TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:3754233 original size:8 final size:8 Alignment explanation
Indices: 3754220--3754235 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3754210 AAAGGAGAAC 3754220 ATCAAACA 1 ATCAAACA 3754228 ATCAAACA 1 ATCAAACA 3754236 GCGAGGCGCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12 Consensus pattern (8 bp): ATCAAACA Left flanking sequence: Indices 3753720 -- 3754219 CTATTAAAAATATTGGAACTTGTTTTGCTTTGTTTTTAGTTTTAAAATCCACACCATGTAAATAT GTAGAGGCTGAAAATTGAGTAAAGTGATTTTCAGTGGGAATAACATCCAGCATTTTTTTCCGGAA AACGCGGAGAGGTCATCAAGCGCACTCTAATAAATATACTCATTTCAGGAGAGCCTGAATAACGA ATGGCTACATGTGTTTTAACTATAGCTCCCCCTGTGATTGAAGCTGTTGCTGCATCAGCCGTTGG ACTTTCCGCTGCATCTGCCACAGGAGCTGGCGTTGCATCTGCCGCTGGAGTTGTTGCTGCATCTG CCGCTGGAACTGGCGCTGCATCTACCGCTGGAGTTGTTGCTGCATCTGCCGCTGGAGTTGGGGCT GGAGCTGTTGGGCTTACTCTCGTGCTCCCAGCTGTTTTGATGGGCGTGGGAGCTGGTTTGATAGT AGGTTCAATTGGTCTTTTAGTTTTGGGCCCACCTAAAAGGAGAAC Right flanking sequence: Indices 3754236 -- 3754735 GCGAGGCGCACTCCATGTAGCTCCACAAATTCTCCTCGAAAATCTGAATCATGTTGGTATGAACC CGAAAAAGACCATTTCTACGTTTCCCAAAAAGCACGTAATTCGGAATCAATTCGACTAACCGCCA ATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATACTGTGAGTTGTTGTT GTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCTGAAACAATTGCATA TACATTTCACCGATCGACACAAAATGATTAAACGATGATTTTCATTTTTAAGATTTAATCAACTT AATGAAAATCGGACTGGATCCCCTGTGTTTCGAAAATCTGACTCTTATTGGTATGAACCTGAAAA AGACCATTTCTACGTTTCCAAAGAAGCACGTAATTCGGAATCAATTCGACTAACCGCCAATGTCA TTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATAC Found at i:3755502 original size:7 final size:7 Alignment explanation
Indices: 3755490--3755503 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3755480 TTAAACGATG 3755490 TTTTTCA 1 TTTTTCA 3755497 TTTTTCA 1 TTTTTCA 3755504 GATTTAATAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTTCA Left flanking sequence: Indices 3754990 -- 3755489 TCGACTAACCGCCAATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATAC TGTGAGTTGTTGTTGTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCT GAAACAATTGCATATACATTTCACCGATCGACACAAAATGATTAAACGATGATTTTCATTTTTAA GATTTAATCAACTTAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATTTGACTCTTATTGG TATGAACCTGAAAAAGACCATTTCTACGTTTCCAAAAAAGCACGTACTTCGGAATCAATTCGACT AACCGCCAATGTCATTCCCGGAGAAACATTGAAAACATATGCTGAACTCAATGAAATACTGTGAG TTGTTGTTGTGACTTCGTTCCAAAAATGATTACTATTTGTGAATCCCCAGTGTGGTTCTGAAACA ATTGCATATACATTTCACCGATTGACATAAAATGATTAAACGATG Right