TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_X Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17718850 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:871912 original size:21 final size:21 Alignment explanation
Indices: 871887--871941 Score: 68 Period size: 21 Copynumber: 2.7 Consensus size: 21 871877 AAAATAGCAC * 871887 GCACTGACCCAAATAATTTTG 1 GCACTGACCCAAATAAGTTTG * ** * 871908 GCACTGGCATAGATAAGTTTG 1 GCACTGACCCAAATAAGTTTG 871929 GCACTGA-CCAAAT 1 GCACTGACCCAAAT 871942 GAACCTTCGC Statistics Matches: 25, Mismatches: 9, Indels: 1 0.71 0.26 0.03 Matches are distributed among these distances: 20 3 0.12 21 22 0.88 ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25 Consensus pattern (21 bp): GCACTGACCCAAATAAGTTTG Left flanking sequence: Indices 871387 -- 871886 TGACCCAGATAGCTGCTGCTGCTACTGCACTGACCAAACTTAGAATTAACCAAACCTAATGTACA TGGCAAATTAACAAGCAAACATAACTTTTGTTTACTTTTGAAGCGTTTTTAAGTTATACACAATG ACTCAATTAAATTGAACTTGCCTGCTAAACATAAAGGCAAGGTCCTGATATTTGGGAAATAAGTG GCAAAATTAGAAAAAAAATTGAAGTGAACAAAATATAAAAACTGGGATCAATATTTATAGAAAAA AAACAGTTAATGAAAAACAATGAATATTTTAACTCCTGGGGAATGCGGAAATTAAAAAATGGGCG GCAGAAGGATTTTATGAGCTATAAAACATTTTTGGGGATCTCAGTGGTAGGAGAATTTATTATTA TCATGAATATTCAATAGATATTACAGTGTCATTTTATTAGCAGGAGCGGAATTTGTATTTTCTCA TAAACATCACCATATAATTTCTGACTTTGCTAAAAAAAATAGCAC Right flanking sequence: Indices 871942 -- 872441 GAACCTTCGCACTAATCAAATAATGATCGACACTGGTTTATACATGTAATTTTAATTAGGCGGTA TTTACTGACCAATCATGAATTTGCCTAAAAAAAAGTTCGCAATTTAGGGCTTTCACGTAGGTGAC GAAACGCCTGCAGCGCCCGTTTCACAACAACCGCATGCCTCGCGCCGCAGCCGTGCTTCCTGTGT AGTGTGGCGCGGAACCCAAGAAGTGTCGGCCGCGGCGGAAGAACCACCGTTCGCACTAAGTGGAA TGAGCATCAAGCCTTTGACTTCATGTAATTATGCAGAAATGAGGCAAAAGCTTGGCAGGTTGGAG GCCTGAAACCGCGCCTGCCTTCCATGGAACCGCACTTATGACGGAATGTTCGGCAAAAACTGAAA CATGCACGGATCGGAGTGAATAACTGGAACCAACTTTCAGATTACCTTTTTGTTCATAAATGTCT CGTTTTCCAATTTCTTACTTTTCTCAACAATTCCTTCTTACAAGA Found at i:873262 original size:22 final size:22 Alignment explanation
Indices: 873234--873277 Score: 81 Period size: 22 Copynumber: 2.0 Consensus size: 22 873224 TTAAAGTGTG 873234 TTTATTTCACAAAAAAATAGCA 1 TTTATTTCACAAAAAAATAGCA * 873256 TTTATTTCTCAAAAAAATAGCA 1 TTTATTTCACAAAAAAATAGCA 873278 GATATGTGAA Statistics Matches: 21, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34 Consensus pattern (22 bp): TTTATTTCACAAAAAAATAGCA Left flanking sequence: Indices 872734 -- 873233 TCTCTTTTTTGAATTCTAGTCACCATTTGGACCGGTTAACAGCGTCTGATGGGGCAAGCATTCAA GAGACTTACCCAAATTTGCAAGTTCATAATTTCACCCAGAAGCTGGATCATTTTGATCCATACAA CACGAAAACATGGAATCAGGTAATTAATTCAAAGAATAGTTTTTTCAAACTGCCTTAATTTACAG AAATATTTTTACAATCCAGTATTCTCTAGAAACAACTCAATCATTTTCTTAATGATTGGAGGAGA AGGCCCAGAGAATGGAAAATGGGCAGCAAACCCAAATGTTCAGTACCTACAATGGGCTAAAGAGT TCGGAGCCGATGTTTTTGATTTGGAGCACAGATTCTTTGGAGACAGTTGGCCAATTCCGTATGTG CAGCATTTTTTTAACGAGAAGTTTTTAAGTTCAGTCTCTGAATAAAAATGAGTATGTAAGGTTTG GAAAATTGCCTAAAATCTTTCGCGCAACTTGTTAATTAAAGTGTG Right flanking sequence: Indices 873278 -- 873777 GATATGTGAAGTAAGTATCAGGGAAATGGAATATTTTTCTACATTTAAAAAATTAAAGAACAATT GTGCTCTTTTTCAGAGACATGCAAACGAGTTCTCTCCGTTATTTAACCACTCAACAAGCCCTCGC CGATTTGGCATTTTTCATAGAGTTCATGAATCAACAATACGGGTTCAAGAATCCAAGATGGGTCA CATTTGGTGGTAGTTATCCAGGCTCCCTTGCAGCATGGTTCAGGCAAAAATACCCGCAATTAACA GTGGGTTCAGTTGCTAGCAGTGCTCCTGTCAATTTGAAACTTGATTTCTATGGTAATCTACATAG ATTTTTAGTACTTGTAAATTATATATAGTGTTCCAGAGTACGCAATGGTTGTTGAAGACGATTTG AGAATAACCGATCCAAAATGTGCTCAGGCTACTAAAGATGCATTTGTTCAAATGCAAAAACTGGC GTTGACAGCTGAAGGAAGAAACTCATTGAATAATCATTTTAAGTA Found at i:873816 original size:12 final size:12 Alignment explanation
Indices: 873789--873818 Score: 39 Period size: 12 Copynumber: 2.5 Consensus size: 12 873779 GTTAATTAAA 873789 AAAAAAGCTTTC 1 AAAAAAGCTTTC * * * 873801 AAAACAGTTTTT 1 AAAAAAGCTTTC 873813 AAAAAA 1 AAAAAA 873819 CTGGTGCTCA Statistics Matches: 14, Mismatches: 4, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27 Consensus pattern (12 bp): AAAAAAGCTTTC Left flanking sequence: Indices 873289 -- 873788 TAAGTATCAGGGAAATGGAATATTTTTCTACATTTAAAAAATTAAAGAACAATTGTGCTCTTTTT CAGAGACATGCAAACGAGTTCTCTCCGTTATTTAACCACTCAACAAGCCCTCGCCGATTTGGCAT TTTTCATAGAGTTCATGAATCAACAATACGGGTTCAAGAATCCAAGATGGGTCACATTTGGTGGT AGTTATCCAGGCTCCCTTGCAGCATGGTTCAGGCAAAAATACCCGCAATTAACAGTGGGTTCAGT TGCTAGCAGTGCTCCTGTCAATTTGAAACTTGATTTCTATGGTAATCTACATAGATTTTTAGTAC TTGTAAATTATATATAGTGTTCCAGAGTACGCAATGGTTGTTGAAGACGATTTGAGAATAACCGA TCCAAAATGTGCTCAGGCTACTAAAGATGCATTTGTTCAAATGCAAAAACTGGCGTTGACAGCTG AAGGAAGAAACTCATTGAATAATCATTTTAAGTATGTTAATTAAA Right flanking sequence: Indices 873819 -- 874318 CTGGTGCTCAACTAATAGCTCAATTTTTGAAATGGGATCTTTAGGTTTTCTATGTGATTGTGGAA GCTCTGGAGATACAAAATTAGTCAAGTTTGACTTTTCTTTAAAAAATAACAAAATTAAAAAAAAA TGCATCCAATTTTCAGTCTTCAACCTCCATTCGATGCAAACACAACAAAACTCGATATCAATAAC TTCTTTGGCAATATTTTCAACACTTATCAAGGAATGACTCAGTACACTTATGATGGACAGGTAAG ACAATTTTCGTTTTGATCTACCTTACCAAACCATACCTAACTGATTTAACAATACATTCCAGCTT ATTGAATAGATCAATAGTATAATTTATCAACAGCTTACAACCATAATTAACCCAACTCTAACTAT ACACTTTCAGAGCAACAGCACACATTCTGATAAGACCGTCCGCAAAATGTGCGACATTATGACTA ATGCCACTGAAACAGATGTGGTGATGAGAGTGGAAAACTTGTTCC Found at i:874998 original size:17 final size:17 Alignment explanation
