TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10531861 original size:28 final size:28 Alignment explanation
Indices: 10531809--10531864 Score: 77 Period size: 28 Copynumber: 2.0 Consensus size: 28 10531799 GAAGAACGGT * * 10531809 ACTGTGGGAGTACTATGGGAGTACTGTA 1 ACTGAGGGAGTACTATAGGAGTACTGTA * * * 10531837 ACTGAGGGAGTATTGTAGGATTACTGTA 1 ACTGAGGGAGTACTATAGGAGTACTGTA 10531865 GAGTAATGTA Statistics Matches: 23, Mismatches: 5, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 28 23 1.00 ACGTcount: A:0.27, C:0.09, G:0.34, T:0.30 Consensus pattern (28 bp): ACTGAGGGAGTACTATAGGAGTACTGTA Left flanking sequence: Indices 10531309 -- 10531808 ACGATGACGGTGCTCACTGAGACTCATCTTATGACCGGAACCAATCGACGTCTTCCACCAGTTGC CTATGTAAAAGCCGTTGATGTATTCCTCGGTTTCTGCTATCTTCTGGTTATACTGGCGTTGATCG AGTACGCCTGTGTTGCCTACTCAAAAAAGAAGAACGAGGATCGTCGGAGAAGAGAGAAGAAGACG GAGCATAAACCTGCTCCGCCGACACCTGATATTCTTCACGGTAAGTGTGCCTACCTTTAGTTTAC CTACGACTACAGTACATACCTAATACTGAAATTAATTTTTTTGGTAATATAGGAGTACTGTAGTG TTACTGTAGTTTTGGAAAATACGAGTTTTTGTTTTTTGAAGAGATGCTGGATTGGGGTTAGAGCT GAGAGAGAGAGATGAGAGAGAGGGCACCGTAGAAGTACTGCCGGAATACTGTAGGGGTACTGTAG GACTTCTGTAATTTTGGAAATAGTTGTTGTCTTTTGAAGAACGGT Right flanking sequence: Indices 10531865 -- 10532364 GAGTAATGTAGTTTTAGCAAAAATAAATATTGTGTTTAGTGTCGGGGAACTGTACTCCTAAATTA CCCCCACTGTAGGGGTAATATAGAAGTACTGTAGTTTTAACAGAAACTAGCTTTTTTAGCCGCCC ATTTTTTGGCTAAAACCCATTTTTTGAGTTTCTCATGAGAAATTAAATTGAGAAAACTCTTCCAC CAATCCCATTTACCTGTTATATTTCCAGACGTCCGCCTTGCCGAATGCACATGCAACGCGGCTCC AACCTCGATCATCGCCGTCATCAAGCAGTCGAATCGATTCTGTGTCAGTCACAGTCACATTGACA TCGTCAGCCGTGCCGCGTTTCCTCTTGTTGTAAGTGACCGAGATTTTGCATTTTGACAAACTGAC ACACTTATTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATATTGAAACAATTTCC AGTTCATCTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACA Found at i:10532531 original size:14 final size:14 Alignment explanation
Indices: 10532502--10532532 Score: 41 Period size: 14 Copynumber: 2.2 Consensus size: 14 10532492 CCTTTTTTCG * ** 10532502 TTTTTTTTTATTGA 1 TTTATTTTTACGGA 10532516 TTTATTTTTACGGA 1 TTTATTTTTACGGA 10532530 TTT 1 TTT 10532533 TTAGATAATG Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.16, C:0.03, G:0.10, T:0.71 Consensus pattern (14 bp): TTTATTTTTACGGA Left flanking sequence: Indices 10532002 -- 10532501 GGCTAAAACCCATTTTTTGAGTTTCTCATGAGAAATTAAATTGAGAAAACTCTTCCACCAATCCC ATTTACCTGTTATATTTCCAGACGTCCGCCTTGCCGAATGCACATGCAACGCGGCTCCAACCTCG ATCATCGCCGTCATCAAGCAGTCGAATCGATTCTGTGTCAGTCACAGTCACATTGACATCGTCAG CCGTGCCGCGTTTCCTCTTGTTGTAAGTGACCGAGATTTTGCATTTTGACAAACTGACACACTTA TTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATATTGAAACAATTTCCAGTTCAT CTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACAAATCCAAGCGTCTGCCGTATATTAGTG AACACGAGGGTGACCGTTGCGATGCTCCAGACCTTCATTAATCTCAATCCAACTTCCTCATCATT TTCCATTTCGAATATCTCTTTTTCTTGCACAGAAGCCTTTTTTCG Right flanking sequence: Indices 10532533 -- 10533032 TTAGATAATGCACAGATGCCTCATTGCTCAAATAAATTTATTTTAATTGTCGATTTTTTTTGCAA ATTTTTTTGTCGACGAATTCGGAAAAAAATTGCCGGTTTGCCGATTTGCCGGAAGTTTTCAATTC CAGCAATTTTCCGGTTTGTCGTTTTGCCAGAAAATTTCAATTCCGGCAATTTGCCGGTTTGCCAG AAAGTTTCAATTCCAGCAATTTGACGGTTTTCCGGAAATTTTCAATTCCAGCAATTTGCCGGTTT GTCGATTTGCCAGATATTTTCAATTCCGGCAATTTACCGGTGGTCAAAATCCCAGAAATTTTCAA TTCCGGCAATTTGCCGGAAGATTTAAATTCCAGCAATTTGCTGCTAATAGCCTCACTTTTTGGCC TAGCATCTGGCTAATTTTATTCATTTTTTGAAGATATGTTTAAAGTTGGATAGGTACCCCTAATG TTGCCCTAATGATACTAAATGCTCAGCTTAACTAAATTTACTTAA Found at i:10532677 original size:43 final size:43 Alignment explanation
Indices: 10532627--10532725 Score: 149 Period size: 43 Copynumber: 2.3 Consensus size: 43 10532617 CGGAAAAAAA * ** 10532627 TTGCCGGTTTGCCGATTTGCCGGAAGTTTTCAATTCCAGCAAT 1 TTGCCGGTTTGCCGATTTGCCAGAAAATTTCAATTCCAGCAAT * * * * 10532670 TTTCCGGTTTGTCGTTTTGCCAGAAAATTTCAATTCCGGCAAT 1 TTGCCGGTTTGCCGATTTGCCAGAAAATTTCAATTCCAGCAAT 10532713 TTGCCGGTTTGCC 1 TTGCCGGTTTGCC 10532726 AGAAAGTTTC Statistics Matches: 47, Mismatches: 9, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 43 47 1.00 ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37 Consensus pattern (43 bp): TTGCCGGTTTGCCGATTTGCCAGAAAATTTCAATTCCAGCAAT Left flanking sequence: Indices 10532127 -- 10532626 CCTCGATCATCGCCGTCATCAAGCAGTCGAATCGATTCTGTGTCAGTCACAGTCACATTGACATC GTCAGCCGTGCCGCGTTTCCTCTTGTTGTAAGTGACCGAGATTTTGCATTTTGACAAACTGACAC ACTTATTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATATTGAAACAATTTCCAG TTCATCTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACAAATCCAAGCGTCTGCCGTATAT TAGTGAACACGAGGGTGACCGTTGCGATGCTCCAGACCTTCATTAATCTCAATCCAACTTCCTCA TCATTTTCCATTTCGAATATCTCTTTTTCTTGCACAGAAGCCTTTTTTCGTTTTTTTTTATTGAT TTATTTTTACGGATTTTTAGATAATGCACAGATGCCTCATTGCTCAAATAAATTTATTTTAATTG TCGATTTTTTTTGCAAATTTTTTTGTCGACGAATTCGGAAAAAAA Right flanking sequence: Indices 10532726 -- 10533225 AGAAAGTTTCAATTCCAGCAATTTGACGGTTTTCCGGAAATTTTCAATTCCAGCAATTTGCCGGT TTGTCGATTTGCCAGATATTTTCAATTCCGGCAATTTACCGGTGGTCAAAATCCCAGAAATTTTC AATTCCGGCAATTTGCCGGAAGATTTAAATTCCAGCAATTTGCTGCTAATAGCCTCACTTTTTGG CCTAGCATCTGGCTAATTTTATTCATTTTTTGAAGATATGTTTAAAGTTGGATAGGTACCCCTAA TGTTGCCCTAATGATACTAAATGCTCAGCTTAACTAAATTTACTTAAACTCTGATGAGGCGTCAT AGACTACCCAATGCAGATCAATCGTTTCAGAAATAGCACCATGGATTGTTAGTATTGCAAAACTC ATTCACACTGATTTCTAAACCATAAAGCTATTACCCCCCTCTGCAACCTGTACTACGTGCAGACT TCCACCCACATAACTGACGCCTATTTTCAATTCAACACCGTCATT Found at i:10532725 original size:35 final size:35 Alignment explanation
