TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:1064504 original size:31 final size:31 Alignment explanation
Indices: 1064442--1064613 Score: 102 Period size: 31 Copynumber: 5.6 Consensus size: 31 1064432 TCAAAATTGC * * ** 1064442 TCAAAATT-CACAATTTTTACGAATTTAAGG 1 TCAAAATTGCACAATTTTCAAGTTTTTAAGG * * * 1064472 TCGAAATTGCAGAATTTTCAAGTTTTTCAGG 1 TCAAAATTGCACAATTTTCAAGTTTTTAAGG ** * * * ** 1064503 TCAAAATAACACATTTTTGACGTTTTTTGGG 1 TCAAAATTGCACAATTTTCAAGTTTTTAAGG * * * * * ** 1064534 TCAAAATTGCCCATTTTTAACGATTTTGTGG 1 TCAAAATTGCACAATTTTCAAGTTTTTAAGG ** * ** * * 1064565 TCAATTTCGACCGATTTTCACAATTTTT-AGG 1 TCAAAATTGCACAATTTTCA-AGTTTTTAAGG * 1064596 TCAAAAATCGC-CAATTTT 1 TC-AAAATTGCACAATTTT 1064614 TTAAAATTCC Statistics Matches: 101, Mismatches: 38, Indels: 5 0.70 0.26 0.03 Matches are distributed among these distances: 30 7 0.07 31 85 0.84 32 9 0.09 ACGTcount: A:0.31, C:0.16, G:0.14, T:0.40 Consensus pattern (31 bp): TCAAAATTGCACAATTTTCAAGTTTTTAAGG Left flanking sequence: Indices 1063942 -- 1064441 TTTTTTTGACTGCAAATTGGTGGTAAAATTTAAGTAATTTTCAAGTCAAAAATTGTGAAAAAAAG GAGACAATTGCGACTTTTTTTTTTAATTTTCACCGTAAATCGACACAAGTTTTGTATATTTACGG GGACATCAAAAATTTCTTATTTTCAACGATTTTCGGGTCAATTTTAACCGATTTCCACGATTTTT GGCTCAAAAATTGCCCAATTTTTTGTACATTTCTAACACCTTGGCTTTGTGTGGATTTACACGAC GCATTTTTCGCATTTTTTTGAAAACGAATTTTAGGATCAAAAATTCACAATTTTTACGAATTTAC GACGGTCGAAATTGCAGAATTTTCAAGTTTTTCAGGTCAAAATTACTCAATTTTTACGATTTCGG CGTCGAAATTTATTATTTTCAACGTTTTTAGGGTCAAAATTCACCAATTTTAATGTTTTTGGGTC AATTTTAACCGATTTTCACGATTTTTTTTTGTGGGTCAAAATTGC Right flanking sequence: Indices 1064614 -- 1065113 TTAAAATTCCCTCTACCTTCCCAACACCTGGAACCGGATGATCCTCATACGGTCTTGGAATTTCC AACGAGCGAACAATTCCATATTTTGAGCATTCATCGCGTACATCCTCCAGAATCTCTTCGTACTC ATCATCAGCTTTCAGCTCATCCTCAGTCACCATATTCATGAGACAAAGGATCTCAGTGGCTCGGC CGGCTCCTTGGGAGAGATCAATTCCGGCAATTGCTGACGCAGAGTTCGGCAGATTTGTGTTATGA CGTTGTTGATTAGCACAGGCAAGTTGAACGACGAGCTGCTTGTCGCCGAGTTGCATACCGTTGAG CCCGGCGATGGCCTGCAAAAATTAGGCTTAAAACGGCTTAAATCATCGATCGATTTTTCCAGCCA TTTATAGCTTAAAAATCGAATTTTTACCATTTCAAGACACTGAATTTTACAAAATTTTGCACAAA TTGGTTGAAAATCAGGTTACGTGGGGGTAAAAAGTGACGGAGAAT Found at i:1065061 original size:10 final size:11 Alignment explanation
Indices: 1065046--1065070 Score: 36 Period size: 10 Copynumber: 2.4 Consensus size: 11 1065036 CAAGACACTG 1065046 AATTTTACA-A 1 AATTTTACACA * 1065056 AATTTTGCACA 1 AATTTTACACA 1065067 AATT 1 AATT 1065071 GGTTGAAAAT Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 10 8 0.62 11 5 0.38 ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40 Consensus pattern (11 bp): AATTTTACACA Left flanking sequence: Indices 1064546 -- 1065045 ATTTTTAACGATTTTGTGGTCAATTTCGACCGATTTTCACAATTTTTAGGTCAAAAATCGCCAAT TTTTTAAAATTCCCTCTACCTTCCCAACACCTGGAACCGGATGATCCTCATACGGTCTTGGAATT TCCAACGAGCGAACAATTCCATATTTTGAGCATTCATCGCGTACATCCTCCAGAATCTCTTCGTA CTCATCATCAGCTTTCAGCTCATCCTCAGTCACCATATTCATGAGACAAAGGATCTCAGTGGCTC GGCCGGCTCCTTGGGAGAGATCAATTCCGGCAATTGCTGACGCAGAGTTCGGCAGATTTGTGTTA TGACGTTGTTGATTAGCACAGGCAAGTTGAACGACGAGCTGCTTGTCGCCGAGTTGCATACCGTT GAGCCCGGCGATGGCCTGCAAAAATTAGGCTTAAAACGGCTTAAATCATCGATCGATTTTTCCAG CCATTTATAGCTTAAAAATCGAATTTTTACCATTTCAAGACACTG Right flanking sequence: Indices 1065071 -- 1065570 GGTTGAAAATCAGGTTACGTGGGGGTAAAAAGTGACGGAGAATTTGAAGTTTAGCACCAAAAATA TGGAAATTTACAACTTTTCGCGGAAAAATATTGAAAATTTGGGTGCAATTTTGAACATTTTGGCG ATTTTTCGTAGTTTTTCAGCAGGAAAATCATGGACTTTTCTGTGCAATTTTACCCCACTGTGACA CCTTTTTTATAGTCTGTAACTCAATTTGTGAATTTCGCTGGGTTACTGTAGCTCCAAAAGTACGC AAACACTGAATTTTACGAAATTTTGCATAAATTGGCTCAAAAATTTTCCGAAAATCCGAAGAAAA TCGGCTTAAAATCGATTTTTCCAGCAATTTTTAGCTTAAAAATCGAATTTTTTGGGGATTTTTAC CATTTCAAGGGAGTTACTGTAGCTCCAAAAGTACGCAAACACTGAATTTTACGAAATATTGCACA AATTGGTTGAAAATCAGGTTACGTGGGTAAAAAGTGACGGAGAAT Found at i:1065668 original size:11 final size:11 Alignment explanation
Indices: 1065634--1065672 Score: 48 Period size: 11 Copynumber: 3.5 Consensus size: 11 1065624 AAAATTTGGT 1065634 ATTTTTCAGCA 1 ATTTTTCAGCA * ** 1065645 CTTTTATGTGCA 1 ATTTT-TCAGCA 1065657 ATTTTTCAGCA 1 ATTTTTCAGCA 1065668 ATTTT 1 ATTTT 1065673 GGCGATTTTA Statistics Matches: 21, Mismatches: 6, Indels: 2 0.72 0.21 0.07 Matches are distributed among these distances: 11 13 0.62 12 8 0.38 ACGTcount: A:0.23, C:0.15, G:0.10, T:0.51 Consensus pattern (11 bp): ATTTTTCAGCA Left flanking sequence: Indices 1065134 -- 1065633 TATGGAAATTTACAACTTTTCGCGGAAAAATATTGAAAATTTGGGTGCAATTTTGAACATTTTGG CGATTTTTCGTAGTTTTTCAGCAGGAAAATCATGGACTTTTCTGTGCAATTTTACCCCACTGTGA CACCTTTTTTATAGTCTGTAACTCAATTTGTGAATTTCGCTGGGTTACTGTAGCTCCAAAAGTAC GCAAACACTGAATTTTACGAAATTTTGCATAAATTGGCTCAAAAATTTTCCGAAAATCCGAAGAA AATCGGCTTAAAATCGATTTTTCCAGCAATTTTTAGCTTAAAAATCGAATTTTTTGGGGATTTTT ACCATTTCAAGGGAGTTACTGTAGCTCCAAAAGTACGCAAACACTGAATTTTACGAAATATTGCA CAAATTGGTTGAAAATCAGGTTACGTGGGTAAAAAGTGACGGAGAATTAGAAGTTTAGCACCAAA AATATGGAAATTTACAACTTTTCGCGAAAAAGTGGAAAATTTGGT Right flanking sequence: Indices 1065673 -- 1066172 GGCGATTTTACGTTTGTTTTCACTATGAAAATCGACTTTTCTGTGCAATTTTACCCACTTTACCA TCTTTTTCTAAGTCTCTAGCTCAATTTTTGAATTTCAAGGGTTACTGTAGCCCCAAAAGTACGCA AACACGGAATTTTACGAAATGTCGCGGAAATTGGCTGAAAACCGGGTTTTTGCGGGGGTAAAAAG TGATGGAGAAGTCGAATTTTGTATTGAAAAATTGTGAAAATCTCAAGTTTTCGGGGAAAAAATGA AAATTTGGGCATAGCTTCCGCATGTCCGAGTGACAAATGTGCTCTATTGTCAAATTGTTGGCAGA AATACGGTATTTATTCACATTTTCAGCCAATTTAAGGCTGAAAATGCAGATAAATTCAGTTTTTA TGCCATCAATCCGAGTAGAAGCACATGAGTCACGGGATAATCAATAAATTCCTACATTTTCGAAA ATCCGAAGAAAATCGGTTCAAAATAGAATTTTCCAGCAATTTTTA Found at i:1066673 original size:13 final size:13 Alignment explanation