flanking sequence: Indices 3755504 -- 3756003 GATTTAATAAACTCAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATCTGACTCTTATTGG TATGAACCTGAAAAAGACCATTTCTACGTTTCCAAGAAAGCACGTACTTCGGAATCAATTCGACT AACCGCCAATGTCGTTTCCGGAGAAAAATGGAAAACATTTGCTGAACTCAAGGAATTACTAGGAA AGTAAGTTGTTGGGGTATCATTCCAAAAAGTGTCACTGTTTGCGATTATGAAATATTTATATTTG ATTGAAATATAATAATTGACGTAAAATGATAAAACGTTGTCTTTCATTCACAAAGTCTTAACTGC TGCAATTTCCCAGAAAAATAATGTTTCGAATATGTTTTCAGAGTAAAACAGTGTTTTCTTCAAAT TAATCACTTTCCTCCTTTTTTCTCTATACCTATGAAATTACTGTTTTCAACAGGAACCAAGACAT GAATTTGGTTTTAATGAATTCTGAAATTGTGTTTTGAGTTTGAAA Found at i:3756007 original size:7 final size:7 Alignment explanation
Indices: 3755997--3756010 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3755987 GTGTTTTGAG 3755997 TTTGAAA 1 TTTGAAA 3756004 TTTGAAA 1 TTTGAAA 3756011 AAGCGGTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): TTTGAAA Left flanking sequence: Indices 3755497 -- 3755996 TTTTTCAGATTTAATAAACTCAATGAAAATCGGACTGGATCCCCTGTGCTTCGAATATCTGACTC TTATTGGTATGAACCTGAAAAAGACCATTTCTACGTTTCCAAGAAAGCACGTACTTCGGAATCAA TTCGACTAACCGCCAATGTCGTTTCCGGAGAAAAATGGAAAACATTTGCTGAACTCAAGGAATTA CTAGGAAAGTAAGTTGTTGGGGTATCATTCCAAAAAGTGTCACTGTTTGCGATTATGAAATATTT ATATTTGATTGAAATATAATAATTGACGTAAAATGATAAAACGTTGTCTTTCATTCACAAAGTCT TAACTGCTGCAATTTCCCAGAAAAATAATGTTTCGAATATGTTTTCAGAGTAAAACAGTGTTTTC TTCAAATTAATCACTTTCCTCCTTTTTTCTCTATACCTATGAAATTACTGTTTTCAACAGGAACC AAGACATGAATTTGGTTTTAATGAATTCTGAAATTGTGTTTTGAG Right flanking sequence: Indices 3756011 -- 3756510 AAGCGGTTAAAAATAATTCAGGCAAATTACTTTTTTTTTACTAATTCCAATACTTAAGAACGGAT TTGCAATAAATACAGAAAAGGAAAATAAGTGCCTAAAACTACTTTAAAAGTGTATCACGATGTTT TGATGTACGAATTTAAACCTAAAATCTAAACCTCAAAGTTGATTGCACTACGTGTCTTAATAAAA TCTTAAAAAAACATTTTTATAGCCAACTTCGTGACGCTAACCAATCGAAACAAGATTCCTATCCA AGAGGAGAATGTAACACCCCAGAGAAAAGAAATGAAAAAAACAATAATTTCGAGAGACAACAACC ACGAAAATCGTTGCAAGATCAGCATTGGAATGTTCCTTTTGAATTCGAGAGAGACCCGAACAACC AAACAGGCCGAGAAAGAGAAGATTCATCCACTGACCAGTTTTGGATGAGCGTTACAACTCCAAAA AACTTTACATACACCGTAAGCTTCTTTCAAAAATATAGTCACCGG Found at i:3756647 original size:7 final size:7 Alignment explanation