Indices: 10532677--10532793 Score: 178 Period size: 35 Copynumber: 3.3 Consensus size: 35 10532667 AATTTTCCGG * * * 10532677 TTTGTCGTTTTGCCAGAAAATTTCAATTCCGGCAA 1 TTTGCCGGTTTGCCAGAAAATTTCAATTCCAGCAA * 10532712 TTTGCCGGTTTGCCAGAAAGTTTCAATTCCAGCAA 1 TTTGCCGGTTTGCCAGAAAATTTCAATTCCAGCAA * * * * 10532747 TTTGACGGTTTTCCGGAAATTTTCAATTCCAGCAA 1 TTTGCCGGTTTGCCAGAAAATTTCAATTCCAGCAA 10532782 TTTGCCGGTTTG 1 TTTGCCGGTTTG 10532794 TCGATTTGCC Statistics Matches: 72, Mismatches: 10, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 35 72 1.00 ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37 Consensus pattern (35 bp): TTTGCCGGTTTGCCAGAAAATTTCAATTCCAGCAA Left flanking sequence: Indices 10532177 -- 10532676 AGTCACATTGACATCGTCAGCCGTGCCGCGTTTCCTCTTGTTGTAAGTGACCGAGATTTTGCATT TTGACAAACTGACACACTTATTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATAT TGAAACAATTTCCAGTTCATCTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACAAATCCAA GCGTCTGCCGTATATTAGTGAACACGAGGGTGACCGTTGCGATGCTCCAGACCTTCATTAATCTC AATCCAACTTCCTCATCATTTTCCATTTCGAATATCTCTTTTTCTTGCACAGAAGCCTTTTTTCG TTTTTTTTTATTGATTTATTTTTACGGATTTTTAGATAATGCACAGATGCCTCATTGCTCAAATA AATTTATTTTAATTGTCGATTTTTTTTGCAAATTTTTTTGTCGACGAATTCGGAAAAAAATTGCC GGTTTGCCGATTTGCCGGAAGTTTTCAATTCCAGCAATTTTCCGG Right flanking sequence: Indices 10532794 -- 10533293 TCGATTTGCCAGATATTTTCAATTCCGGCAATTTACCGGTGGTCAAAATCCCAGAAATTTTCAAT TCCGGCAATTTGCCGGAAGATTTAAATTCCAGCAATTTGCTGCTAATAGCCTCACTTTTTGGCCT AGCATCTGGCTAATTTTATTCATTTTTTGAAGATATGTTTAAAGTTGGATAGGTACCCCTAATGT TGCCCTAATGATACTAAATGCTCAGCTTAACTAAATTTACTTAAACTCTGATGAGGCGTCATAGA CTACCCAATGCAGATCAATCGTTTCAGAAATAGCACCATGGATTGTTAGTATTGCAAAACTCATT CACACTGATTTCTAAACCATAAAGCTATTACCCCCCTCTGCAACCTGTACTACGTGCAGACTTCC ACCCACATAACTGACGCCTATTTTCAATTCAACACCGTCATTCTGATGATCGGCTTCCTTGAACA ACCTCGTTTTCTTTCTTTTTTTATTCGCCCTCTCTCTTGCAATGC Found at i:10532813 original size:43 final size:43 Alignment explanation
Indices: 10532747--10532874 Score: 165 Period size: 43 Copynumber: 3.0 Consensus size: 43 10532737 ATTCCAGCAA * * * * * 10532747 TTTGACGGTTTTCCGGAAATTTTCAATTCCAGCAATTTGCCGG 1 TTTGTCGATTTCCCAGAAATTTTCAATTCCGGCAATTTGCCGG * * * 10532790 TTTGTCGATTTGCCAGATATTTTCAATTCCGGCAATTTACCGG 1 TTTGTCGATTTCCCAGAAATTTTCAATTCCGGCAATTTGCCGG * * ** 10532833 -TGGTCAAAATCCCAGAAATTTTCAATTCCGGCAATTTGCCGG 1 TTTGTCGATTTCCCAGAAATTTTCAATTCCGGCAATTTGCCGG 10532875 AAGATTTAAA Statistics Matches: 71, Mismatches: 14, Indels: 1 0.83 0.16 0.01 Matches are distributed among these distances: 42 35 0.49 43 36 0.51 ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35 Consensus pattern (43 bp): TTTGTCGATTTCCCAGAAATTTTCAATTCCGGCAATTTGCCGG Left flanking sequence: Indices 10532247 -- 10532746 AAACTGACACACTTATTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATATTGAAA CAATTTCCAGTTCATCTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACAAATCCAAGCGTC TGCCGTATATTAGTGAACACGAGGGTGACCGTTGCGATGCTCCAGACCTTCATTAATCTCAATCC AACTTCCTCATCATTTTCCATTTCGAATATCTCTTTTTCTTGCACAGAAGCCTTTTTTCGTTTTT TTTTATTGATTTATTTTTACGGATTTTTAGATAATGCACAGATGCCTCATTGCTCAAATAAATTT ATTTTAATTGTCGATTTTTTTTGCAAATTTTTTTGTCGACGAATTCGGAAAAAAATTGCCGGTTT GCCGATTTGCCGGAAGTTTTCAATTCCAGCAATTTTCCGGTTTGTCGTTTTGCCAGAAAATTTCA ATTCCGGCAATTTGCCGGTTTGCCAGAAAGTTTCAATTCCAGCAA Right flanking sequence: Indices 10532875 -- 10533374 AAGATTTAAATTCCAGCAATTTGCTGCTAATAGCCTCACTTTTTGGCCTAGCATCTGGCTAATTT TATTCATTTTTTGAAGATATGTTTAAAGTTGGATAGGTACCCCTAATGTTGCCCTAATGATACTA AATGCTCAGCTTAACTAAATTTACTTAAACTCTGATGAGGCGTCATAGACTACCCAATGCAGATC AATCGTTTCAGAAATAGCACCATGGATTGTTAGTATTGCAAAACTCATTCACACTGATTTCTAAA CCATAAAGCTATTACCCCCCTCTGCAACCTGTACTACGTGCAGACTTCCACCCACATAACTGACG CCTATTTTCAATTCAACACCGTCATTCTGATGATCGGCTTCCTTGAACAACCTCGTTTTCTTTCT TTTTTTATTCGCCCTCTCTCTTGCAATGCAAACAATCTCTTATCACCATATCAATGTCTGTGATT GCCTGAATCTCTAAAGTATTTCGTCGCTTCCTTTCCCGATATAGT Found at i:10532861 original size:42 final size:43 Alignment explanation
Indices: 10532762--10532874 Score: 163 Period size: 42 Copynumber: 2.7 Consensus size: 43 10532752 CGGTTTTCCG * * * ** * 10532762 GAAATTTTCAATTCCAGCAATTTGCCGGTTTGTCGATTTGCCA 1 GAAATTTTCAATTCCGGCAATTTGCCGGTTGGTCAAAATCCCA * * 10532805 GATATTTTCAATTCCGGCAATTTACCGG-TGGTCAAAATCCCA 1 GAAATTTTCAATTCCGGCAATTTGCCGGTTGGTCAAAATCCCA 10532847 GAAATTTTCAATTCCGGCAATTTGCCGG 1 GAAATTTTCAATTCCGGCAATTTGCCGG 10532875 AAGATTTAAA Statistics Matches: 60, Mismatches: 10, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 42 35 0.58 43 25 0.42 ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34 Consensus pattern (43 bp): GAAATTTTCAATTCCGGCAATTTGCCGGTTGGTCAAAATCCCA Left flanking sequence: Indices 10532262 -- 10532761 TTTTTTTCTAAAACTACATTATTTCCTTTGGAGTTTTATAAATATTGAAACAATTTCCAGTTCAT CTTGTTCAACACTCTCTTCTGGCTGATTCTACTGTACAAATCCAAGCGTCTGCCGTATATTAGTG AACACGAGGGTGACCGTTGCGATGCTCCAGACCTTCATTAATCTCAATCCAACTTCCTCATCATT TTCCATTTCGAATATCTCTTTTTCTTGCACAGAAGCCTTTTTTCGTTTTTTTTTATTGATTTATT TTTACGGATTTTTAGATAATGCACAGATGCCTCATTGCTCAAATAAATTTATTTTAATTGTCGAT TTTTTTTGCAAATTTTTTTGTCGACGAATTCGGAAAAAAATTGCCGGTTTGCCGATTTGCCGGAA GTTTTCAATTCCAGCAATTTTCCGGTTTGTCGTTTTGCCAGAAAATTTCAATTCCGGCAATTTGC CGGTTTGCCAGAAAGTTTCAATTCCAGCAATTTGACGGTTTTCCG Right flanking sequence: Indices 10532875 -- 10533374 AAGATTTAAATTCCAGCAATTTGCTGCTAATAGCCTCACTTTTTGGCCTAGCATCTGGCTAATTT TATTCATTTTTTGAAGATATGTTTAAAGTTGGATAGGTACCCCTAATGTTGCCCTAATGATACTA AATGCTCAGCTTAACTAAATTTACTTAAACTCTGATGAGGCGTCATAGACTACCCAATGCAGATC AATCGTTTCAGAAATAGCACCATGGATTGTTAGTATTGCAAAACTCATTCACACTGATTTCTAAA CCATAAAGCTATTACCCCCCTCTGCAACCTGTACTACGTGCAGACTTCCACCCACATAACTGACG CCTATTTTCAATTCAACACCGTCATTCTGATGATCGGCTTCCTTGAACAACCTCGTTTTCTTTCT TTTTTTATTCGCCCTCTCTCTTGCAATGCAAACAATCTCTTATCACCATATCAATGTCTGTGATT GCCTGAATCTCTAAAGTATTTCGTCGCTTCCTTTCCCGATATAGT Found at i:10533798 original size:37 final size:35 Alignment explanation
