGCTCAGTATATAATCTAGTCTCCATAAGCTCCCGAGCCGGG Right flanking sequence: Indices 2561812 -- 2562311 GGGCTACGCAAACAGTGGGCCTACAGGCCCGTCTTATTATGGGCGGAGCCCCAGTGGGCCGGGCT ACGCAAACGGTGGGCCCACAATTTCACCTTGCCACGGACTAAGCCCACAGTGGGCCCACAAGTCT GTCTAACCACGGGCTGAACTTCAGACCCATCTGACCTAACTCTGATCTACAATGCTCGGCGGGCT TTACTTGGCCCAAACGGGCTTGTCACAGACCCTGTCCTCACCGAACCCAGCTAGCCCAGACCCCT CCGAAATTCTTACAAAAGCCACCGAATCCTTATAAATCGAGATTCCCATCGCCCAATTGTACACC CAATGAGGTCCCGGCGACACGTAAAGCCTGTTCACAGACTTGTTTCCTTCGATAGCGGCGTACGG CTCTACTGACAAGAATCCCATTCGATTACGGTTGATCGAAAGGTACTTGGCAAGCATATCTGGAA AAAAAAGGAAAAATTGGAAGCCTCTAGGTGGGGTCCTACCACTCA Found at i:2561922 original size:60 final size:60 Alignment explanation
Indices: 2561798--2561932 Score: 142 Period size: 60 Copynumber: 2.2 Consensus size: 60 2561788 TTATGTGCTG * * * * ** ** * * * 2561798 AGCTCCAGTGAGCCGGGCTACGCAAACAGTGGGCCTACAGGCCCGTCTTATTATGGGCGG 1 AGCCCCAGTGGGCCGGGCTACGCAAACAGTGGGCCCACAAGCCCACCTTACCACGGACGA * *** * * 2561858 AGCCCCAGTGGGCCGGGCTACGCAAACGGTGGGCCCACAATTTCACCTTGCCACGGACTA 1 AGCCCCAGTGGGCCGGGCTACGCAAACAGTGGGCCCACAAGCCCACCTTACCACGGACGA 2561918 AGCCCACAGTGGGCC 1 AGCCC-CAGTGGGCC 2561933 CACAAGTCTG Statistics Matches: 57, Mismatches: 17, Indels: 1 0.76 0.23 0.01 Matches are distributed among these distances: 60 48 0.84 61 9 0.16 ACGTcount: A:0.21, C:0.33, G:0.31, T:0.16 Consensus pattern (60 bp): AGCCCCAGTGGGCCGGGCTACGCAAACAGTGGGCCCACAAGCCCACCTTACCACGGACGA Left flanking sequence: Indices 2561298 -- 2561797 GGCTTCAAGTTGAACAAGCTCTGCGAATTCCTTGTCATAGATCGTTTCGTTGAGCTCCCGGTTTT CAAGTTTTAGCAGGCGTCGGAGCATCTGAAAATTGAAGTTTCCTGCCTGGGCCTCGTTCTAGGCC GCATGATAAGCTTGCCTAGAGTAGCCTGGCCTGACAAAAGTCCACGGGCCCAGCAAGAGTCCCTA GCTCAGGTTCACCTAGTATCTTTCAGGCCGTACGACCGAGTGGGCCTAGGATCAGCCAATTTTTC TCAGGTTTATCTACGGCTAGAGCTCTACGTTGAAGCCTAGCTCAGTATATAATCTAGTCTCCATA AGCTCCCGAGCCGGGCTGAGCCCACAGTGAGCCCACAAGTCAGTCTTACCACAAACTGAGCTCCA GTGAACCTACAAGTCCGTCTTATCACAGGCTCAGCTCCAGTGGGCCCACAATTCCGTCTTATTAT GGGCTGAGGCCCAGTGAGCCCATAAGTGCGGCTTATTATGTGCTG Right flanking sequence: Indices 2561933 -- 2562432 CACAAGTCTGTCTAACCACGGGCTGAACTTCAGACCCATCTGACCTAACTCTGATCTACAATGCT CGGCGGGCTTTACTTGGCCCAAACGGGCTTGTCACAGACCCTGTCCTCACCGAACCCAGCTAGCC CAGACCCCTCCGAAATTCTTACAAAAGCCACCGAATCCTTATAAATCGAGATTCCCATCGCCCAA TTGTACACCCAATGAGGTCCCGGCGACACGTAAAGCCTGTTCACAGACTTGTTTCCTTCGATAGC GGCGTACGGCTCTACTGACAAGAATCCCATTCGATTACGGTTGATCGAAAGGTACTTGGCAAGCA TATCTGGAAAAAAAAGGAAAAATTGGAAGCCTCTAGGTGGGGTCCTACCACTCAAATCGAACTTC TCCTCATTCCAATTCGGATCGATCATCGGAAAACCGCCACGCTCTTCAATATCATTCCGTAAATC TTGAAATGTGTCCTCATCCATCTCTTTTCGATCCAGACAGCTTTT Found at i:2563360 original size:13 final size:13 Alignment explanation