Indices: 1066657--1066682 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 1066647 GCTATTTTTG * 1066657 AAAATAGCTATTT 1 AAAAGAGCTATTT 1066670 AAAAGAGCTATTT 1 AAAAGAGCTATTT 1066683 CGGCGATTTT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35 Consensus pattern (13 bp): AAAAGAGCTATTT Left flanking sequence: Indices 1066157 -- 1066656 TTTCCAGCAATTTTTAGCTTGAATGTCGAATTTTTCGGGGATTTTTACTATTTGCAGGGTTACTG TAGCTCCAAAAGTACGCAAACACCGAATTTTGCGAAATTTCTGCAATAATTCGAATTCTCCATCA ATTTTCGCGTAATTTTAACCCATTTTTCAGTCAATTTGTGCATAATTTCGTAAAGTTCCGTGTTT ACGTACTTTTGGAGCTACAGTAACCCAGCGAAATTCAAAAATTGAGCTACACACACACTCTAAAA AAGGTGTTATAGCCGGTAAAAATCCGCAGAAAATAGCCAAAATAGCTCAAATTTTCAAAGTTGCA CATAAAGATGCTGGAAAATGTCAAATTTTCCATTTAAAAAAAAAAAAAATGGCTCAAAAAGTGCG AAAATTGATGGAGAATTCGAATTTTAGCACCAAAAATTTTGAAAATCACTACTTTTCGCGGAAAA AATGGAAAATTTGGTATTTTCCAGCACTTTTATGCGCTATTTTTG Right flanking sequence: Indices 1066683 -- 1067182 CGGCGATTTTCTGCAATTTTTCAAACGAAAATCGAATTTTCTGCGGATTTTTACCGCTATAACAC CTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTGTAGCGCCAAAAATACGCAA ACACCAAATTTTGCGAAATTTTGCACAAATTGGCTCAGAAATGGCTCAAAAAGTGTGAAAATTGA TGGAGAATTTGAATTTTTACTGAAAACCTGGGAAAATTACAACTTTTTGCGAAAAAGTGAGAATT AGAGTGCAATTTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTG CGTATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTA CTGTAGCGCCAAAAATACGCAAACACCAAATTTTGCGAAATTTTGCACAAATTGGCTCAGAAATG GCTCAAAAAGTGTGAAAATTGATGGAGAATTTGAATTTTTACTGA Found at i:1066857 original size:11 final size:11 Alignment explanation
Indices: 1066839--1066864 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 1066829 AATTTTGCAC * 1066839 AAATTGGCTCA 1 AAAATGGCTCA * 1066850 GAAATGGCTCA 1 AAAATGGCTCA 1066861 AAAA 1 AAAA 1066865 GTGTGAAAAT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19 Consensus pattern (11 bp): AAAATGGCTCA Left flanking sequence: Indices 1066339 -- 1066838 AAGTTCCGTGTTTACGTACTTTTGGAGCTACAGTAACCCAGCGAAATTCAAAAATTGAGCTACAC ACACACTCTAAAAAAGGTGTTATAGCCGGTAAAAATCCGCAGAAAATAGCCAAAATAGCTCAAAT TTTCAAAGTTGCACATAAAGATGCTGGAAAATGTCAAATTTTCCATTTAAAAAAAAAAAAAATGG CTCAAAAAGTGCGAAAATTGATGGAGAATTCGAATTTTAGCACCAAAAATTTTGAAAATCACTAC TTTTCGCGGAAAAAATGGAAAATTTGGTATTTTCCAGCACTTTTATGCGCTATTTTTGAAAATAG CTATTTAAAAGAGCTATTTCGGCGATTTTCTGCAATTTTTCAAACGAAAATCGAATTTTCTGCGG ATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTG TAGCGCCAAAAATACGCAAACACCAAATTTTGCGAAATTTTGCAC Right flanking sequence: Indices 1066865 -- 1067364 GTGTGAAAATTGATGGAGAATTTGAATTTTTACTGAAAACCTGGGAAAATTACAACTTTTTGCGA AAAAGTGAGAATTAGAGTGCAATTTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAA ATCGTATTTTCTGCGTATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGA ATTTTCGGGGTTACTGTAGCGCCAAAAATACGCAAACACCAAATTTTGCGAAATTTTGCACAAAT TGGCTCAGAAATGGCTCAAAAAGTGTGAAAATTGATGGAGAATTTGAATTTTTACTGAAAACCTG GGAAAATTACAACTTTTTGCGAAAAAGTGAGAATTAGAGTGCAATTTTAGCAATTTTGGCGTATT TAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTGCGTATTTTTACCGCTATAACACCTTTTTTA GAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTGTAACGCC Found at i:1067139 original size:11 final size:11 Alignment explanation
Indices: 1067121--1067146 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 1067111 AATTTTGCAC * 1067121 AAATTGGCTCA 1 AAAATGGCTCA * 1067132 GAAATGGCTCA 1 AAAATGGCTCA 1067143 AAAA 1 AAAA 1067147 GTGTGAAAAT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19 Consensus pattern (11 bp): AAAATGGCTCA Left flanking sequence: Indices 1066621 -- 1067120 TTTGGTATTTTCCAGCACTTTTATGCGCTATTTTTGAAAATAGCTATTTAAAAGAGCTATTTCGG CGATTTTCTGCAATTTTTCAAACGAAAATCGAATTTTCTGCGGATTTTTACCGCTATAACACCTT TTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTGTAGCGCCAAAAATACGCAAACA CCAAATTTTGCGAAATTTTGCACAAATTGGCTCAGAAATGGCTCAAAAAGTGTGAAAATTGATGG AGAATTTGAATTTTTACTGAAAACCTGGGAAAATTACAACTTTTTGCGAAAAAGTGAGAATTAGA GTGCAATTTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTGCGT ATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTG TAGCGCCAAAAATACGCAAACACCAAATTTTGCGAAATTTTGCAC Right flanking sequence: Indices 1067147 -- 1067646 GTGTGAAAATTGATGGAGAATTTGAATTTTTACTGAAAACCTGGGAAAATTACAACTTTTTGCGA AAAAGTGAGAATTAGAGTGCAATTTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAA ATCGTATTTTCTGCGTATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGA ATTTTCGGGGTTACTGTAACGCCTAAAATACGCAAACACCGAAATTTACGAAATTTCGCGGAAAT TGGCCCAAAAATGGCCCAAAAAGTGCGAAAATTGATGGCAAATTCGACTTTCAGCACTTTTTGGC TGAAAAATTACGCAAAAAAGCTAGAAAAATCCGGTTTTAACGATATTTTCTTAGTTTTTGAGCCA TTTTCACGATTTTTTAGCCAAAAATGCTTACAGTTCACAATTTTGACTAGTTTTAAAGATTTTTG GGTCAAAATCGCTCAATTTTCACTCAAAAAGTTGCATAATTGCCA Found at i:1067428 original size:12 final size:11 Alignment explanation
Indices: 1067403--1067428 Score: 45 Period size: 11 Copynumber: 2.4 Consensus size: 11 1067393 AATTTCGCGG * 1067403 AAATTGGCCCA 1 AAAATGGCCCA 1067414 AAAATGGCCCA 1 AAAATGGCCCA 1067425 AAAA 1 AAAA 1067429 GTGCGAAAAT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.50, C:0.23, G:0.15, T:0.12 Consensus pattern (11 bp): AAAATGGCCCA Left flanking sequence: Indices 1066903 -- 1067402 ACCTGGGAAAATTACAACTTTTTGCGAAAAAGTGAGAATTAGAGTGCAATTTTAGCAATTTTGGC GTATTTAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTGCGTATTTTTACCGCTATAACACCTT TTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTGTAGCGCCAAAAATACGCAAACA CCAAATTTTGCGAAATTTTGCACAAATTGGCTCAGAAATGGCTCAAAAAGTGTGAAAATTGATGG AGAATTTGAATTTTTACTGAAAACCTGGGAAAATTACAACTTTTTGCGAAAAAGTGAGAATTAGA GTGCAATTTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTGCGT ATTTTTACCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTG TAACGCCTAAAATACGCAAACACCGAAATTTACGAAATTTCGCGG Right flanking sequence: Indices 1067429 -- 1067928 GTGCGAAAATTGATGGCAAATTCGACTTTCAGCACTTTTTGGCTGAAAAATTACGCAAAAAAGCT AGAAAAATCCGGTTTTAACGATATTTTCTTAGTTTTTGAGCCATTTTCACGATTTTTTAGCCAAA AATGCTTACAGTTCACAATTTTGACTAGTTTTAAAGATTTTTGGGTCAAAATCGCTCAATTTTCA CTCAAAAAGTTGCATAATTGCCATAAATTTAAAATTAAATGGGTGAAAATTTATATTTTTGGGTC AAAATCGTGCAATTTTCACGATTTTTCAAGTCTTTGGCCGAAATTGGCTCAATTTTCACAATTTT AGGGTCAAAATCGCTAAATTTTCACATTTTCCAGCTCAAAATGCTCCAAAAAAAAAAATGATGTT ACCTGATCAGTGAGAGTTGGGTCCAAATATTCGGCGAACGCGTATCCTTTGCTATTTCCTTGCGA ATCAACGTTCAACGAGAACGCCTTAAGCGGTCCAAATGAGCACAA Found at i:1067793 original size:31 final size:31 Alignment explanation