Indices: 10533740--10533837 Score: 113 Period size: 37 Copynumber: 2.7 Consensus size: 35 10533730 AAAAATCGGG * * 10533740 TGTTTTTTTCAGAAAATTTGAATTTCCCACTAAAAA 1 TGTTTTTATCAG-AAATTTGAATTTCCCACCAAAAA * * * * * 10533776 TTGTCTTTCTCACAAAGTTTGAATTTTCCGCCAAAAA 1 -TGTTTTTATCAGAAA-TTTGAATTTCCCACCAAAAA * 10533813 TATTTTTATCAGAAATTTGAATTTC 1 TGTTTTTATCAGAAATTTGAATTTC 10533838 GTGCCAAATT Statistics Matches: 49, Mismatches: 11, Indels: 4 0.77 0.17 0.06 Matches are distributed among these distances: 35 9 0.18 36 14 0.29 37 26 0.53 ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43 Consensus pattern (35 bp): TGTTTTTATCAGAAATTTGAATTTCCCACCAAAAA Left flanking sequence: Indices 10533240 -- 10533739 CCTTGAACAACCTCGTTTTCTTTCTTTTTTTATTCGCCCTCTCTCTTGCAATGCAAACAATCTCT TATCACCATATCAATGTCTGTGATTGCCTGAATCTCTAAAGTATTTCGTCGCTTCCTTTCCCGAT ATAGTTACATGTTATGTCAATTAAGTGTATGTGTGTGTAAGATAGGAGACAGAAACAACACCAAA AATGAATTTCAGGTGATGGTTTTCTTTGTCATGCTGACTGAAAACGTGTCAATTGGAAAATGATG GGTCAGGAATCCTGCCTATCTTGATAAACCGGGTGGTGGTGTCATTGATTTATAAGGGTACGCGT GGAAGAACGCGGATAATGATGATGAAATGTAGACAGAGAATGATTCATTATCATATCTCTATTGA TATCATATTAAAATAATGTTGCCACGTGGCACTATACTTACCTTACTTGTTTTTGCTCAAGCTTT ACAAAAGTGAGCCCGGAAACAAAAAAAAGTGAAACAAAAATCGGG Right flanking sequence: Indices 10533838 -- 10534337 GTGCCAAATTTTTACCTCAGAAAATTTAAGTTTTTCTGCCGAAAATTGTTCTCAAAAATTTTTTC CCGCTGAAAATTATTTTTCAAAAAATTTGAATTTCCCGCCAAAAAAATTTCTTTAAAATTTGAAC TTCCCGCAAATTTGAAGAACGTTGAACAGTTAGTCCGTGTGATTTGATCTACTCGATCTCATTGA TAAGATCATATACCAAAATACTATACATCTATATTCCGACTACAAACTCCCATGACACCTCACCA TTCTTCTCACCCCTCCCCTCAAGCATCTTCCGATCTTCAAAGAGTTTCGTCGCCAAATTAGGGTC TCCACAGCAGCAGCATCTTTCAACGAAACGATGCCGACCCACGTGCGTTATCAGTTTCTTTTGAC CACATTGCATCACTATTTGTGGTCTCCTCAATGTCACGTGTCCAACTTCCCCCGCCCCCAGCCCG CCCCTTTCGACGTCGACTCATTTCAGTTTGTCGACGACGACGAAA Found at i:10535385 original size:10 final size:11 Alignment explanation
Indices: 10535363--10535386 Score: 34 Period size: 11 Copynumber: 2.3 Consensus size: 11 10535353 CCCCCCTGGA * 10535363 CTTTTTTCTTC 1 CTTTTTTCATC 10535374 CTTTTTT-ATC 1 CTTTTTTCATC 10535384 CTT 1 CTT 10535387 AAACTCTATA Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 10 5 0.42 11 7 0.58 ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71 Consensus pattern (11 bp): CTTTTTTCATC Left flanking sequence: Indices 10534863 -- 10535362 TTTTATATAGAACATTTGAACAAAAATTGAATTGCCGGAATGGAAATTTTCGGCAAACCGGCAAT TTGACAGAATTTAGAACTTCCGTCAAAACAGCAAATTGCTAATTTGCCGCAAAAATGGTAATTAC GGAATATTTTCGGCAAATTGTGGCTGTGCACATTTTTTTTTTGGAAATTTTAGATTATCAATTTT ATCATTTTTAAATCGGCAAAGATTATCAATTTAATTCTGCATAATTGTACGTATCCTATGAATGC TCCTACATCTATTTTAAAAAGCAAAAAATTTCCATGAAAAGATTTCGAAAAAACGGGCAAAAAAT TTCCAAAAAGGCTTAGTTTCCGTCTTATAAAACATCCCTTTAAAAACTTCAGGCAAATTGTTATT CGGCAATTTGTCAAAAATCAAAGTTTCCGGCAAGTCCACAAACCGACAATTTGCCGAATTTTTTC GAAAAAAAAATTTGCCGAACTGCAATTGCTGCCCACCCCCCTGGA Right flanking sequence: Indices 10535387 -- 10535886 AAACTCTATAAATTCCAGAAAACTCAAAACTTCAATCAAAATGACTACATTCGACAAAGGAGCAA AACCAGATATCGGCACTTTTGTTGCATTCGACCATGTTAGATTTGTAGTCGGAAATGCTAAACAA GCTGCCTACTGGTATTGTGCAAACTTTGGCTTTGAGCCATTTGCCTATAAGGGGCTCGAGACAGG ATCTAGAATTACTGCTCAACACGCTATTCGACAAGACAAAATCGTGTTCATTTTCGAGTCAGCAT TGTTGCCTGATAATTCAGAACTCGGAAATCACCTTGTTCAACATGGAGATGGAGTTAAGGATGTG TGCTTTGAGGTTGAGGATCTTGATTCGATTATTGCACACGCAAAAGCTGCAGGAGCAACTATTGT GCATGATATTACTGAAGAGTCAGATGCTGATGGATCCATTCGATATGCTACGCTTAGAACGGTAA GAGACTTAAAAATAAAAATATCTTCAAAAATTCCGAAGTTGTTAA Found at i:10538035 original size:12 final size:12 Alignment explanation
Indices: 10538015--10538038 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 10538005 AAAAGGGGGT 10538015 TCTGAGGAATGG 1 TCTGAGGAATGG * 10538027 TCTGGGGAATGG 1 TCTGAGGAATGG 10538039 GAAAGGGCAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.21, C:0.08, G:0.46, T:0.25 Consensus pattern (12 bp): TCTGAGGAATGG Left flanking sequence: Indices 10537515 -- 10538014 TGATTCTTGTTGCATTTATATTGAGAGAATAAAGATTTTATGAAAGAATTGTTGAGTCTTAATAT CAAAACAAATGTGGAACCCGTGGGTCGTCGGCCGCTGCTTTTTAACACATGCGGCGAGGTGACGC CATGAGGCAGGCGCAGGCACCGTTACGGCGACCTCATGAGAGCCCTAAATTTTGCATATAAATGG TCGGCTTTAGTCAATCTCAATTTGTGCACTAAAACTTATGACTGAAAATCCACTTTTTCTGCTTG AACTTAGCGGATATGAAACTTTTTTTATTTGGTTTTTTTTACATTCTGAATGAACACAAAATTTG CAACAGAATGGCTACGGGGATGTTTGAAAAAGTTAGTTTGAAGCCAGATATTAATTTTTAAAAAT TGGAAACGTCTTTCCTGATAATTCAAAATACTCATCGAACCATTTAACAATCTCAAACTCTGCCA CGTGTTTATTGTTCTCGACAAAGAAATGGAAGGGGAAAAGGGGGT Right flanking sequence: Indices 10538039 -- 10538538 GAAAGGGCAAATAATATAGAGAAAAAAAACGGAAAGTGTCGTACCCAAATATGTGCACAAAAAAA TTAAGGTTTCCTTTTGAAATTGTTGTTGTGTTTTTCAGAGTATTTCAACTGTTGATGGATTTCAG TTCGACCAAAAAATTGATGATGATGCTCTCTGTAGATGTTCTACCACGTGTAAATTAGTCGGTTT GGGCCATATCTGCGAAAAAAATATTTTTTTAAATGAAAGAAGTAAGCCGACCATTCAGATAATTT TGAAAGCACGCAGGCAGAAAGCTCGGCCACAGACTTGTTTTTCGCGGCCGTGTGGAGCTCCGTGA GTTGACACGTGGCCTAGGTTCACAAAAATTTTCACGGCCAACACTTTCTCTTTTTTACGAAGACC ACGTGTCTTCAGTACAAATTTGTGGCCGAACGTTCTCTTTGTCGGCTTGCAATCAGCAAAATACT GCAAGCCTAAGTGTAGGCAGAGACGCTTGCCTATTAGAAGCGATT Found at i:10539710 original size:30 final size:30 Alignment explanation