Indices: 2563342--2563369 Score: 42 Period size: 13 Copynumber: 2.2 Consensus size: 13 2563332 GCTCAGTGTA * * 2563342 AAATTTTATATCC 1 AAATTTAACATCC 2563355 AAATTTAACATCC 1 AAATTTAACATCC 2563368 AA 1 AA 2563370 CTCACCAAAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36 Consensus pattern (13 bp): AAATTTAACATCC Left flanking sequence: Indices 2562842 -- 2563341 AAGGGCGCGCAGAGAGCAGAGAGTATGGGAGGAGGGGAGACGCAGGTTGTGGTGCTCTGCGTCTC CCCTCCCTCTACACTCTCTCCCTCTCAACTTTGACCGCTCGTATCTCTGTAACCGGGAGAGCTAT CAAAAAATTTCCAACTAACAAAATGCTCAGCGCAAAATTTTGCGTTTGTATACGTATTTATTTAT TTTACCCAATTTGTATTTTCTTAGATTTCAACTGAAACGTCTTATTCCAATATTCAGATTGTAGA TCACAAAATTTTGAGTATTTTGTCAGATGGAAGTTTTTCGATAGCTCTAACCGTTGCAGAGATAG AGGCTGTTAAAGAGAAGGGCGCGCAGAGAGCAGAGAGTGCGGGAGGAGGAGAGACGCAGCGCAAT GTCTGCGTCTCCCCTCCCTCCACACTCTCTCCCTTTCAACTTTGACCGCCCGTATCTCTGCAACG GTTAGAGCTATCAAAAAATTTCCAACTAACAAAATGCTCAGTGTA Right flanking sequence: Indices 2563370 -- 2563869 CTCACCAAAAACCTGATACAAAAGCTGTTTGTACTGCACATAACCCCAGCTGTTATCATCCATCA CGTGCTCCGAGTAACGTCCGCAAGTGTGCTCGAAGAAGTCCTCACAAGGGTCCACACTGGCATTT TGGTAGTTTTTCTGGAATTTAGGGGTTACTGTAGTACTGTAGGAGGGTTTGTACACACTTACAAT CATCGCCAAAACACCCACGCACTCCTTTGACCAGCAAGTCTCTGGGCTCCCATTCGGAGCATTTG AGCTCCCACTGGGCCATAAACTGGCCCAAAGGGCTATCATCAGGGCCATGATTACCAGTGATAAG ACGATAACTGTCAGGTGGAACCGCTTTTCGGATACCGTAACCTTTTGGATTTTCTCCTTTGCATT TTCCAGCGCCGCTTCTTGGTTTCTTTGGGTCTCCTCACGGCTTTGGTCGGTGGTGAGAAGCTGGA TTTGGTAGGGATTACTGTAATTTGACCTATTTTTTTTTTGATTGG Found at i:2565014 original size:11 final size:11 Alignment explanation
Indices: 2564990--2565014 Score: 36 Period size: 11 Copynumber: 2.3 Consensus size: 11 2564980 GAATATTTGA * 2564990 ATTTAAATCCC 1 ATTAAAATCCC * 2565001 ATTAAAATCGC 1 ATTAAAATCCC 2565012 ATT 1 ATT 2565015 TTTCCTTGTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36 Consensus pattern (11 bp): ATTAAAATCCC Left flanking sequence: Indices 2564490 -- 2564989 TCGGTGTTTCTGGGGGTACTGTAGTCGGTGTTTGCGTACTTTTGATGCTACCGTAACCCGGGAAA TTTTTAAATTGAGCTAGAAAGCTCTAGTTTTCGATTTTCCGCCTGAAATTTCGCGGGGAATTCGA ATTTGAACTCGGAATTGGGAAATTTCCAGCGTCTTGAAACACCGTCATGATAATTGCAGAAATTG AAAATTTCCGGCAAATCGGCAAACCGGCAATTTGCCGATTTGCCGATTTGTCGACAAATCAATTT GCCGAGCGGAAATTGCCGCCCACCCCTGGTTCAAACACTGGAAATTGGACCGGAAATCAGGAATT TTTTTCCAGATCTGCAAAATAATGGATTTCAGAGTGTTTTCTATGACCTATTTATTTATTTTTCG AGTTTCTTTTATTTTTTGGAGATTTACAGGTTTGTGCACACATTTTCATCTCTTTCAGGTTGCCA