Indices: 1067735--1067795 Score: 80 Period size: 31 Copynumber: 2.0 Consensus size: 31 1067725 GCCGAAATTG * * * * 1067735 GCTCAATTTTCACAATTTTAGGGTCAAAATC 1 GCTAAATTTTCACAATTTCAAGCTCAAAATC * * 1067766 GCTAAATTTTCACATTTTCCAGCTCAAAAT 1 GCTAAATTTTCACAATTTCAAGCTCAAAAT 1067796 GCTCCAAAAA Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 31 24 1.00 ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36 Consensus pattern (31 bp): GCTAAATTTTCACAATTTCAAGCTCAAAATC Left flanking sequence: Indices 1067235 -- 1067734 TTTAGCAATTTTGGCGTATTTAGCGCGGGTTTTAGCATAAAAATCGTATTTTCTGCGTATTTTTA CCGCTATAACACCTTTTTTAGAGTTTCTAGCTCAAAACTTGAATTTTCGGGGTTACTGTAACGCC TAAAATACGCAAACACCGAAATTTACGAAATTTCGCGGAAATTGGCCCAAAAATGGCCCAAAAAG TGCGAAAATTGATGGCAAATTCGACTTTCAGCACTTTTTGGCTGAAAAATTACGCAAAAAAGCTA GAAAAATCCGGTTTTAACGATATTTTCTTAGTTTTTGAGCCATTTTCACGATTTTTTAGCCAAAA ATGCTTACAGTTCACAATTTTGACTAGTTTTAAAGATTTTTGGGTCAAAATCGCTCAATTTTCAC TCAAAAAGTTGCATAATTGCCATAAATTTAAAATTAAATGGGTGAAAATTTATATTTTTGGGTCA AAATCGTGCAATTTTCACGATTTTTCAAGTCTTTGGCCGAAATTG Right flanking sequence: Indices 1067796 -- 1068295 GCTCCAAAAAAAAAAATGATGTTACCTGATCAGTGAGAGTTGGGTCCAAATATTCGGCGAACGCG TATCCTTTGCTATTTCCTTGCGAATCAACGTTCAACGAGAACGCCTTAAGCGGTCCAAATGAGCA CAAAAGCTCTTTTACCTGAAAAAAATGAGCACATTTTTCAGAGTTTTTCGATTTTTAGTGGGAAA TAGGCACACAATTTTCGGCGGGGTCTCGAGAACCTGAATTTTGCAAGATTATTTGGGCTTCCAGT TGGGAGATTTCAGCCAATTTTGCGGCCTGAGATGGTGCCTAAAAGTGCCTAAAAATAGCCTAAAA TCTGGAAATTTTGTGCCTAAAATTGCTGAAAAATCTGGAAATTTTCTGTAAAAAATGGGCAATTT TCGTTTCCACAAAACGACGGGGAGGCAGTGTGGCTGGTGGACAGCAGGAGTGTGCTGAAACACAC TCAAAATTAGACAATTTTTTTTAGACCAAAAGCCCGCGCGCCGGC Found at i:1068142 original size:33 final size:33 Alignment explanation
Indices: 1068100--1068165 Score: 95 Period size: 33 Copynumber: 2.0 Consensus size: 33 1068090 GTGCCTAAAA * 1068100 GTGCCTAAAAATAGC-CTAAAATCTGGAAATTTT 1 GTGCCT-AAAATAGCTCAAAAATCTGGAAATTTT * * 1068133 GTGCCTAAAATTGCTGAAAAATCTGGAAATTTT 1 GTGCCTAAAATAGCTCAAAAATCTGGAAATTTT 1068166 CTGTAAAAAA Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 32 7 0.24 33 22 0.76 ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32 Consensus pattern (33 bp): GTGCCTAAAATAGCTCAAAAATCTGGAAATTTT Left flanking sequence: Indices 1067600 -- 1068099 TGGGTCAAAATCGCTCAATTTTCACTCAAAAAGTTGCATAATTGCCATAAATTTAAAATTAAATG GGTGAAAATTTATATTTTTGGGTCAAAATCGTGCAATTTTCACGATTTTTCAAGTCTTTGGCCGA AATTGGCTCAATTTTCACAATTTTAGGGTCAAAATCGCTAAATTTTCACATTTTCCAGCTCAAAA TGCTCCAAAAAAAAAAATGATGTTACCTGATCAGTGAGAGTTGGGTCCAAATATTCGGCGAACGC GTATCCTTTGCTATTTCCTTGCGAATCAACGTTCAACGAGAACGCCTTAAGCGGTCCAAATGAGC ACAAAAGCTCTTTTACCTGAAAAAAATGAGCACATTTTTCAGAGTTTTTCGATTTTTAGTGGGAA ATAGGCACACAATTTTCGGCGGGGTCTCGAGAACCTGAATTTTGCAAGATTATTTGGGCTTCCAG TTGGGAGATTTCAGCCAATTTTGCGGCCTGAGATGGTGCCTAAAA Right flanking sequence: Indices 1068166 -- 1068665 CTGTAAAAAATGGGCAATTTTCGTTTCCACAAAACGACGGGGAGGCAGTGTGGCTGGTGGACAGC AGGAGTGTGCTGAAACACACTCAAAATTAGACAATTTTTTTTAGACCAAAAGCCCGCGCGCCGGC ACGGCTTTTTTGGGGGAAAATTGGAAAAAATTTGGGCAGAGGTTCCCCGGGAAAGTGGTCAAATG TGCTCGGTGAGCAATTTTGAAGCCAAAAATTCCAAATTTTTGCATTTTTTAACGCAAAAATTTGG AATTTTCACCTCAAAATCACCGATAGAGCACATTTGCCACGGAAGTTTAAATTTCTGTATGAATT GTGGCCGAGTTTTTTCAAAACTCGGCCACATAGCTATTTAGAGTGGAAAATTCCAATATTTTGGG AATTTTCAACTTGAAATCGCTATTGAAGCACACTTGAAGTTTAATGTACAGTGGCCGAGTTTTTT CGCGGCCACGTAAGTAAAACTTCCTTAAAACGTACTTTTGGCAAA Found at i:1068784 original size:23 final size:22 Alignment explanation
Indices: 1068735--1068786 Score: 62 Period size: 22 Copynumber: 2.4 Consensus size: 22 1068725 GTGGAAAATT * * * ** 1068735 CAAAATTTTTGCATTTTCCATG 1 CAAAAATTTGGAATTTTCCAAC 1068757 CAAAAATTTGGAATTTTCCAAC 1 CAAAAATTTGGAATTTTCCAAC * 1068779 CGAAAATT 1 CAAAAATT 1068787 GCCGATAGAG Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 22 24 1.00 ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37 Consensus pattern (22 bp): CAAAAATTTGGAATTTTCCAAC Left flanking sequence: Indices 1068235 -- 1068734 GTGTGCTGAAACACACTCAAAATTAGACAATTTTTTTTAGACCAAAAGCCCGCGCGCCGGCACGG CTTTTTTGGGGGAAAATTGGAAAAAATTTGGGCAGAGGTTCCCCGGGAAAGTGGTCAAATGTGCT CGGTGAGCAATTTTGAAGCCAAAAATTCCAAATTTTTGCATTTTTTAACGCAAAAATTTGGAATT TTCACCTCAAAATCACCGATAGAGCACATTTGCCACGGAAGTTTAAATTTCTGTATGAATTGTGG CCGAGTTTTTTCAAAACTCGGCCACATAGCTATTTAGAGTGGAAAATTCCAATATTTTGGGAATT TTCAACTTGAAATCGCTATTGAAGCACACTTGAAGTTTAATGTACAGTGGCCGAGTTTTTTCGCG GCCACGTAAGTAAAACTTCCTTAAAACGTACTTTTGGCAAAAATTTGGGCAGAGGTTCCCCGGGA AAGTGGTCAAATGTGCTCCCGGTGAGCAATTTCGGGTGGAAAATT Right flanking sequence: Indices 1068787 -- 1069286 GCCGATAGAGCATATTTGCCACGGAAAATTGATATTTGGACAATTTTCTGTCATTTTTTTTGGGC TTTTGGGCTCATTTAACGCATGTTTAAGCCGTCGTTTTGGCCTTTTTTTGGGAAATCTGGAGGTT TCTACGGCCATTTTGAGCCAATTTTCAAGCGTGTTCAGGGTATCTATAACCGTTTAGAGCCAATT TAGAGGCTTTTCGGATACTTTTAGGCTTCAGGGCCGTGAGAAGAACCATTTTCAGCAAATTTTTA TAGCTTATGGGTAACTTATAGGCTAATTTTCTAATTTTTAGTATATTCGAGCAAAATTCGAAGCT TTTTGGTTAACTTTAGCCCAATTTTCAGGCTTTTTGGACATGTAGAACCATTTTAAGCCAAATTT TAGACTTTTCGGGTATCTAGTTCCGTTTTGAGCTAAATTTCAGGCTATTGGGTCAATATTAGCCA AATTTTGAGCTTTCAAGGTACTTGGACGATTTCAAGCCAATTATT Found at i:1069544 original size:71 final size:72 Alignment explanation
Indices: 1069463--1069798 Score: 286 Period size: 70 Copynumber: 4.8 Consensus size: 72 1069453 CATAGTTCCA * * * * * * 1069463 TTTTAGGCCAAATTTTAGGCTTTTGGACCAATTTAAAGCCAAATTTTGAG-CTTTTCGGATATCT 1 TTTTAAGCCAAATTTAAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTTTCGGATATCT ** 1069527 AGTCCCG 66 AGAACCG * * * * 1069534 TTTTAAGCCAAATTTCAAAGCTTTTGGGTC-ATTTTAAG-CTAGTTTTCAGACTTTT-GGAGTGT 1 TTTTAAGCCAAATTT-AAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTTTCGGA-TAT **** * 1069596 -TCCGGCCA 64 CTAGAACCG ** * * * * 1069604 TCGTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTAGGCC-AATTTTCAGACTTTTAGGGTATC 1 TTTTAAGCCAAATTT-AAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTTTCGGATATC 1069668 TAGAACCG 65 TAGAACCG * * ** * * * * 1069676 TTTTAAGCCAAATTTCAGGCTTTTGGG-GGATATT-AGCCAAAGTTCCAGA-TTTTCGGGTATCT 1 TTTTAAGCCAAATTTAAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTTTCGGATATCT 1069738 AGAACCG 66 AGAACCG * * * ** * * * 1069745 