Indices: 10539647--10539767 Score: 80 Period size: 30 Copynumber: 4.0 Consensus size: 30 10539637 TGTCAACAAA * * * 10539647 TAAGGTTTAGCCTAGGTCTAAATCAAGGCC 1 TAAGGCTTAACCTAGGTCTAAACCAAGGCC 10539677 TAAGGCTTAACCTCAGGT-TAAACCCAAGG-C 1 TAAGGCTTAACCT-AGGTCTAAA-CCAAGGCC *** * * * * 10539707 TAA-GCTTAAGCCTAATCCTAATCCTAAGTC 1 TAAGGCTTAA-CCTAGGTCTAAACCAAGGCC ** * * * 10539737 TAAGGCCCAAGCCTAAGCCTAAACCAATGCC 1 TAAGGCTTAA-CCTAGGTCTAAACCAAGGCC 10539768 AAAAATTTTC Statistics Matches: 69, Mismatches: 16, Indels: 11 0.72 0.17 0.11 Matches are distributed among these distances: 29 11 0.16 30 29 0.42 31 29 0.42 ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22 Consensus pattern (30 bp): TAAGGCTTAACCTAGGTCTAAACCAAGGCC Left flanking sequence: Indices 10539147 -- 10539646 TAACTGGGTTTTAACATGGTTCAATGAACTCAATATAAACATGTATAAAAAATATAAATAAGATA CAAACTAGCAAGGTGGTAAGTGCAAAATTAGTTAAAATGAACCGAAAAATTCTATAAAACTATGA CTTGCATTATTCTTTATTGTGAAAAAACTATTTAAATTACATTTTTTACTGTATTGTAGTAAAAA GAGTTCGATATTTTGAAATTCAAAAAAGTTATCAAGTTTTGAAAAAAAAAGAACTATCATAAATA TGTTCAGTTGTGAATTTTTGGTAAAATACAAAAAAAATCAGTTCCAGTTACAAAATAATTGAGAT GGTAAAATAAATTAAAAGATTTTTCTGACATGGCACGTGATTTCTCAGAAGATTCTCAAAAATTT AAGTGTTGTAAAATGAATTAATGATTTATTGGGTTTAATTGAAAAAGGGGGAAATGGATCAGGAA AAGAATTTGGGACATAATGGGCTTCGGTCAGAATATGTCAACAAA Right flanking sequence: Indices 10539768 -- 10540267 AAAAATTTTCCAAAAACAAGTATGATTAAGCGATTAAAATGACGAGAACTTTGTAAATGCCGGAA ATGGGAGAAAGTAGGTCAAATGTCAGAGTAATCGGATCCACCAACAAAAAGAGCCCGTTGCCCGT CTGATGCTCAAACACTCACATCAACCCCACCACCACCCACCCCCCTTGAACCAGCTGTCGGAGTT GTTGGTGCAAAAATCGAGTGCATTACGAAATTCGAGACGTTGCTGTTGCTCTTCAGAGGCTCCCC CAGGCTCCACCCATTTTCTTAAGGGCGCTAACTAACATATTTTTTTTGGGTAAAACCTGCACGCC AAACCACAAGTGGCCTATTTGCAACTGGCGGTGATTTTCAAGTTTAATGTGGGAAAATGACGAGC TGGGAAAAGAACACCCATTTTGAAAAGAAACTTGAAGATACGAGGTTTTCGCGAATTTTAAATTT TTTAGAAATTTGAAAAATATTTGATCGAATTCATTAGTTTTCAAA Found at i:10540034 original size:10 final size:11 Alignment explanation
Indices: 10540019--10540040 Score: 37 Period size: 10 Copynumber: 2.1 Consensus size: 11 10540009 TGCTCTTCAG 10540019 AGGCTCC-CCC 1 AGGCTCCACCC 10540029 AGGCTCCACCC 1 AGGCTCCACCC 10540040 A 1 A 10540041 TTTTCTTAAG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 7 0.64 11 4 0.36 ACGTcount: A:0.18, C:0.55, G:0.18, T:0.09 Consensus pattern (11 bp): AGGCTCCACCC Left flanking sequence: Indices 10539519 -- 10540018 GAAGATTCTCAAAAATTTAAGTGTTGTAAAATGAATTAATGATTTATTGGGTTTAATTGAAAAAG GGGGAAATGGATCAGGAAAAGAATTTGGGACATAATGGGCTTCGGTCAGAATATGTCAACAAATA AGGTTTAGCCTAGGTCTAAATCAAGGCCTAAGGCTTAACCTCAGGTTAAACCCAAGGCTAAGCTT AAGCCTAATCCTAATCCTAAGTCTAAGGCCCAAGCCTAAGCCTAAACCAATGCCAAAAATTTTCC AAAAACAAGTATGATTAAGCGATTAAAATGACGAGAACTTTGTAAATGCCGGAAATGGGAGAAAG TAGGTCAAATGTCAGAGTAATCGGATCCACCAACAAAAAGAGCCCGTTGCCCGTCTGATGCTCAA ACACTCACATCAACCCCACCACCACCCACCCCCCTTGAACCAGCTGTCGGAGTTGTTGGTGCAAA AATCGAGTGCATTACGAAATTCGAGACGTTGCTGTTGCTCTTCAG Right flanking sequence: Indices 10540041 -- 10540540 TTTTCTTAAGGGCGCTAACTAACATATTTTTTTTGGGTAAAACCTGCACGCCAAACCACAAGTGG CCTATTTGCAACTGGCGGTGATTTTCAAGTTTAATGTGGGAAAATGACGAGCTGGGAAAAGAACA CCCATTTTGAAAAGAAACTTGAAGATACGAGGTTTTCGCGAATTTTAAATTTTTTAGAAATTTGA AAAATATTTGATCGAATTCATTAGTTTTCAAAACAAAATTAAATTTTTTTTCAGAAAATCCTAAA GTTCGAGAAACTTCTAGGAATGAGGGAGATTTTGGAACTTTCTGGAAAATTTTAGATTTTGTTAA TACTAGATTAAAAAAATTTCTACAGCCCTTCAAAGTAACCTTTCTCAAACAAATTTTACATGGTT TGAGTTTAAATTTAAATAATAACAGCAAAAAGTAACTTTTTGAAAAAGCGGACAAAAATGTTAAT GAGCCATTTTTTTGCTCTCTTTTAAGTAGACTTTTCCATCATGAT Found at i:10542487 original size:24 final size:25 Alignment explanation
Indices: 10542437--10542487 Score: 67 Period size: 24 Copynumber: 2.1 Consensus size: 25 10542427 GCCAATCGGC ** * * 10542437 AATTTGCCGAAAATCAAATTTGTCA 1 AATTTGCCGAAAAAAAAAGTTGCCA 10542462 AATTTGCC-AAAAAAAAAGTTGCCA 1 AATTTGCCGAAAAAAAAAGTTGCCA 10542486 AA 1 AA 10542488 CGGCAATTGC Statistics Matches: 22, Mismatches: 4, Indels: 1 0.81 0.15 0.04 Matches are distributed among these distances: 24 14 0.64 25 8 0.36 ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25 Consensus pattern (25 bp): AATTTGCCGAAAAAAAAAGTTGCCA Left flanking sequence: Indices 10541937 -- 10542436 TGGAGAATTGCCGATTTGGCGGTTAAACGGCAATTGGCGAAAATTTTCGGCAAACTGTGGTTTTG CACATTTTTTTGGAAATTCCAGAATTTCAATGTTTAAAGGATTAAAGGACGATCCGTTCTTTAAG TGCTATGCACTGCGGATCTGGGATTCAGGTACACTGCCTGGTGGTGATCCCTCTGGGCTGTAATT TAAGCCACGTCCTAGCCGGGGACTGTGGCCGATAATCCAGTCGTGGATTGCTCCACTTCCCAATA GAGGCTGGGTGAACCTAGGGGGTGAGGGCGGACTTGAACTCGTGACCTCCAGACTGCTAGCGGCC ACCACTACCGACTGAGCTATCTGCCCCCCCCCCCCCCCCAAAATTGGCAAAAATGCATGCATCCT ATGAATGTTCCCACATATATTTTGAAAAGTGAGGAAATATTATGAATCCATCTAGAAAAACAGGG GCAATTTGTTGAAAATCAAAATTTCCGGCGAATCGGCCAATCGGC Right flanking sequence: Indices 10542488 -- 10542987 CGGCAATTGCCGCCCACCCATGTGCCTACCTAAATATCTACGGGCTCCGACGAGGCGGCGAGGGC TCTTTTTGTCCTTCATACTTACTACTTACTACCTGACCCTAAATACAGTAGTGCGTATTTCCGCG GAAGGAAAAACTCGGCCACACAGGAAAATTCACACTGTGATGCTGAATTGCCGGTACCGTTGCGT GAGACACTTTTCAATGAGTGACCTTGAAAAAGTATTAGAAACCTCGGCCACGTCGGAAAGAATTT CAATGTTTCATGGCCGAGCAGCTAAAAAACTCGGTCACCAACTTACAGTATCTAAATTTGCAAAA ACTGAGCTGCAAGTCTAGAATATTAAGATCCAGAAAATTTTCTGGGCTTCCTCGAATGTCTGCCT GTAACCTGGACACTTTTTATATGCAAATTTTTGAACAGATATTTCCGAATTTTCAGCATATTTAA ATGATCAGAGTCACAAAACCAGGTGGAACAGAAGGTTGTTACGTA Found at i:10547248 original size:34 final size:33 Alignment explanation
