TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11217838 original size:7 final size:7 Alignment explanation
Indices: 11217826--11217840 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11217816 ATATACATAT 11217826 CCTGTAG 1 CCTGTAG 11217833 CCTGTAG 1 CCTGTAG 11217840 C 1 C 11217841 AGGGGTGGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27 Consensus pattern (7 bp): CCTGTAG Left flanking sequence: Indices 11217326 -- 11217825 GTCTCAAATTGACTCCGCACTTGTTTTATGGCTCCATTTTGTACTGAAAATTATAGATTTCATTC AATTTTGGAAAAAATTCCGCCTTTTGGAAAAAATCCCGAAACCAACCAAAAAAGAGTTACCCTGT TAGTTGAGGCTGAAAAAAATTGTAGTTTGTAGTCCCTAATGACGTGTGGCAAATCTCATTTTTCA CAGCTCATTTGCCGCTCTAACATAGATACATTCCTTGACATTATCTGGACGGTGGTACTGTAATT AACTCGTATTACCGTACGTTTTAATTACAAATCAGATCGAATGGAAATTATGTTAATTTGTTGAG AAAACTGAAAATACTGCTGATTGCAATGGCGGCCGACATCCTACAGGTCAAAGAGCATCTGGTTG TGTAGTTTGTAGTCTGAGGTTAAAAGTCCAGGGGCACTACAAACTACAGAGTTGATTATCAATAT GAACGAAATTTGCGAAAACTGGATCAGGTTGAGGGATATACATAT Right flanking sequence: Indices 11217841 -- 11218340 AGGGGTGGCCGGAAAACGATTTTTCCGGCAAATCGGCAAATTGCCGGAATTGTAATTTCCGGCAA ATTGGCAAACCGGCAATTTGCCGATTTGCCGAACGGCAATTGCCACCCAATTCTGGTTTGTAGTC TAAAATTAATAAAATTATTAAAACGAAATATTTGCAGTCGTAACTTTACAATTTCCAGATTCTGT TCGCCAACCAACAAGCCGGCAATGCGATCCTCGACGCGGGCTCCAGTGAAAATGACGGATCCACG TCATCATCCCAACCATCACCACCAGCCGATCCAACAGCCTCACTTGACTCGCTGGCAATGTTCGA ATCACTTTTAGCCGAGTCGATGAACGGGAATGTGCTCGATGCGAATACCTCGTCAGCTGACCAGA AAGCGGCGGCTCGCAAGCGAAAGAGCACACCGATGAAGGTTCCGAAGTCGGAAAATGGTGCTGGA TATATTTGTCCGATGGATGGATGTAATAAGGTGTTCAAGGAGAAA Found at i:11217879 original size:8 final size:8 Alignment explanation
Indices: 11217866--11217881 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11217856 ACGATTTTTC 11217866 CGGCAAAT 1 CGGCAAAT 11217874 CGGCAAAT 1 CGGCAAAT 11217882 TGCCGGAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): CGGCAAAT Left flanking sequence: Indices 11217366 -- 11217865 GTACTGAAAATTATAGATTTCATTCAATTTTGGAAAAAATTCCGCCTTTTGGAAAAAATCCCGAA ACCAACCAAAAAAGAGTTACCCTGTTAGTTGAGGCTGAAAAAAATTGTAGTTTGTAGTCCCTAAT GACGTGTGGCAAATCTCATTTTTCACAGCTCATTTGCCGCTCTAACATAGATACATTCCTTGACA TTATCTGGACGGTGGTACTGTAATTAACTCGTATTACCGTACGTTTTAATTACAAATCAGATCGA ATGGAAATTATGTTAATTTGTTGAGAAAACTGAAAATACTGCTGATTGCAATGGCGGCCGACATC CTACAGGTCAAAGAGCATCTGGTTGTGTAGTTTGTAGTCTGAGGTTAAAAGTCCAGGGGCACTAC AAACTACAGAGTTGATTATCAATATGAACGAAATTTGCGAAAACTGGATCAGGTTGAGGGATATA CATATCCTGTAGCCTGTAGCAGGGGTGGCCGGAAAACGATTTTTC Right flanking sequence: Indices 11217882 -- 11218381 TGCCGGAATTGTAATTTCCGGCAAATTGGCAAACCGGCAATTTGCCGATTTGCCGAACGGCAATT GCCACCCAATTCTGGTTTGTAGTCTAAAATTAATAAAATTATTAAAACGAAATATTTGCAGTCGT AACTTTACAATTTCCAGATTCTGTTCGCCAACCAACAAGCCGGCAATGCGATCCTCGACGCGGGC TCCAGTGAAAATGACGGATCCACGTCATCATCCCAACCATCACCACCAGCCGATCCAACAGCCTC ACTTGACTCGCTGGCAATGTTCGAATCACTTTTAGCCGAGTCGATGAACGGGAATGTGCTCGATG CGAATACCTCGTCAGCTGACCAGAAAGCGGCGGCTCGCAAGCGAAAGAGCACACCGATGAAGGTT CCGAAGTCGGAAAATGGTGCTGGATATATTTGTCCGATGGATGGATGTAATAAGGTGTTCAAGGA GAAAGGATCAGTGCATCGACATTTTGTTACGCATATTGGAATGCG Found at i:11217914 original size:8 final size:8 Alignment explanation
Indices: 11217901--11217925 Score: 29 Period size: 8 Copynumber: 3.1 Consensus size: 8 11217891 TGTAATTTCC 11217901 GGCAAATT 1 GGCAAATT ** 11217909 GGCAAACC 1 GGCAAATT * 11217917 GGCAATTT 1 GGCAAATT 11217925 G 1 G 11217926 CCGATTTGCC Statistics Matches: 12, Mismatches: 5, Indels: 0 0.71 0.29 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20 Consensus pattern (8 bp): GGCAAATT Left flanking sequence: Indices 11217401 -- 11217900 AAAATTCCGCCTTTTGGAAAAAATCCCGAAACCAACCAAAAAAGAGTTACCCTGTTAGTTGAGGC TGAAAAAAATTGTAGTTTGTAGTCCCTAATGACGTGTGGCAAATCTCATTTTTCACAGCTCATTT GCCGCTCTAACATAGATACATTCCTTGACATTATCTGGACGGTGGTACTGTAATTAACTCGTATT ACCGTACGTTTTAATTACAAATCAGATCGAATGGAAATTATGTTAATTTGTTGAGAAAACTGAAA ATACTGCTGATTGCAATGGCGGCCGACATCCTACAGGTCAAAGAGCATCTGGTTGTGTAGTTTGT AGTCTGAGGTTAAAAGTCCAGGGGCACTACAAACTACAGAGTTGATTATCAATATGAACGAAATT TGCGAAAACTGGATCAGGTTGAGGGATATACATATCCTGTAGCCTGTAGCAGGGGTGGCCGGAAA ACGATTTTTCCGGCAAATCGGCAAATTGCCGGAATTGTAATTTCC Right flanking sequence: Indices 11217926 -- 11218425 CCGATTTGCCGAACGGCAATTGCCACCCAATTCTGGTTTGTAGTCTAAAATTAATAAAATTATTA AAACGAAATATTTGCAGTCGTAACTTTACAATTTCCAGATTCTGTTCGCCAACCAACAAGCCGGC AATGCGATCCTCGACGCGGGCTCCAGTGAAAATGACGGATCCACGTCATCATCCCAACCATCACC ACCAGCCGATCCAACAGCCTCACTTGACTCGCTGGCAATGTTCGAATCACTTTTAGCCGAGTCGA TGAACGGGAATGTGCTCGATGCGAATACCTCGTCAGCTGACCAGAAAGCGGCGGCTCGCAAGCGA AAGAGCACACCGATGAAGGTTCCGAAGTCGGAAAATGGTGCTGGATATATTTGTCCGATGGATGG ATGTAATAAGGTGTTCAAGGAGAAAGGATCAGTGCATCGACATTTTGTTACGCATATTGGAATGC GTTTTAATGTGAGTATTTTTAATGTGAGGCTTTGTCTCAGGTTTA Found at i:11217932 original size:8 final size:8 Alignment explanation