TTTTATGCCGAATTTTGAAGCTTTTGGG-GGATATT-AGCCAATTTTTCAGGCTTT 1 TTTTAAGCC-AAATTTAAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTT 1069799 CGGGACAATT Statistics Matches: 207, Mismatches: 48, Indels: 20 0.75 0.17 0.07 Matches are distributed among these distances: 69 30 0.14 70 85 0.41 71 63 0.30 72 29 0.14 ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38 Consensus pattern (72 bp): TTTTAAGCCAAATTTAAAGCTTTTGGGCCAATTTTAAGCCAAATTTTCAGACTTTTCGGATATCT AGAACCG Left flanking sequence: Indices 1068963 -- 1069462 TAACCGTTTAGAGCCAATTTAGAGGCTTTTCGGATACTTTTAGGCTTCAGGGCCGTGAGAAGAAC CATTTTCAGCAAATTTTTATAGCTTATGGGTAACTTATAGGCTAATTTTCTAATTTTTAGTATAT TCGAGCAAAATTCGAAGCTTTTTGGTTAACTTTAGCCCAATTTTCAGGCTTTTTGGACATGTAGA ACCATTTTAAGCCAAATTTTAGACTTTTCGGGTATCTAGTTCCGTTTTGAGCTAAATTTCAGGCT ATTGGGTCAATATTAGCCAAATTTTGAGCTTTCAAGGTACTTGGACGATTTCAAGCCAATTATTT GAACTTTTTGTGGCAATTTTAAGCCAAATTTCAAGCTTTTAGGATATCTAGACAGGTTTTAAGCC TAATTTTAAGCTTTTCGGTCATTTTTAGGCCAAATTTCAGGCGTTAGGGGTGTCCAGGACTGTTT TGAGCCAAATTTCAAACTTTTGGGGTATCTAGTTCCATAGTTCCA Right flanking sequence: Indices 1069799 -- 1070298 CGGGACAATTTTAAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGC CATTTTTAGGCCAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAGGCTTT TGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTCCT GTTTTAAGCCAAATTTTCAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCAAATTTTAAAGCTTT TGGGCCATTTTTAGGTCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTC AGCTTTTCAGGTAACTAGTACCGCTTTAAGCCAAATTTTAAGCTTTTCAGGTATCTAGTCCCGTT TTAAGCCAAATTTTAAAGCTTTTCGGGTGACTAGTACCATTTTAAGCCAAATTTTAAGCTTTTTG GGTCAATTATCGCCAAATTTTTCAAATTTTTAGGGTATCTGGTTG Found at i:1069644 original size:11 final size:11 Alignment explanation
Indices: 1069625--1069650 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 1069615 ATTTCAAAGC * * 1069625 TTTTGGGCCAT 1 TTTTAGGCCAA 1069636 TTTTAGGCCAA 1 TTTTAGGCCAA 1069647 TTTT 1 TTTT 1069651 CAGACTTTTA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.15, C:0.15, G:0.19, T:0.50 Consensus pattern (11 bp): TTTTAGGCCAA Left flanking sequence: Indices 1069125 -- 1069624 TAGCCCAATTTTCAGGCTTTTTGGACATGTAGAACCATTTTAAGCCAAATTTTAGACTTTTCGGG TATCTAGTTCCGTTTTGAGCTAAATTTCAGGCTATTGGGTCAATATTAGCCAAATTTTGAGCTTT CAAGGTACTTGGACGATTTCAAGCCAATTATTTGAACTTTTTGTGGCAATTTTAAGCCAAATTTC AAGCTTTTAGGATATCTAGACAGGTTTTAAGCCTAATTTTAAGCTTTTCGGTCATTTTTAGGCCA AATTTCAGGCGTTAGGGGTGTCCAGGACTGTTTTGAGCCAAATTTCAAACTTTTGGGGTATCTAG TTCCATAGTTCCATTTTAGGCCAAATTTTAGGCTTTTGGACCAATTTAAAGCCAAATTTTGAGCT TTTCGGATATCTAGTCCCGTTTTAAGCCAAATTTCAAAGCTTTTGGGTCATTTTAAGCTAGTTTT CAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAATTTCAAAGC Right flanking sequence: Indices 1069651 -- 1070150 CAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAA AGTTCCAGATTTTCGGGTATCTAGAACCGTTTTATGCCGAATTTTGAAGCTTTTGGGGGATATTA GCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAA ATTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTA AGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCT TTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTTCAGCTTTTCGGGTAACTAGTACCGTTTTAA GCCAAATTTTAAAGCTTTTGGGCCATTTTTAGGTCAATTTTCAGACTTTTAGGGTATCTAGAACC GTTTTAAGCCAAATTTTCAGCTTTTCAGGTAACTAGTACCGCTTT Found at i:1069800 original size:70 final size:70 Alignment explanation
Indices: 1069499--1069802 Score: 301 Period size: 70 Copynumber: 4.3 Consensus size: 70 1069489 ACCAATTTAA * ** * ** * 1069499 AGCCAAATTTTGAGCTTTTCGGATATCTAGTCCCGTTTTAAGCCAAATTTCAAAGCTTTTGGGTC 1 AGCCAAATTTTCAGACTTTCGGGTATCTAGAACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGGC * 1069564 ATTTT 66 ATATT ** * * * * **** * ** * 1069569 AAGCTAGTTTTCAGACTTTTGGAGTGT-TCCGGCCATCGTAAGCCAAATTTCAAAGCTTTTGGGC 1 AGCCAAATTTTCAGACTTTCGG-GTATCTAGAACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGG * 1069633 CATTTTT 65 CA-TATT * * * * 1069640 AGGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTC-AGGCTTTTGGGG 1 AGCCAAATTTTCAGAC-TTTCGGGTATCTAGAACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGG * 1069704 GATATT 65 CATATT * * * * * ** * 1069710 AGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGTTTTATGCCGAATTTTGAAGCTTTTGGGGG 1 AGCCAAATTTTCAGACTTTCGGGTATCTAGAACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGGC 1069775 ATATT 66 ATATT * * 1069780 AGCCAATTTTTCAGGCTTTCGGG 1 AGCCAAATTTTCAGACTTTCGGG 1069803 ACAATTTTAA Statistics Matches: 180, Mismatches: 49, Indels: 10 0.75 0.21 0.04 Matches are distributed among these distances: 69 31 0.17 70 94 0.52 71 33 0.18 72 22 0.12 ACGTcount: A:0.24, C:0.18, G:0.22, T:0.37 Consensus pattern (70 bp): AGCCAAATTTTCAGACTTTCGGGTATCTAGAACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGGC ATATT Left flanking sequence: Indices 1068999 -- 1069498 CTTTTAGGCTTCAGGGCCGTGAGAAGAACCATTTTCAGCAAATTTTTATAGCTTATGGGTAACTT ATAGGCTAATTTTCTAATTTTTAGTATATTCGAGCAAAATTCGAAGCTTTTTGGTTAACTTTAGC CCAATTTTCAGGCTTTTTGGACATGTAGAACCATTTTAAGCCAAATTTTAGACTTTTCGGGTATC TAGTTCCGTTTTGAGCTAAATTTCAGGCTATTGGGTCAATATTAGCCAAATTTTGAGCTTTCAAG GTACTTGGACGATTTCAAGCCAATTATTTGAACTTTTTGTGGCAATTTTAAGCCAAATTTCAAGC TTTTAGGATATCTAGACAGGTTTTAAGCCTAATTTTAAGCTTTTCGGTCATTTTTAGGCCAAATT TCAGGCGTTAGGGGTGTCCAGGACTGTTTTGAGCCAAATTTCAAACTTTTGGGGTATCTAGTTCC ATAGTTCCATTTTAGGCCAAATTTTAGGCTTTTGGACCAATTTAA Right flanking sequence: Indices 1069803 -- 1070302 ACAATTTTAAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGCCATT TTTAGGCCAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAGGCTTTTGGG GGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTCCTGTTT TAAGCCAAATTTTCAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCAAATTTTAAAGCTTTTGGG CCATTTTTAGGTCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTCAGCT TTTCAGGTAACTAGTACCGCTTTAAGCCAAATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAA GCCAAATTTTAAAGCTTTTCGGGTGACTAGTACCATTTTAAGCCAAATTTTAAGCTTTTTGGGTC AATTATCGCCAAATTTTTCAAATTTTTAGGGTATCTGGTTGTCAA Found at i:1069875 original size:11 final size:11 Alignment explanation