Indices: 874952--875002 Score: 81 Period size: 17 Copynumber: 3.0 Consensus size: 17 874942 TACCATATTT ** 874952 CCTCTATTAGTTAGGCA 1 CCTCTATTAGTTTTGCA 874969 CCTCTATTAGTTTTGCA 1 CCTCTATTAGTTTTGCA * 874986 CCTCCATTAGTTTTGCA 1 CCTCTATTAGTTTTGCA 875003 TCTAAAATCA Statistics Matches: 31, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 17 31 1.00 ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41 Consensus pattern (17 bp): CCTCTATTAGTTTTGCA Left flanking sequence: Indices 874452 -- 874951 TAGTATATAAATCAAAAAGGGGGAGCTTAGCATAACGTTGAAACTTCTAGATTATTTCAAAATAA AGTCAAAAATTTAAGCTGCCGCTCGTGGATGGATGTGGTTGTGTTGTAACGAGATTGGATTCCTC CAGACTACAAATCAGGGAAATAATGTATTCGGAACAGGAGTTCCATTGAAGTAAATTTATTCCTA AAATACTTATGAACATAAAATAATTTTCCAGCTTATTCATCGACATGTGCACAGACATGTTTGGT GATAGTATGAAAATGAGTCAAATCATGGGAGGCAACAAGAAATCGCAAAACTACTATGGAGGCGC TGACTTTTATAATGTAAGTACAAAAAATCAATGGAAAAATACCCACCCATAAGCTTTGTCTCCGA CGCAGGTAATGAAATTGGCTATCGATTGAGGTTTTTGCGAATCTCTAAATTCCAACTGATTTCCA AAGTTGTAAAACCGGCCGAGTTGCATCATTCCAGATACCATATTT Right flanking sequence: Indices 875003 -- 875502 TCTAAAATCACTAACCGAAAATTAGTTTTGCACCTCTAATAGTTTTGCACCCCTTAATTTTTCCC TATTTTTAGGAATTCAAAAGTTGCATTAGAAAGTCGTTCTAAAGTCTAATTAGGAAAACTCTTAC AGACTTGGTATAACAAGTCAAAATTGACAAAATATGAGTACAACTCGGACAATTTTTGCGTATCA GTCGTAAAACTCGTCTATTTTGGTTAATAAGTTGTCATTGAAATTGATGATATTATGTCATAATT TAATGGAAAACATGAGAAAAAACCTGTTTGAAAATTAGTTTTGCACCTCCATTAGTTTTGCATCA AAATTAGGTGTCCGAAAATTAGTTTTGCATGCCTTACTAATAGAGGATATACGATAAACAGATCT AGTTTAAAATAAATTGGAATTTTCGAAATTACACGCAGGTAAAAATCGATTTTTCAGGCTACGAA TGTCGTTCTTCCAAATGGCTCTCTCGACCCATGGCACGCTTTGGG Found at i:878825 original size:13 final size:13 Alignment explanation
Indices: 878803--878828 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 878793 TAAGGTTTGC * 878803 CATAACAAATCAG 1 CATAAAAAATCAG 878816 CATAAAAAATCAG 1 CATAAAAAATCAG 878829 TTTTCCCTAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.58, C:0.19, G:0.08, T:0.15 Consensus pattern (13 bp): CATAAAAAATCAG Left flanking sequence: Indices 878303 -- 878802 ACTACATAAGTATGCTCTTGAAATTAATAAGTATTATACAATGACTAAATTATATGTTAAAATAA AAATGAATGCATGTTTCAACATTAAACAGAAAGATTTTTTCAGTACTTCATGAGCGGCGAGTACA AAGAACTTTCAATGTCATCAACGCTATACGGAGTTGTGATGACGGACACCTTTTTCAAGCTGATT ACTATTCTGCCAAAGTCATTAGTAAGATTTTTTATGTGAATTCTCAACCTTAATATCATTTTCAG ATTGTAATAGTTCCGGACACTTATGTAACAACATCATTCAAGAGAAAGGTCCTACAATTGCTGGA ATACTGCTCTCAGGTATTTGAAGATAGCGGGATTTAAATATATATAAAGTAATTTTAGCTATACC GATGTGCTCTTCCCTTTGGACCATGGCTCCGGCACTTCTTGTTTTCGAATCCTGGTTCCGGAGTT ATGATCTACTTTTTCTCCATCTCTTACTTCTCTCTTAAGGTTTGC Right flanking sequence: Indices 878829 -- 879328 TTTTCCCTAATAACATTTGTTCCAGGTCGGAGAAGTCTATCGATACTCACTTTCAGTGAAGAAAT CAGTCGGAAACTTGTTAACGGTATTTGTTTCTTACGTGCTGTCCAAACTTATACTTTATTCTTTC AGGACAGCTCAGTAGGAACAAAATCCGTGGATCACGAGGAACAGCCATGCGCGGTGTGCCATGGA GATTTGTTACAGCCAATCAAGCTAGAATGCACACACGTATTCTGCAAGTTTTGTATCGAGACCTG GCTGGATCAGAAGTCAACATGCCCAATTTGCAGAGCTGAAGTAACTAAAGATGCTGTAAGTTTTT TTTTTTTAAATAAATGTTTTTGAAAAAAAAACAGTTGATTAGTAAAAACGGGGTTTTTAAAAGAG CCACGTGAGTCTGATAAAAATGCTTGAAATGTAGAATTGTAAATATTGTCGTTCATACTTTCACA GCGGATTTTCGCAAAATTAGAATCTGTTAATTCAGCCAACATATC Found at i:882044 original size:21 final size:21 Alignment explanation
Indices: 882020--882158 Score: 131 Period size: 21 Copynumber: 6.6 Consensus size: 21 882010 GTCACAGTCG * 882020 CTGAACAAAATTTCAGAAGCA 1 CTGACCAAAATTTCAGAAGCA * * 882041 CTGACCAAAATTTTAGAATCA 1 CTGACCAAAATTTCAGAAGCA * 882062 CTGACCAACATTTCAGAAGCA 1 CTGACCAAAATTTCAGAAGCA * ** * ** 882083 CTGACCAAAAATATAGTAAAA 1 CTGACCAAAATTTCAGAAGCA * * *** * * 882104 CAGTCCAAAATTTTTAACGTA 1 CTGACCAAAATTTCAGAAGCA * * ** 882125 CTGACAAAAAATATAGAAGCA 1 CTGACCAAAATTTCAGAAGCA 882146 CTGACCAAAATTT 1 CTGACCAAAATTT 882159 TCATAAACAA Statistics Matches: 83, Mismatches: 35, Indels: 0 0.70 0.30 0.00 Matches are distributed among these distances: 21 83 1.00 ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23 Consensus pattern (21 bp): CTGACCAAAATTTCAGAAGCA Left flanking sequence: Indices 881520 -- 882019 TTCGGATATCCACAATCGTTTATCTGGTCATAATTTGCTTTTGGTTTGGTAGTGGAGTTTTCTTC ATATTCACAATTCGGTGTGAAGTGCTAGATACTGCAATTTTCAATACAACCATATTGATTTTGGT TGTCTTGTTTCAAATTGCACACGCGGGACTTGTCACTTCGTTAATATTTTTCCAGGTAATAACAG CTATATGAAAACTATATAGATAACATTTTCAGAGAGAAATGAGTTGGAGAACGCTGTCAATAACA ATAGGTACTATTGTTATTCTGTTCTGTTGCGCGTTCTTAGGATTTGTCTGCATAACACTCAACTG TGGATGGGTGAAATACATTGACTATATGCACGGAAAGAAGAAGGTATGTTATAGGGGTTTTTCAC CCAAGAAGAAACTCTTGTTTCTGCACTTTCATCTTATGCTATTAGCGCGGACTAGAATTTTGAAA TCAATGACTGTGCTTTCTAAAGTTGTACTCAAAATGTCACAGTCG Right flanking sequence: Indices 882159 -- 882658 TCATAAACAAACAACACAGTTTTACTAGCAATTTCCCATATTTCAACACTGCTACCTTATTTTTA GATCCTCCTCTGGTCTAAAAGATGTTTTTTCCAAAAAAGCTTCGTATTCCGTTTTTGGCCTACTG ATCCCATTGTACCCAACCAAAAACTATTATTTCTGCACTTTCATCTCTCCGACCTTTTTGGTCGC TGCATGTTGATAGTACAAGGCCAAAATGTATCCCGATCAGATATCAAATTTCCAATACGTCCGCA AACTTCATACTAGAGAAAAAAAGTTCACATGCAAAACATCCAATACCTTACTGTTTACAGTGCTC TATTTGCTCATTGTTCTCCCTTTGTTGCGGTAAAAAAGAGCCATTGGAAGCGGCAACTAGCAATG GAACTGCACCGACAAATACCAGGCCGTATGAGGATGATGTGCCGCTGGATCGATTCGATGCGTTC TAATTGTTTTTCTTGCTGTACACTAAAACTTGGGTAGAAAATCAT Found at i:882075 original size:42 final size:42 Alignment explanation