GAATTGATTTTTATACGATTTTCACTTTTTTTTCTGAATATTTGA Right flanking sequence: Indices 2565015 -- 2565514 TTTCCTTGTTTTTTCTCTTCTGAAAAATATATTAATAAAATTATATTAATTCCACTTGTCCGAGA GGAGTACACGACAAAAGTCCGCAAGATGGCGTGACGGTGTTTGCGTACTTTTGCAATATTCGAAT TTATTTTTTTTAATGGTTTTTTTTTTATTTTCTTCGGTTTTTAGCGTTTTTCTTCGGATTTCAGT GATTTTTTCGATGAAATATTCTGTTTTTTGCTCAAAAATTCAATTTTTAAGGTTTCAAACTTTCA GAATGACAAACGAAGAGCCAAAATCTCCCGAAAAGGTGGAACGCCGGCGGTCAACGCAGGAAGAT TCGGAAAAAGACAAGAAACGTTCGAGTTGGTGGATTTTAATCGATTTTTCTGGAAAAAAGCGGGG TTTTTTTTGCAGGAGACGATAGAAAAACCGAGAAAAGGACTCACGATAGGGATAGGAAGAGGAAT AGGAGCCGATCGAGATCTAGATCAAGGTAAAATTGGAATTTATTC Found at i:2565059 original size:14 final size:14 Alignment explanation
Indices: 2565037--2565064 Score: 49 Period size: 14 Copynumber: 2.0 Consensus size: 14 2565027 TTCTCTTCTG 2565037 AAAAATATATTAAT 1 AAAAATATATTAAT * 2565051 AAAATTATATTAAT 1 AAAAATATATTAAT 2565065 TCCACTTGTC Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (14 bp): AAAAATATATTAAT Left flanking sequence: Indices 2564537 -- 2565036 CTACCGTAACCCGGGAAATTTTTAAATTGAGCTAGAAAGCTCTAGTTTTCGATTTTCCGCCTGAA ATTTCGCGGGGAATTCGAATTTGAACTCGGAATTGGGAAATTTCCAGCGTCTTGAAACACCGTCA TGATAATTGCAGAAATTGAAAATTTCCGGCAAATCGGCAAACCGGCAATTTGCCGATTTGCCGAT TTGTCGACAAATCAATTTGCCGAGCGGAAATTGCCGCCCACCCCTGGTTCAAACACTGGAAATTG GACCGGAAATCAGGAATTTTTTTCCAGATCTGCAAAATAATGGATTTCAGAGTGTTTTCTATGAC CTATTTATTTATTTTTCGAGTTTCTTTTATTTTTTGGAGATTTACAGGTTTGTGCACACATTTTC ATCTCTTTCAGGTTGCCAGAATTGATTTTTATACGATTTTCACTTTTTTTTCTGAATATTTGAAT TTAAATCCCATTAAAATCGCATTTTTCCTTGTTTTTTCTCTTCTG Right flanking sequence: Indices 2565065 -- 2565564 TCCACTTGTCCGAGAGGAGTACACGACAAAAGTCCGCAAGATGGCGTGACGGTGTTTGCGTACTT TTGCAATATTCGAATTTATTTTTTTTAATGGTTTTTTTTTTATTTTCTTCGGTTTTTAGCGTTTT TCTTCGGATTTCAGTGATTTTTTCGATGAAATATTCTGTTTTTTGCTCAAAAATTCAATTTTTAA GGTTTCAAACTTTCAGAATGACAAACGAAGAGCCAAAATCTCCCGAAAAGGTGGAACGCCGGCGG TCAACGCAGGAAGATTCGGAAAAAGACAAGAAACGTTCGAGTTGGTGGATTTTAATCGATTTTTC TGGAAAAAAGCGGGGTTTTTTTTGCAGGAGACGATAGAAAAACCGAGAAAAGGACTCACGATAGG GATAGGAAGAGGAATAGGAGCCGATCGAGATCTAGATCAAGGTAAAATTGGAATTTATTCGAAAA ATGTGGTAATTTATCGATTTTTAGGTCCCCAAAGCGCTCGAGACG Found at i:2565215 original size:20 final size:20 Alignment explanation