Indices: 1069856--1069881 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 1069846 ATTTCAAAGC * * 1069856 TTTTGGGCCAT 1 TTTTAGGCCAA 1069867 TTTTAGGCCAA 1 TTTTAGGCCAA 1069878 TTTT 1 TTTT 1069882 CAGCTTTTCG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.15, C:0.15, G:0.19, T:0.50 Consensus pattern (11 bp): TTTTAGGCCAA Left flanking sequence: Indices 1069356 -- 1069855 TTTTAAGCTTTTCGGTCATTTTTAGGCCAAATTTCAGGCGTTAGGGGTGTCCAGGACTGTTTTGA GCCAAATTTCAAACTTTTGGGGTATCTAGTTCCATAGTTCCATTTTAGGCCAAATTTTAGGCTTT TGGACCAATTTAAAGCCAAATTTTGAGCTTTTCGGATATCTAGTCCCGTTTTAAGCCAAATTTCA AAGCTTTTGGGTCATTTTAAGCTAGTTTTCAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAA TTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTA AGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGT TTTATGCCGAATTTTGAAGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTT AAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAGC Right flanking sequence: Indices 1069882 -- 1070381 CAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAAT TTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTTC AGCTTTTCGGGTAACTAGTACCGTTTTAAGCCAAATTTTAAAGCTTTTGGGCCATTTTTAGGTCA ATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTCAGCTTTTCAGGTAACTAG TACCGCTTTAAGCCAAATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAAGCCAAATTTTAAAG CTTTTCGGGTGACTAGTACCATTTTAAGCCAAATTTTAAGCTTTTTGGGTCAATTATCGCCAAAT TTTTCAAATTTTTAGGGTATCTGGTTGTCAAAAATTCGAAAAAAACCACAAAAAACCGTGCCGGC AGGGACGAAAAAATCGCGCGCAAAAAAAACGGCAAAAAGAGGAAA Found at i:1069920 original size:71 final size:68 Alignment explanation
Indices: 1069804--1069962 Score: 226 Period size: 71 Copynumber: 2.3 Consensus size: 68 1069794 GCTTTCGGGA * * * 1069804 CAATTTTAAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGCCATTT 1 CAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTC-AAGCTTTTGGGCCA-TA 1069869 TTAGGC 64 TTA-GC * ** 1069875 CAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATT 1 CAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAAGCTTTTGGGCCATATT 1069940 AGC 66 AGC ** 1069943 CAATTTTTCAGGCTTTCGGG 1 CAA-TTTTCAGCTTTTCGGG 1069963 ACAATTTTAA Statistics Matches: 79, Mismatches: 8, Indels: 4 0.87 0.09 0.04 Matches are distributed among these distances: 68 5 0.06 69 18 0.23 70 11 0.14 71 45 0.57 ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39 Consensus pattern (68 bp): CAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAAGCTTTTGGGCCATATT AGC Left flanking sequence: Indices 1069304 -- 1069803 TTTTAAGCCAAATTTCAAGCTTTTAGGATATCTAGACAGGTTTTAAGCCTAATTTTAAGCTTTTC GGTCATTTTTAGGCCAAATTTCAGGCGTTAGGGGTGTCCAGGACTGTTTTGAGCCAAATTTCAAA CTTTTGGGGTATCTAGTTCCATAGTTCCATTTTAGGCCAAATTTTAGGCTTTTGGACCAATTTAA AGCCAAATTTTGAGCTTTTCGGATATCTAGTCCCGTTTTAAGCCAAATTTCAAAGCTTTTGGGTC ATTTTAAGCTAGTTTTCAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAATTTCAAAGCTTTT GGGCCATTTTTAGGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTCAG GCTTTTGGGGGATATTAGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGTTTTATGCCGAATT TTGAAGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGA Right flanking sequence: Indices 1069963 -- 1070462 ACAATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTTCAGCTTTTCGGGTAACT AGTACCGTTTTAAGCCAAATTTTAAAGCTTTTGGGCCATTTTTAGGTCAATTTTCAGACTTTTAG GGTATCTAGAACCGTTTTAAGCCAAATTTTCAGCTTTTCAGGTAACTAGTACCGCTTTAAGCCAA ATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAAGCCAAATTTTAAAGCTTTTCGGGTGACTAG TACCATTTTAAGCCAAATTTTAAGCTTTTTGGGTCAATTATCGCCAAATTTTTCAAATTTTTAGG GTATCTGGTTGTCAAAAATTCGAAAAAAACCACAAAAAACCGTGCCGGCAGGGACGAAAAAATCG CGCGCAAAAAAAACGGCAAAAAGAGGAAAAAAACTCAAAACCGCGCGCGCATTTTTACCTGATCC TCAGTCAAATAGTTGGGCAGACCACCGATAAAGATCTTATTGGCC Found at i:1070030 original size:40 final size:40 Alignment explanation
Indices: 1069965--1070059 Score: 146 Period size: 40 Copynumber: 2.4 Consensus size: 40 1069955 CTTTCGGGAC * * * 1069965 AATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCA 1 AATTTTAAGCTTTTCAGGTAACTAGTACCGTTTTAAGCCA * * 1070005 AATTTTCAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCA 1 AATTTTAAGCTTTTCAGGTAACTAGTACCGTTTTAAGCCA 1070045 AATTTTAAAGCTTTT 1 AATTTT-AAGCTTTT 1070060 GGGCCATTTT Statistics Matches: 48, Mismatches: 6, Indels: 1 0.87 0.11 0.02 Matches are distributed among these distances: 40 41 0.85 41 7 0.15 ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42 Consensus pattern (40 bp): AATTTTAAGCTTTTCAGGTAACTAGTACCGTTTTAAGCCA Left flanking sequence: Indices 1069465 -- 1069964 TTAGGCCAAATTTTAGGCTTTTGGACCAATTTAAAGCCAAATTTTGAGCTTTTCGGATATCTAGT CCCGTTTTAAGCCAAATTTCAAAGCTTTTGGGTCATTTTAAGCTAGTTTTCAGACTTTTGGAGTG TTCCGGCCATCGTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGACTTTT AGGGTATCTAGAACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAAAGTTCCAGA TTTTCGGGTATCTAGAACCGTTTTATGCCGAATTTTGAAGCTTTTGGGGGATATTAGCCAATTTT TCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAG CTTTTGGGCCATTTTTAGGCCAATTTTCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATT TCAGGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGAC Right flanking sequence: Indices 1070060 -- 1070559 GGGCCATTTTTAGGTCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTCA GCTTTTCAGGTAACTAGTACCGCTTTAAGCCAAATTTTAAGCTTTTCAGGTATCTAGTCCCGTTT TAAGCCAAATTTTAAAGCTTTTCGGGTGACTAGTACCATTTTAAGCCAAATTTTAAGCTTTTTGG GTCAATTATCGCCAAATTTTTCAAATTTTTAGGGTATCTGGTTGTCAAAAATTCGAAAAAAACCA CAAAAAACCGTGCCGGCAGGGACGAAAAAATCGCGCGCAAAAAAAACGGCAAAAAGAGGAAAAAA ACTCAAAACCGCGCGCGCATTTTTACCTGATCCTCAGTCAAATAGTTGGGCAGACCACCGATAAA GATCTTATTGGCCGAATCGACGACAATCGTTGAAACAGGCATACGAGAGTTCATATCAAACGTAT TTTGAGATGGTTGATAGTCTCTTGGACGTCGAACTTTCAACTGTT Found at i:1070081 original size:11 final size:11 Alignment explanation