Indices: 882020--882158 Score: 166 Period size: 42 Copynumber: 3.3 Consensus size: 42 882010 GTCACAGTCG * * * * 882020 CTGAACAAAATTTCAGAAGCACTGACCAAAATTTTAGAATCA 1 CTGACCAAAATTTCAGAAGCACTGACCAAAAATATAGAAACA * * * 882062 CTGACCAACATTTCAGAAGCACTGACCAAAAATATAGTAAAA 1 CTGACCAAAATTTCAGAAGCACTGACCAAAAATATAGAAACA * * *** * * * * 882104 CAGTCCAAAATTTTTAACGTACTGACAAAAAATATAGAAGCA 1 CTGACCAAAATTTCAGAAGCACTGACCAAAAATATAGAAACA 882146 CTGACCAAAATTT 1 CTGACCAAAATTT 882159 TCATAAACAA Statistics Matches: 76, Mismatches: 21, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 42 76 1.00 ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23 Consensus pattern (42 bp): CTGACCAAAATTTCAGAAGCACTGACCAAAAATATAGAAACA Left flanking sequence: Indices 881520 -- 882019 TTCGGATATCCACAATCGTTTATCTGGTCATAATTTGCTTTTGGTTTGGTAGTGGAGTTTTCTTC ATATTCACAATTCGGTGTGAAGTGCTAGATACTGCAATTTTCAATACAACCATATTGATTTTGGT TGTCTTGTTTCAAATTGCACACGCGGGACTTGTCACTTCGTTAATATTTTTCCAGGTAATAACAG CTATATGAAAACTATATAGATAACATTTTCAGAGAGAAATGAGTTGGAGAACGCTGTCAATAACA ATAGGTACTATTGTTATTCTGTTCTGTTGCGCGTTCTTAGGATTTGTCTGCATAACACTCAACTG TGGATGGGTGAAATACATTGACTATATGCACGGAAAGAAGAAGGTATGTTATAGGGGTTTTTCAC CCAAGAAGAAACTCTTGTTTCTGCACTTTCATCTTATGCTATTAGCGCGGACTAGAATTTTGAAA TCAATGACTGTGCTTTCTAAAGTTGTACTCAAAATGTCACAGTCG Right flanking sequence: Indices 882159 -- 882658 TCATAAACAAACAACACAGTTTTACTAGCAATTTCCCATATTTCAACACTGCTACCTTATTTTTA GATCCTCCTCTGGTCTAAAAGATGTTTTTTCCAAAAAAGCTTCGTATTCCGTTTTTGGCCTACTG ATCCCATTGTACCCAACCAAAAACTATTATTTCTGCACTTTCATCTCTCCGACCTTTTTGGTCGC TGCATGTTGATAGTACAAGGCCAAAATGTATCCCGATCAGATATCAAATTTCCAATACGTCCGCA AACTTCATACTAGAGAAAAAAAGTTCACATGCAAAACATCCAATACCTTACTGTTTACAGTGCTC TATTTGCTCATTGTTCTCCCTTTGTTGCGGTAAAAAAGAGCCATTGGAAGCGGCAACTAGCAATG GAACTGCACCGACAAATACCAGGCCGTATGAGGATGATGTGCCGCTGGATCGATTCGATGCGTTC TAATTGTTTTTCTTGCTGTACACTAAAACTTGGGTAGAAAATCAT Found at i:886789 original size:15 final size:15 Alignment explanation
Indices: 886769--886801 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 15 886759 TGGCAGTTGC * 886769 GTTGTCGTTGTTGTA 1 GTTGTCGTAGTTGTA * 886784 GTTGTCGTAGTTGTT 1 GTTGTCGTAGTTGTA 886799 GTT 1 GTT 886802 TCTTCCTCAA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.06, C:0.06, G:0.33, T:0.55 Consensus pattern (15 bp): GTTGTCGTAGTTGTA Left flanking sequence: Indices 886269 -- 886768 CAAATTTAACTTTCTGGGAATTATCACAACAAATGTTAAACTTGTAAAAACACAACTAATATTTC AAACTAGGTAGTGTATACCTTGTTACCGTACCACTTGTCTGTCTCTGTTCATATGTTTTGGCAAA CGGTCATTTCCAGCTTTTTGAAATTGAAATCTAACAATCTTGTTTCAAAGTTTATCAAGTTTGCT CAAAAAAATCACAACTAGAGACATTTTAAAAGTTCATGTACTCAAACAAACGTTTGCCAAAATAA AAGTACCCACCGCTGTCAATAATTGCCCAACGTCCAGCTTCAGGACCCCACCGACATGCAAATTC ATTATTGAAGTCACACAAAAGTTGAGTCGAATCATCGACTATTTCTCCAGATCTCCTATCATTCA GGGGTCGTGTCCTGTTTCCAACAATAAGCAAATCAAAAGGGACTTCCGTTGTTGGTCCCGATGGC ATTGTTGTCGTAATTTCCTCAGTTGTGGTAGTCGTTGGCAGTTGC Right flanking sequence: Indices 886802 -- 887301 TCTTCCTCAATTTCTTTTACGGGCACTACTTCCGTTGGTTTTGGTTTTTTTGTTTGTTTTACTGT CCATGGGCGAATTCGTTTTGGCGGTGAAGTTGTCTGTGGTGTTGCAATTTGAATAGAGAACTGGA CAGCTGTAAGCTTACCATAAAATCCGGACGACCTCTCACAGAATTGGTTTCAGGGGACGTATCAG GATGACAGATTGAGGCGTCATATCGAATGTCATCCAACACAACGACTCCCGGATCAGAACTTGGT TGGATCATTATCTAGAAAAAAGTACTTCATACAAAGTATTTTATTTTTTATCTGCTTAGTCTTAG AAACAATGCCAACCACAAAATCAATGTAGAATAACAATAAAAATAGCCTTCGTTTATCAGGTGTG TACGATAATCGCGAGGTCCAGAATGTTGGGGGTTTTTTTTCAGAATAATCGTTGACATATTTTTG TTCTCATCAATTTGGGATTTTTAAGGAAAACATAGTGATTTTCAT Found at i:887394 original size:11 final size:11 Alignment explanation
Indices: 887374--887396 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 887364 AATGAGAAAA 887374 TTTTTAATTTT 1 TTTTTAATTTT * 887385 TTTTTGATTTT 1 TTTTTAATTTT 887396 T 1 T 887397 CCGAACCCCA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83 Consensus pattern (11 bp): TTTTTAATTTT Left flanking sequence: Indices 886874 -- 887373 CGAATTCGTTTTGGCGGTGAAGTTGTCTGTGGTGTTGCAATTTGAATAGAGAACTGGACAGCTGT AAGCTTACCATAAAATCCGGACGACCTCTCACAGAATTGGTTTCAGGGGACGTATCAGGATGACA GATTGAGGCGTCATATCGAATGTCATCCAACACAACGACTCCCGGATCAGAACTTGGTTGGATCA TTATCTAGAAAAAAGTACTTCATACAAAGTATTTTATTTTTTATCTGCTTAGTCTTAGAAACAAT GCCAACCACAAAATCAATGTAGAATAACAATAAAAATAGCCTTCGTTTATCAGGTGTGTACGATA ATCGCGAGGTCCAGAATGTTGGGGGTTTTTTTTCAGAATAATCGTTGACATATTTTTGTTCTCAT CAATTTGGGATTTTTAAGGAAAACATAGTGATTTTCATAAGTGGTGATATTTTTTAAACATTTCA CAGACCGCCTTCTTTCAATAAAACTAATTTAGCACAATGAGAAAA Right flanking sequence: Indices 887397 -- 887896 CCGAACCCCAATACATAAACTATTTGGGCCTAGAATTTTTTTATGTAGTATCAGTTAAAAATTTT CCGCGGTATAAAAACATCACACAAAAATATGATGACTCTGTTTTTTTCTGTACTAAAAAAATGCG AGTAAATCCAATATACCTACCCTAAACGGCTTTTGAAGTTCTGGTATCTTCAATGAAACTTTGCC TGGCATAATTGACGAGTTTAACACTCCTGTACAATTGAACTTTCCACCTTCCAAATCAGTGAGAC ATATTTCTATATCAGCGTTTCCTATTACCCAATAAGTGAATGATAGTTCGGCGTATCCCATTTGA CATCTTATCGCGTCGGTGACTAATGCATCTACTGGATTGCCACGGGATTCTATTAACGCGTAGGG TTCTCCTGAAAATTCAGTTATAGTTTGGGACAGGAACTAAAATTAATTCAACAATTTGGTTAGGT ATTTTGAATGTTTGGTTATTGCAGTCACAATATAGTTTGTTACCG Found at i:888890 original size:12 final size:11 Alignment explanation