Indices: 11217921--11217937 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 11217911 CAAACCGGCA 11217921 ATTTGCCG 1 ATTTGCCG 11217929 ATTTGCCG 1 ATTTGCCG 11217937 A 1 A 11217938 ACGGCAATTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35 Consensus pattern (8 bp): ATTTGCCG Left flanking sequence: Indices 11217421 -- 11217920 AAATCCCGAAACCAACCAAAAAAGAGTTACCCTGTTAGTTGAGGCTGAAAAAAATTGTAGTTTGT AGTCCCTAATGACGTGTGGCAAATCTCATTTTTCACAGCTCATTTGCCGCTCTAACATAGATACA TTCCTTGACATTATCTGGACGGTGGTACTGTAATTAACTCGTATTACCGTACGTTTTAATTACAA ATCAGATCGAATGGAAATTATGTTAATTTGTTGAGAAAACTGAAAATACTGCTGATTGCAATGGC GGCCGACATCCTACAGGTCAAAGAGCATCTGGTTGTGTAGTTTGTAGTCTGAGGTTAAAAGTCCA GGGGCACTACAAACTACAGAGTTGATTATCAATATGAACGAAATTTGCGAAAACTGGATCAGGTT GAGGGATATACATATCCTGTAGCCTGTAGCAGGGGTGGCCGGAAAACGATTTTTCCGGCAAATCG GCAAATTGCCGGAATTGTAATTTCCGGCAAATTGGCAAACCGGCA Right flanking sequence: Indices 11217938 -- 11218437 ACGGCAATTGCCACCCAATTCTGGTTTGTAGTCTAAAATTAATAAAATTATTAAAACGAAATATT TGCAGTCGTAACTTTACAATTTCCAGATTCTGTTCGCCAACCAACAAGCCGGCAATGCGATCCTC GACGCGGGCTCCAGTGAAAATGACGGATCCACGTCATCATCCCAACCATCACCACCAGCCGATCC AACAGCCTCACTTGACTCGCTGGCAATGTTCGAATCACTTTTAGCCGAGTCGATGAACGGGAATG TGCTCGATGCGAATACCTCGTCAGCTGACCAGAAAGCGGCGGCTCGCAAGCGAAAGAGCACACCG ATGAAGGTTCCGAAGTCGGAAAATGGTGCTGGATATATTTGTCCGATGGATGGATGTAATAAGGT GTTCAAGGAGAAAGGATCAGTGCATCGACATTTTGTTACGCATATTGGAATGCGTTTTAATGTGA GTATTTTTAATGTGAGGCTTTGTCTCAGGTTTAGACTAAGTGTAC Found at i:11217985 original size:9 final size:9 Alignment explanation
Indices: 11217971--11217993 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 11217961 GTTTGTAGTC 11217971 TAAAATTAA 1 TAAAATTAA * 11217980 TAAAATTAT 1 TAAAATTAA 11217989 TAAAA 1 TAAAA 11217994 CGAAATATTT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (9 bp): TAAAATTAA Left flanking sequence: Indices 11217471 -- 11217970 AAAATTGTAGTTTGTAGTCCCTAATGACGTGTGGCAAATCTCATTTTTCACAGCTCATTTGCCGC TCTAACATAGATACATTCCTTGACATTATCTGGACGGTGGTACTGTAATTAACTCGTATTACCGT ACGTTTTAATTACAAATCAGATCGAATGGAAATTATGTTAATTTGTTGAGAAAACTGAAAATACT GCTGATTGCAATGGCGGCCGACATCCTACAGGTCAAAGAGCATCTGGTTGTGTAGTTTGTAGTCT GAGGTTAAAAGTCCAGGGGCACTACAAACTACAGAGTTGATTATCAATATGAACGAAATTTGCGA AAACTGGATCAGGTTGAGGGATATACATATCCTGTAGCCTGTAGCAGGGGTGGCCGGAAAACGAT TTTTCCGGCAAATCGGCAAATTGCCGGAATTGTAATTTCCGGCAAATTGGCAAACCGGCAATTTG CCGATTTGCCGAACGGCAATTGCCACCCAATTCTGGTTTGTAGTC Right flanking sequence: Indices 11217994 -- 11218493 CGAAATATTTGCAGTCGTAACTTTACAATTTCCAGATTCTGTTCGCCAACCAACAAGCCGGCAAT GCGATCCTCGACGCGGGCTCCAGTGAAAATGACGGATCCACGTCATCATCCCAACCATCACCACC AGCCGATCCAACAGCCTCACTTGACTCGCTGGCAATGTTCGAATCACTTTTAGCCGAGTCGATGA ACGGGAATGTGCTCGATGCGAATACCTCGTCAGCTGACCAGAAAGCGGCGGCTCGCAAGCGAAAG AGCACACCGATGAAGGTTCCGAAGTCGGAAAATGGTGCTGGATATATTTGTCCGATGGATGGATG TAATAAGGTGTTCAAGGAGAAAGGATCAGTGCATCGACATTTTGTTACGCATATTGGAATGCGTT TTAATGTGAGTATTTTTAATGTGAGGCTTTGTCTCAGGTTTAGACTAAGTGTACAGCTTAGGCTT GAGTTTAGGCTTAGGCTTCAGGCTTACACTTAGGCTTAGGCTTAC Found at i:11219626 original size:8 final size:8 Alignment explanation
Indices: 11219610--11219627 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11219600 ATAAGTTTTA 11219610 TTATCGAT 1 TTATCGAT * 11219618 TTATTGAT 1 TTATCGAT 11219626 TT 1 TT 11219628 TTTTTCCTGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.22, C:0.06, G:0.11, T:0.61 Consensus pattern (8 bp): TTATCGAT Left flanking sequence: Indices 11219110 -- 11219609 AATTTTTTGAGAATTAATTTGGTTCGGACTAAAAATTTAGAATTTCGCGCCAAATTTTTTTAGAA AATAAATTCAAGTTTAGCGCCAATTTTTTTTATAACGAATTTTGAGTTCTGCGCCAAAATTTTAC GGAAAAAAAATTGAATTTCGAGCCAAAACTTTTTTGGAAAAAAATTTTCAGAGAAATCCAGCATG CATGGAAGTGAGCAACGCCCTTGAATTCAACACCTCCCTGAATACCTCAATTAGTGAAGCGCTGT CTGGCCCGCTGAGCAAAAACTCGTCGCCCACGAAGCAAATGGTCTCGGCTCCGTGAAAAGTTTTT TTTTTTTTCGTTGCTTTCCCCCTTTTTAGACCTCAAATATTCCTGTACTCTCCGATACGCGTGCA ATTTTTATCTCAAACAGACCCACCAAAAGCCCCACCCAATTTATTAGTGAAAAAAGGTTTTAATA ATTAAAATAATTATTATTTTATATCGAGAAATCAGATAAGTTTTA Right flanking sequence: Indices 11219628 -- 11220127 TTTTTCCTGTCTTTGTGTGTTATTTCCTGTCTCTATCCTTGATTTTATTACGCAAATTTTTTTGT TTGGAAATTTTTTTATTATTTCTATATGCATCTAATTTCACTTGTTCTTTTACATACAATTCGAA AATCATAATAATTTTTTTTTCTCGCAAAAATCTCTGAAAATCATCCTTTGCATTTTACACCCCTC CCCACTCAAAACCGTCATAATTTAATTCCCCACTTTTTTTATGGATCGATACTTTTTATGGCAAT AATTTTTTGTTTTTTGTACTTTTTTTTGGACTTTTTTGTCCAAAATTACCCTCTTTTTTGGTGCT TAAACCCCCACCCAAATATTCGTTTTTTTTGCTCCCTTACACACACCGAATGCCTTTACAATAAA AGACTTGTATTTTTTTTTTGAATTTGGATATTTTGAAGAAAAATCGATTATACGAGGTTTAAAAA AAATTTGGAAGAAAACTTATTTTTTAGAATATTTTTTTCCGGCAA Found at i:11219902 original size:7 final size:7 Alignment explanation