Indices: 1070056--1070081 Score: 31 Period size: 11 Copynumber: 2.4 Consensus size: 11 1070046 ATTTTAAAGC * * 1070056 TTTTGGGCCAT 1 TTTTAGGCCAA * 1070067 TTTTAGGTCAA 1 TTTTAGGCCAA 1070078 TTTT 1 TTTT 1070082 CAGACTTTTA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.15, C:0.12, G:0.19, T:0.54 Consensus pattern (11 bp): TTTTAGGCCAA Left flanking sequence: Indices 1069556 -- 1070055 TTTGGGTCATTTTAAGCTAGTTTTCAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAATTTCA AAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCA AATTTCAGGCTTTTGGGGGATATTAGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGTTTTAT GCCGAATTTTGAAGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCT TTTCAGGTATCTAGTACCGTTTTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTT TCAGCTTTTCGGGTATCTAGTACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAA TTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTT CAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCAAATTTTAAAGC Right flanking sequence: Indices 1070082 -- 1070581 CAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTCAGCTTTTCAGGTAACTAGTACCG CTTTAAGCCAAATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAAGCCAAATTTTAAAGCTTTT CGGGTGACTAGTACCATTTTAAGCCAAATTTTAAGCTTTTTGGGTCAATTATCGCCAAATTTTTC AAATTTTTAGGGTATCTGGTTGTCAAAAATTCGAAAAAAACCACAAAAAACCGTGCCGGCAGGGA CGAAAAAATCGCGCGCAAAAAAAACGGCAAAAAGAGGAAAAAAACTCAAAACCGCGCGCGCATTT TTACCTGATCCTCAGTCAAATAGTTGGGCAGACCACCGATAAAGATCTTATTGGCCGAATCGACG ACAATCGTTGAAACAGGCATACGAGAGTTCATATCAAACGTATTTTGAGATGGTTGATAGTCTCT TGGACGTCGAACTTTCAACTGTTGTCCCATGAAATTGATTCCGTC Found at i:1070223 original size:41 final size:40 Alignment explanation
Indices: 1070076--1070256 Score: 253 Period size: 40 Copynumber: 4.5 Consensus size: 40 1070066 TTTTTAGGTC * * * * 1070076 AATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCA 1 AATTTTAAG-CTTTTCGGGTAACTAGTACCGTTTTAAGCCA * * * 1070117 AATTTTCAGCTTTTCAGGTAACTAGTACCGCTTTAAGCCA 1 AATTTTAAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCA * * * 1070157 AATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAAGCCA 1 AATTTTAAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCA * * 1070197 AATTTTAAAGCTTTTCGGGTGACTAGTACCATTTTAAGCCA 1 AATTTT-AAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCA * 1070238 AATTTTAAGCTTTTTGGGT 1 AATTTTAAGCTTTTCGGGT 1070257 CAATTATCGC Statistics Matches: 124, Mismatches: 15, Indels: 3 0.87 0.11 0.02 Matches are distributed among these distances: 40 80 0.65 41 44 0.35 ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39 Consensus pattern (40 bp): AATTTTAAGCTTTTCGGGTAACTAGTACCGTTTTAAGCCA Left flanking sequence: Indices 1069576 -- 1070075 TTTTCAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTA GGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGA TATTAGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGTTTTATGCCGAATTTTGAAGCTTTTG GGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTACCGT TTTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGCTTTTCGGGTATCTAG TACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACA ATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTTCAGCTTTTCGGGTAACTAGT ACCGTTTTAAGCCAAATTTTAAAGCTTTTGGGCCATTTTTAGGTC Right flanking sequence: Indices 1070257 -- 1070756 CAATTATCGCCAAATTTTTCAAATTTTTAGGGTATCTGGTTGTCAAAAATTCGAAAAAAACCACA AAAAACCGTGCCGGCAGGGACGAAAAAATCGCGCGCAAAAAAAACGGCAAAAAGAGGAAAAAAAC TCAAAACCGCGCGCGCATTTTTACCTGATCCTCAGTCAAATAGTTGGGCAGACCACCGATAAAGA TCTTATTGGCCGAATCGACGACAATCGTTGAAACAGGCATACGAGAGTTCATATCAAACGTATTT TGAGATGGTTGATAGTCTCTTGGACGTCGAACTTTCAACTGTTGTCCCATGAAATTGATTCCGTC AAATGCCATTCCGGCCGTCGTTTCGTCTATTGAACGGAATTCTATGAATGCGAAATTTTTGTCTG AAAGAAAAATTCGAGGTTATTGGGGTACTGTAGGGGCTTAAAACGAGTGATTTTTGCACATTTTA GACTAAAAAATCAAATTTTCCGTCAAAAAATGGCAAAAATCGCCG Found at i:1070234 original size:81 final size:80 Alignment explanation
Indices: 1070076--1070251 Score: 264 Period size: 81 Copynumber: 2.2 Consensus size: 80 1070066 TTTTTAGGTC * * * 1070076 AATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTTCAGCTTTTCAGGTAACTA 1 AATTTTAAG-CTTTTAAGGTATCTAGAACCGTTTTAAGCCAAATTTTAAGCTTTTCAGGTAACTA * 1070141 GTACCGCTTTAAGCCA 65 GTACCACTTTAAGCCA * ** * * 1070157 AATTTTAAGCTTTTCAGGTATCTAGTCCCGTTTTAAGCCAAATTTTAAAGCTTTTCGGGTGACTA 1 AATTTTAAGCTTTTAAGGTATCTAGAACCGTTTTAAGCCAAATTTT-AAGCTTTTCAGGTAACTA * 1070222 GTACCATTTTAAGCCA 65 GTACCACTTTAAGCCA 1070238 AATTTTAAGCTTTT 1 AATTTTAAGCTTTT 1070252 TGGGTCAATT Statistics Matches: 84, Mismatches: 10, Indels: 2 0.88 0.10 0.02 Matches are distributed among these distances: 80 33 0.39 81 51 0.61 ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39 Consensus pattern (80 bp): AATTTTAAGCTTTTAAGGTATCTAGAACCGTTTTAAGCCAAATTTTAAGCTTTTCAGGTAACTAG TACCACTTTAAGCCA Left flanking sequence: Indices 1069576 -- 1070075 TTTTCAGACTTTTGGAGTGTTCCGGCCATCGTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTA GGCCAATTTTCAGACTTTTAGGGTATCTAGAACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGA TATTAGCCAAAGTTCCAGATTTTCGGGTATCTAGAACCGTTTTATGCCGAATTTTGAAGCTTTTG GGGGATATTAGCCAATTTTTCAGGCTTTCGGGACAATTTTAAGCTTTTCAGGTATCTAGTACCGT TTTAAGCCAAATTTCAAAGCTTTTGGGCCATTTTTAGGCCAATTTTCAGCTTTTCGGGTATCTAG TACCGTTTTAAGCCAAATTTCAGGCTTTTGGGGGATATTAGCCAATTTTTCAGGCTTTCGGGACA ATTTTAAGCTTTTCAGGTATCTAGTCCTGTTTTAAGCCAAATTTTCAGCTTTTCGGGTAACTAGT ACCGTTTTAAGCCAAATTTTAAAGCTTTTGGGCCATTTTTAGGTC Right flanking sequence: Indices 1070252 -- 1070751 TGGGTCAATTATCGCCAAATTTTTCAAATTTTTAGGGTATCTGGTTGTCAAAAATTCGAAAAAAA CCACAAAAAACCGTGCCGGCAGGGACGAAAAAATCGCGCGCAAAAAAAACGGCAAAAAGAGGAAA AAAACTCAAAACCGCGCGCGCATTTTTACCTGATCCTCAGTCAAATAGTTGGGCAGACCACCGAT AAAGATCTTATTGGCCGAATCGACGACAATCGTTGAAACAGGCATACGAGAGTTCATATCAAACG TATTTTGAGATGGTTGATAGTCTCTTGGACGTCGAACTTTCAACTGTTGTCCCATGAAATTGATT CCGTCAAATGCCATTCCGGCCGTCGTTTCGTCTATTGAACGGAATTCTATGAATGCGAAATTTTT GTCTGAAAGAAAAATTCGAGGTTATTGGGGTACTGTAGGGGCTTAAAACGAGTGATTTTTGCACA TTTTAGACTAAAAAATCAAATTTTCCGTCAAAAAATGGCAAAAAT Found at i:1073373 original size:40 final size:40 Alignment explanation