Indices: 10547178--10547304 Score: 107 Period size: 31 Copynumber: 3.7 Consensus size: 33 10547168 TAGAACAAAT * 10547178 TTCAAACTTTCTCAAAAAAACATTTTTTTGGTGGGAAA 1 TTCAAACTTTCTCAAAAAAAC-----TTTGGCGGGAAA ** * 10547216 TT-AATTTTTTTCAGAAAACAACTTTGGCGGGAAA 1 TTCAAACTTTCTCA-AAAA-AACTTTGGCGGGAAA 10547250 TTCAAACTTTCTCAAAAAAAC--TGGCGGGAAA 1 TTCAAACTTTCTCAAAAAAACTTTGGCGGGAAA * * * * * 10547281 TTCAAATTCTGTCATAAAAATTTT 1 TTCAAACTTTCTCAAAAAAACTTT 10547305 TTGGACGAAC Statistics Matches: 72, Mismatches: 12, Indels: 15 0.73 0.12 0.15 Matches are distributed among these distances: 31 26 0.36 33 4 0.06 34 17 0.24 35 8 0.11 37 8 0.11 38 6 0.08 39 3 0.04 ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35 Consensus pattern (33 bp): TTCAAACTTTCTCAAAAAAACTTTGGCGGGAAA Left flanking sequence: Indices 10546678 -- 10547177 TCGCTTTATTCTGATCTCTTTGCTCCAAAAGAAAAAATGAGCGAAAAAGCGGAAAAGGTCCAAAA AATAAGGTTCAAAATAAAAAAAGAGCGAAATAATAAAAACTACTAAATAATTGAGGAATGTAAAA TTCTGCGAATAACAATAAACAAATCGAAGTGAAATTTGTGTGATGAATTTCAGAAAAATTATAGC CATGGTGGATACGAATTTTTGTACTGGAACGTGCCCCCCTGGTGTTGGAGTCTCAAAGTTCTACA GTTGTCTCCGTGGAGTACACGGAACTGCCCGGGTATTAATGGAAGAGGAATGACGTCACATTTGG CCTGGAAATATATTGCCGGCTGAAAAATGAAAAAGGAGCGATGCTATTGATGACCTAGACACCCC AACCGCTGCCAAAATGTTTGTACATCGCGGCCTTATGATTGAGAAAATACGGTGATGTCACACGT GGCCTAGAAAACTCCGAGGTGACCTAGAAACCTAATAGAACAAAT Right flanking sequence: Indices 10547305 -- 10547804 TTGGACGAACTGCTGGTGAAAAATAATTGGTCCCATAAGTGTGAAGAAAACTTAATTTCCATTCA AAATATTTTTCGGAAGAAAATTTGTTATTTTCTGTGAAAAGAGATGTTCCAAAAAAGAAAAACTT CCTTCTACTAAAAATAAACAAATGCCGCAAACTAGATAGCAAGAGCAGAGTATATTTTCAAATTT AAATAATTTGCTAGCGGGGGTCACTCCGCCCCTCTTTCTCTTTTATGGGACCTCGTGGGGGTGCC CACTGGTGACGTAGAATTACATTTCGACTACTGACGTGGATATTTTTTTTTTTGGTAAATTTATG GAGATGCAAAATGGGACACATATTTTGAAACACGAAAAAAAACAGATGAAAAGGTAATCAAGAAA CAAAAATAACTAGGGTTTCTATTTTTGAAAAAAAAAAATTTTGTTTTTGTGGGTGTGATGGTTGT GGGTCAAATCTAAGATTATTGGGATTAAAATTTAGGCTATGGAAA Found at i:10549321 original size:13 final size:14 Alignment explanation
Indices: 10549297--10549332 Score: 49 Period size: 12 Copynumber: 2.6 Consensus size: 14 10549287 GTCCCAAGAA 10549297 AAAACACA-AAAT- 1 AAAACACATAAATC 10549309 AAAACACATAAATC 1 AAAACACATAAATC 10549323 AAATACACAT 1 AAA-ACACAT 10549333 TATATTATAT Statistics Matches: 21, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 12 8 0.38 13 4 0.19 14 3 0.14 15 6 0.29 ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14 Consensus pattern (14 bp): AAAACACATAAATC Left flanking sequence: Indices 10548797 -- 10549296 TTTGTTTTTGAATTTTCATGTTTTTTGTTTTTAGTAATGACATATTTGAATATATGTATATAAAG CCTACTTTTTATTTTGTTTTTCCTCTCCTCATGTTCAGTTGAATTTTTAATTTCTTTGCTCATTT TAAGAAGCCCCAGGGTAAGGTAAAAACTGAATTTATCTAACCAAACGTCAAAATATTGCTTGATG GAGTTTGATCCTGTGACGTTTTTCTCCTGAATCAAATTTCTGAACAACTAAACAAAAAAAGGGTT ACTTATTGGTAACAAAAACATATGCGAACACACCAAAAACTGGATTTTTTTTAATGGATTTAGTA GGGAATGGAACAATTTTTAGACATGGTGCATCGACCGAGAATACCCCAACCTAACTGTTGCGTCA TATTTCGACGTATGTCAAATATATATATATATATATATATTTATTTATTTATTTATTTATTTATT TATTTATTTTAATACGATTCCACACGAAAAAATGTGTCCCAAGAA Right flanking sequence: Indices 10549333 -- 10549832 TATATTATATATTATAAGTAGATATATTATAAGTAGTAATATACTTATAAGTAGATAATTATTAC AAATCTATACACAAATTTATGATAAAAACTTTATCGGTTGGCTACTTTTTGACAACGTTAAAGGC AGCCCAAATAAAAACAATTTCTAGGCATGGTGCATCGACTATACGTACTCTTGAGTACAAAACTA CCGAGAAATTTATGATAATCAATTTATCAGTTGACAATTTTTCGATAAACCTCTAGACCAGATAT GAGCTTCCAAAGTTGAGTTATGTGGTGTAACACAATTTCTAGGCATGGATAGGAAGGCATGGTGC ATCGAATGCACGCACTCAATGTTTAATTTTAGAGCTTGGTCAAAACTATATAAAAATTACAAATT TCCGATAAACATTTTCCCAGTTGGCAATTTTTTGATAAAACTTACAACAACCAATACATAACCTT CCAAAGTTAGTTACTACATAATTCAAAAAAGTTGACCTAGACACT Found at i:10549359 original size:15 final size:15 Alignment explanation
Indices: 10549339--10549394 Score: 78 Period size: 15 Copynumber: 3.6 Consensus size: 15 10549329 ACATTATATT 10549339 ATATATTATAAGTAG 1 ATATATTATAAGTAG 10549354 ATATATTATAAGTAG 1 ATATATTATAAGTAG 10549369 TAATATACTTATAAGTAG 1 --ATATA-TTATAAGTAG 10549387 ATA-ATTAT 1 ATATATTAT 10549395 TACAAATCTA Statistics Matches: 38, Mismatches: 0, Indels: 7 0.84 0.00 0.16 Matches are distributed among these distances: 14 4 0.11 15 16 0.42 16 3 0.08 17 5 0.13 18 10 0.26 ACGTcount: A:0.46, C:0.02, G:0.11, T:0.41 Consensus pattern (15 bp): ATATATTATAAGTAG Left flanking sequence: Indices 10548839 -- 10549338 TATTTGAATATATGTATATAAAGCCTACTTTTTATTTTGTTTTTCCTCTCCTCATGTTCAGTTGA ATTTTTAATTTCTTTGCTCATTTTAAGAAGCCCCAGGGTAAGGTAAAAACTGAATTTATCTAACC AAACGTCAAAATATTGCTTGATGGAGTTTGATCCTGTGACGTTTTTCTCCTGAATCAAATTTCTG AACAACTAAACAAAAAAAGGGTTACTTATTGGTAACAAAAACATATGCGAACACACCAAAAACTG GATTTTTTTTAATGGATTTAGTAGGGAATGGAACAATTTTTAGACATGGTGCATCGACCGAGAAT ACCCCAACCTAACTGTTGCGTCATATTTCGACGTATGTCAAATATATATATATATATATATATTT ATTTATTTATTTATTTATTTATTTATTTATTTTAATACGATTCCACACGAAAAAATGTGTCCCAA GAAAAAACACAAAATAAAACACATAAATCAAATACACATTATATT Right flanking sequence: Indices 10549395 -- 10549894 TACAAATCTATACACAAATTTATGATAAAAACTTTATCGGTTGGCTACTTTTTGACAACGTTAAA GGCAGCCCAAATAAAAACAATTTCTAGGCATGGTGCATCGACTATACGTACTCTTGAGTACAAAA CTACCGAGAAATTTATGATAATCAATTTATCAGTTGACAATTTTTCGATAAACCTCTAGACCAGA TATGAGCTTCCAAAGTTGAGTTATGTGGTGTAACACAATTTCTAGGCATGGATAGGAAGGCATGG TGCATCGAATGCACGCACTCAATGTTTAATTTTAGAGCTTGGTCAAAACTATATAAAAATTACAA ATTTCCGATAAACATTTTCCCAGTTGGCAATTTTTTGATAAAACTTACAACAACCAATACATAAC CTTCCAAAGTTAGTTACTACATAATTCAAAAAAGTTGACCTAGACACTATCTAGACTATAGTTGA GCTGTGTGAACTAAGGAAACACAACAACAAAAAAGTGTCCTGCTT Found at i:10550596 original size:11 final size:11 Alignment explanation