Indices: 2565171--2565219 Score: 63 Period size: 20 Copynumber: 2.5 Consensus size: 20 2565161 TTTTTTTTTT * * 2565171 ATTTTCTTCGGTTTTTAGCG 1 ATTTTCTTCGGATTTCAGCG * * 2565191 TTTTTCTTCGGATTTCAGTG 1 ATTTTCTTCGGATTTCAGCG 2565211 ATTTT-TTCG 1 ATTTTCTTCG 2565220 ATGAAATATT Statistics Matches: 24, Mismatches: 5, Indels: 1 0.80 0.17 0.03 Matches are distributed among these distances: 19 4 0.17 20 20 0.83 ACGTcount: A:0.10, C:0.14, G:0.18, T:0.57 Consensus pattern (20 bp): ATTTTCTTCGGATTTCAGCG Left flanking sequence: Indices 2564671 -- 2565170 AATTGCAGAAATTGAAAATTTCCGGCAAATCGGCAAACCGGCAATTTGCCGATTTGCCGATTTGT CGACAAATCAATTTGCCGAGCGGAAATTGCCGCCCACCCCTGGTTCAAACACTGGAAATTGGACC GGAAATCAGGAATTTTTTTCCAGATCTGCAAAATAATGGATTTCAGAGTGTTTTCTATGACCTAT TTATTTATTTTTCGAGTTTCTTTTATTTTTTGGAGATTTACAGGTTTGTGCACACATTTTCATCT CTTTCAGGTTGCCAGAATTGATTTTTATACGATTTTCACTTTTTTTTCTGAATATTTGAATTTAA ATCCCATTAAAATCGCATTTTTCCTTGTTTTTTCTCTTCTGAAAAATATATTAATAAAATTATAT TAATTCCACTTGTCCGAGAGGAGTACACGACAAAAGTCCGCAAGATGGCGTGACGGTGTTTGCGT ACTTTTGCAATATTCGAATTTATTTTTTTTAATGGTTTTTTTTTT Right flanking sequence: Indices 2565220 -- 2565719 ATGAAATATTCTGTTTTTTGCTCAAAAATTCAATTTTTAAGGTTTCAAACTTTCAGAATGACAAA CGAAGAGCCAAAATCTCCCGAAAAGGTGGAACGCCGGCGGTCAACGCAGGAAGATTCGGAAAAAG ACAAGAAACGTTCGAGTTGGTGGATTTTAATCGATTTTTCTGGAAAAAAGCGGGGTTTTTTTTGC AGGAGACGATAGAAAAACCGAGAAAAGGACTCACGATAGGGATAGGAAGAGGAATAGGAGCCGAT CGAGATCTAGATCAAGGTAAAATTGGAATTTATTCGAAAAATGTGGTAATTTATCGATTTTTAGG TCCCCAAAGCGCTCGAGACGGGATAAAAAAGAGGAAAAGCAAGAGCAAGAGGAAGAGGATGGCGA GGTACATTGAAAATTGGAAAAATCTCGAAAAAATCGATTTTTTCAGTAAAATTCTCCAAACTCGG TTTTTTTTCGCTAAAAATCTAATTTTCACCGAAAAATTGATCCAA Found at i:2566235 original size:39 final size:39 Alignment explanation
Indices: 2566157--2566234 Score: 98 Period size: 40 Copynumber: 2.0 Consensus size: 39 2566147 GTAGCTTTCA * * * * ** 2566157 AACGGAAAATTTCAATTTTTCCGTAGAAATTCCATTTTT 1 AACGCAAAATTACAATTTTTCCATAAAAATCACATTTTT * 2566196 AACGCAAAATTGACAATTTTTCGATAAAAATCACATTTT 1 AACGCAAAATT-ACAATTTTTCCATAAAAATCACATTTT 2566235 ATGCAAAAAT Statistics Matches: 31, Mismatches: 7, Indels: 1 0.79 0.18 0.03 Matches are distributed among these distances: 39 10 0.32 40 21 0.68 ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37 Consensus pattern (39 bp): AACGCAAAATTACAATTTTTCCATAAAAATCACATTTTT Left flanking sequence: Indices 2565657 -- 2566156 AAAATTCTCCAAACTCGGTTTTTTTTCGCTAAAAATCTAATTTTCACCGAAAAATTGATCCAAAA CCACGATTTTCGGGAAAATTCCAAAAAATTCGAATTTTTCCATTTAAAAAACCATTAAAAAACAG GAATTTTTCGCTAAAAATAGCATTTTTCGGAAGAATTGTCCAAAAAAAAAAAAAGGTTTCTCGTA TAAAATACACTCAAAATAATAAAACTGCGTGGCGTGTACTGCAGAAAACCTAATATTTAGGCCCC GCCTTTTAATCGTCCACTCACGGGGAAAACGCAAAAAGCGGTACCCCAGGCAATATCAGCCGCCG ACATCATTCGAGGTCCGCGCACCACACTATTTTTTTCACTGTTGGCGTGGCGAGCTGTCCCCCCT CCCCTATTTTTGTCTTTTCCCCGTGAGTGGACGATTAAAAGGCGGGGCCTAAATATTAGGTTTTC