Indices: 3756635--3756648 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3756625 AGTTTATTTG 3756635 CAAAAAT 1 CAAAAAT 3756642 CAAAAAT 1 CAAAAAT 3756649 GTTTCGTACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): CAAAAAT Left flanking sequence: Indices 3756135 -- 3756634 ATGTTTTGATGTACGAATTTAAACCTAAAATCTAAACCTCAAAGTTGATTGCACTACGTGTCTTA ATAAAATCTTAAAAAAACATTTTTATAGCCAACTTCGTGACGCTAACCAATCGAAACAAGATTCC TATCCAAGAGGAGAATGTAACACCCCAGAGAAAAGAAATGAAAAAAACAATAATTTCGAGAGACA ACAACCACGAAAATCGTTGCAAGATCAGCATTGGAATGTTCCTTTTGAATTCGAGAGAGACCCGA ACAACCAAACAGGCCGAGAAAGAGAAGATTCATCCACTGACCAGTTTTGGATGAGCGTTACAACT CCAAAAAACTTTACATACACCGTAAGCTTCTTTCAAAAATATAGTCACCGGAGGGTTCAAGAGCT TATTTAAGAATTGACAGGTAAGCGCGCTAGCCCAACTTGAGCAAAGGCTTGCAGCACTAATAGAG AATATACGGTAACTAACCGACAATGTTTGGACGTCAGTTTATTTG Right flanking sequence: Indices 3756649 -- 3757148 GTTTCGTACATACATATAAACCATTGTTTTATGAAAAAAAGTTTTCAGAAATTACAAGATTGTTT TGAGCATTATCCATGAAAATTCATTATGTTTGAATCTAGGGATATAACGAACGTAAAGTTTGCAG ATGGTAGGTCTTGCCAACAATGGACGCGAAGGTTTCCTGCATTCGTTAATCAGACACGGAAGAGA GTTCACGGGCTTTCCATCGAATCGTTTTCACAGAGATATTCTGGATGTAGTTCCACCATCCATAC GCCAATTGATAAAAGAAATTCGGAATTACAGCAACAGAGACAGGAGTAATGAGATAGAAAAAGAG TTACTTTCGGATAGGTCATATCCTGGTAAACACATGTAGTTAGACCGAACTAATTTTTAATATTT CCAGCTACACTGCAACTCCAGAAAAAGTTTCGAGATTACATCCAGAAAATTGTAAACGATGAGAG CAACTTTTTGTACAGACGCCCTAATACAAACGGACAAACTCAAGT Found at i:3758271 original size:10 final size:10 Alignment explanation
Indices: 3758256--3758275 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 3758246 CAAAATTTCT 3758256 GCCTGCCTAC 1 GCCTGCCTAC 3758266 GCCTGCCTAC 1 GCCTGCCTAC 3758276 CTTGTGCCTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.10, C:0.50, G:0.20, T:0.20 Consensus pattern (10 bp): GCCTGCCTAC Left flanking sequence: Indices 3757756 -- 3758255 TGAAAAATCTTGAGCTCACACATTTTGGAATTGAAAAATGTCAACGGTTGACCAGTTTTCTGCTC AAATTGGAGGAGCCTCAATGATAATTGTAAGTTTGCAGGCACAAAAACGCCTACTCACCTGCCTA CCGTTAGGCAATATAGGCATCCTTGTGCATTCAATTAAAATTAGTACGTTTTGAATTTTACACTA ATTTAGGCCTCCATAATCGGACTATTCTTCAATTTATCCGCATTTCGAAAATATTTATCACTTGA AAAAACCAGCTTCCATGTGATGTGCATTTCGAAAACTGTTTCAAATTCTCTACATATTTTGGTTT ATTTATTGTACAATGGCCCATCAGCATTGTTGTGAGTTTAAGAAAAAGTTGGAACAAAATTTCAT TTTGCTTTTAAAGATATGCCCAACTGGGACCCGAATTGCTGAATAGGTATCTTAACCAGGCAATT GCTTATGGTCTATATTGTCAAGGTGAGTTTTGGGGCAAAATTTCT Right flanking sequence: Indices 3758276 -- 3758775 CTTGTGCCTACTACCCTGTGAACCTCTTAAAAAAACTTGGGCATTGTGAAACACTTGGCAATCGT TGACCAAACTTCGCGCCAAAAACCAATCATAAATATGGTAGGCATGCACATAGGCAGTCAGGTAG GCAGAAAGGCAGGAATGATGTAGGCACCTACTCCTAACACCATCTACCCTTTAGGACCCTTAACC CAGGCGCTTATTACTATCAATCGCTTCCTGATTGTCTACTTCGCCCCAATTGTCATCCCCTGGTA TAGTAAATGGATCACTTTTGGCTCACTTTCGGCTTGTTGGATTATTGCCGCATACTTTTCTACAT TGATAGGGTTTCCAGGTACCCAGCTTCATCTTTTTCTCATTTTCCTAACTCTCAAAATTTTCAGA ATCCTGCCTTATCCGATTCAGCCATCAAAGCCTTACCTGGATGCACGATGAATGCCCATATTTTA TACATTACATCTTGCAAAGTGATTTTCTATTCCTAGTACTTCCAC Found at i:3761088 original size:10 final size:10 Alignment explanation