Indices: 1073329--1073427 Score: 133 Period size: 41 Copynumber: 2.5 Consensus size: 40 1073319 TGAAAAACGG * * * * 1073329 CAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATC 1 CAATTTTTACGAATTTTCCAGAGTTTTCAGTAAAAAAATC * * * 1073369 CAATTTTTATTGAATTTTTCAGAGTTTTCAGTGAAAAAATC 1 CAATTTTTA-CGAATTTTCCAGAGTTTTCAGTAAAAAAATC * 1073410 CAATTTTTCCGAATTTTC 1 CAATTTTTACGAATTTTC 1073428 AGTAAAAAAT Statistics Matches: 48, Mismatches: 10, Indels: 2 0.80 0.17 0.03 Matches are distributed among these distances: 40 15 0.31 41 33 0.69 ACGTcount: A:0.31, C:0.15, G:0.10, T:0.43 Consensus pattern (40 bp): CAATTTTTACGAATTTTCCAGAGTTTTCAGTAAAAAAATC Left flanking sequence: Indices 1072829 -- 1073328 TCGTAACTTTGTCAGATTTTTGCACACTATTTTCCGATTTTTAAATCAAAATTCAACCAAAAACT GGAATAATTTTATTTTTTGACTTTTTTAACGGTAATTTTGAGCTTTTGAAGCAAAAAATCTGGCA AAATTGCACTTTTTACAGAATTTTATTTGGAAAAATCGAAAATTTGGGCAGAGGTTCCCCGGGAA AGTGGTCAAATGTGCTCCTGTGAGCAATTTCGGGTGGAAAATTCCAAAATTTTGTAATTTCTAAT GCAAAAGTTTGGAATTTTCACACCAAAATCACCGATAGAGCACATTTGCCACGGAAAATTGAATT TTAATCTGAGAGTTTAGCACATTTTTGCGAGAAAAACTGAAAAAAAAATTTTGCAGTTTTCTGAG TAAAATTGGTTAATTTTTTCAGGATTTTCCTGAATTTTGGGCTCCGAGAGCATTTTTGGATACTA ATTCCACATTTTTCAATTTTTCTCGAATTTTCACGTGAAAAACGG Right flanking sequence: Indices 1073428 -- 1073927 AGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGA AAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTT TCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCGAATTTTCAGTAAAAAATCCAATTTTTCCGAT TTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGAAAAACGGCAATTTTCACGAATTTT CCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTCGATGAAAAATTCGAATTTTTCCG AATTTTCGATGAAAAATTCGAATTTTTCCGAATTTTCAGTGAAAAAATCGAATTTTCTCGAATTT TCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCG AATTTTTCCGAATTTTCAGGCAAAAACTGCCAATTTTCTCGAATT Found at i:1073435 original size:29 final size:30 Alignment explanation
Indices: 1073381--1073517 Score: 181 Period size: 30 Copynumber: 4.6 Consensus size: 30 1073371 ATTTTTATTG * * 1073381 AATTTTTCAGAGTTTTCAGTGAAAAAATCC 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC 1073411 AATTTTTCCGAATTTTCAGT-AAAAAATCC 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC * * * 1073440 AATTTTTCCGATTTTTCAGTGAAAAATTCA 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC * *** 1073470 AATTTTCCCGAATTTTCACGTGAAAAACGGC 1 AATTTTTCCGAATTTTCA-GTGAAAAAATCC ** 1073501 AATTTTCACGAATTTTC 1 AATTTTTCCGAATTTTC 1073518 CCGAGTTTTT Statistics Matches: 93, Mismatches: 12, Indels: 3 0.86 0.11 0.03 Matches are distributed among these distances: 29 28 0.30 30 41 0.44 31 24 0.26 ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38 Consensus pattern (30 bp): AATTTTTCCGAATTTTCAGTGAAAAAATCC Left flanking sequence: Indices 1072881 -- 1073380 TCAACCAAAAACTGGAATAATTTTATTTTTTGACTTTTTTAACGGTAATTTTGAGCTTTTGAAGC AAAAAATCTGGCAAAATTGCACTTTTTACAGAATTTTATTTGGAAAAATCGAAAATTTGGGCAGA GGTTCCCCGGGAAAGTGGTCAAATGTGCTCCTGTGAGCAATTTCGGGTGGAAAATTCCAAAATTT TGTAATTTCTAATGCAAAAGTTTGGAATTTTCACACCAAAATCACCGATAGAGCACATTTGCCAC GGAAAATTGAATTTTAATCTGAGAGTTTAGCACATTTTTGCGAGAAAAACTGAAAAAAAAATTTT GCAGTTTTCTGAGTAAAATTGGTTAATTTTTTCAGGATTTTCCTGAATTTTGGGCTCCGAGAGCA TTTTTGGATACTAATTCCACATTTTTCAATTTTTCTCGAATTTTCACGTGAAAAACGGCAATTTT CACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTG Right flanking sequence: Indices 1073518 -- 1074017 CCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTTCAGAGTTTTCAGTGAAAAAATCCA ATTTTTCCGAATTTTCAGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTC CCGAATTTTCACGTGAAAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCA ATTTTTATTGAATTTTCGATGAAAAATTCGAATTTTTCCGAATTTTCGATGAAAAATTCGAATTT TTCCGAATTTTCAGTGAAAAAATCGAATTTTCTCGAATTTTCAGTGAAAACTGCCAATTTTCTCG AATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGGCAAAA ACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCC GAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATT Found at i:1073516 original size:41 final size:40 Alignment explanation
Indices: 1073470--1073598 Score: 156 Period size: 41 Copynumber: 3.2 Consensus size: 40 1073460 GAAAAATTCA * *** * 1073470 AATTTTCCCGAATTTTCACGTGAAAAACGGCAATTTTCACG 1 AATTTTCCCGAGTTTTCA-GTGAAAAAATCCAATTTTTACG * * * * 1073511 AATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTG 1 AATTTTCCCGAGTTTTCAGTGAAAAAATCCAATTTTTA-CG * * * 1073552 AATTTTTCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCG 1 AATTTTCCCGAGTTTTCAGTGAAAAAATCCAATTTTTACG 1073592 AATTTTC 1 AATTTTC 1073599 AGTAAAAAAT Statistics Matches: 70, Mismatches: 17, Indels: 3 0.78 0.19 0.03 Matches are distributed among these distances: 40 21 0.30 41 49 0.70 ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40 Consensus pattern (40 bp): AATTTTCCCGAGTTTTCAGTGAAAAAATCCAATTTTTACG Left flanking sequence: Indices 1072970 -- 1073469 TTTACAGAATTTTATTTGGAAAAATCGAAAATTTGGGCAGAGGTTCCCCGGGAAAGTGGTCAAAT GTGCTCCTGTGAGCAATTTCGGGTGGAAAATTCCAAAATTTTGTAATTTCTAATGCAAAAGTTTG GAATTTTCACACCAAAATCACCGATAGAGCACATTTGCCACGGAAAATTGAATTTTAATCTGAGA GTTTAGCACATTTTTGCGAGAAAAACTGAAAAAAAAATTTTGCAGTTTTCTGAGTAAAATTGGTT AATTTTTTCAGGATTTTCCTGAATTTTGGGCTCCGAGAGCATTTTTGGATACTAATTCCACATTT TTCAATTTTTCTCGAATTTTCACGTGAAAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGT AAAAATATCCAATTTTTATTGAATTTTTCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCGAATT TTCAGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAATTCA Right flanking sequence: Indices 1073599 -- 1074098 AGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGA AAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTT CGATGAAAAATTCGAATTTTTCCGAATTTTCGATGAAAAATTCGAATTTTTCCGAATTTTCAGTG AAAAAATCGAATTTTCTCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTT CAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGGCAAAAACTGCCAATTTTCTCG AATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAA CTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCG AATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTT Found at i:1073606 original size:29 final size:30 Alignment explanation