Indices: 11219890--11219904 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11219880 ATGGCAATAA 11219890 TTTTTTG 1 TTTTTTG 11219897 TTTTTTG 1 TTTTTTG 11219904 T 1 T 11219905 ACTTTTTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87 Consensus pattern (7 bp): TTTTTTG Left flanking sequence: Indices 11219390 -- 11219889 TCGTCGCCCACGAAGCAAATGGTCTCGGCTCCGTGAAAAGTTTTTTTTTTTTTCGTTGCTTTCCC CCTTTTTAGACCTCAAATATTCCTGTACTCTCCGATACGCGTGCAATTTTTATCTCAAACAGACC CACCAAAAGCCCCACCCAATTTATTAGTGAAAAAAGGTTTTAATAATTAAAATAATTATTATTTT ATATCGAGAAATCAGATAAGTTTTATTATCGATTTATTGATTTTTTTTCCTGTCTTTGTGTGTTA TTTCCTGTCTCTATCCTTGATTTTATTACGCAAATTTTTTTGTTTGGAAATTTTTTTATTATTTC TATATGCATCTAATTTCACTTGTTCTTTTACATACAATTCGAAAATCATAATAATTTTTTTTTCT CGCAAAAATCTCTGAAAATCATCCTTTGCATTTTACACCCCTCCCCACTCAAAACCGTCATAATT TAATTCCCCACTTTTTTTATGGATCGATACTTTTTATGGCAATAA Right flanking sequence: Indices 11219905 -- 11220404 ACTTTTTTTTGGACTTTTTTGTCCAAAATTACCCTCTTTTTTGGTGCTTAAACCCCCACCCAAAT ATTCGTTTTTTTTGCTCCCTTACACACACCGAATGCCTTTACAATAAAAGACTTGTATTTTTTTT TTGAATTTGGATATTTTGAAGAAAAATCGATTATACGAGGTTTAAAAAAAATTTGGAAGAAAACT TATTTTTTAGAATATTTTTTTCCGGCAAAACGGCAACTTGCCGGAATTGAAATATTCCAGCAAAT TTGCCGAATTGTCGGAAATTTTTAATTACGGCAGTTTTGCCTATTTGCCGGAAATTTAACTTAAA TTTCCCACCGAAACTTAAAAACCATTAAAATTTGAATTTCCAGACTATGTTTTTCTTAAAATAAA ATTTCAAATTTGGCGCCAAAATTTTTCGAAATCAAAAAGGTTTGAATATCGGATCAAAAACCCGT AAAAGTTTTTTTTGAACAACTGAAAATTGAAAAAAAAAATTTTTA Found at i:11220392 original size:7 final size:7 Alignment explanation
Indices: 11220371--11220392 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 11220361 AAAGTTTTTT 11220371 TTGAACAA 1 TTGAA-AA * 11220379 CTGAAAA 1 TTGAAAA 11220386 TTGAAAA 1 TTGAAAA 11220393 AAAAAATTTT Statistics Matches: 12, Mismatches: 2, Indels: 1 0.80 0.13 0.07 Matches are distributed among these distances: 7 8 0.67 8 4 0.33 ACGTcount: A:0.55, C:0.09, G:0.14, T:0.23 Consensus pattern (7 bp): TTGAAAA Left flanking sequence: Indices 11219871 -- 11220370 ATACTTTTTATGGCAATAATTTTTTGTTTTTTGTACTTTTTTTTGGACTTTTTTGTCCAAAATTA CCCTCTTTTTTGGTGCTTAAACCCCCACCCAAATATTCGTTTTTTTTGCTCCCTTACACACACCG AATGCCTTTACAATAAAAGACTTGTATTTTTTTTTTGAATTTGGATATTTTGAAGAAAAATCGAT TATACGAGGTTTAAAAAAAATTTGGAAGAAAACTTATTTTTTAGAATATTTTTTTCCGGCAAAAC GGCAACTTGCCGGAATTGAAATATTCCAGCAAATTTGCCGAATTGTCGGAAATTTTTAATTACGG CAGTTTTGCCTATTTGCCGGAAATTTAACTTAAATTTCCCACCGAAACTTAAAAACCATTAAAAT TTGAATTTCCAGACTATGTTTTTCTTAAAATAAAATTTCAAATTTGGCGCCAAAATTTTTCGAAA TCAAAAAGGTTTGAATATCGGATCAAAAACCCGTAAAAGTTTTTT Right flanking sequence: Indices 11220393 -- 11220892 AAAAAATTTTTAACCCAAAATTACGTGAATTCAATGGCTATTCAAATTCAACAGAGCTTTTATTT GAAAATCTTAACTAAATAACAAGTAGGATCTTTAAAAACTTCACCAATTAATACCGTAATTAGTG TCTAGAAACCAAAAAAAGGGAACAAATTTAATTTGAACCTGCATTTGGGCAGCATAATTCACGAG TTCTTTCATTGCTAAGTGTCTGGTTAGAATGGCATCCTTCAACGAGCAGGTCTGTAAAAATGAAT TGTAAATTTATTGAAAATGTTATGTCATTTCTCTCTGCGAATCCTTTTTTTACTACGACTTAGTT TTACTACGGCTTAGTTTTTATTTAATAAGTTCTAGTTTTTTTTTTCTATTATAAAATGTACCACT TTTGGCATAATGTGTTGAAACGTTGACTAACCATATCTTTTATACAATGTAAAATGTTTTCCGTA AAAATATAAAGTTTATCACTTTTTGATATCTCGCCTGTCGGAGGA Found at i:11222321 original size:9 final size:9 Alignment explanation
Indices: 11222307--11222332 Score: 38 Period size: 8 Copynumber: 3.0 Consensus size: 9 11222297 TTAGATTCAA 11222307 CATTTTTTT 1 CATTTTTTT * 11222316 CA-TTTTTA 1 CATTTTTTT 11222324 CATTTTTTT 1 CATTTTTTT 11222333 TTTGAGAAAT Statistics Matches: 14, Mismatches: 2, Indels: 2 0.78 0.11 0.11 Matches are distributed among these distances: 8 7 0.50 9 7 0.50 ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73 Consensus pattern (9 bp): CATTTTTTT Left flanking sequence: Indices 11221807 -- 11222306 CTGTTCACATAATTAGACAACAAGATAACAATCTCTCAAGTATTCTCATACATTTCTTTATCGAC ATCCTTTTCTCAGAATGGCCAGAGTAACTGTAACCATAAAGGACTGTGGCAGCCACACTGACACT GTGATAGAAGTTAAACGACACTTCGAAGAGCCGAAAGAGGAAAAGTTTACACTCGTGGATAACAA ACTGATTAGGCTCACTGATGGCATGCCAAAGCAGTACCAGGAGAAGAAGAACAACGTTGAAACCA CTAAGGTGAATCACGCTGTAATTTCAAAACCTGATTAGCTACATGAATGTGTGAAATGTATTTCG TGAAAGTTAAACTCATGGAAATATTTTTGGCATTTTCTGAATAGAATATTATTTTTTCTACAGTT TGAATATATAAAACTACTATTTTCACAATCGTAGGCATTAATGTTATTTTCAATGTGGAAATCAT AGCATTTAACGTATTTTACAAGCAATTAATTCAAATTAGATTCAA Right flanking sequence: Indices 11222333 -- 11222832 TTTGAGAAATTTGACCAAAAAATTTATTTTTCGTCCGAACTTGTTTAAATCAGGGCTGTCATATT GAGCGTCCAGTCGTCCGGTTTTTAGAATTTCATTAGGTATACGACCGGACGCTCGATATTCCAGC CCTAGTTTAAATGTGTTGAGTTAATAAATTCGAGGATTTGAGTATTGCAATGTTTCATATAAAGA TTCAGGGAGATTGGCTCGGTCACGTGGCCTGGGTGGACACTAGCGACAGAGCGGCGTTGCCGCGG ACCGTGACCTGCAACTGCCACCCACACTACGGACAACTCGGGCCGAAACTGCACACCCCAACATT ATGCATATATTTTGATTTTCTTTATTATTCCAAACCAAGATCCGGGACTCTTGTGTGTTTATAGT CCGCGGGCTTATTTAGGCAAAGGAACTCCTGCCGAAAGTGAGAATTTTGACACAATCTTGCCGAA AGTAGACAGACTCCTGCCAACTCTAAGTAGTAACTAAGTCGCCAA Found at i:11223061 original size:9 final size:9 Alignment explanation
Indices: 11223043--11223062 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 11223033 TCACTTACCA 11223043 TCGAATTTT 1 TCGAATTTT * 11223052 TCGCATTTT 1 TCGAATTTT 11223061 TC 1 TC 11223063 CTTACAAATT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.15, C:0.20, G:0.10, T:0.55 Consensus pattern (9 bp): TCGAATTTT Left flanking sequence: Indices 11222543 -- 11223042 TCGGTCACGTGGCCTGGGTGGACACTAGCGACAGAGCGGCGTTGCCGCGGACCGTGACCTGCAAC TGCCACCCACACTACGGACAACTCGGGCCGAAACTGCACACCCCAACATTATGCATATATTTTGA TTTTCTTTATTATTCCAAACCAAGATCCGGGACTCTTGTGTGTTTATAGTCCGCGGGCTTATTTA GGCAAAGGAACTCCTGCCGAAAGTGAGAATTTTGACACAATCTTGCCGAAAGTAGACAGACTCCT GCCAACTCTAAGTAGTAACTAAGTCGCCAACGCTCAGCAGTATTTCCCTGAGTATAGTCCGCGGG CCTACTATAGAAAAATATACAATCCCAGAAAAACTATAGTATTTAAAAAAAAGCTAAGCATTTTA GTAAAACATCGAAATATGAAAAACGTGTGGGAAAAGTTAGTGAAATAGTATGTATTTTCCTTTTT TTTTGTTGGAAAATTTCAGAAAATAGCAGTCAGGCTCACTTACCA Right flanking sequence: Indices 11223063 -- 11223562 CTTACAAATTGTCCTTGAGTACATGATAAGATATCTCTTACAATCCCTAATAACCAATTTCCCTT CTGGGTGTCTTTTCCGGATTGCTCGGCTCAAAATTGATCCGAAAACGCAAAAGAGCAGGAAAATT ATGGAACATTTGCCTATGTTCATTCTGGAAAAAAAACAACAATTTTTCTATGAATTGAATTGTGA AAAATACAATATTATTTTTTTCAAAAAAAAAAAAGTTTAAGAACAAAAAAATTTGAAAACTAATT TCAGGCCGTTCCAGGCCGAATTTCAGGCCGTTTAAAAAATTAAAAAAGCAAAACATTGAAACAAT TTCGAACAGTCACAAATTGATAAAACATGCCAATACTCTGCACAAATTCATATCAGTTAGAAGAA CTATAACACATAGTTTTTATGGCTAAATGAAATAAATAGATCGAAGGTTAATAATTCTATTACAG AAAAAATACGATCGCACAAAAATAAACAACGACGCAACGACACTC Found at i:11223367 original size:8 final size:8 Alignment explanation