Indices: 3761064--3761091 Score: 35 Period size: 10 Copynumber: 2.8 Consensus size: 10 3761054 TGAGAACACG * 3761064 AAATTTTGGA 1 AAATTTTCGA * * 3761074 CAATTTTCTA 1 AAATTTTCGA 3761084 AAATTTTC 1 AAATTTTC 3761092 AGTATATATC Statistics Matches: 14, Mismatches: 4, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46 Consensus pattern (10 bp): AAATTTTCGA Left flanking sequence: Indices 3760564 -- 3761063 TGCGTAAAACATCCTATCGTCTTTTGACAGAACAGGCACTCCCGAGCCTGAAAATCGAGATTTTG GTGGCCTATGCCTACGTAGGCCGTCTTCAAAGCAAGCCAGGCTAAAATAAAACATTCTCACTTTC AACGATTTCCTCACACTTCATGATTCTCTCTATATGCTGTCCAGATTGCAGATACTTGAAGAAAT AATCTTTCTGAATTTTTTTCTGATTTTTAACGTGAAATTTAATTACCTCAAGAAGTCTCCGATGG ATCCGTTTCTTGATGTTCACTGCGTTTTGGTCGTACGTCATTTTTGCATCTCTCTAAAAAAATTT ATAGTTTTCAGCGGCGAGCAACAAAGTCCTACTAACCTGCTCGAACTTCTTATAGATCGCCTCCA CTCGATCCTCAGATCTTTTGTAATGATCATTCATAGCATTCGTAAAAATTATGCTCCGTTTCATA ACTGGATCACAATCCGGGAGCAAAAAACCTTCTCCTGAGAACACG Right flanking sequence: Indices 3761092 -- 3761591 AGTATATATCTTTTCAAATTTTAGACATTTGTTAAAAATACCAGCTGCTCAAACTCCTCGTGTGA TGGCTCCAAGTTAAAATAGTGAACCTTGTTTTGTCCAAAGTCAGAAGCTTTCGGTTGGGGCTCGG CGAGCTCGAAATTTGGGCATCGAACTTTGCTCGGCGGCTCTCTGGCTTCTAGGTCAGTTGGCACT AATTCTGGAACTAGTTGGAGAGGTAGAGACTGGAAAAAAAATGAATTTTATCAGGAAAAAACTAT ATACTCACCGGAAAAATTGAGTTGGGTGGGTAGGTGAGCAGGATTTGCGGGTTCGGATGAGCCGG CAAATTTAAGAATTGTGTGGGCGGGTGATTGTTGACCAGGTAGGAGTAAGTGGTGTTGAAGTCGG GGAGCTGGAAGTTATGAACTTTGTTTTGGAATAAAAGAAATGAAACTCACCGTCGGATCTAAGTT TGGGAGAATGGAAGATATTTCCGGGAGAATCGGATTTTCTAGGAG Found at i:3762816 original size:6 final size:7 Alignment explanation
Indices: 3762800--3762817 Score: 29 Period size: 6 Copynumber: 2.7 Consensus size: 7 3762790 ACATCAAACT 3762800 ATGTCGG 1 ATGTCGG 3762807 ATGT-GG 1 ATGTCGG 3762813 ATGTC 1 ATGTC 3762818 ACTATTTACA Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 6 6 0.60 7 4 0.40 ACGTcount: A:0.17, C:0.11, G:0.39, T:0.33 Consensus pattern (7 bp): ATGTCGG Left flanking sequence: Indices 3762300 -- 3762799 GTTTAGCGGCATCCTGTGGGGTCTCTCCTTCTTCAATCCATTGGGCATGCCTGTGGTTGTTATTG TAGAGGACCCACTTCTCGTCTCCAGTGAAAAGTGGGTCCAACCATCAATCGCCCCCGTGGAGAAT GAGGAGGGAAAGGGAACCATCCATTCAAAACTCAAGGTTGGCTTGTGTCAAGGTGTGAGGTATGA ATCCACCCCTAATTGTCTTTATTCCGGGAGCTACCAAGCCCTGTACGATGTTGGTTTGATAAGAC CCAAGTGCGGTTGACAGCTCACGGGTTGTTTGGAAAGGATTCGTTTACACGGCTTTCTTCAACGC