Indices: 1073552--1073688 Score: 181 Period size: 30 Copynumber: 4.6 Consensus size: 30 1073542 ATTTTTATTG * * 1073552 AATTTTTCAGAGTTTTCAGTGAAAAAATCC 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC 1073582 AATTTTTCCGAATTTTCAGT-AAAAAATCC 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC * * * 1073611 AATTTTTCCGATTTTTCAGTGAAAAATTCA 1 AATTTTTCCGAATTTTCAGTGAAAAAATCC * *** 1073641 AATTTTCCCGAATTTTCACGTGAAAAACGGC 1 AATTTTTCCGAATTTTCA-GTGAAAAAATCC ** 1073672 AATTTTCACGAATTTTC 1 AATTTTTCCGAATTTTC 1073689 CCGAGTTTTT Statistics Matches: 93, Mismatches: 12, Indels: 3 0.86 0.11 0.03 Matches are distributed among these distances: 29 28 0.30 30 41 0.44 31 24 0.26 ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38 Consensus pattern (30 bp): AATTTTTCCGAATTTTCAGTGAAAAAATCC Left flanking sequence: Indices 1073052 -- 1073551 TTCGGGTGGAAAATTCCAAAATTTTGTAATTTCTAATGCAAAAGTTTGGAATTTTCACACCAAAA TCACCGATAGAGCACATTTGCCACGGAAAATTGAATTTTAATCTGAGAGTTTAGCACATTTTTGC GAGAAAAACTGAAAAAAAAATTTTGCAGTTTTCTGAGTAAAATTGGTTAATTTTTTCAGGATTTT CCTGAATTTTGGGCTCCGAGAGCATTTTTGGATACTAATTCCACATTTTTCAATTTTTCTCGAAT TTTCACGTGAAAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTT ATTGAATTTTTCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCGAATTTTCAGTAAAAAATCCAA TTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGAAAAACGGCAATTTT CACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTG Right flanking sequence: Indices 1073689 -- 1074188 CCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTCGATGAAAAATTCGAATTTTTCCGA ATTTTCGATGAAAAATTCGAATTTTTCCGAATTTTCAGTGAAAAAATCGAATTTTCTCGAATTTT CAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGA ATTTTTCCGAATTTTCAGGCAAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAA CTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCG AATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTT TCTCGAATTTTTCCGAATTTTCAGGCAAAAACCGCCAATTTTCTCGAATTTTTCCGAATTGTCAG GCGAAAAATTCCATTTTTCCGTACCAACAACGGGCACTGCAGACT Found at i:1073726 original size:41 final size:41 Alignment explanation
Indices: 1073641--1073729 Score: 99 Period size: 41 Copynumber: 2.2 Consensus size: 41 1073631 GAAAAATTCA * * * 1073641 AATTTTCCCGAATTTTCACGTGAAAAACGGCAATTTTCACG 1 AATTTTCCCGAATTTTCACGTAAAAAAAGCCAATTTTCACG * * * * * * 1073682 AATTTTCCCGAGTTTTTA-GTAAAAATATCCAATTTTTATTG 1 AATTTTCCCGAATTTTCACGTAAAAAAAGCCAATTTTCA-CG 1073723 AATTTTC 1 AATTTTC 1073730 GATGAAAAAT Statistics Matches: 38, Mismatches: 9, Indels: 2 0.78 0.18 0.04 Matches are distributed among these distances: 40 14 0.37 41 24 0.63 ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40 Consensus pattern (41 bp): AATTTTCCCGAATTTTCACGTAAAAAAAGCCAATTTTCACG Left flanking sequence: Indices 1073141 -- 1073640 GGAAAATTGAATTTTAATCTGAGAGTTTAGCACATTTTTGCGAGAAAAACTGAAAAAAAAATTTT GCAGTTTTCTGAGTAAAATTGGTTAATTTTTTCAGGATTTTCCTGAATTTTGGGCTCCGAGAGCA TTTTTGGATACTAATTCCACATTTTTCAATTTTTCTCGAATTTTCACGTGAAAAACGGCAATTTT CACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTTCAGAGTTTTCAGT GAAAAAATCCAATTTTTCCGAATTTTCAGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAA TTCAAATTTTCCCGAATTTTCACGTGAAAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGT AAAAATATCCAATTTTTATTGAATTTTTCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCGAATT TTCAGTAAAAAATCCAATTTTTCCGATTTTTCAGTGAAAAATTCA Right flanking sequence: Indices 1073730 -- 1074229 GATGAAAAATTCGAATTTTTCCGAATTTTCGATGAAAAATTCGAATTTTTCCGAATTTTCAGTGA AAAAATCGAATTTTCTCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTC AGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGGCAAAAACTGCCAATTTTCTCGA ATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAAC TGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGA ATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGGCAAAAACCGCCAATTT TCTCGAATTTTTCCGAATTGTCAGGCGAAAAATTCCATTTTTCCGTACCAACAACGGGCACTGCA GACTGTACAGATCCACGTGGAACCTGTCCAGCCGCCTGCATATTC Found at i:1073736 original size:71 final size:71 Alignment explanation
Indices: 1073611--1073759 Score: 163 Period size: 71 Copynumber: 2.1 Consensus size: 71 1073601 TAAAAAATCC * * * * * * * 1073611 AATTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGAAAAACGGCAATT 1 AATTTTCCCGAGTTTTCAGTAAAAAATCCAAATTTTACCGAATTTTCACATGAAAAACGCCAATT 1073676 TTCACG 66 TTCACG * * ** * ** * 1073682 AATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTC-GATGAAAAATTCGAAT 1 AATTTTCCCGAGTTTTCAGTAAAAA-ATCCAAATTTTACCGAATTTTCACATGAAAAACGCCAAT ** 1073746 TTTTCCG 65 TTTCACG 1073753 AATTTTC 1 AATTTTC 1073760 GATGAAAAAT Statistics Matches: 60, Mismatches: 17, Indels: 2 0.76 0.22 0.03 Matches are distributed among these distances: 71 43 0.72 72 17 0.28 ACGTcount: A:0.32, C:0.15, G:0.11, T:0.41 Consensus pattern (71 bp): AATTTTCCCGAGTTTTCAGTAAAAAATCCAAATTTTACCGAATTTTCACATGAAAAACGCCAATT TTCACG Left flanking sequence: Indices 1073111 -- 1073610 CCAAAATCACCGATAGAGCACATTTGCCACGGAAAATTGAATTTTAATCTGAGAGTTTAGCACAT TTTTGCGAGAAAAACTGAAAAAAAAATTTTGCAGTTTTCTGAGTAAAATTGGTTAATTTTTTCAG GATTTTCCTGAATTTTGGGCTCCGAGAGCATTTTTGGATACTAATTCCACATTTTTCAATTTTTC TCGAATTTTCACGTGAAAAACGGCAATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCA ATTTTTATTGAATTTTTCAGAGTTTTCAGTGAAAAAATCCAATTTTTCCGAATTTTCAGTAAAAA ATCCAATTTTTCCGATTTTTCAGTGAAAAATTCAAATTTTCCCGAATTTTCACGTGAAAAACGGC AATTTTCACGAATTTTCCCGAGTTTTTAGTAAAAATATCCAATTTTTATTGAATTTTTCAGAGTT TTCAGTGAAAAAATCCAATTTTTCCGAATTTTCAGTAAAAAATCC Right flanking sequence: Indices 1073760 -- 1074259 GATGAAAAATTCGAATTTTTCCGAATTTTCAGTGAAAAAATCGAATTTTCTCGAATTTTCAGTGA AAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTT CCGAATTTTCAGGCAAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCA ATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTT CAGTGAAAACTGCCAATTTTCTCGAATTTTTCCGAATTTTCAGTGAAAACTGCCAATTTTCTCGA ATTTTTCCGAATTTTCAGGCAAAAACCGCCAATTTTCTCGAATTTTTCCGAATTGTCAGGCGAAA AATTCCATTTTTCCGTACCAACAACGGGCACTGCAGACTGTACAGATCCACGTGGAACCTGTCCA GCCGCCTGCATATTCTTGTACTCCATCGGTGTAGTTGTCTCGAAT Found at