TGCAGTACACGCCACGCAGTTTTATTATTTTGAGTGTAGCTTTCA Right flanking sequence: Indices 2566235 -- 2566734 ATGCAAAAATTCCGCAGAAAGACCGATTTTTTCGTAGAAAAAGCTTTTTTTTGACCAATTTTTCG GCTGAAAAATCCAATTTTCGACACAAATAAATTGCCAGAAACAATTTTTAGAGTTTTTGGAAGGA AATTCTGTGATTTTCGAATTTTTGGGTAGAAAATTGAAAATTTCGGGAAAAAATGAGGATTTTTC GGAATTTTGGGACTTTTTAAATCGATTTTCCGATTAAAATTGCATTTTTTACGGAAAAATCAGTC CAAAGCATATTATTTTTAATAAAAAAAATCAATTTTTTTCAGCAAAGTTCTCCAAACTCGGTTTT TTTCGCTAAAAATCTAATTTTCGACCGAAAAATTGATCCAAAACCACAATTTTCGGGAAAATTCC AAAAAATTCGAATTTTTCCTTCAAAAAAACCATTTTTTAAGACTAAAATTCCTTAAAATAATAGG AATTTTTCGCTAAAAATCCTTTTTTTTTTCGCTTTTTGTATAAAA Found at i:2569581 original size:11 final size:11 Alignment explanation
Indices: 2569565--2569588 Score: 48 Period size: 11 Copynumber: 2.2 Consensus size: 11 2569555 ATTTCCTGTG 2569565 TTTCAGACATT 1 TTTCAGACATT 2569576 TTTCAGACATT 1 TTTCAGACATT 2569587 TT 1 TT 2569589 CTCTCTGAAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50 Consensus pattern (11 bp): TTTCAGACATT Left flanking sequence: Indices 2569065 -- 2569564 ATCCATCATTGGAGGATATTAAATATGTGCTAAAGCCGACGTATACCAAAGAAATGATTGCTTCA ATTGATAAGCAGGTAGAAAATGGAAAATTTCAGAAAATGAGATTTTCCTGGAAAAAAAACAACAC AAAGTGCTTTTTTTGTGCTAAAAAATGGAAAATTTCAGCTTTTTCTCGGAAAAAAATGAATAAAA ATGAGATTTTCTTGAAAAAAAAACGACAAAAAAGTGCTTTTTGATCTTTTTCTCTTGAAAAATCG CATTTTTTCTGGAAAAATTGGCCTAAAAACTTGATTTCCAGAGCGATAATCAACTATTTATTGCA ATTTTGAGTAGATTTTCCTCGAAAAATCGATAATTTTCATGTAAAAATGGTTGAAAAACCGAATT TCAGTGCAGAAAAATGAAAAATTAGATTTAATTGAAAAAATCAACCTAAAAAGTGATAAAAAACG CGATTTTTTGCTCATTTTTCCAAAAAAAATCGCTAATTTCCTGTG Right flanking sequence: Indices 2569589 -- 2570088 CTCTCTGAAAAATTGGAATTTTTAGCTATTTTACCCCATGAAAAATGAGATTTCCCTCCACTGTT TACCTGGAAAAATCAATGTTTTTCTGTTTTTTTTCCCCGAAATAATGGCATTTTCTTGTGAAAAT CGACCAAAAAGTGAATTTTTAGGGTGAAAATGAGCAATTTAGCGCAATTTTGAGCAGATTTTTCC GAAAAATAAGCTAAATTTCATGTGGAAATTGTTCAAAAACCGAAATTTAGAGCAGAAAATGAGAT TTTCTTGACAAATCATGTAAAATCATGTGTGAAAAATTGCATTTTTTTTCAAATGCAAAAATTGA AAATTTCAGCTTTTCTCCCTCTTAAAAACTCACATTTTTTGCAGTCAAAAATGGTCCGCGCCTAC GACGATTCGACCTACTTTCCGGGCGTTGTTGGACTCAACAATATCAAGGCAAACGACTACTGTAA CGCTATACTTCAGGTGTGTGAAAAAATCGATGCAATTGGCCTGAA Found at i:2570164 original size:24 final size:23 Alignment explanation