ATCCAAATCCAATTTATGGGGTCTCTTGGTCCTCAAGAGAAAAGTCGTCCTTGTCGAAGCGGTGG AACCAATTGTGTATGATATTATAGTGATGGACATGTGTATGATGAACATTCTCAAGGAGACTCTC GAAATCCTTCATCGTGGTATGAAATAGGAAGAAGTACATCAAACT Right flanking sequence: Indices 3762818 -- 3763317 ACTATTTACATACATCGTCGGCTAACTAAACTCAGGTCAGAGGGAAGGGAATGGGGTGTTTTTTA AAATTAAGTTCCTTTACTCGTTGTTATACCCTAGCAACAAGGGAACACCAAAGTGCAACTGCGGC TAGCGGTGGATAAGCAAACCCAGTCACAAAGACTTCCGGTTCAACCTAATAGAACTACACTATAA CATGTTCTAAACTTTTGACGATCCATTTCCAACTGCTTCCTTGCAGTGCACTTACCACCATATCC TCGTTTTCCACAAAGTCTTTTAGCTGCTTTTTCTCAAGTTTTTCTTCTATTTTCTTTGAGGAAAC CCACTGATTTCTATTAATATCCACAGAAGAAAATTGAAATTCAATATTTAACTGAAAGTTTAAAA TAAAAAAGTATAGTTTTGATACTGCTAAACACTAAACAGAAACTTTGAACGCAAAAGTGTAAAAA TGCGAGTTGTTGCCATGCGGAGTTTGGAGGTGGACGGGGGCTAAT Found at i:3763244 original size:7 final size:7 Alignment explanation
Indices: 3763232--3763245 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3763222 TTTGATACTG 3763232 CTAAACA 1 CTAAACA 3763239 CTAAACA 1 CTAAACA 3763246 GAAACTTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14 Consensus pattern (7 bp): CTAAACA Left flanking sequence: Indices 3762732 -- 3763231 TGAACATTCTCAAGGAGACTCTCGAAATCCTTCATCGTGGTATGAAATAGGAAGAAGTACATCAA ACTATGTCGGATGTGGATGTCACTATTTACATACATCGTCGGCTAACTAAACTCAGGTCAGAGGG AAGGGAATGGGGTGTTTTTTAAAATTAAGTTCCTTTACTCGTTGTTATACCCTAGCAACAAGGGA ACACCAAAGTGCAACTGCGGCTAGCGGTGGATAAGCAAACCCAGTCACAAAGACTTCCGGTTCAA CCTAATAGAACTACACTATAACATGTTCTAAACTTTTGACGATCCATTTCCAACTGCTTCCTTGC AGTGCACTTACCACCATATCCTCGTTTTCCACAAAGTCTTTTAGCTGCTTTTTCTCAAGTTTTTC TTCTATTTTCTTTGAGGAAACCCACTGATTTCTATTAATATCCACAGAAGAAAATTGAAATTCAA TATTTAACTGAAAGTTTAAAATAAAAAAGTATAGTTTTGATACTG Right flanking sequence: Indices 3763246 -- 3763745 GAAACTTTGAACGCAAAAGTGTAAAAATGCGAGTTGTTGCCATGCGGAGTTTGGAGGTGGACGGG GGCTAATTATATGCTCCAAATGTGCACTAATCACACCTCTTTTACGAGTTGTCTGATTATATATA TTTTGGGTGAATATAAGAAAGTAGGAGAAAATTCATTCATTTTGGGAATTCGGTGAAGTTTTAAG TTAATTGAGACGTTTTGCTGATACAACATTTAAATTTACGCCCGCTGGTTGTATTTTCAAATGTT TGTAGTTGAACCAATATAAGACAAATCTGAAAAAAAAATGTTGGTAGGGCGCAAGAAAAGCGTCT GAAATAGCCCCCAACTTACCCATCAACTCCAAAAACTACTACATCTACACTCATCGAGATGAGCA TTATACAAGACTGATTTTCGCAATATTTAGTGGAAGCCGCATTATTTGCAGCGTCAACTGCTGAA ATCCAATCTTGAATACACGATTGAAAGAAAAACTTGATAGATCTC Found at i:3764200 original size:8 final size:8 Alignment explanation