Indices: 11223354--11223388 Score: 33 Period size: 8 Copynumber: 4.2 Consensus size: 8 11223344 TTCAGGCCGT 11223354 TTAAAAAA 1 TTAAAAAA 11223362 TTAAAAAA 1 TTAAAAAA ** * 11223370 GCAAAACA 1 TTAAAAAA * 11223378 TTGAAACAA 1 TT-AAAAAA 11223387 TT 1 TT 11223389 TCGAACAGTC Statistics Matches: 19, Mismatches: 7, Indels: 1 0.70 0.26 0.04 Matches are distributed among these distances: 8 13 0.68 9 6 0.32 ACGTcount: A:0.63, C:0.09, G:0.06, T:0.23 Consensus pattern (8 bp): TTAAAAAA Left flanking sequence: Indices 11222854 -- 11223353 GTATAGTCCGCGGGCCTACTATAGAAAAATATACAATCCCAGAAAAACTATAGTATTTAAAAAAA AGCTAAGCATTTTAGTAAAACATCGAAATATGAAAAACGTGTGGGAAAAGTTAGTGAAATAGTAT GTATTTTCCTTTTTTTTTGTTGGAAAATTTCAGAAAATAGCAGTCAGGCTCACTTACCATCGAAT TTTTCGCATTTTTCCTTACAAATTGTCCTTGAGTACATGATAAGATATCTCTTACAATCCCTAAT AACCAATTTCCCTTCTGGGTGTCTTTTCCGGATTGCTCGGCTCAAAATTGATCCGAAAACGCAAA AGAGCAGGAAAATTATGGAACATTTGCCTATGTTCATTCTGGAAAAAAAACAACAATTTTTCTAT GAATTGAATTGTGAAAAATACAATATTATTTTTTTCAAAAAAAAAAAAGTTTAAGAACAAAAAAA TTTGAAAACTAATTTCAGGCCGTTCCAGGCCGAATTTCAGGCCGT Right flanking sequence: Indices 11223389 -- 11223888 TCGAACAGTCACAAATTGATAAAACATGCCAATACTCTGCACAAATTCATATCAGTTAGAAGAAC TATAACACATAGTTTTTATGGCTAAATGAAATAAATAGATCGAAGGTTAATAATTCTATTACAGA AAAAATACGATCGCACAAAAATAAACAACGACGCAACGACACTCCGCTGTTTTTAAGCCCCGCCC ACGATTTCATTTGCACTGCGACCGCCACATTTCAGTGCAAATGAAATCGTGGGCGGGGCTTAAAA ACAGCGGAGTGTCGTTGCGTCGTTGTTTATTTTTGTGCGATCGTATTTTTTCTATAATATTCTGA GTGTAAGGAATTCATGACCGACCTTTGCTGCATGGCCTAGAAAATTCGGGAAAACTCGGCCATTG ATTTTTGTCTCGTGAGAGGCGTTCAAAACTGATAATTCTAGTCAATCTGTTGAGGAAAATTCAAA CTTCAATTTTTCAATGTGTTTTAAATTTATTAGCGAGAAATTTAA Found at i:11223772 original size:10 final size:10 Alignment explanation
Indices: 11223753--11223772 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11223743 GCATGGCCTA * 11223753 GAAAATTCGG 1 GAAAACTCGG 11223763 GAAAACTCGG 1 GAAAACTCGG 11223773 CCATTGATTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15 Consensus pattern (10 bp): GAAAACTCGG Left flanking sequence: Indices 11223253 -- 11223752 TGTGAAAAATACAATATTATTTTTTTCAAAAAAAAAAAAGTTTAAGAACAAAAAAATTTGAAAAC TAATTTCAGGCCGTTCCAGGCCGAATTTCAGGCCGTTTAAAAAATTAAAAAAGCAAAACATTGAA ACAATTTCGAACAGTCACAAATTGATAAAACATGCCAATACTCTGCACAAATTCATATCAGTTAG AAGAACTATAACACATAGTTTTTATGGCTAAATGAAATAAATAGATCGAAGGTTAATAATTCTAT TACAGAAAAAATACGATCGCACAAAAATAAACAACGACGCAACGACACTCCGCTGTTTTTAAGCC CCGCCCACGATTTCATTTGCACTGCGACCGCCACATTTCAGTGCAAATGAAATCGTGGGCGGGGC TTAAAAACAGCGGAGTGTCGTTGCGTCGTTGTTTATTTTTGTGCGATCGTATTTTTTCTATAATA TTCTGAGTGTAAGGAATTCATGACCGACCTTTGCTGCATGGCCTA Right flanking sequence: Indices 11223773 -- 11224272 CCATTGATTTTTGTCTCGTGAGAGGCGTTCAAAACTGATAATTCTAGTCAATCTGTTGAGGAAAA TTCAAACTTCAATTTTTCAATGTGTTTTAAATTTATTAGCGAGAAATTTAAATTTTACAAAATCT TGGCGCTAATTTTAAATAGAATTTTTCAAAAATTTCAGCGCGGAATTCAAATTTTGAGGGAAATT AAACATTTTGGCGGAATAATTAAAATGTTAAATTCCATGATTTTTGCGAAAAATTTGAATTTTCG AAAAAAAAAATTGGTGCGAAATTTAAATTATGTGTATTTTTTTCAAAAATTTAGGCGCGAATTCA AATTTTAGTAATTTTTCCAAAAATTTTAAATATTTCAGCGGGAAATTCGAATTTTCAAAACAAAA AATTTGGCGCGAACTTCAAATTATTTTTAATATTTTAGCGGGAAATTCAAATTTTAGTTATTTTT CCAAAAATTCAGGCGCGAAATTAGAATTTATTGTGCGATTCTGAA Found at i:11224296 original size:7 final size:7 Alignment explanation
Indices: 11224281--11224303 Score: 32 Period size: 7 Copynumber: 3.3 Consensus size: 7 11224271 AAATATGCTG 11224281 AAACCAA 1 AAACCAA * 11224288 AAACGAA 1 AAACCAA * 11224295 AAAACAA 1 AAACCAA 11224302 AA 1 AA 11224304 CTTCAAAATA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.78, C:0.17, G:0.04, T:0.00 Consensus pattern (7 bp): AAACCAA Left flanking sequence: Indices 11223781 -- 11224280 TTTTGTCTCGTGAGAGGCGTTCAAAACTGATAATTCTAGTCAATCTGTTGAGGAAAATTCAAACT TCAATTTTTCAATGTGTTTTAAATTTATTAGCGAGAAATTTAAATTTTACAAAATCTTGGCGCTA ATTTTAAATAGAATTTTTCAAAAATTTCAGCGCGGAATTCAAATTTTGAGGGAAATTAAACATTT TGGCGGAATAATTAAAATGTTAAATTCCATGATTTTTGCGAAAAATTTGAATTTTCGAAAAAAAA AATTGGTGCGAAATTTAAATTATGTGTATTTTTTTCAAAAATTTAGGCGCGAATTCAAATTTTAG TAATTTTTCCAAAAATTTTAAATATTTCAGCGGGAAATTCGAATTTTCAAAACAAAAAATTTGGC GCGAACTTCAAATTATTTTTAATATTTTAGCGGGAAATTCAAATTTTAGTTATTTTTCCAAAAAT TCAGGCGCGAAATTAGAATTTATTGTGCGATTCTGAAATATGCTG Right flanking sequence: Indices 11224304 -- 11224803 CTTCAAAATACATTAAGCAAAAAAAAATCAATGGGAAAATGTCATCATAGGTAATACAAAAAAAT AATTTTTTGGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAATT GGTGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCAATAAAAATC AACGTCGACTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTT CGACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTC TTTTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTC TCATCTCTCGTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTT GAATCTGAAAATTTGAATATTATTTCCGGAATTTTGTGTGTAGAT Found at i:11224299 original size:8 final size:8 Alignment explanation