Indices: 888866--888894 Score: 33 Period size: 12 Copynumber: 2.5 Consensus size: 11 888856 TAAGTTTAAA 888866 AATTGTGCAATT 1 AATT-TGCAATT 888878 AATTTGCATATT 1 AATTTGCA-ATT * 888890 ACTTT 1 AATTT 888895 TTGAAAAATA Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 11 4 0.27 12 11 0.73 ACGTcount: A:0.31, C:0.10, G:0.10, T:0.48 Consensus pattern (11 bp): AATTTGCAATT Left flanking sequence: Indices 888366 -- 888865 CGAGCTGACTCATGGCACATAGACCTTCTGAAAAAAAGCGTTGGATGTGACGATGAGAGACTTTT GAACCGTTGACAAGTGCGAACAGGTTAGTGGCAAACTAGAATTTTGTATGTTTTATTATGAGAAT AAGAGGCGGCCTGGAGAATGGGCGGCTGCTGGAGGAGAGAGGGGGGATGACTGTGGCTATGCATA ACCTTTATACCGGTACGCAAACATATACTTTCACAGGTCTTGAACATTACGGCTTTTCTGTTAAT CTTGTGAATAACGTTACGAGAGCATTGTTTATTGTGAAAGATGAACTGTAGTATGTGTCGGGGGA AGAGTCATGAAGTCAACAATCGGCGACAAATTTTCGAACAAAGTTGATATGAGTTGAAGTGGAGA AGAAGAGAGTAGCAAAAGGGGAATCACATTGATATCTTCGTTAGTCAGGTGTTCAAACTTAAAAA TTTACTTACAAAGAGCACTAATAAAAAAATTAAAGTAAGTTTAAA Right flanking sequence: Indices 888895 -- 889394 TTGAAAAATAATACATTGATTTTTGCAAACTTTTCCATTTTTGAGATGTTGGAGCCGGAGTAAAA GCTTACATAAAATGTTTTTAAGCATACATTTTTAAAGTTTTTGGCAATTTTCAGCTGGCACGGAT AACCATGATTTTATAAGTTTAGCAATTATTTTTTAAAGTTCTAGTATGGTGTAAAACTATTAACT GACAAAATATGTCAAACTTCTCTTTATCAATTCTTACTTCCCAAAGATAAAAGGTTTTTGAGTAT GTCAATGTACTATGCTAAAAGTGGAATAGCGTGCAATTTTTATTACACTTATGCCTATAATCAAC TTAGAAAACAAATAAGTATCGGACAAATATGTAAAAAAGACATTCCAATTTTTCAACAAGAAGTA TAGCTTATTTCTGTCAAAAAAATCGAAATCAAAGTTAATCGAAAGCCGAATCGGTCAGTGGAAAA TAAACTATTAACGCGGCCCTTTTTCGCAGGCGGGCGTAAGGCGAC Found at i:889805 original size:11 final size:11 Alignment explanation
Indices: 889779--889805 Score: 33 Period size: 11 Copynumber: 2.5 Consensus size: 11 889769 GGTCAGTGTT ** 889779 TTTTTTTGTTC 1 TTTTTTTGTAA * 889790 ATTTTTTGTAA 1 TTTTTTTGTAA 889801 TTTTT 1 TTTTT 889806 GTTGCACTAT Statistics Matches: 12, Mismatches: 4, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.11, C:0.04, G:0.07, T:0.78 Consensus pattern (11 bp): TTTTTTTGTAA Left flanking sequence: Indices 889279 -- 889778 GAAGTATAGCTTATTTCTGTCAAAAAAATCGAAATCAAAGTTAATCGAAAGCCGAATCGGTCAGT GGAAAATAAACTATTAACGCGGCCCTTTTTCGCAGGCGGGCGTAAGGCGACAAACGAGCCGATTT AAGTGGATCAGTCGAGTGGATATGGTCACACGAAAAAGGCACGAATTTCTACTCGAGAGCCTTTT TATCGTTTGATTGAACTTCTATTGTGATAGATATGATATATCAGCGAGGGTGAAAAAAAAACATT GGAAATAGGTACATGTAATAAAAGGTATAGGTATTGAATTTCGTTTAAAAATTAATCCATTGACC AAAAACGTTTGGAATTGAAAGTTAAGTTTTTAATTGTTTCTGTAAAAATGTTAACAATGAACTTC AAGTATTGTACATTTAGTAAGTGAAAAGTGCAACTGCTTGATTTGTGAAGTTCGGTGAGTTGGAG CATCAGATGAAACAAGTTCTTTAGCCGCAAATTATGGTCAGTGTT Right flanking sequence: Indices 889806 -- 890305 GTTGCACTATCAAAGGAGGCCAATTCAGGTGCAAAAACGGTTTTATGGCGCAAAATGTGGCCAGT GAGCCGCAAATTATGGTCAGTGTGACTTTATAATACTGCAAATTTTTGTCAGTGCTGCCATCAAG TTCTTCACATTCTGGTCAGTGCAAAACTCACATGTATATGGAAACTGCTTAATGTGTGCATTTTG ATCAGTGTGGTTATCAGAGAATTTTTAGAGCAGCAAACATGATCAGTGTAACTTTGTAATAAGGC AAACTTTGGTTAGTGCGGCTCATAAATAGTGCATATTGTGGTCAATATAACTTTTTAATGTGGCA TAAGTTGGTCAGTGCTAGTCTAATTTTTATGATCTGGAAATAAAACTTAATTTGCATTTTGTGAG AAGTGCATTAAAATATTTTCCGAATAAAAACAACCAAAAAAGTCAATCCTTAAAAATCTCGCTTT CACACAAGCAAGCTGTGTCACGAATGGTTGACTTTTCGGCAAATG Found at i:890872 original size:19 final size:19 Alignment explanation
Indices: 890834--890872 Score: 50 Period size: 19 Copynumber: 2.1 Consensus size: 19 890824 AATCGTTTTC * * * 890834 AAATAACTAAAAACCCAAA 1 AAACAACAAAAAACCAAAA * 890853 AAACAACAAAAAACGAAAA 1 AAACAACAAAAAACCAAAA 890872 A 1 A 890873 GTGAAAAATT Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 19 16 1.00 ACGTcount: A:0.74, C:0.18, G:0.03, T:0.05 Consensus pattern (19 bp): AAACAACAAAAAACCAAAA Left flanking sequence: Indices 890334 -- 890833 TATGTAAATACCAATCTAGACCCCAGACACATGATCAAGAATCTCATATAATCTAATAATAAAAT GCTTGTTACAATTGAATAAATAAACAAATAAATAAATGTAAAACTAATAAAAATGTGAAAATCAA ATCCAAAAACGGGGCGGCCGGTGGGGGTCAAACGGTAAATAAAATGGATCTACAAACACTGCTCT CACTACAAAAAATAACATCTCACGAAACGCCACTTGTATCTAAATAAACCGACTCATGACATAAG AACTCTTCTTTTTTCTCTCCGAATGGATTTGTAAAAGAAATTGTTTGAATAGTCTAATGCGGTAC AAGTTTGGGTAATGTAACTCAATTACAAGTTGAGTGTACGGCTTTATATCGACTCTTGAAAATTT CGAAAAAAAAATTCACGCACACTTTTATTTTGGGAATTTTATCCGTAAATGTTACATTTTTTGAA ACTTGTTTCGTAATTAAAATGTTAAAAAATCAGAAAATCGTTTTC Right flanking sequence: Indices 890873 -- 891372 GTGAAAAATTGGCAAAATTAGAAAATCAATAAAAAATTTGCCTCAAAATTAATTGTTCTCTACGA AAAAAAAACAATTGATCAGGTAGGTCATTTGTTTTTCATAGGATGAATGGAAATAAGACAAAAAA ATCTCGATTAGCTTTATCCAAATCAGATCGATATCAATGATTACGAAACAACAAGATCTTGCGAT AAGATTTCTAACAATTGGCAAATTTTCATACACAGGAAATGTGAATAATTTGTAGCCTAGGAGGT GAATTTTTAAAAATCCGTATCTTTTAGTTTTTTTTGAAACGTTTCCAAAAAAGTTTTATAGGGAC TATTGGGTATTTTCGGCTTACTAGGAAATAACCATTCCTAAGCCTAAAGAGATAAAATGCATATC ACGTTTAACTTAAATGGAGAAATTAAAATAAACATTATTAAATTTCAATTTTCGTGTCGATAATA TACAAATACCGGGACTTTCATAAAGAGAGTATATTCACATTATTC Found at i:892505 original size:12 final size:12 Alignment explanation
Indices: 892488--892511 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 892478 ATAATCCGCA 892488 ATTTTCTTGAAC 1 ATTTTCTTGAAC 892500 ATTTTCTTGAAC 1 ATTTTCTTGAAC 892512 TGTGACACCT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50 Consensus pattern (12 bp): ATTTTCTTGAAC Left flanking sequence: Indices 891988 -- 892487 AAAAGATGAGAAACGAGAATTGGAGGTTTCCGAGGACAACAGAACAAGGCGATAACTGGACATTG AATGCTATTGGAGAAGAAAACGCATGAAGAAAAGATGACATGACGATGCAAGATAGCTGTTGATC AGCCTCCCTCCTCGATGGCTTATGGTAAAATGCCGTCATCATCCGACGGCTTTTGCCTCTTCTCT CCCACCAATTTTCTCATATATTCAAGAAAAAACGCGTAACTTTGGCAGCCAATTCAAGTTTTTAT TCTTATTTTGTACATACAAGTCAAAGTCAAACAAATATAGTTGGAGCAAAATGCCTTTGGTTCTA ACAAAAGTTGTTAACTGACAGATAAGAGTTGCAAAAGTAATAGAAAAATACAGTATTTTGAAATT TCACTAGCTGAGCATTCTATTAGAATGAAAGTTGATGGAAAATAAATACAAATGAAAAATGACAA AATGGTAATTATTAAATAATTCTATATTAGAATGCATAATCCGCA Right flanking sequence: Indices 892512 -- 893011 TGTGACACCTGAAATATGAAGGTTTGGGAGTAAGTCTTCCACTAGGACGCAGCTTGCGCCCGCCG CCCTCACACTTTACTCTTGCACGCAGTTACACTCAAAATAAAAACTGCGTGGCGTGTACTGCAGA AAACCTAATATTTAGGCCCCGCCTTTTTACCGTCCACTCACGGGGAAAAGGCGAAATTCGGGGCC CCAACCAATATCAGGCCGCCGACATCTCACGGGTTCCGCGCGCCGCTGCGTTTAACTCGCTGTGG GCGCGGCGAGCTATCTCCGTTGGGGTCCCGAATTTTGCTTTGTCCCCGTGAGTGGACGGTAAAAA GGTGGGGCCTAAATATTAGGTTTTCTGCAGTACACGCCACGCAGTTTTTTTATTTTGAGTGTATA GTGGCGCGCGCTTCCGTGCATCGTCGGCCGCAATACACATAGTTTGATAAGGCGAGCGTGGTGTG GTGAGCCTACCTACGTGTCTAGTAACTATCAAAAGCTATAAATGG Found at i:893129 original size:15 final size:16 Alignment explanation