Indices: 3764187--3764208 Score: 44 Period size: 8 Copynumber: 2.8 Consensus size: 8 3764177 TTAATGCAAA 3764187 GCCTACGT 1 GCCTACGT 3764195 GCCTACGT 1 GCCTACGT 3764203 GCCTAC 1 GCCTAC 3764209 CTTGAAGCAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.14, C:0.41, G:0.23, T:0.23 Consensus pattern (8 bp): GCCTACGT Left flanking sequence: Indices 3763687 -- 3764186 CGTCAACTGCTGAAATCCAATCTTGAATACACGATTGAAAGAAAAACTTGATAGATCTCTTGCGT CTTCTTTGGTAAGCGACGGAGGAAATAGATTTTTGAGTTCTCTGCAAACTTTTTTTGCATTTTTT TTGTATTCTCAAAATTCAGTTGAAATCACCGATACCACTACCAACTTGACAGCCATCATTAGATT CAAAAAATTTGTCACTGCCGCTAAACTGAAGACCACATAATTTTTTATCCAAAACATAGTTGTAC TACAGGAAGCGGTGGTGTAAAACGTGTGCTCAAAAAATGCGAATGGTGATTTGCAGTCCTCGGGG AGCCCGAATAACGTGGATTGCCAGCCGACAAATATCCAGGTTAAAATTATTATAACAGTTGTCAG ATATCGACTAGATTTTGGAATTTGTAAAGGTAAAAACCATAGCACCAAAACGCGATTGATAGTTA TTATTAGTTGGGTTATTGGACCTGAAATAAATACTTTAATGCAAA Right flanking sequence: Indices 3764209 -- 3764708 CTTGAAGCATAAGCCCGTACATTGCGAAATGGTGAAGAAGAATATTCAGCTCAATAGATCCAATT TGAGTATACCTGTAAGAAAAATTACGAAAATAAAAAAAAACGTTTTACAACTTACAATAAATGAA CTGGTCCGGTATAAACTAAATAAACCAGCAAAATTAACGAATTCGATAATGTTTTCGAAACGCAA AGCAGATGGAAACTAGTCTTTTCCAGTGTTAAAAAATGGAAAAGCATGAAGAAATTTATCAGAAA CCCGACGAATGATACCTGAGAGTTAATTTGAACTTTTAGAGCCATAAGTTTAAAACCTTACAAAA ATCATCTCGGCTCCAACAATTCGGGTGGAAAATTCCGTGGAATTCATTTTGTTGAATGAAAAAAA ACAACAAAAATTAATTATAACAAGAATGTTTTTTCTGAAAAACGACTGCCTGGGAAAGTGTAGAC TTTGACAAAAAAAAATGGCGTAGACTGAATAATTACTTGGTTTTT Found at i:3765133 original size:7 final size:7 Alignment explanation
Indices: 3765116--3765140 Score: 36 Period size: 7 Copynumber: 3.7 Consensus size: 7 3765106 ATTCAGATAG 3765116 AAAAAGT 1 AAAAAGT 3765123 -AAAAGT 1 AAAAAGT 3765129 AAAAAGT 1 AAAAAGT * 3765136 ATAAA 1 AAAAA 3765141 CAAAAAAACA Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 6 6 0.38 7 10 0.62 ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16 Consensus pattern (7 bp): AAAAAGT Left flanking sequence: Indices 3764616 -- 3765115 TAACAAGAATGTTTTTTCTGAAAAACGACTGCCTGGGAAAGTGTAGACTTTGACAAAAAAAAATG GCGTAGACTGAATAATTACTTGGTTTTTGCTGAATAGGAATTACACATTTTAGTATATAGAATCG TTTAAGCTTCTACACTTTCTGCTCTTGAAGACCTTTCGTGACGTCGCATGAGCTGTAAAAATGAA TTGAAAGCTAAAGTTCTGCAAAATGAAGGCTTCGCCGACGAATTTATATTGCATAGATCGGATGT AGGTGGTATCAGCTTGGGATATATTTTCCAGCCGAATTTTGTTTTCTGACTTATAGAGGCTGTCT AGGCTATACTTGATGGAATAGCCTGGGGACTATTATCACATGTTTTTATACCAATATAAAGTAAT TACTCATTGCCAGCTATCACCCGCTGTGAAAACTAGAGCTTTAAAACAAAAATCAGTTTATTAAA AATGTTTTAATAAAAACGATCTAAACTATAATACAATTCAGATAG Right flanking sequence: Indices 3765141 -- 3765640 CAAAAAAACAAAAACATTCTCTAAAAAATAGAGGTAGTTCAGCGGGGAATTTTCTTTGTTTTGAA