Indices: 10550573--10550605 Score: 38 Period size: 11 Copynumber: 3.1 Consensus size: 11 10550563 ACTAACTCAT * * 10550573 TAATCATATAA 1 TAATCACAAAA 10550584 TAATCACAAAA 1 TAATCACAAAA * 10550595 T-ATGACAAAA 1 TAATCACAAAA 10550605 T 1 T 10550606 TTAAGTCAAT Statistics Matches: 19, Mismatches: 3, Indels: 1 0.83 0.13 0.04 Matches are distributed among these distances: 10 9 0.47 11 10 0.53 ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27 Consensus pattern (11 bp): TAATCACAAAA Left flanking sequence: Indices 10550073 -- 10550572 AATTGTTGAGCTGTGAACTTTTGCTGCGGCTGGACAGGGAGACCATCCAGATGGAAATAATTTGA CGGTGGCACCGCGAGCCCTGAACACTCTGACTCATTTTTTGATCACGAGCCAACTACTACTACTA CTATTGCGAACCAAAAATGAATATAAAATTTTTATGACCACCCAGAGTCGACGGGTCTCCAGAAA ACATGACGTCGAAACGGATTTTTTTTGGGTACGAATTTAGAAAGGACAAACAAACATTTTTTGAG TGTTGGGGAACGCCGAGGAACATCTCAAAACTACTTGGCACGTGAAACTCAAGAACGGAGAAGTA TCAATAGTAGGTAGATAATTTTGGACAGCTAAAATCATAAAATTTGAGGCTTAATCACTTTTAGT TCTGCAAAAAACCATTACAACAAATATAAAAACTACTGAAAAATAAAAATCCAAAATTCTTGTAC ATTTCCTCAAAACTGGAAATTTAATCTACGAAAATACTAACTCAT Right flanking sequence: Indices 10550606 -- 10551105 TTAAGTCAATTTTTTAACTTCCACAAATGATCCGATCATCCAGCTTTTGCAGTGCTCAAATATTT TTTCATTTGGACAATATTGTTCAAAGAACCTTGAGCCTCATATTATCGCAAATAACAATTTCCGG GCTAAAAAATGAGCCCAAAAAAATATGGGTTTAGATTCTGATACTTACATTTCAGAGGGAATTTC AGTTTTTATGACGCCCTAAAAAGAAAATTGCTCTAATAGCAGTTTGCAAACTGCAGTGAGAAACT TTACAAAAGTTGTCACTGTACTCATTGCTCCTACCTAAGATGAGCTTTTTCTGGCAGAACAATGG CACGCTTTTCTAAATTTTAATACCGCCAAATAAATTTATTCAAAGAACTAAACTTTCATAATTTA TTATTTAAAAACAAACGAACAAGTAGAAAAAACACAAAAATCGAGTTAATCAATATTATCCTAAT CCCGATGTCTATCCGCATTGTAAACGTATTGTTCGGTAAGCGATG Found at i:10553637 original size:10 final size:11 Alignment explanation
Indices: 10553615--10553639 Score: 36 Period size: 11 Copynumber: 2.4 Consensus size: 11 10553605 CTTTGCGGAA * 10553615 TTTTCATCGAT 1 TTTTCATCAAT 10553626 TTTTCAT-AAT 1 TTTTCATCAAT 10553636 TTTT 1 TTTT 10553640 TTTGGATAAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 10 6 0.46 11 7 0.54 ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64 Consensus pattern (11 bp): TTTTCATCAAT Left flanking sequence: Indices 10553115 -- 10553614 TACTCCTCGTGAACAACAATTCACTCAAAATTTAATGGTGTATTGTCAGTGAACCATGCCTTTCC CAATACACCATATTTTACGCGCAAACTTCAAAAAAAAAAAAAAAACTAACCCGTCCACGTCTTTC CTCTCATAAATCGATGAAGGTTTCTTCTCCAGTTCCTTATCTGTTTTGGGACTTCTTTTGACTTT CGACACCTTCGAGCGATCCGATTTTTTCGATATCGACTTCTTGTTCGACTTTTTCGATGGGCTCG ACAATTTCCGAGATTTTGTCGATTTCCCTTCCGAATTTTCGAGTGGAGCGGCTTCGGATCTTTTC TGCCGAGAACTCTTATTGTGCTCATATTTAGAGTTATCCTCGAGTCCTGAAAATAAACGTTATTG CGAAATTTTGAGTCAAATATACGGTACCGGGTCTCGTCACGACAAATTTTTGTTAATTTTCGAAA AGGTGCGCGCCTTTAAAGCGTACAGTAATTTAAAACTTTGCGGAA Right flanking sequence: Indices 10553640 -- 10554139 TTTGGATAAAAATATTATTAATTTGCGAGAAGAACTTAGAAAAACTCCACAGCTCCAAATTACAG TACTCTTCAACAACAGTTTGTCGTTTCGAGACTCAGTACCATATTTTTGAAGATCATTTTTGGAA ACACGCGCGCCCCCATTACAAAAAGTGAGCGGATCCTTACTTCTGACACTTCCATCCTTATTCAC GTTGAATCCTTTGATGCTGTGGCACTTTCTTGAAGTCTCGGAATCTATTTTCTGAACATCGGGGC CCTCGACCGGCGGAATAAATTCATCCGGATCCAGTGCTCGAGCTCTTCGCCGTTTTTTTGAAAAT GATGGAGACTTTTCGGATTCCGATCGCTTATTGGATGATGATCTGCAATGAAAATTACGCGTGAA ATTTGATGTGTGTGACATTTTTTAAAACCAAAATAGCGCCTTAAAAAATTCTAACATTATAATTT CACGTGAAAAACGTGAAAGAATAGTAAAAAGTTGTCGATTTTTTC Found at i:10557482 original size:35 final size:35 Alignment explanation
Indices: 10557443--10557527 Score: 128 Period size: 35 Copynumber: 2.4 Consensus size: 35 10557433 TATAAAATGT 10557443 GCCGGTTCGAGTTTTACCGCAAGTAGATTCTTTCC 1 GCCGGTTCGAGTTTTACCGCAAGTAGATTCTTTCC ** * * * * 10557478 GCCGGTTCGAAATTTTCGGCTAGTAGATTTTTTCC 1 GCCGGTTCGAGTTTTACCGCAAGTAGATTCTTTCC 10557513 GCCGGTTCGAGTTTT 1 GCCGGTTCGAGTTTT 10557528 CCGGCGAGAC Statistics Matches: 42, Mismatches: 8, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 35 42 1.00 ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38 Consensus pattern (35 bp): GCCGGTTCGAGTTTTACCGCAAGTAGATTCTTTCC Left flanking sequence: Indices 10556943 -- 10557442 GGGATGCTTGAGAGTCGCAGAAAGTTTGCGGTTCGTTGCTCTTGGATCATCTTCCAGGGCTCTCG AAATATCCTCGTCGATATTCAAACGAGAGCGATCTTATCTTGGTTTATCATCGAGATCGTAGTTC TTTTTCGTGAACTTTTCGAACCAAAACTTCATGGTATTATAGGTGACAGAGTTCTTGCTTAACAC TGCACACATGTTACGACGAGCTTCGTTGCAATTGCAGATTTGGGGGAACTCGTACAGAAAAACCC ATCGGAGGGCGTGACGTTCGGCGAGCAAATTCTCGGTCATTTTGAACAGCACCCAAAAGTTTTTT TTAAATATATTAAACATGCACATTACGTACTATGCAAATAAAAAAACAGAATCAGAAAAAAATGA ATTAACGCTGAGAAATGAAGAAAAGTACAAATTTTGCAAAGACTTTTCGACCAACCTAATACTTT AACCGTCCACTACAGAGGCGTGAGATTCGCAACTATATAAAATGT Right flanking sequence: Indices 10557528 -- 10558027 CCGGCGAGACTTTTCAAAGCAATTTGCGAGTCAAATATACTGCCTATGTCTACGCAATTTTTCTA CGGTATACTCAGTCTTTTTCCTATTACCGGGCGCGGGAAGAGCCGACTTGTGTCGATTTACGGAG TTTTCCTCTTCATTATATTCGTATATCTTCGTATATCTACACAAATCGGACAAATACATACCTTT CTCTCGAATACCCGTTTCCTTCGCGAGCGGTGCAGAAAACAATTAATGTAGCATTGAAGAGTATT AGAAATGTAAATTGAATTACGACTGAAAATTATCGAATTTTTCTGACAAAAAAACGGAAAATTCT TACTCAACATTTGATCCGTAGAAAAATATTATTGAGAAATGAGTAGATTCAGTGATTAGTCAGTT AGCACGTAAAATGTCAAATGCCAAAAAAATGTTTAAACTGAAGAGGGGGAGGAAGGGGTACACGT AAATTTGGAAAGGTTTTTGCATTTCCGGCAATTTGTCGATTAGCC Found at i:10562046 original size:11 final size:11 Alignment explanation