Indices: 11224286--11224303 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11224276 TGCTGAAACC * 11224286 AAAAACGA 1 AAAAACAA 11224294 AAAAACAA 1 AAAAACAA 11224302 AA 1 AA 11224304 CTTCAAAATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.83, C:0.11, G:0.06, T:0.00 Consensus pattern (8 bp): AAAAACAA Left flanking sequence: Indices 11223786 -- 11224285 TCTCGTGAGAGGCGTTCAAAACTGATAATTCTAGTCAATCTGTTGAGGAAAATTCAAACTTCAAT TTTTCAATGTGTTTTAAATTTATTAGCGAGAAATTTAAATTTTACAAAATCTTGGCGCTAATTTT AAATAGAATTTTTCAAAAATTTCAGCGCGGAATTCAAATTTTGAGGGAAATTAAACATTTTGGCG GAATAATTAAAATGTTAAATTCCATGATTTTTGCGAAAAATTTGAATTTTCGAAAAAAAAAATTG GTGCGAAATTTAAATTATGTGTATTTTTTTCAAAAATTTAGGCGCGAATTCAAATTTTAGTAATT TTTCCAAAAATTTTAAATATTTCAGCGGGAAATTCGAATTTTCAAAACAAAAAATTTGGCGCGAA CTTCAAATTATTTTTAATATTTTAGCGGGAAATTCAAATTTTAGTTATTTTTCCAAAAATTCAGG CGCGAAATTAGAATTTATTGTGCGATTCTGAAATATGCTGAAACC Right flanking sequence: Indices 11224304 -- 11224803 CTTCAAAATACATTAAGCAAAAAAAAATCAATGGGAAAATGTCATCATAGGTAATACAAAAAAAT AATTTTTTGGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAATT GGTGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCAATAAAAATC AACGTCGACTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTT CGACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTC TTTTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTC TCATCTCTCGTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTT GAATCTGAAAATTTGAATATTATTTCCGGAATTTTGTGTGTAGAT Found at i:11224539 original size:9 final size:9 Alignment explanation
Indices: 11224522--11224539 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11224512 CCGATCCCTG 11224522 TCCCCCCGA 1 TCCCCCCGA * 11224531 TCCCTCCGA 1 TCCCCCCGA 11224540 CGTTCCGAAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.11, C:0.61, G:0.11, T:0.17 Consensus pattern (9 bp): TCCCCCCGA Left flanking sequence: Indices 11224022 -- 11224521 TTGAATTTTCGAAAAAAAAAATTGGTGCGAAATTTAAATTATGTGTATTTTTTTCAAAAATTTAG GCGCGAATTCAAATTTTAGTAATTTTTCCAAAAATTTTAAATATTTCAGCGGGAAATTCGAATTT TCAAAACAAAAAATTTGGCGCGAACTTCAAATTATTTTTAATATTTTAGCGGGAAATTCAAATTT TAGTTATTTTTCCAAAAATTCAGGCGCGAAATTAGAATTTATTGTGCGATTCTGAAATATGCTGA AACCAAAAACGAAAAAACAAAACTTCAAAATACATTAAGCAAAAAAAAATCAATGGGAAAATGTC ATCATAGGTAATACAAAAAAATAATTTTTTGGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAA TGAGAATTTGGAGCAAGAAATTGGTGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTT ATCGTTAAAATCAATAAAAATCAACGTCGACTATGCCGATCCCTG Right flanking sequence: Indices 11224540 -- 11225039 CGTTCCGAACTTCTCGACCGTTTTCGACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTG ATTATGTCGTGATGAAGATTGCTCTTTTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCG ATTTTCTCTCCTTCTCATCGTCTCTCATCTCTCGTTCTCTCTTCTTTTCCGACGACGATTTTTCC GATTTTTTATTATCGCCGTTTTTTGAATCTGAAAATTTGAATATTATTTCCGGAATTTTGTGTGT AGATTGTGTAGTTCTATGTAGTCTAGAGAATGACTACAAACTACAAAATCACATCAGCCTCAATC AAGGTTCAAACTACAAACTACAGACTTTTTGAAAGGAAATTTCTAAATATTTAGCCGAAGACTAC AAACTACAAAATCAGCTTAGCCTAACCCAAAATAGTAAAATCCCAATATTTTGACTACAAACTAC ACGTTTGCGAGTGAAAATTTCAAAAATTCACACTTTTCATTTGTA Found at i:11224697 original size:10 final size:9 Alignment explanation
Indices: 11224682--11224702 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 11224672 TTTCTCTCCT 11224682 TCTCATCGTC 1 TCTCATC-TC 11224692 TCTCATCTC 1 TCTCATCTC 11224701 TC 1 TC 11224703 GTTCTCTCTT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 4 0.36 10 7 0.64 ACGTcount: A:0.10, C:0.43, G:0.05, T:0.43 Consensus pattern (9 bp): TCTCATCTC Left flanking sequence: Indices 11224182 -- 11224681 ATTATTTTTAATATTTTAGCGGGAAATTCAAATTTTAGTTATTTTTCCAAAAATTCAGGCGCGAA ATTAGAATTTATTGTGCGATTCTGAAATATGCTGAAACCAAAAACGAAAAAACAAAACTTCAAAA TACATTAAGCAAAAAAAAATCAATGGGAAAATGTCATCATAGGTAATACAAAAAAATAATTTTTT GGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAATTGGTGGAAA AAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCAATAAAAATCAACGTCGA CTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTTCGACGGCG ATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTCTTTTTCAC GACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCT Right flanking sequence: Indices 11224703 -- 11225202 GTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGAATCTGAA AATTTGAATATTATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATGA CTACAAACTACAAAATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAA AGGAAATTTCTAAATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAAT AGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACAC TTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATA TGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAA TTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGA Found at i:11224708 original size:8 final size:7 Alignment explanation