CCCGTTATTTAGAAGAAAAAAAAACAGAAAAACAAACAGAAAAACAAATACAAAACAAACAAACA TAATCAATTACTATTTAATTTTTTTTTTTGCCACCCGGTTGCTGGTGCTTCTCTTCATCAATTCT TACATAACCCTTTTTAATTTGACTCATAAACTCTTCATTTAAAATTTCTCGCATACGATTCCAAG CCTTGAATTTAGCGCCATTTTCCCTTTTGATCGCGTCCCATTCAGGTACTGGAAATTGAAATTTG AAAAATTTGGCGGAAAATTTCAATTTTAATTTTTGAAATATTCTTACCAGAAATTATTTTTTGAA AAAAATTTTGATTTGTACAAATACTTCACTAAATTTAACTTTCCCTAAATAAAATCAAATTTTCC ACTTACTCTGCTCCCCCTCCACAAATCGTTTTTTACTAATGTAAC Found at i:3765153 original size:7 final size:8 Alignment explanation
Indices: 3765138--3765154 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 3765128 TAAAAAGTAT 3765138 AAACAAAA 1 AAACAAAA 3765146 AAACAAAA 1 AAACAAAA 3765154 A 1 A 3765155 CATTCTCTAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00 Consensus pattern (8 bp): AAACAAAA Left flanking sequence: Indices 3764638 -- 3765137 AAACGACTGCCTGGGAAAGTGTAGACTTTGACAAAAAAAAATGGCGTAGACTGAATAATTACTTG GTTTTTGCTGAATAGGAATTACACATTTTAGTATATAGAATCGTTTAAGCTTCTACACTTTCTGC TCTTGAAGACCTTTCGTGACGTCGCATGAGCTGTAAAAATGAATTGAAAGCTAAAGTTCTGCAAA ATGAAGGCTTCGCCGACGAATTTATATTGCATAGATCGGATGTAGGTGGTATCAGCTTGGGATAT ATTTTCCAGCCGAATTTTGTTTTCTGACTTATAGAGGCTGTCTAGGCTATACTTGATGGAATAGC CTGGGGACTATTATCACATGTTTTTATACCAATATAAAGTAATTACTCATTGCCAGCTATCACCC GCTGTGAAAACTAGAGCTTTAAAACAAAAATCAGTTTATTAAAAATGTTTTAATAAAAACGATCT AAACTATAATACAATTCAGATAGAAAAAGTAAAAGTAAAAAGTAT Right flanking sequence: Indices 3765155 -- 3765654 CATTCTCTAAAAAATAGAGGTAGTTCAGCGGGGAATTTTCTTTGTTTTGAACCCGTTATTTAGAA GAAAAAAAAACAGAAAAACAAACAGAAAAACAAATACAAAACAAACAAACATAATCAATTACTAT TTAATTTTTTTTTTTGCCACCCGGTTGCTGGTGCTTCTCTTCATCAATTCTTACATAACCCTTTT TAATTTGACTCATAAACTCTTCATTTAAAATTTCTCGCATACGATTCCAAGCCTTGAATTTAGCG CCATTTTCCCTTTTGATCGCGTCCCATTCAGGTACTGGAAATTGAAATTTGAAAAATTTGGCGGA AAATTTCAATTTTAATTTTTGAAATATTCTTACCAGAAATTATTTTTTGAAAAAAATTTTGATTT GTACAAATACTTCACTAAATTTAACTTTCCCTAAATAAAATCAAATTTTCCACTTACTCTGCTCC CCCTCCACAAATCGTTTTTTACTAATGTAACTAGTAAAAAGAGTG Found at i:3765463 original size:6 final size:7 Alignment explanation
Indices: 3765452--3765468 Score: 27 Period size: 7 Copynumber: 2.6 Consensus size: 7 3765442 TCAGGTACTG 3765452 GAAA-TT 1 GAAATTT 3765458 GAAATTT 1 GAAATTT 3765465 GAAA 1 GAAA 3765469 AATTTGGCGG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 6 4 0.40 7 6 0.60 ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29 Consensus pattern (7 bp): GAAATTT Left flanking sequence: Indices 3764952 -- 3765451 GATGGAATAGCCTGGGGACTATTATCACATGTTTTTATACCAATATAAAGTAATTACTCATTGCC