Indices: 2570096--2571129 Score: 1133 Period size: 24 Copynumber: 46.3 Consensus size: 23 2570086 GAAAATCTGG * *** 2570096 AAAAACCAGC-AAAAATCTAAAA 1 AAAAACCGGCAAAAAATCTTTTA * * 2570118 AAAAATCGGC-AAAAATC---TG 1 AAAAACCGGCAAAAAATCTTTTA * 2570137 AAAAACCGGCAAAAAATCTTTTTT 1 AAAAACCGGCAAAAAATC-TTTTA * 2570161 AAAAACCGGCAAAAAAATCTTTTG 1 AAAAACCGGC-AAAAAATCTTTTA 2570185 AAAAACCGGCAAAAAATCTTTTA 1 AAAAACCGGCAAAAAATCTTTTA * * 2570208 AAAAACCGGC-AATAATCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA * 2570230 AAAAACCGGC-AAAAATCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA 2570252 AAAAACCGGCAAAAAATC---TA 1 AAAAACCGGCAAAAAATCTTTTA 2570272 AAAAACCGGC-AAAAATC---TA 1 AAAAACCGGCAAAAAATCTTTTA 2570291 AAAAACCGGCAAAAAATCTTTTA 1 AAAAACCGGCAAAAAATCTTTTA * * * 2570314 AAAAACCGTCAAAAATTCTTTAAAA 1 AAAAACCGGCAAAAAATCTTT--TA * 2570339 AAAAACCGGCAAAAAATCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA * 2570362 AAAAACCGGCAAAAAATCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA ** 2570385 AAAAACCGGC-AAAAATC-TAAA 1 AAAAACCGGCAAAAAATCTTTTA * 2570406 AAAAACCGGCAAAAAATCTTTTTT 1 AAAAACCGGCAAAAAATC-TTTTA 2570430 AAAAACCGGCAAAAAATCTTTTAA 1 AAAAACCGGCAAAAAATCTTTT-A * 2570454 AAAAACCGGCAAAAAATCTTTAAAA 1 AAAAACCGGCAAAAAATCTTT--TA 2570479 AAAAACCGGCAAAAAATCTTTTTAA 1 AAAAACCGGCAAAAAATC-TTTT-A * 2570504 AAAAACCGGC-AAAAATC---TG 1 AAAAACCGGCAAAAAATCTTTTA * 2570523 AAAAACCGGCAAAAATTC-TTTA 1 AAAAACCGGCAAAAAATCTTTTA * 2570545 AAAAACCGGCAAAACATC---TA 1 AAAAACCGGCAAAAAATCTTTTA 2570565 AAAAACCGGCAAAAAATCTTTTTA 1 AAAAACCGGCAAAAAATC-TTTTA * * 2570589 AAAAACCGGCAAAATAATCTCTAA 1 AAAAACCGGCAAAA-AATCTTTTA * 2570613 AAAAACCGGCAAAGAAATCTTTAA 1 AAAAACCGGCAAA-AAATCTTTTA * 2570637 AAAAACCGGCAAAACATC---TA 1 AAAAACCGGCAAAAAATCTTTTA ** 2570657 AAAAACCGGCAAAAAAAATCTTTA 1 AAAAACCGGCAAAAAATCT-TTTA 2570681 AAAAACCGGCAAAAAATC---TA 1 AAAAACCGGCAAAAAATCTTTTA * 2570701 AAAAACCGGCAAAACATC---TA 1 AAAAACCGGCAAAAAATCTTTTA 2570721 AAAAACCGGCAAAAAATCTTTTTA 1 AAAAACCGGCAAAAAATC-TTTTA * * 2570745 AAAAACCGGCAAAATAATCTCTAA 1 AAAAACCGGCAAAA-AATCTTTTA * 2570769 AAAAACCGGCAAAAAAATCTTTTG 1 AAAAACCGGC-AAAAAATCTTTTA * 2570793 AAAAACCGGCAAAAAAATCTTTTG 1 AAAAACCGGC-AAAAAATCTTTTA * 2570817 AAAAACCGGC-AAAAATC---TG 1 AAAAACCGGCAAAAAATCTTTTA * * 2570836 AAAAACCGG--AAAAA-CATCTA 1 AAAAACCGGCAAAAAATCTTTTA 2570856 AAAAACCGGCAAAAAATC---TA 1 AAAAACCGGCAAAAAATCTTTTA * * * 2570876 AAAAACCGACAAAAAGTCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA * 2570899 AAAAACCGGCAAAAAAATCTTTAA 1 AAAAACCGGC-AAAAAATCTTTTA * 2570923 AAAAACCGGC-AAAAATC---TG 1 AAAAACCGGCAAAAAATCTTTTA * 2570942 AAAAACCGGCAAAAAAATCTTTTG 1 AAAAACCGGC-AAAAAATCTTTTA ** 2570966 AAAAACCGGC-AAAAATC-TGAA 1 AAAAACCGGCAAAAAATCTTTTA * 2570987 AAAAACCGGCAAAAAATCTTTTTT 1 AAAAACCGGCAAAAAATC-TTTTA * 2571011 AAAAACCGGC-AAAAATCTTTTG 1 