Indices: 10562023--10562046 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 10562013 TTTTAAATTG * 10562023 TTTTATTGATT 1 TTTCATTGATT * 10562034 TTTCATTGGTT 1 TTTCATTGATT 10562045 TT 1 TT 10562047 AAAACGTTTT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.12, C:0.04, G:0.12, T:0.71 Consensus pattern (11 bp): TTTCATTGATT Left flanking sequence: Indices 10561523 -- 10562022 TGGGTTCATTCACTTACCATCCATATTATAATTATTCGCAGCCATCTTGATGAAGTTTTTTTACT TCAAATTCCGAAATAAATTATTCTGAACTTTTACTTTCACTTTCCAAGTTGACGGTCGGTTCACG CGAACCGAACACAGTTTAATTAATTTGTTTTTTTTTTGTTGTGTGTTCTATTTTTAGATTCAAAA ACTTGATGATCTTTGTATTTTCCATTGAATTCAACAGAAATTCTTTGAAAAATGGGGGAAATTGC TGGATTTTGAGTGTAAAACGTTTTAAAACAGCTTCCACAATAAAAATTAATTATTAATACACTTT CCCAGCTTTCCAAACTAAAGTTTCAAATGGAAAATCTCAAAATTTCACTTTAAAACATTTTTCCC GAGAAAAATCAATAAAAATTTGCCAAATTCTTACGGTGTTTTTAAAGGCGCAAGTTGAAAATTTT TGTGTCGTGGTGAGACCCGTGCGCCTTTAAAGAGATTTTAAATTG Right flanking sequence: Indices 10562047 -- 10562546 AAAACGTTTTCTTGTCGATTTTCCATAGTTTTTCTTGTTAAAAAGCGCAAAATATTTTAATTAAT AGAAATTATTCATTATAAATCGTTTATTACTGTAAAAATGTTCAAAAAAACGCGGAAAACCCAAA AAAACCTTGCGAAAAGCGATTTTAATTCAGCTAATTAAAAATATATTTCAAACTTTTCGATTTTC GTTGATTTTTCGTGTTTTTCTAAAAATTGTCTTTTTTGGAAAATTTATTTAAAAAAAAATAACAA AAGAAGTACAGAAAAAATAATTAAAAATATCCCTCTAGGCACTAAAAACTAGGTAAATCAATTAT TAAATCAATTTTTTCTCAAAAAAAAGGCAAAAAAATTAGTTAAACCAATTTTCCATATAATATTT AAATGAACAATTCTCTCAAATTTCAAAACCCAGCAGAGGAAGTAATAATGGGGGATATAACAGGT ATACACACACAAAACCCTACTCAATATCTCTAATCCTCTTCAAAT Found at i:10563887 original size:13 final size:13 Alignment explanation
Indices: 10563869--10563894 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 10563859 ATATTTTTAG 10563869 ATAATTAAATTTT 1 ATAATTAAATTTT 10563882 ATAATTAAATTTT 1 ATAATTAAATTTT 10563895 TAAAAGTTTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (13 bp): ATAATTAAATTTT Left flanking sequence: Indices 10563369 -- 10563868 GAAAAAATTATTTCATTTTCAACCATTCAACAAAAAAAAAGAGAATATTGATTTTTTTTTCGAGA AAACCTTTTTAATATTTAAAAAATTAATAAAACTCACTAGAAAAAAAATCAACGATAATGAAATA TTTGAAAATTTAAAAATATTGCGAAAAATCAATTTTCCATTGGCAAAAGTCGATAATTTCTAAAT TAAACAATTTGATAAATTTCATAGAATTGAATTTTTTCAAAAATTTTAATTTAAAAGAGCTATTT CTTCACCAAAAAAAAAAGAAAAATTAACTTTATTAGGTAGAAATATTTAATTTTTTGTAAAAAAA AACTTATATGGCTACTGTAGTGTCGATTTACGAGCTCAGCGATATTTAATTTTCTTCAGTTAAAG AAAAGATAATTTATCTATTAATAAATGTTATCCGTAAATCGACATCAGCGCTACAGTAGTCATTT AAAGAAAAAAGAATTACTGTAGTTTTCGCTACGAGATATTTTTAG Right flanking sequence: Indices 10563895 -- 10564394 TAAAAGTTTTTCCTAATGAAAAAAATTTTCCAGAAGCGCCCACGCAATAGTTCTAGTGTACGATG TATCGTGTCAACCATCATTTGATTGTCTTCCAGAATGGCTTGGTGAAATCGAAAGTTATGCAAAT CGGCGAGTTTTGAAAATTCTTGTTGGTAAGTTTGGGGGAATTTAGATTTAAAAAATACTAAATAT TTGAAATTTTGCAGGAAACAAAGTCGATAAGGGAGACGAACGGGAAGTTCCCGAACGAATTGGAA GAGATTTTTCTGATGTGAGCATTAAAAAAAATTCTTGGTATTTTTCTAGAAACTGTCAGAATTCC CAAAAAATTATTAATAAAAATAATTTTCTGAATTAATTTGCACAGTTTCTAGTAGAATATCAGAA ATTAGGGAATTTTCGACATTTAAACATCAAATTATTCGAAAGAAAACAGGCATTTTTCGACTTTT TACCTCAAGCTTTCAAAAAAATTTTATTTTTTAATTTTCAGGTCA Found at i:10564563 original size:12 final size:13 Alignment explanation
Indices: 10564536--10564563 Score: 35 Period size: 13 Copynumber: 2.2 Consensus size: 13 10564526 GAAATTTGAG * 10564536 AAAAAATGACAGA 1 AAAAAATGACAAA * * 10564549 AAAAAGTGAAAAA 1 AAAAAATGACAAA 10564562 AA 1 AA 10564564 CGAGTTTTTA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.75, C:0.04, G:0.14, T:0.07 Consensus pattern (13 bp): AAAAAATGACAAA Left flanking sequence: Indices 10564036 -- 10564535 GAAAATTCTTGTTGGTAAGTTTGGGGGAATTTAGATTTAAAAAATACTAAATATTTGAAATTTTG CAGGAAACAAAGTCGATAAGGGAGACGAACGGGAAGTTCCCGAACGAATTGGAAGAGATTTTTCT GATGTGAGCATTAAAAAAAATTCTTGGTATTTTTCTAGAAACTGTCAGAATTCCCAAAAAATTAT TAATAAAAATAATTTTCTGAATTAATTTGCACAGTTTCTAGTAGAATATCAGAAATTAGGGAATT TTCGACATTTAAACATCAAATTATTCGAAAGAAAACAGGCATTTTTCGACTTTTTACCTCAAGCT TTCAAAAAAATTTTATTTTTTAATTTTCAGGTCAACCAATTCGACTATTTTCTTGAAACTTCGGC ACTTGACGCGACAAATGTAGATCAATTGTTCGAACAAGTCGCCACAAGGTTAACAAATGATATGA AACTCACTGATGAACGGTTTGTGGATTTTTTGTAGGAAATTTGAG Right flanking sequence: Indices 10564564 -- 10565063 CGAGTTTTTAGAGAATCTTTCAAAAATAATTTTTAACTAATTTTGGGGGAAATTTAAAAAAATAT TTGAAAAAATACAAAATCAGGATTTTTAATTAAAAAATTATAAAAAAATATTTTTAATAGAAATT AGAAAATTGTAATATTTTTTAATTTAAATCAGAAATTCATAAAAGAAAAAAATAAAATTAGAAAT AACAAATTTATGGACTTTTAAAGAAAAATTTCTTTAAAAAATTTAAAAATTATGAACAAATTTAA ACTAAGAAAAACATGAAAAAATTAAAAATTTTGCGAAATGCAAAATCAGAAAAAAAAAATCGAAA ATTGAAAAAATCGAATTCATGAAGCAATTTAATATAAGAAATCTATGAATAAATATGGATACCAT TAATTTTAAATTTTGAAGTAAATAAAATTAATTTTCATACTGAAAAATCTAAAATTTCTTTTTTT TTGTAAATAAATATATATATTCCAGGGTACACCAATTCCGAGCAG Found at i:10564630 original size:12 final size:12 Alignment explanation
Indices: 10564615--10564639 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 10564605 TTTGGGGGAA 10564615 ATTTAAAAAAAT 1 ATTTAAAAAAAT * 10564627 ATTTGAAAAAAT 1 ATTTAAAAAAAT 10564639 A 1 A 10564640 CAAAATCAGG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32 Consensus pattern (12 bp): ATTTAAAAAAAT Left flanking sequence: Indices 10564115 -- 10564614 GATAAGGGAGACGAACGGGAAGTTCCCGAACGAATTGGAAGAGATTTTTCTGATGTGAGCATTAA AAAAAATTCTTGGTATTTTTCTAGAAACTGTCAGAATTCCCAAAAAATTATTAATAAAAATAATT TTCTGAATTAATTTGCACAGTTTCTAGTAGAATATCAGAAATTAGGGAATTTTCGACATTTAAAC ATCAAATTATTCGAAAGAAAACAGGCATTTTTCGACTTTTTACCTCAAGCTTTCAAAAAAATTTT ATTTTTTAATTTTCAGGTCAACCAATTCGACTATTTTCTTGAAACTTCGGCACTTGACGCGACAA ATGTAGATCAATTGTTCGAACAAGTCGCCACAAGGTTAACAAATGATATGAAACTCACTGATGAA CGGTTTGTGGATTTTTTGTAGGAAATTTGAGAAAAAATGACAGAAAAAAGTGAAAAAAACGAGTT TTTAGAGAATCTTTCAAAAATAATTTTTAACTAATTTTGGGGGAA Right flanking sequence: Indices 10564640 -- 10565139 CAAAATCAGGATTTTTAATTAAAAAATTATAAAAAAATATTTTTAATAGAAATTAGAAAATTGTA ATATTTTTTAATTTAAATCAGAAATTCATAAAAGAAAAAAATAAAATTAGAAATAACAAATTTAT GGACTTTTAAAGAAAAATTTCTTTAAAAAATTTAAAAATTATGAACAAATTTAAACTAAGAAAAA CATGAAAAAATTAAAAATTTTGCGAAATGCAAAATCAGAAAAAAAAAATCGAAAATTGAAAAAAT CGAATTCATGAAGCAATTTAATATAAGAAATCTATGAATAAATATGGATACCATTAATTTTAAAT TTTGAAGTAAATAAAATTAATTTTCATACTGAAAAATCTAAAATTTCTTTTTTTTTGTAAATAAA TATATATATTCCAGGGTACACCAATTCCGAGCAGACGCGACGAACTCCTCTTCCAGCACGGGCGG TCCCATCAAATTAATCGATCGAGCGCAGACACAACTGAATTCCTG Found at i:10566128 original size:11 final size:11 Alignment explanation