Indices: 893109--893143 Score: 49 Period size: 16 Copynumber: 2.2 Consensus size: 16 893099 TCTTTTTAAA * 893109 AAATAG-CGATTTCCG 1 AAATAGCCCATTTCCG * 893124 AAATAGCCCATTTTCG 1 AAATAGCCCATTTCCG 893140 AAAT 1 AAAT 893144 TTCTGAAAAC Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 15 6 0.35 16 11 0.65 ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29 Consensus pattern (16 bp): AAATAGCCCATTTCCG Left flanking sequence: Indices 892609 -- 893108 TCAAAATAAAAACTGCGTGGCGTGTACTGCAGAAAACCTAATATTTAGGCCCCGCCTTTTTACCG TCCACTCACGGGGAAAAGGCGAAATTCGGGGCCCCAACCAATATCAGGCCGCCGACATCTCACGG GTTCCGCGCGCCGCTGCGTTTAACTCGCTGTGGGCGCGGCGAGCTATCTCCGTTGGGGTCCCGAA TTTTGCTTTGTCCCCGTGAGTGGACGGTAAAAAGGTGGGGCCTAAATATTAGGTTTTCTGCAGTA CACGCCACGCAGTTTTTTTATTTTGAGTGTATAGTGGCGCGCGCTTCCGTGCATCGTCGGCCGCA ATACACATAGTTTGATAAGGCGAGCGTGGTGTGGTGAGCCTACCTACGTGTCTAGTAACTATCAA AAGCTATAAATGGGTGGCACCATATGTCACTTCTTTTCAGTTTGTGGCAAATTGCCAATTGCTAT GTTTTCTAAAATCTGACAATTACCGAAATTGCCGGTCTTTTTAAA Right flanking sequence: Indices 893144 -- 893643 TTCTGAAAACCGACAATTTGTAAAATTCCATGATTGCCGACAATTGCGAAACGGCGAGAACCAAA AAACAGAACTGCCGAAAATGTGCATACGTTAGATAATTGTTTGTAAATTTCAACACGGAACCATG CAATATTGTTGAAAAATGGTTACTTTTCAAGATGAACATTTTATCAAGTAAGATAATTTGTCGAA TGGTAAAAAACGAGGTAAAATTTTTTAATTTTCCGAGATTTGTTGGCTTAGGCAAACATCATGTT TAAGCCGAAAAAATTCTTATAGAAATATTTTTATCCATTTCAGTTAAAATGGATTTCAAAAAATT AGAACCAAATTTTCAAATGAAAACGTCTGGTTTGCAATAATCTACAACTAAATTTTCAACTTACT TTATTCTCACTAAACAACTTGGCAACAGTCATTTCCAACAAACTGCCAACTCTTCTTAATCGTCG TGTTGCTCCTAATGGAAGAACTTTGCTATCCATTGTTGGGTGCAC Found at i:894193 original size:14 final size:13 Alignment explanation
Indices: 894158--894195 Score: 46 Period size: 13 Copynumber: 2.8 Consensus size: 13 894148 TAGAAAAAGA * 894158 TTAGTGTTTTTTG 1 TTAGTTTTTTTTG * * 894171 TTTCGTTTTTTTAG 1 -TTAGTTTTTTTTG 894185 TTAGTTTTTTT 1 TTAGTTTTTTT 894196 CCGGCAAATC Statistics Matches: 20, Mismatches: 4, Indels: 1 0.80 0.16 0.04 Matches are distributed among these distances: 13 10 0.50 14 10 0.50 ACGTcount: A:0.08, C:0.03, G:0.16, T:0.74 Consensus pattern (13 bp): TTAGTTTTTTTTG Left flanking sequence: Indices 893658 -- 894157 CATTCAATGTGAGCACGTGATGCTTCAAAGTGCCTAGTTCGATCATGTTGAGTCCTGAAGTTTGA AAGTTAAAATCAATGTCAGTTATTTAATGAAGAAATGGAAAACCGGACTCACAGCAGTTGGGACT TTAAAATAAGTAAATAAAAAACTGAAATCGTAGCAAACGACTTTTTACAAATTCACAGAATTATA TCTTTTAACGAATTTTCACCCTGTTCTGTGGGTTCTTTTACAGTTTTATAACACACACAAAAACC AAATCATATGCTTTCCGAACAAAATGACCCACCTTCATTACTAGTACTGAGGATGGCGACCTCTG GTGGAAAGGAGTTTGGCTTGAGAGTGATAAAACCGTGCACAACACGTGTATCATCTCCAAACCAA GATGTGCTTCTGAAAATTGAGTTGGTGAAACATGATGATTATTAAGTAAGTAATGGATATTTTAT TTGAAAAGTGCGATTACAAACTGAGCTGCTGCTTATAGAAAAAGA Right flanking sequence: Indices 894196 -- 894695 CCGGCAAATCGACAAATTTCCGGAATTGACCTTTCCAGCAAATCAGCAAATCGGCAAATTTCCAG AATTGAAAATTTCTAGCAAATCGGCAAATTGGCAAATCGGCAATCCGGTAAATTGCCGATTTTCC AAATTTGTCGACAAAATATTTTGCCGAACAACATATGCCGCCCATCCCTGTCTTAAACCTTACCC TAAAAATAATTTGCCATGCACTTTTTTCTATCGAAAATGAATTTTAGGTGTATAAATTTTTTACA ACAAAAAACTTGTCATGCACACCTTGCAATAGGCCTATTAACACGGTCAGGCAACTAATAGAATA GACTTGGTCCAAGGCGTCCACAACAGGGGTGTGCGGCAAGTTTGCCGAATTTGCCGTTTGCCGAG CTTGGCAAATTTGCCGAATTTGACGAGCACGGCAAATTTCAAAAAAGTAAATTTGCCGAATTTGC CGAGCTCGGCAAACTTCGAAACTTGTTGCACACATCAAAAATTGG Found at i:894295 original size:43 final size:42 Alignment explanation
Indices: 894197--894297 Score: 144 Period size: 43 Copynumber: 2.4 Consensus size: 42 894187 AGTTTTTTTC * * ** 894197 CGGCAAATCGACAAATTTCCGGAATTGACCTTTCCAGCAAAT 1 CGGCAAATCGGCAAATTTCCAGAATTGAAATTTCCAGCAAAT * * 894239 CAGCAAATCGGCAAATTTCCAGAATTGAAAATTTCTAGCAAAT 1 CGGCAAATCGGCAAATTTCCAGAATTG-AAATTTCCAGCAAAT * 894282 CGGCAAATTGGCAAAT 1 CGGCAAATCGGCAAAT 894298 CGGCAATCCG Statistics Matches: 50, Mismatches: 8, Indels: 1 0.85 0.14 0.02 Matches are distributed among these distances: 42 24 0.48 43 26 0.52 ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24 Consensus pattern (42 bp): CGGCAAATCGGCAAATTTCCAGAATTGAAATTTCCAGCAAAT Left flanking sequence: Indices 893697 -- 894196 CGATCATGTTGAGTCCTGAAGTTTGAAAGTTAAAATCAATGTCAGTTATTTAATGAAGAAATGGA AAACCGGACTCACAGCAGTTGGGACTTTAAAATAAGTAAATAAAAAACTGAAATCGTAGCAAACG ACTTTTTACAAATTCACAGAATTATATCTTTTAACGAATTTTCACCCTGTTCTGTGGGTTCTTTT ACAGTTTTATAACACACACAAAAACCAAATCATATGCTTTCCGAACAAAATGACCCACCTTCATT ACTAGTACTGAGGATGGCGACCTCTGGTGGAAAGGAGTTTGGCTTGAGAGTGATAAAACCGTGCA CAACACGTGTATCATCTCCAAACCAAGATGTGCTTCTGAAAATTGAGTTGGTGAAACATGATGAT TATTAAGTAAGTAATGGATATTTTATTTGAAAAGTGCGATTACAAACTGAGCTGCTGCTTATAGA AAAAGATTAGTGTTTTTTGTTTCGTTTTTTTAGTTAGTTTTTTTC Right flanking sequence: Indices 894298 -- 894797 CGGCAATCCGGTAAATTGCCGATTTTCCAAATTTGTCGACAAAATATTTTGCCGAACAACATATG CCGCCCATCCCTGTCTTAAACCTTACCCTAAAAATAATTTGCCATGCACTTTTTTCTATCGAAAA TGAATTTTAGGTGTATAAATTTTTTACAACAAAAAACTTGTCATGCACACCTTGCAATAGGCCTA TTAACACGGTCAGGCAACTAATAGAATAGACTTGGTCCAAGGCGTCCACAACAGGGGTGTGCGGC AAGTTTGCCGAATTTGCCGTTTGCCGAGCTTGGCAAATTTGCCGAATTTGACGAGCACGGCAAAT TTCAAAAAAGTAAATTTGCCGAATTTGCCGAGCTCGGCAAACTTCGAAACTTGTTGCACACATCA AAAATTGGACAATACTATTTTGACCAAAACCATTGATTCTTTGCCCAAAAATTTTGTAAAATGAC ACAAAATTGAGTGATTTTGAAATTTAAGCAGACACACAACTTATT Found at i:894313 original size:16 final size:16 Alignment explanation