AAAAACCGGCAAAAAATCTTTTA * 2571033 AAAAACCGGCAAAAAAATCTTTTG 1 AAAAACCGGC-AAAAAATCTTTTA * 2571057 AAAAACCGGCAAAAAATCTTTAA 1 AAAAACCGGCAAAAAATCTTTTA 2571080 AAAAACCGGC-AAAAATC---TA 1 AAAAACCGGCAAAAAATCTTTTA * 2571099 AAAAACCGGCAAAATAATCTTTAA 1 AAAAACCGGCAAAA-AATCTTTTA 2571123 AAAAACC 1 AAAAACC 2571130 TTTTTTTTTT Statistics Matches: 875, Mismatches: 72, Indels: 128 0.81 0.07 0.12 Matches are distributed among these distances: 17 1 0.00 18 5 0.01 19 70 0.08 20 136 0.16 21 33 0.04 22 141 0.16 23 130 0.15 24 285 0.33 25 71 0.08 26 3 0.00 ACGTcount: A:0.53, C:0.18, G:0.10, T:0.18 Consensus pattern (23 bp): AAAAACCGGCAAAAAATCTTTTA Left flanking sequence: Indices 2569596 -- 2570095 AAAAATTGGAATTTTTAGCTATTTTACCCCATGAAAAATGAGATTTCCCTCCACTGTTTACCTGG AAAAATCAATGTTTTTCTGTTTTTTTTCCCCGAAATAATGGCATTTTCTTGTGAAAATCGACCAA AAAGTGAATTTTTAGGGTGAAAATGAGCAATTTAGCGCAATTTTGAGCAGATTTTTCCGAAAAAT AAGCTAAATTTCATGTGGAAATTGTTCAAAAACCGAAATTTAGAGCAGAAAATGAGATTTTCTTG ACAAATCATGTAAAATCATGTGTGAAAAATTGCATTTTTTTTCAAATGCAAAAATTGAAAATTTC AGCTTTTCTCCCTCTTAAAAACTCACATTTTTTGCAGTCAAAAATGGTCCGCGCCTACGACGATT CGACCTACTTTCCGGGCGTTGTTGGACTCAACAATATCAAGGCAAACGACTACTGTAACGCTATA CTTCAGGTGTGTGAAAAAATCGATGCAATTGGCCTGAAAATCTGG Right flanking sequence: Indices 2571130 -- 2571629 TTTTTTTTTTTTTAAAATTATCCAGACTCCGCCCCTTTAATGGTACACTGGAACTTTTCGAAAAA AAAAATCTGAAAATTTAAAAAATTTTTTAAAAATTTTTTATAATAAAAAAAAGTATTAAAAATTC TCTCCAGACTCCGCCCATTTAATGGTTCAACCCTATAAATTTCTACAAAATTTCAACCCTATTTT CGCGGCTTGAAAATGTGATTTCTAGGCCGCCAAAAAACTTCGCAATTTTTCTCAATTTCAGGCTC TGTCAGCGGTCCGTCCACTGCGTAATTGGTTTCTAAAAGAATCAAATTACACTTCAATCAAACGT CCACCAGGTGATAAGCTCACATTGCTCCCACAACGCTTTGGAGAGCTCATCAGAAAGCTATGGAA TCCACGTGCACTCCGTACACACGTCTCACCTCATGAAATGCTTCAGGCGGTCGTCGTGTGCTCCA ACAAGAAATTTCAATTTATTAAGCAAAATGATGCGGCGGATTTTA Found at i:2571132 original size:12 final size:12 Alignment explanation
Indices: 2571098--2571132 Score: 35 Period size: 12 Copynumber: 2.9 Consensus size: 12 2571088 GCAAAAATCT *** 2571098 AAAAAACCGGCA 1 AAAAAACCTTTA * * 2571110 AAATAATCTTTA 1 AAAAAACCTTTA 2571122 AAAAAACCTTT 1 AAAAAACCTTT 2571133 TTTTTTTTTT Statistics Matches: 16, Mismatches: 7, Indels: 0 0.70 0.30 0.00 Matches are distributed among these distances: 12 16 1.00 ACGTcount: A:0.54, C:0.17, G:0.06, T:0.23 Consensus pattern (12 bp): AAAAAACCTTTA Left flanking sequence: Indices 2570598 -- 2571097 CAAAATAATCTCTAAAAAAACCGGCAAAGAAATCTTTAAAAAAACCGGCAAAACATCTAAAAAAC CGGCAAAAAAAATCTTTAAAAAACCGGCAAAAAATCTAAAAAACCGGCAAAACATCTAAAAAACC