Indices: 11224673--11224714 Score: 43 Period size: 8 Copynumber: 5.6 Consensus size: 7 11224663 TTACTCGATT 11224673 TTCTCTCC 1 TTCTCT-C 11224681 TTCTCATC 1 TTCTC-TC * 11224689 GTCTCTC 1 TTCTCTC * 11224696 ATCTCTC 1 TTCTCTC 11224703 GTTCTCTC 1 -TTCTCTC 11224711 TTCT 1 TTCT 11224715 TTTCCGACGA Statistics Matches: 29, Mismatches: 3, Indels: 5 0.78 0.08 0.14 Matches are distributed among these distances: 7 12 0.41 8 16 0.55 9 1 0.03 ACGTcount: A:0.05, C:0.40, G:0.05, T:0.50 Consensus pattern (7 bp): TTCTCTC Left flanking sequence: Indices 11224173 -- 11224672 GAACTTCAAATTATTTTTAATATTTTAGCGGGAAATTCAAATTTTAGTTATTTTTCCAAAAATTC AGGCGCGAAATTAGAATTTATTGTGCGATTCTGAAATATGCTGAAACCAAAAACGAAAAAACAAA ACTTCAAAATACATTAAGCAAAAAAAAATCAATGGGAAAATGTCATCATAGGTAATACAAAAAAA TAATTTTTTGGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAAT TGGTGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCAATAAAAAT CAACGTCGACTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTT TCGACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCT CTTTTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATT Right flanking sequence: Indices 11224715 -- 11225214 TTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGAATCTGAAAATTTGAATATT ATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATGACTACAAACTACA AAATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAAAGGAAATTTCTA AATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAATAGTAAAATCCCA ATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACACTTTTCATTTGTA TTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATATGTGTAGTTTGT AGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAATTAGAAAAAAAA AATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAA Found at i:11224844 original size:7 final size:7 Alignment explanation
Indices: 11224832--11224846 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11224822 CTAGAGAATG 11224832 ACTACAA 1 ACTACAA 11224839 ACTACAA 1 ACTACAA 11224846 A 1 A 11224847 ATCACATCAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13 Consensus pattern (7 bp): ACTACAA Left flanking sequence: Indices 11224332 -- 11224831 CAATGGGAAAATGTCATCATAGGTAATACAAAAAAATAATTTTTTGGGAGTTTTCCAGAAAAACG GGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAATTGGTGGAAAAAATCGGCGGTAAAAATCGG AAAAATCAATAATTTATCGTTAAAATCAATAAAAATCAACGTCGACTATGCCGATCCCTGTCCCC CCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTTCGACGGCGATCCCGTTCCGAAGATCGGC TTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTCTTTTTCACGACTTTTCGATCGTTTTTTG CTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTCTCATCTCTCGTTCTCTCTTCTTTTCCGA CGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGAATCTGAAAATTTGAATATTATTTCCG GAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATG Right flanking sequence: Indices 11224847 -- 11225346 ATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAAAGGAAATTTCTAAA TATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAATAGTAAAATCCCAAT ATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACACTTTTCATTTGTATT CTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATATGTGTAGTTTGTAG CCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAATTAGAAAAAAAAAA TTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAAAGAAAAGAATTTTTGAAATTT TTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGTGAAGAAAACTTGTAGTTTGTA GTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAGAC Found at i:11224881 original size:7 final size:7 Alignment explanation
Indices: 11224871--11224890 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 11224861 AATCAAGGTT 11224871 CAAACTA 1 CAAACTA 11224878 CAAACTA 1 CAAACTA * 11224885 CAGACT 1 CAAACT 11224891 TTTTGAAAGG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.50, C:0.30, G:0.05, T:0.15 Consensus pattern (7 bp): CAAACTA Left flanking sequence: Indices 11224371 -- 11224870 TTTTTTGGGAGTTTTCCAGAAAAACGGGCGGCTTTGAACAATGAGAATTTGGAGCAAGAAATTGG TGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCAATAAAAATCAA CGTCGACTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTTCG ACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTCTT TTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTCTC ATCTCTCGTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGA ATCTGAAAATTTGAATATTATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAG AGAATGACTACAAACTACAAAATCACATCAGCCTCAATCAAGGTT Right flanking sequence: Indices 11224891 -- 11225390 TTTTGAAAGGAAATTTCTAAATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAAC CCAAAATAGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAA TTCACACTTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTG GGAAATATGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAAC TACAAAATTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAA AGAAAAGAATTTTTGAAATTTTTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGT GAAGAAAACTTGTAGTTTGTAGTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAGA CTACAAACTACAAAATGAGCAAAGCCTCACCAAATGTTCAGGAAT Found at i:11224937 original size:7 final size:7 Alignment explanation