Indices: 894276--894313 Score: 48 Period size: 16 Copynumber: 2.4 Consensus size: 16 894266 AAAATTTCTA ** 894276 GCAAATCGGCAAATTG 1 GCAAATCGGCAAACCG * 894292 GCAAATCGGCAATCCG 1 GCAAATCGGCAAACCG * 894308 GTAAAT 1 GCAAAT 894314 TGCCGATTTT Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18 Consensus pattern (16 bp): GCAAATCGGCAAACCG Left flanking sequence: Indices 893776 -- 894275 GCAGTTGGGACTTTAAAATAAGTAAATAAAAAACTGAAATCGTAGCAAACGACTTTTTACAAATT CACAGAATTATATCTTTTAACGAATTTTCACCCTGTTCTGTGGGTTCTTTTACAGTTTTATAACA CACACAAAAACCAAATCATATGCTTTCCGAACAAAATGACCCACCTTCATTACTAGTACTGAGGA TGGCGACCTCTGGTGGAAAGGAGTTTGGCTTGAGAGTGATAAAACCGTGCACAACACGTGTATCA TCTCCAAACCAAGATGTGCTTCTGAAAATTGAGTTGGTGAAACATGATGATTATTAAGTAAGTAA TGGATATTTTATTTGAAAAGTGCGATTACAAACTGAGCTGCTGCTTATAGAAAAAGATTAGTGTT TTTTGTTTCGTTTTTTTAGTTAGTTTTTTTCCGGCAAATCGACAAATTTCCGGAATTGACCTTTC CAGCAAATCAGCAAATCGGCAAATTTCCAGAATTGAAAATTTCTA Right flanking sequence: Indices 894314 -- 894813 TGCCGATTTTCCAAATTTGTCGACAAAATATTTTGCCGAACAACATATGCCGCCCATCCCTGTCT TAAACCTTACCCTAAAAATAATTTGCCATGCACTTTTTTCTATCGAAAATGAATTTTAGGTGTAT AAATTTTTTACAACAAAAAACTTGTCATGCACACCTTGCAATAGGCCTATTAACACGGTCAGGCA ACTAATAGAATAGACTTGGTCCAAGGCGTCCACAACAGGGGTGTGCGGCAAGTTTGCCGAATTTG CCGTTTGCCGAGCTTGGCAAATTTGCCGAATTTGACGAGCACGGCAAATTTCAAAAAAGTAAATT TGCCGAATTTGCCGAGCTCGGCAAACTTCGAAACTTGTTGCACACATCAAAAATTGGACAATACT ATTTTGACCAAAACCATTGATTCTTTGCCCAAAAATTTTGTAAAATGACACAAAATTGAGTGATT TTGAAATTTAAGCAGACACACAACTTATTCAGAAACCAGATGTGT Found at i:894613 original size:27 final size:25 Alignment explanation
Indices: 894568--894624 Score: 75 Period size: 27 Copynumber: 2.2 Consensus size: 25 894558 AAGTTTGCCG * ** 894568 AATTTGCCGTTTGCCGAGCTTGGCA 1 AATTTGCCGTTTGACGAGCACGGCA 894593 AATTTGCCGAATTTGACGAGCACGGCA 1 AATTTGCCG--TTTGACGAGCACGGCA 894620 AATTT 1 AATTT 894625 CAAAAAAGTA Statistics Matches: 27, Mismatches: 3, Indels: 2 0.84 0.09 0.06 Matches are distributed among these distances: 25 9 0.33 27 18 0.67 ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30 Consensus pattern (25 bp): AATTTGCCGTTTGACGAGCACGGCA Left flanking sequence: Indices 894068 -- 894567 GTTGGTGAAACATGATGATTATTAAGTAAGTAATGGATATTTTATTTGAAAAGTGCGATTACAAA CTGAGCTGCTGCTTATAGAAAAAGATTAGTGTTTTTTGTTTCGTTTTTTTAGTTAGTTTTTTTCC GGCAAATCGACAAATTTCCGGAATTGACCTTTCCAGCAAATCAGCAAATCGGCAAATTTCCAGAA TTGAAAATTTCTAGCAAATCGGCAAATTGGCAAATCGGCAATCCGGTAAATTGCCGATTTTCCAA ATTTGTCGACAAAATATTTTGCCGAACAACATATGCCGCCCATCCCTGTCTTAAACCTTACCCTA AAAATAATTTGCCATGCACTTTTTTCTATCGAAAATGAATTTTAGGTGTATAAATTTTTTACAAC AAAAAACTTGTCATGCACACCTTGCAATAGGCCTATTAACACGGTCAGGCAACTAATAGAATAGA CTTGGTCCAAGGCGTCCACAACAGGGGTGTGCGGCAAGTTTGCCG Right flanking sequence: Indices 894625 -- 895124 CAAAAAAGTAAATTTGCCGAATTTGCCGAGCTCGGCAAACTTCGAAACTTGTTGCACACATCAAA AATTGGACAATACTATTTTGACCAAAACCATTGATTCTTTGCCCAAAAATTTTGTAAAATGACAC AAAATTGAGTGATTTTGAAATTTAAGCAGACACACAACTTATTCAGAAACCAGATGTGTGTCAGT AGTTTTGGTTCTCCAAACACATCAAATTTCTCGGAGTATGTAACTTGGCACATATGTAGCACGGC AAATTTGCCAAATTTGCCGAACTGAGTATATTGGTGACCTACAGTCTTTCTGATTTTCTCTGTGC CCCTCCCTCTTTTTGTGTGTCAATGCCTTGCCGTTGGGCGGCAGAGCAAAGCGGAAAAACTGTAG GTTGCTACATATGTGCCAAGTTACATATATAGATTGCAATATAGATAAACATCTTTATACCGCTT AGTGGCAAGACATTTGGGCATTCTATAGTGCAATCTATATTTGTA Found at i:897234 original size:11 final size:11 Alignment explanation
Indices: 897206--897234 Score: 37 Period size: 10 Copynumber: 2.7 Consensus size: 11 897196 CCCAAAATGT * * 897206 TACCAAACAGA 1 TACGAAATAGA 897217 T-CGAAATAGA 1 TACGAAATAGA 897227 TACGAAAT 1 TACGAAAT 897235 TTTAAGCGAA Statistics Matches: 15, Mismatches: 2, Indels: 2 0.79 0.11 0.11 Matches are distributed among these distances: 10 8 0.53 11 7 0.47 ACGTcount: A:0.52, C:0.17, G:0.14, T:0.17 Consensus pattern (11 bp): TACGAAATAGA Left flanking sequence: Indices 896706 -- 897205 TATTTTCATTTTTTGCTGATTGAACTGTAGACCATTGTAGAGTATATAACACAATTCGATGTGTC GTTTTTGGCAAAAATGCTGCTTATCTCTCAATATGCCAACTGTTACAGGTTTGTTGTGTGGTCCT AACTTATCAATCTGTATACAAAGTGTTTCTCTTATCTATAATTTGACCCTCTGTAGGAGGATATT GTGAATAAGAGACGTTCTAGTCCCAATGGTTCCTTAGCGGTTGCCCAGTGGCCCTTTTGTATCCA CTACGTTTTGTGTTATCCTAATAATAAAATACGATTATTTTAAATTGTGAGGACAGAACAAGGTT TTACACATTTCTAATTAGTTAAAACAATCTAAAGACCTCAAGGAATGGATTGATTTGATTTGCAT GTCTCAGTAACTATGTGCGTGATTAAATAAGTCTAATAGTGCAAAATTGTCAACAGCTTCCAAAG TTTTGGGGTCTCGGGCATGCTCCAATTTTTTTAATCCCAAAATGT Right flanking sequence: Indices 897235 -- 897734 TTTAAGCGAAAAATTATTCGAAACAATTCAGTATTGATAAACAACAATTTGGTAAAAATTGAGCT AATAGTTTAAATTTTTGCGGATAGGTGTGTTTTGTTTTACTAGCTGCTCGAGAGGTTTTATGATT TAATTTTGAAATAGTTTGAGAGTGAAAAATAATCATGTTACTCTCATTATTTTACTGAAAACTTA TCAATCCGAAAATACGTTTGCAACAAAAAAAACGTATCACATGCTAACAATTACGTTAGAACAAG AAACAAACTTATCTTGATCAGATTTACAATGTGTTGTTTTTTGTTGGAAAAATATGGCAACACGA CAATGAGATAACATCTAAAATGTTTCATGGAAGTTGCCACATTAAAAAAAAACAGAAAGCGGCTT AAAACTATTGCCATCCCAAAATTTGGAAAATTTACTTGAAGAAATCAAAATTTGGAACTGATTCT TGCGGGCACTGTTCAATTCTTCAACCACAATTTACTATAGCTCAT Found at i:898566 original size:22 final size:22 Alignment explanation