GGCAAAAAATCTTTTTAAAAAACCGGCAAAATAATCTCTAAAAAAACCGGCAAAAAAATCTTTTG AAAAACCGGCAAAAAAATCTTTTGAAAAACCGGCAAAAATCTGAAAAACCGGAAAAACATCTAAA AAACCGGCAAAAAATCTAAAAAACCGACAAAAAGTCTTTTGAAAAACCGGCAAAAAAATCTTTAA AAAAACCGGCAAAAATCTGAAAAACCGGCAAAAAAATCTTTTGAAAAACCGGCAAAAATCTGAAA AAAACCGGCAAAAAATCTTTTTTAAAAACCGGCAAAAATCTTTTGAAAAACCGGCAAAAAAATCT TTTGAAAAACCGGCAAAAAATCTTTAAAAAAACCGGCAAAAATCT Right flanking sequence: Indices 2571133 -- 2571632 TTTTTTTTTTAAAATTATCCAGACTCCGCCCCTTTAATGGTACACTGGAACTTTTCGAAAAAAAA AATCTGAAAATTTAAAAAATTTTTTAAAAATTTTTTATAATAAAAAAAAGTATTAAAAATTCTCT CCAGACTCCGCCCATTTAATGGTTCAACCCTATAAATTTCTACAAAATTTCAACCCTATTTTCGC GGCTTGAAAATGTGATTTCTAGGCCGCCAAAAAACTTCGCAATTTTTCTCAATTTCAGGCTCTGT CAGCGGTCCGTCCACTGCGTAATTGGTTTCTAAAAGAATCAAATTACACTTCAATCAAACGTCCA CCAGGTGATAAGCTCACATTGCTCCCACAACGCTTTGGAGAGCTCATCAGAAAGCTATGGAATCC ACGTGCACTCCGTACACACGTCTCACCTCATGAAATGCTTCAGGCGGTCGTCGTGTGCTCCAACA AGAAATTTCAATTTATTAAGCAAAATGATGCGGCGGATTTTATGC Found at i:2571226 original size:11 final size:11 Alignment explanation
Indices: 2571208--2571234 Score: 47 Period size: 11 Copynumber: 2.5 Consensus size: 11 2571198 AATCTGAAAA * 2571208 TTTAAAAAATT 1 TTTTAAAAATT 2571219 TTTTAAAAATT 1 TTTTAAAAATT 2571230 TTTTA 1 TTTTA 2571235 TAATAAAAAA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 11 15 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (11 bp): TTTTAAAAATT Left flanking sequence: Indices 2570708 -- 2571207 GGCAAAACATCTAAAAAACCGGCAAAAAATCTTTTTAAAAAACCGGCAAAATAATCTCTAAAAAA ACCGGCAAAAAAATCTTTTGAAAAACCGGCAAAAAAATCTTTTGAAAAACCGGCAAAAATCTGAA AAACCGGAAAAACATCTAAAAAACCGGCAAAAAATCTAAAAAACCGACAAAAAGTCTTTTGAAAA ACCGGCAAAAAAATCTTTAAAAAAACCGGCAAAAATCTGAAAAACCGGCAAAAAAATCTTTTGAA AAACCGGCAAAAATCTGAAAAAAACCGGCAAAAAATCTTTTTTAAAAACCGGCAAAAATCTTTTG AAAAACCGGCAAAAAAATCTTTTGAAAAACCGGCAAAAAATCTTTAAAAAAACCGGCAAAAATCT AAAAAACCGGCAAAATAATCTTTAAAAAAACCTTTTTTTTTTTTTAAAATTATCCAGACTCCGCC CCTTTAATGGTACACTGGAACTTTTCGAAAAAAAAAATCTGAAAA Right flanking sequence: Indices 2571235 -- 2571734 TAATAAAAAAAAGTATTAAAAATTCTCTCCAGACTCCGCCCATTTAATGGTTCAACCCTATAAAT TTCTACAAAATTTCAACCCTATTTTCGCGGCTTGAAAATGTGATTTCTAGGCCGCCAAAAAACTT CGCAATTTTTCTCAATTTCAGGCTCTGTCAGCGGTCCGTCCACTGCGTAATTGGTTTCTAAAAGA ATCAAATTACACTTCAATCAAACGTCCACCAGGTGATAAGCTCACATTGCTCCCACAACGCTTTG GAGAGCTCATCAGAAAGCTATGGAATCCACGTGCACTCCGTACACACGTCTCACCTCATGAAATG CTTCAGGCGGTCGTCGTGTGCTCCAACAAGAAATTTCAATTTATTAAGCAAAATGATGCGGCGGA TTTTATGCTTTTCCTGCTCACAACACTTCATTCGGCTCTGAATGGAACTGACAAGAAGCCGTCGA TCATTTCAAAGTAAAAATTGAGAGAAAAATCTATGAAAAAGCACA Found at