Indices: 11224925--11224939 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11224915 TTAGCCGAAG 11224925 ACTACAA 1 ACTACAA 11224932 ACTACAA 1 ACTACAA 11224939 A 1 A 11224940 ATCAGCTTAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13 Consensus pattern (7 bp): ACTACAA Left flanking sequence: Indices 11224425 -- 11224924 CAAGAAATTGGTGGAAAAAATCGGCGGTAAAAATCGGAAAAATCAATAATTTATCGTTAAAATCA ATAAAAATCAACGTCGACTATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTC GACCGTTTTCGACGGCGATCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGA AGATTGCTCTTTTTCACGACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCT CATCGTCTCTCATCTCTCGTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCG CCGTTTTTTGAATCTGAAAATTTGAATATTATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCT ATGTAGTCTAGAGAATGACTACAAACTACAAAATCACATCAGCCTCAATCAAGGTTCAAACTACA AACTACAGACTTTTTGAAAGGAAATTTCTAAATATTTAGCCGAAG Right flanking sequence: Indices 11224940 -- 11225439 ATCAGCTTAGCCTAACCCAAAATAGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGA GTGAAAATTTCAAAAATTCACACTTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAA ATCTAGGTTGAGGCTGGGAAATATGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGG CTCACAGACTACAAACTACAAAATTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAG AGATTTTATTGAAAAAAGAAAAGAATTTTTGAAATTTTTTAGATAAAAAGTGAGATTTTCCCGAA AAATCTCTGCTAAAGTGAAGAAAACTTGTAGTTTGTAGTCTCCGGCCTCAACTATTTCAAAAATT GGTTGAGGCTCACAGACTACAAACTACAAAATGAGCAAAGCCTCACCAAATGTTCAGGAATGTTC AGATTTTTTTTTGGATTTAAAAAATAGATTTTTCGAGTTCTAGAA Found at i:11225024 original size:8 final size:8 Alignment explanation
Indices: 11225008--11225024 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 11224998 TTTGCGAGTG * 11225008 AAAATTTC 1 AAAAATTC 11225016 AAAAATTC 1 AAAAATTC 11225024 A 1 A 11225025 CACTTTTCAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29 Consensus pattern (8 bp): AAAAATTC Left flanking sequence: Indices 11224508 -- 11225007 TATGCCGATCCCTGTCCCCCCGATCCCTCCGACGTTCCGAACTTCTCGACCGTTTTCGACGGCGA TCCCGTTCCGAAGATCGGCTTCTCGATCGGTGATTATGTCGTGATGAAGATTGCTCTTTTTCACG ACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTCTCATCTCTC GTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGAATCTGAA AATTTGAATATTATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATGA CTACAAACTACAAAATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAA AGGAAATTTCTAAATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAAT AGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGAGTG Right flanking sequence: Indices 11225025 -- 11225524 CACTTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAA ATATGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACA AAATTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAAAGAA AAGAATTTTTGAAATTTTTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGTGAAG AAAACTTGTAGTTTGTAGTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAGACTAC AAACTACAAAATGAGCAAAGCCTCACCAAATGTTCAGGAATGTTCAGATTTTTTTTTGGATTTAA AAAATAGATTTTTCGAGTTCTAGAAGCGGTTTTAACTGAATTTTCAAAATTTTTCAGATTTTCCG AAAATTTCTGAATTTTTAATCCAAAAAAAGTGGAATTCCAGTGGG Found at i:11225154 original size:7 final size:7 Alignment explanation
Indices: 11225138--11225156 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 11225128 GTTGAGGCTC * 11225138 ACAGACT 1 ACAAACT 11225145 ACAAACT 1 ACAAACT 11225152 ACAAA 1 ACAAA 11225157 ATTAGAAAAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.58, C:0.26, G:0.05, T:0.11 Consensus pattern (7 bp): ACAAACT Left flanking sequence: Indices 11224638 -- 11225137 ACTTTTCGATCGTTTTTTGCTCTTTTTACTCGATTTTCTCTCCTTCTCATCGTCTCTCATCTCTC GTTCTCTCTTCTTTTCCGACGACGATTTTTCCGATTTTTTATTATCGCCGTTTTTTGAATCTGAA AATTTGAATATTATTTCCGGAATTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATGA CTACAAACTACAAAATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAA AGGAAATTTCTAAATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAAT AGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACAC TTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATA TGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTC Right flanking sequence: Indices 11225157 -- 11225656 ATTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAAAGAAAA GAATTTTTGAAATTTTTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGTGAAGAA AACTTGTAGTTTGTAGTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAGACTACAA ACTACAAAATGAGCAAAGCCTCACCAAATGTTCAGGAATGTTCAGATTTTTTTTTGGATTTAAAA AATAGATTTTTCGAGTTCTAGAAGCGGTTTTAACTGAATTTTCAAAATTTTTCAGATTTTCCGAA AATTTCTGAATTTTTAATCCAAAAAAAGTGGAATTCCAGTGGGTTTTTTGGAATAAAATATTATT TTTTTTGGCTGAAAATTGGCGCTCCGAGACTACAAACTACAAAACCATTCTGTCCCAAAAATCCA AAATCCCAAATGTCCCAAAATCCCAAAAAATTTCAGTTCAAATTT i:11225302 original size:7 final size:7 Alignment explanation