Indices: 898541--898919 Score: 429 Period size: 22 Copynumber: 17.2 Consensus size: 22 898531 TAAGATTTTA ** * 898541 GTCAGTGCAATGAAATTTCGTG 1 GTCAGTGCAATTGAATTTTGTG * * 898563 GTCAGTGCAATTAAATTTTGTT 1 GTCAGTGCAATTGAATTTTGTG * 898585 GTCAGTGCAGTTGAATTTTGTG 1 GTCAGTGCAATTGAATTTTGTG * * ** * 898607 GCCATTGCAGCTGAATTTTGTT 1 GTCAGTGCAATTGAATTTTGTG * * * * 898629 GTCAGTACAGTTGAGTTTTTTG 1 GTCAGTGCAATTGAATTTTGTG * * * 898651 GTCAGTGCAATGGAATGTCGTG 1 GTCAGTGCAATTGAATTTTGTG 898673 GTCAGTGCAATTGAATTTTGTG 1 GTCAGTGCAATTGAATTTTGTG * * 898695 GTCAGTGCAGTTGAATTTCGTG 1 GTCAGTGCAATTGAATTTTGTG * ** * 898717 GCCAGTGCAGCTGAATTTTGTT 1 GTCAGTGCAATTGAATTTTGTG * * * 898739 GTCAGTGCAGTTGAGTTTTTTG 1 GTCAGTGCAATTGAATTTTGTG * * * 898761 GTCAGTGCAGTTGACTTTCGTG 1 GTCAGTGCAATTGAATTTTGTG ** * 898783 GTCAGTGCAATGAAATTTCGTG 1 GTCAGTGCAATTGAATTTTGTG * 898805 GTCAGTGCAATTGAATTTTGTT 1 GTCAGTGCAATTGAATTTTGTG * * 898827 GTCAGTGCAGTTGAATGTTGTG 1 GTCAGTGCAATTGAATTTTGTG * * ** 898849 GTCAGTGCAGTTGAGTTTTTCG 1 GTCAGTGCAATTGAATTTTGTG * ** * * 898871 GTCAGTTCAGCTGAACTTCGTG 1 GTCAGTGCAATTGAATTTTGTG * * 898893 GCCAGTGCAATTGAATTTCGTG 1 GTCAGTGCAATTGAATTTTGTG 898915 GTCAG 1 GTCAG 898920 ATGAGGAAAA Statistics Matches: 288, Mismatches: 69, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 22 288 1.00 ACGTcount: A:0.20, C:0.13, G:0.29, T:0.38 Consensus pattern (22 bp): GTCAGTGCAATTGAATTTTGTG Left flanking sequence: Indices 898041 -- 898540 ACAGAAGTCGCGATCACACAACGAATATGCCGATCGCTCTCTCTGTCTCCTTGTTCGGCGTTTCC AACCGGCTCTACACCTCCCACCACATTTCGACTTTCTCTGCTTCACTGCGCCGTTTCGTCTTGGG TTGTGTCTCGTCTCCACTTCTTCGTTGCCTTCCCAACCTCTTCACTTGTGCGTTCCCCTCGTTCC GATGAATATGATGATTCTGACAAACTGGAATTCAATTTTGAAAACGAAAACGAGACACCGAACCG GGGGGCAAAGCGATTCTCTTTCCCTTCTCAATTATGATGAACAATTATATCCAAATTATCATGAA TTTTGATTGCGGAATCGAATTTTAGGCCGGTTTGGTGAAACTTAAACACATATCTCTATAAGGAA AGAAAAATGTAGCATTGAATTAAAAGTATATGTTTTTTTCCAATCTTGTGATAAGTAATTTTATA GATATTTGCATTGGGCAATAGGCTCAATGCCCGTTTAAGATTTTA Right flanking sequence: Indices 898920 -- 899419 ATGAGGAAAACAAATCTGGTACTGTTTTTTACATGTCTATGTAAAGTTTTTCGTGGAAACAGAAG CCCCAGAACTTTTATCCAGAACTTTCATTCAATCTTATCGCAACATTGTGTTCACCAAGGAAGTA CGCAACCAAAAAAAACTGGAAGCAGCCAGCCAGTTTCTTTTTTCGAACGCAATGTTCCGGTTATT GCGTCAAGCGATATGTTTCAATTACAATTGCGCAATGGAACACTTTAGAAGTGTAGGATTTAAGC AACGCTGTATCAGATTTCGGATTTTTGATTCCGCGTTTCCCATTTCTACCCTTTTTCCATGTTAT CTTTATCGTTTGACACAAAATGCGCAACAACAGGTTGACAGACCTTGGGGTTTCAAAGAAAATTA GGAAAAAACTGGCATGAAGTGCCCACAAGGAAGAAAATACTTTGAAAATATTATATTTTTTTTGG TTGTGCCCTCAAATTCTTAAAATTTGTTGAGTTTTTAACACAGCA Found at i:900227 original size:34 final size:34 Alignment explanation
Indices: 900189--900265 Score: 91 Period size: 34 Copynumber: 2.3 Consensus size: 34 900179 ATTTTTGACA * * 900189 TTTCGGCAATTCGATAATTGCCGAATTTGAAAGT 1 TTTCGGCAATTCGACAATTGCCGAATTTGAAAAT * * * ** * 900223 TTTCGGCAATTTGGCAATTGTCGTGTTTTAAAAT 1 TTTCGGCAATTCGACAATTGCCGAATTTGAAAAT * 900257 TTTTGGCAA 1 TTTCGGCAA 900266 CCGTAGTTTT Statistics Matches: 34, Mismatches: 9, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 34 34 1.00 ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40 Consensus pattern (34 bp): TTTCGGCAATTCGACAATTGCCGAATTTGAAAAT Left flanking sequence: Indices 899689 -- 900188 ATTCGAAATGAATTACCACCAAGTTTCCACTAATGCCGCAAACAATGTAACTCCAATTAGAACAC AAGCACTAGGCATAAGTATTCCGTTTTGACTGTCTCTCGGGGGTTTTGTCCACGTCATAATAATG TAGATGAAAAATGCGAAGAACTCAATGATGGTCCACTGAAAAGTACAAAATTGTATTGTTTCCTG TCACTTATAAGATATTTCTTCTCCTAAAATTTGATAAGAATATGTAAAATTAAAAATTTCAAAAA GATCAACGAGAACAGGCAAAATAGTTTTTATCGTTTTTTTTTCCAATTTCCACTAATGTTTTCGA AAGTCGATGGAATAATCCTAGTTTTCGGCAAATTGGCAATTCGACATTTTTCGAGTTCAAAAAGA GTTGAAATAAAAATCTTCGAAAATACTTATTTTTTCGATTTTTCTACAATACTGAAAACGTTTTT TTTGGCATTTTTAGATTTACTTATGGGAATTGAAAATTTTTGACA Right flanking sequence: Indices 900266 -- 900765 CCGTAGTTTTCGTGAACTGCCGCACATCACTGGAATAAAATCAATATAATTTTGAAAACCCTGTA CCTGCCAAATAACATGTATAAAATACCAATTCCTCCTTCTGCTCTTCCACATAGAGAGAGTGAAC ACTGAAATGTTTTTTTTTTCAAAAATTGAAATGGAATTTTCACTCACAAATTATTGCAATTGACA GAAAGAGAAACGCAAAGTAGCTCAAAGCTATTTGAGCTCCATAGCCTTGAAAATTGTCGGTGTAG AATGTTTTCCCGTCATTTATCCAGAAATCGATAGCAATCGTCGCGCAGAAAACTTCAAGTTTTTT GAATTAAGTAGAGGAAAATAAGAAAAAAGAATACCCAAAGCGAAAATTTCCACCGTGCAAATCAG AGGGATCGCATCACGGAGAGATATACATCCAAGGCAGCATTTGTGCTTTGAACAGGGTTTAAGGA AGAACACCTAGAAAAAGCCAAAAGAATATGTTGGTCAGTGCAAAT Found at i:901724 original size:11 final size:12 Alignment explanation
Indices: 901696--901724 Score: 37 Period size: 11 Copynumber: 2.5 Consensus size: 12 901686 AAAAAAACTC * * 901696 AAATTTAATTGC 1 AAATTTAATCGA 901708 AAATTT-ATCGA 1 AAATTTAATCGA 901719 AAATTT 1 AAATTT 901725 TTTGTGTAAA Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 11 9 0.60 12 6 0.40 ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41 Consensus pattern (12 bp): AAATTTAATCGA Left flanking sequence: Indices 901196 -- 901695 GGTAACCACGATGCCCGGATACATGAAGCCTTTTGTCTACTCGATAGCTCATAAGAGTAGTTGGA AGGCTTTTCGAATTTCAGAATAGGTTTCAATATGTCAAAAACATGCATTTATGTAGGAGTATTGG ATTTCCGTTTACAATCTTTTTCAGCCCCTTTCACATGACATCTCAATTAGCAGTTTCTATTCTCA TATTTTTGCAAATGTGATGCTTCATCTTTCCGTTTTTCAACTCACCCTGGATAATGAAAGTACCG AGAGCCGAATGCTACTCCAAGCAGATGACGTTGAAAGTCGGGAAGCGTATGGATCCCGGGGTGGC ATTAGCTGAAAAAGTTGTTGTTTAAAATTTTTGGCTTTTTGTAAATGCAGTTGAATTGTCAAATA GTCGAAAACTTTCGACGACAAAATTGAGTACAACCCAACAAAATCAAATACAAGGTACCTTTTTT GAATTAAACTTTATTAAATTAGAAACATAAAATTGAAAAAAACTC Right flanking sequence: Indices 901725 -- 902224 TTTGTGTAAAATTTTGAATAAGCGAGATAACTAGGCTGTCGATTAAAAATTATAACGATATTTTG AAACTTCTAAAAAAAATTATAAAGTGCTACTCAATGTTTCAAAAAAAACCTGCTCAAAAAAAGAT GCAATATTTAGATTTCCTTGCTCTGTTTGAAAGTCTAGGAAGAGCACATGTTGTGAGCCAATCAG TAATGTCTTTTTGTTCCTGGTTTAGACTTTCTAACAAACACATAACATAACGTTTTGGAAGGTAG TGGAATATACAAACAAAATGTTTTCTGCTATTTATACAGAAAGCTGAGTTTTCGTAGAAATTTGA ATTTTAGAACTTATCAACGGCAATTTGAATTTTCAATAATTTAACAATTCGCCAATTGCAGAAAA TATAAAATTCACAAACAATCGCAGCTCCCTAAAAAATTTCGGAATTTCAATTTTTAGGTTGTGAA ATTATAACATTGCCAAAATTTTTTGAGACCCCCATTTGAATTCCT Found at i:903127 original size:13 final size:13 Alignment explanation