Indices: 10566105--10566128 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 10566095 CGTTTTCTGT * 10566105 TTTATTGGTCA 1 TTTATTGGCCA * 10566116 TTTATTTGCCA 1 TTTATTGGCCA 10566127 TT 1 TT 10566129 ATACAGATTA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.17, C:0.12, G:0.12, T:0.58 Consensus pattern (11 bp): TTTATTGGCCA Left flanking sequence: Indices 10565605 -- 10566104 TAGTGATTTTTGCGCCAAAAATACGGTATCTGGTCTCAACACGACAAATTTTTCGTGATTTGCGA ATACTTAGGTATGCGCCTTTAAAGAGTACAGTAATTATCATATTTTTCTGCTGCTATTTTTCATA GTTTTTCGATTAAAAATATTTTTATTGAAAAAAACCCAAAAAATATTTTTAAAAAAACTTAAATT CGATTAAAAAAATCCGCGAAATTCGAAATTACAGTACTCCTTGAAGGTGCACACCTTTTCGCTTT TAACTAAAATTTTCGCGTCGAGACCAGGTACCGTATTTTTAGCGCTAAAATCACAAAATTTCGTG TCTTTGGCTACATATGAGAACGACTACACGCAAGAAAGATAACCAAAGTGTAGCCAGCCGGTGGT GAGAGAGCACTATATCAGTGGAGACGCAGACGTATGTCTCTCGTTTCTCCTGATGAGTGTATCAC ACGTTCCATACATTATTATTTGTATTTTTTCCCGACGTTTTCTGT Right flanking sequence: Indices 10566129 -- 10566628 ATACAGATTACTCCGCCCAGAGACACAGGCCAAAATGCATCGAATTGGCAACGCTGTCAGGTAAT TCTTTTTGTGTGTTCGGGAAAGTTCAAATTTATTTTTAAATTCCCCACTTTTAATTTTTTTCGAT AGTCGAAAAAACTATGCTAATCAGAAAATTAGGAACTCTTCAGTTTAAAAAAAAATTTTCGACCT TATTTTTTTTCTGAAAATGTCATTTTTTCTATTACCAAAAAATAAAATTTCAATATTTTCTCCAA AAAAACCTTTTAAAAATCAAATAACCGCACGCTTTTTTCATGTTAAAAATTTTTTTTTGTAAAAA TCAAAATTTTCCAGAATGGCTTCATCCTCGTCGGCAAACGCCACAATCACCGCCAGACACACACA ATACAGCCACGCAAAGACGGGCGGTTTCAGTCAGACGGGACCCACACTGCACAATCCTTATAAGT TCGTTAATTGGTTTTGAAAATTTTTAAAAATTCAAATTGTATTAC Found at i:10566443 original size:17 final size:16 Alignment explanation
Indices: 10566421--10566454 Score: 45 Period size: 17 Copynumber: 2.1 Consensus size: 16 10566411 AACCGCACGC 10566421 TTTTTTCATGTTAAAAA 1 TTTTTTCATG-TAAAAA ** 10566438 TTTTTTTTTGTAAAAA 1 TTTTTTCATGTAAAAA 10566454 T 1 T 10566455 CAAAATTTTC Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 16 7 0.47 17 8 0.53 ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59 Consensus pattern (16 bp): TTTTTTCATGTAAAAA Left flanking sequence: Indices 10565921 -- 10566420 AATTTCGTGTCTTTGGCTACATATGAGAACGACTACACGCAAGAAAGATAACCAAAGTGTAGCCA GCCGGTGGTGAGAGAGCACTATATCAGTGGAGACGCAGACGTATGTCTCTCGTTTCTCCTGATGA GTGTATCACACGTTCCATACATTATTATTTGTATTTTTTCCCGACGTTTTCTGTTTTATTGGTCA TTTATTTGCCATTATACAGATTACTCCGCCCAGAGACACAGGCCAAAATGCATCGAATTGGCAAC GCTGTCAGGTAATTCTTTTTGTGTGTTCGGGAAAGTTCAAATTTATTTTTAAATTCCCCACTTTT AATTTTTTTCGATAGTCGAAAAAACTATGCTAATCAGAAAATTAGGAACTCTTCAGTTTAAAAAA AAATTTTCGACCTTATTTTTTTTCTGAAAATGTCATTTTTTCTATTACCAAAAAATAAAATTTCA ATATTTTCTCCAAAAAAACCTTTTAAAAATCAAATAACCGCACGC Right flanking sequence: Indices 10566455 -- 10566954 CAAAATTTTCCAGAATGGCTTCATCCTCGTCGGCAAACGCCACAATCACCGCCAGACACACACAA TACAGCCACGCAAAGACGGGCGGTTTCAGTCAGACGGGACCCACACTGCACAATCCTTATAAGTT CGTTAATTGGTTTTGAAAATTTTTAAAAATTCAAATTGTATTACCCGGTCTCGTCGCGACAATTG TTTTTAATCAAAAAAGGCATGCGCCTTTAAAGAGTACTGTAGTTTCAAAATTTGCGGATTAAAAA AAACGATTCTCTGTAATTTTTCGATGAAAAATATATTCACTTGTTTCGAAACCTGGAATAATGTA ATGTAAAAAAAGGAAAATCGATTAAAAAAGTCCGCAATGTTTCAAGTTACAGTACTCTTTAAAAG CGCACACCATTTTCATATAAAATAAAAAATGTTTCGCGTCGAGACCGGATACCGTATATTTGGCG CAAAAAACACAAAATTTGAATAAAAAAGTTTTATAATTTTAAATT Found at i:10567878 original size:13 final size:13 Alignment explanation
Indices: 10567856--10567891 Score: 58 Period size: 13 Copynumber: 2.8 Consensus size: 13 10567846 AGTGGTTGTG * 10567856 TCGGTTTACGGGC 1 TCGATTTACGGGC 10567869 TCGATTTACGGGC 1 TCGATTTACGGGC * 10567882 CCGATTTACG 1 TCGATTTACG 10567892 AAACCAATTT Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 13 21 1.00 ACGTcount: A:0.14, C:0.25, G:0.31, T:0.31 Consensus pattern (13 bp): TCGATTTACGGGC Left flanking sequence: Indices 10567356 -- 10567855 TATCGAAATTTGGCGACCGCATAACATCAGAAGTCGAGCATCTCGGGAGACAAGCAGAACTCGAA CAACCTCGTCTCGAACATCAAGATGCTTGGGGAAAACGAGTTGATAAACTGATTGTGTGCAATGA GTGGCACAAATTGAAACAAATTTGTGCAGAAGAAGGAGTGATTAGTATTGGATACGAAGATTCTG TTGATCCATTTGTTCGGAGAATTCATCAAGTTGCAAAGCTTTTCCTATTCTCTCCATCTGCTGGA TTAGTTTCCTGTCCGATGGCTATGACTGATGGAGCTGTTAAAACACTTACTGTAGGTCAAAAATA TTTGATACTGGCAGAAAAGCCGAAATTTCAAATTTAAAATAAAAAAGCGTATATTATTACGGGGA CAAAAAATGTTAAAAATGCGTATTGCACAACATATTTGACGCGCAAAATATAACTATATCTCGCA GCGAAAACTACAGTAACCCTTTAAATGACTACTGTAGTGGTTGTG Right flanking sequence: Indices 10567892 -- 10568391 AAACCAATTTTAACAGCGGTTTTCAATTTTCTGTAGTTTTTTTTTGCTGTATTTTTATACATTAT CGATTAATAAATTATTTCCGTATATTTTGATATTTTAACGCTGGTGTCGATTTACGGAACTCAGG TTTTAATCGATAAAATGTCTTTTAAAAATAAAGAACATTAAATACAGCTACAGTAATTATTTAAG GAATTACTGTAGTTTTCGCTGCGAGATATTTTGCGCGTCAAATATGTTGTGCAGTACGCATTCTC AGAATTTTGTATTCCCGATTAATACATATTATTACTAGAACAATAAATCATGAGAATGCGTACTT GGTGCATCTTATTTGACGCGCGATATCTCTTAGCGAGAACAGTTTTCGCTAAGAGATATCGCGCG TCAAATAAAATGCACCAAGTACGCATTCTCATGATTTATTGTTCCCGTAAAACTGTTAAATCTCT ATTAAATTTCTAAAATTTTCAATTTTTTTCAAAAAAATTATTAAA Found at