Indices: 11225290--11225303 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11225280 TGAAGAAAAC 11225290 TTGTAGT 1 TTGTAGT 11225297 TTGTAGT 1 TTGTAGT 11225304 CTCCGGCCTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57 Consensus pattern (7 bp): TTGTAGT Left flanking sequence: Indices 11224790 -- 11225289 TTTTGTGTGTAGATTGTGTAGTTCTATGTAGTCTAGAGAATGACTACAAACTACAAAATCACATC AGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAAAGGAAATTTCTAAATATTTAGC CGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAATAGTAAAATCCCAATATTTTGAC TACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACACTTTTCATTTGTATTCTTTAAAA AATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATATGTGTAGTTTGTAGCCTCAACC AATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAATTAGAAAAAAAAAATTTTTTGG ATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAAAGAAAAGAATTTTTGAAATTTTTTAGATA AAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGTGAAGAAAAC Right flanking sequence: Indices 11225304 -- 11225803 CTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAATGAGCAAA GCCTCACCAAATGTTCAGGAATGTTCAGATTTTTTTTTGGATTTAAAAAATAGATTTTTCGAGTT CTAGAAGCGGTTTTAACTGAATTTTCAAAATTTTTCAGATTTTCCGAAAATTTCTGAATTTTTAA TCCAAAAAAAGTGGAATTCCAGTGGGTTTTTTGGAATAAAATATTATTTTTTTTGGCTGAAAATT GGCGCTCCGAGACTACAAACTACAAAACCATTCTGTCCCAAAAATCCAAAATCCCAAATGTCCCA AAATCCCAAAAAATTTCAGTTCAAATTTGGCGGAAAAAAGTGAAAATTGTGAAGAAAACTTGTAG TTTGTAGTCTCCAGCGCGCCTCAATTATTTCAAAAATTGGTTGAGGCTGAGACTACAAACTACAA AATAACATAGCCTCACACAAATATTGAAAAAACATTTTTTTTTTG Found at i:11225357 original size:7 final size:7 Alignment explanation
Indices: 11225341--11225359 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 11225331 GTTGAGGCTC * 11225341 ACAGACT 1 ACAAACT 11225348 ACAAACT 1 ACAAACT 11225355 ACAAA 1 ACAAA 11225360 ATGAGCAAAG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.58, C:0.26, G:0.05, T:0.11 Consensus pattern (7 bp): ACAAACT Left flanking sequence: Indices 11224841 -- 11225340 TACAAAATCACATCAGCCTCAATCAAGGTTCAAACTACAAACTACAGACTTTTTGAAAGGAAATT TCTAAATATTTAGCCGAAGACTACAAACTACAAAATCAGCTTAGCCTAACCCAAAATAGTAAAAT CCCAATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAAATTCACACTTTTCATT TGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCTGGGAAATATGTGTAGT TTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAACTACAAAATTAGAAAA AAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAAAAGAAAAGAATTTTTG AAATTTTTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAGTGAAGAAAACTTGTAG TTTGTAGTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTC Right flanking sequence: Indices 11225360 -- 11225859 ATGAGCAAAGCCTCACCAAATGTTCAGGAATGTTCAGATTTTTTTTTGGATTTAAAAAATAGATT TTTCGAGTTCTAGAAGCGGTTTTAACTGAATTTTCAAAATTTTTCAGATTTTCCGAAAATTTCTG AATTTTTAATCCAAAAAAAGTGGAATTCCAGTGGGTTTTTTGGAATAAAATATTATTTTTTTTGG CTGAAAATTGGCGCTCCGAGACTACAAACTACAAAACCATTCTGTCCCAAAAATCCAAAATCCCA AATGTCCCAAAATCCCAAAAAATTTCAGTTCAAATTTGGCGGAAAAAAGTGAAAATTGTGAAGAA AACTTGTAGTTTGTAGTCTCCAGCGCGCCTCAATTATTTCAAAAATTGGTTGAGGCTGAGACTAC AAACTACAAAATAACATAGCCTCACACAAATATTGAAAAAACATTTTTTTTTTGCAGATTTTCCT GAAATTTTTGAATTTTTAATTCAAAAAAGTGGATTTCCAGTAGGT Found at i:11225470 original size:10 final size:10 Alignment explanation
Indices: 11225455--11225486 Score: 34 Period size: 9 Copynumber: 3.2 Consensus size: 10 11225445 TTTAACTGAA 11225455 TTTTCAAAAT 1 TTTTCAAAAT * 11225465 TTTTC-AGAT 1 TTTTCAAAAT * 11225474 TTTCCGAAAAT 1 TTTTC-AAAAT 11225485 TT 1 TT 11225487 CTGAATTTTT Statistics Matches: 17, Mismatches: 3, Indels: 3 0.74 0.13 0.13 Matches are distributed among these distances: 9 7 0.41 10 5 0.29 11 5 0.29 ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50 Consensus pattern (10 bp): TTTTCAAAAT Left flanking sequence: Indices 11224955 -- 11225454 CCCAAAATAGTAAAATCCCAATATTTTGACTACAAACTACACGTTTGCGAGTGAAAATTTCAAAA ATTCACACTTTTCATTTGTATTCTTTAAAAAATGAGTAAAATATGAAGAAATCTAGGTTGAGGCT GGGAAATATGTGTAGTTTGTAGCCTCAACCAATTCAAAAATTGGTTGAGGCTCACAGACTACAAA CTACAAAATTAGAAAAAAAAAATTTTTTGGATTTTTATTTGGATTTTCAGAGATTTTATTGAAAA AAGAAAAGAATTTTTGAAATTTTTTAGATAAAAAGTGAGATTTTCCCGAAAAATCTCTGCTAAAG TGAAGAAAACTTGTAGTTTGTAGTCTCCGGCCTCAACTATTTCAAAAATTGGTTGAGGCTCACAG ACTACAAACTACAAAATGAGCAAAGCCTCACCAAATGTTCAGGAATGTTCAGATTTTTTTTTGGA TTTAAAAAATAGATTTTTCGAGTTCTAGAAGCGGTTTTAACTGAA Right flanking sequence: Indices 11225487 -- 11225986 CTGAATTTTTAATCCAAAAAAAGTGGAATTCCAGTGGGTTTTTTGGAATAAAATATTATTTTTTT TGGCTGAAAATTGGCGCTCCGAGACTACAAACTACAAAACCATTCTGTCCCAAAAATCCAAAATC CCAAATGTCCCAAAATCCCAAAAAATTTCAGTTCAAATTTGGCGGAAAAAAGTGAAAATTGTGAA GAAAACTTGTAGTTTGTAGTCTCCAGCGCGCCTCAATTATTTCAAAAATTGGTTGAGGCTGAGAC TACAAACTACAAAATAACATAGCCTCACACAAATATTGAAAAAACATTTTTTTTTTGCAGATTTT CCTGAAATTTTTGAATTTTTAATTCAAAAAAGTGGATTTCCAGTAGGTTTTTGAAGTTTTTTGGC TGAAAATTCGCGCTTTAATAGACTACAAACTACAGAAAAACACATTTTTGACGCTAAAATCGGGG AAAAAATTAGCAAAAATGGTATTTTTTTCAACAAAAAGTGAATAT Found at