Indices: 903106--903136 Score: 48 Period size: 13 Copynumber: 2.4 Consensus size: 13 903096 TATGAGACAT * * 903106 GAAACTGGAATTG 1 GAAAATGGAACTG 903119 GAAAATGGAACTG 1 GAAAATGGAACTG 903132 GAAAA 1 GAAAA 903137 AAAAACATAT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.48, C:0.06, G:0.29, T:0.16 Consensus pattern (13 bp): GAAAATGGAACTG Left flanking sequence: Indices 902606 -- 903105 TGAAAAATATATGAGATTTCAGAAGTCGTATGTTGAAAATTAAATTAATCATAAAATCCAAAATA AAATGATGTGCTTTATTGCAACAATATGATTAAATTCAAAAATGTATACACAGAAAAGGTAGAAT AATTTTTTAAAATGATTTTCTCGTTTTTATCGTTACAACAAAAACGTTACCACAGGACAAAATGA AAAAATACTTTAATGCTAATTTTGAAAAAGACCAGGAAAAAAAGAAAAAAGTGAAAGTTCACACA TTGAAGCAGCACTGAATAATTAATTGAATTTGAAAACAGATTTCTCCGGTGTCTTGACAAATTTC TTCTTTAGATGTTTTTCTATTACAATTCAACATGTCTGAGTGAGTGATGGAGACTTTTCGGATAA AAAAAAACAAACTCGTGGATTCTGTTTTCAGTTTTGCCACGCTTCTAGAATACAAAAACTTCTTT AAATTGGATTTTCTGACTTTAAAAATAAAGATTGATATGAGACAT Right flanking sequence: Indices 903137 -- 903636 AAAAACATATGACGTCATCACAATAATTATTTTCCAATTTTTTTTGTTTTTACTAAAAAATGTTC ATGAAACTATAAAGCCCATCAAGTTAGAGGAGAAGTTGTACAAACCAGGGGTGAGAGGTAAACGA TTTTTCCGGCTTATTGGCGAACTGTTAAATTGACAGAATTTGAATTCCCGGCAAATCAGCAAATC AATAGACAAATTGCCAGATTAAAACTTTACGTACAATCGGCAAGCCGGCAAATTGTGGATTTGCA CATTTTTTTGGAAATTTCAACTTCACCTGGTAAAATTGAACACATGCTATGAATGTTCCTACATC TATTTTGAAAAGTAAGAAAATTCTATAAAAATATCTAGAGAAAACAGGAAAAAACTTCAAAAAGA TACAGTTTCGAGTGTTTCCGTCTTCTTTTTCCTTCTAATCATTTCCGGAAATTCTGATATCCGGA GGCAAGCCATTAATTTGGCGGAATTTGCCGGTTCGACTGTAAATG Found at i:903731 original size:11 final size:11 Alignment explanation
Indices: 903709--903731 Score: 32 Period size: 11 Copynumber: 2.1 Consensus size: 11 903699 AAAACCAAAA * 903709 TTTTTCGTTTT 1 TTTTTCGATTT * 903720 TTTTTGGATTT 1 TTTTTCGATTT 903731 T 1 T 903732 ACAGTTTGGT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.04, C:0.04, G:0.13, T:0.78 Consensus pattern (11 bp): TTTTTCGATTT Left flanking sequence: Indices 903209 -- 903708 TATAAAGCCCATCAAGTTAGAGGAGAAGTTGTACAAACCAGGGGTGAGAGGTAAACGATTTTTCC GGCTTATTGGCGAACTGTTAAATTGACAGAATTTGAATTCCCGGCAAATCAGCAAATCAATAGAC AAATTGCCAGATTAAAACTTTACGTACAATCGGCAAGCCGGCAAATTGTGGATTTGCACATTTTT TTGGAAATTTCAACTTCACCTGGTAAAATTGAACACATGCTATGAATGTTCCTACATCTATTTTG AAAAGTAAGAAAATTCTATAAAAATATCTAGAGAAAACAGGAAAAAACTTCAAAAAGATACAGTT TCGAGTGTTTCCGTCTTCTTTTTCCTTCTAATCATTTCCGGAAATTCTGATATCCGGAGGCAAGC CATTAATTTGGCGGAATTTGCCGGTTCGACTGTAAATGGCTATTTTCCGCCCATCCCTGGAATTT GCAGGTTTTCGGTTAAGCTTATTTGGGTGTTGCCAAAAACCAAAA Right flanking sequence: Indices 903732 -- 904231 ACAGTTTGGTCGAAAAAACCAAAAATCGAAAAATCAAGAACATTTCGGTGGTACCCCTGATCCGC AAAGCTCTCGTCCGGATCATAGCATCCTTCCAAACCTCAAAAACTGTTTTATCGTTAAGATATTA CGGGACAATGAGATCATGAGAAGATGCCTATTTACTGGCGCGAAAATATTGGCAGGCCGCGGCAG CGAGATATCATGTGACGAAGAGAGACGCACGTCGCTTCGCTACGAGATATTTGGCGCCAGAAAAA TAGGTATTCTCATGATCTCATAGTTCCGTAATATCAAGTTTGGGGACACCGGGGACCAAGCCTCT CTTTGAAGTGGGTCACAAAAATTGGAACAGTACCGTGAAATAGAAAAGGGAAAGAAGACTAGTTC TCCGCCTGCCACTGCGATTCGAAAATTAACCAAGGAAAGAAATGAGACCTAAAACTTTTATTCTA GAATTTTCAATTCGCCTTCTTTTCTCTATTTCACTGTGTTCTTTT Found at i:904952 original size:10 final size:11 Alignment explanation
Indices: 904926--904950 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 904916 GAATTTTTGC 904926 AAAATTGAAAA 1 AAAATTGAAAA 904937 AAAATTGAAAA 1 AAAATTGAAAA 904948 AAA 1 AAA 904951 TTAGAATTTA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16 Consensus pattern (11 bp): AAAATTGAAAA Left flanking sequence: Indices 904426 -- 904925 TGGAAAAAATAATATTAGAAAACATGAAAACAAGCTTCAGAAGGATTTCAGATGTTCTTTTTTAT ACTAAATAAGAGCAAATCCAAATTGGAAACTGAAATAGTCTGAAAATGGATTTATTCAGTTCTAA GAAAAAGTTCAAGTTGAGTGGCGTGTCTGGACAAACAAGTAAAGTGGGCCGGAAACAGAATTGGC AGCTGAAATCTTCTGAAAGTTGTCAAAAAACAGGAGTACTTAAAAATATGACGTGAAGTTCAGAA CTACATATGCAAAACGTTTTTTGGACCTACTGACCAAAAACTGGGAAAATGTAAGAAAAATTTTA AAAACATTAGTTTATTTATTTTTAATTTTACAAAAATATAATATTTTGAATTTTTGATCGGCCGT TCAGAGTTTTCCCGGGCAAATTTACTGGTTTTTACTGTTTTTTGTTCAATTTATTAAAATCAGGG GTCCAAAAATGTGAGCATGGCATAATCAGCTATAAGAATTTTTGC Right flanking sequence: Indices 904951 -- 905450 TTAGAATTTAAATAAAAAATTTTCATACTCATTTTCAGTCATTTTCAGCCAATTTTGTACTACAT ATTTAAGGCAAAATCCACACGGACAAATTTTTTGAAAGCAAAATTAAAACTTCTCAAATCCTATT CTATCGTAGCCGCACTATAGCTTGTACAACAAGGAAAAAAATCTATATTTTCATATCTTGTTCGC ATGATGTCAGGTTAATGTATTCACGAGAACAAACCTATGAACAAAAGTGCCAATTCACTTTGCTT CAAAATAGCAAAGTTGTGTTTTAAACTGAACTATAAGAAACTAGTGATTATGTTTGTAAAACGGA ATAATTATCTGCATATGTGAAGATTTTCAAACTTTGAGACAAACATTGTTTATTAGTCTGAAACA ATAAGATAAAGCGGAAAAAAGTGCGACGTAAAAGTTCGAAAAAGTTCCATGATAGGAGAGGAGCC TGATTTCCAAATTAGTTAAAAATCAGTTGCAGCCAACTTTGGATG Found at