AGCTATCACCCGCTGTGAAAACTAGAGCTTTAAAACAAAAATCAGTTTATTAAAAATGTTTTAAT AAAAACGATCTAAACTATAATACAATTCAGATAGAAAAAGTAAAAGTAAAAAGTATAAACAAAAA AACAAAAACATTCTCTAAAAAATAGAGGTAGTTCAGCGGGGAATTTTCTTTGTTTTGAACCCGTT ATTTAGAAGAAAAAAAAACAGAAAAACAAACAGAAAAACAAATACAAAACAAACAAACATAATCA ATTACTATTTAATTTTTTTTTTTGCCACCCGGTTGCTGGTGCTTCTCTTCATCAATTCTTACATA ACCCTTTTTAATTTGACTCATAAACTCTTCATTTAAAATTTCTCGCATACGATTCCAAGCCTTGA ATTTAGCGCCATTTTCCCTTTTGATCGCGTCCCATTCAGGTACTG Right flanking sequence: Indices 3765469 -- 3765968 AATTTGGCGGAAAATTTCAATTTTAATTTTTGAAATATTCTTACCAGAAATTATTTTTTGAAAAA AATTTTGATTTGTACAAATACTTCACTAAATTTAACTTTCCCTAAATAAAATCAAATTTTCCACT TACTCTGCTCCCCCTCCACAAATCGTTTTTTACTAATGTAACTAGTAAAAAGAGTGAACGCATTA CAGGGGCACCTAACCAATTGCGGAAGCGGCTGTTCTGACGTGGGACTGAAGAGGCAAGTATGGAT GGCTGAAAATATTATTTTATCGACTACAAGTTCTATGAAATCTTACTAATAAACGGGTTGTTGTT GGCATCACAGGTGGCGTGATTGGCCAACGCTTCAGCATATCTTTGGTTATACTCCAGAGTCCCTG GAGTCAATGGATGTGGTCCGTTTGGAAGGTTCTTCTTTCTTTTAGCTTTGACAGGTGAAGTTTTG CTTTGACCTGAACCAAAAGTTTATAATAGGTGTTCAGAAGCTTAA i:3769348 original size:7 final size:7 Alignment explanation
Indices: 3769332--3769348 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 3769322 TTGGTTTTTG * 3769332 TTTTCTT 1 TTTTCGT 3769339 TTTTCGT 1 TTTTCGT 3769346 TTT 1 TTT 3769349 CTTTGCAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82 Consensus pattern (7 bp): TTTTCGT Left flanking sequence: Indices 3768832 -- 3769331 CATTTGCAAGAAACGCTTTAACGGGAGCAACTGATTGAGTTGAGAGGTGGTGAGCTTCTTCATCT ATATCATATTGATTTTCTGGTGACTGAGAGGTTTCCTGCTGCTCTATTGGCGCATCATGGCTAGC TGGAGAAGATGAGAATTGGCGATCTTCTTGAACTTCCACAACAATCTCACAAAGTGCTTCGTCAC TTGCAAGAGATGCTTCATCTGAATTTACTTTAATAATTTTAATTATAAATTTTTCAAATATTTGT TATTAATCTTCTAACTACAGTGCTCCACATAATGATACGGCCACCCCCAAATTTTGGTATAACTC AAAACTGGGTTGAGATAGCAAAACATAGTTTCTTGTGAAAATGTTCGCTATACTAACTTGCTTTC AGATAAATATTGGAAATATACCTGAACCGTTCGTAAAAAAGATAAACCATTTTTTCATGAAAAAC CATATTAAAAAATCCACAAAATGATACGGCCACCCTTGGTTTTTG Right flanking sequence: Indices 3769349 -- 3769848 CTTTGCAATTTTTTTTGCTAAACGTTAAGTTTCATGTTCGTTTGTGTTTTTACAGCTATGTGGTC GTGGAATAACTTCAACTGACTACGAAAAAGGACAAATTGTGCCAAATTATCTCAAGGCTTCTCGA ATCGTCAGATTTTTCGTGATTTGAAACTTTCGAGAGATATGATCACTCGATATGCTTCCAATCCT GCCGCTTATTGCACAAAAAAGTCTTCTGGTCGCACACCTTTTCTTTCTGTCAGACCCAAGCGAAA AATCGTTCGTCGTACATCCAATTGAACAGTGACTTGCTCGAAAAGTAGGAGCGAGATGAACCTGG CAGTGTCTGTTGAGGCCGTACGACATGTTCTTTTGAAGTCTCAGTTTAACAAAAGACGAAAATTA AGAAAGGCTCCATTCATTACCAAAAAAACCGCCAAAACCGTATTCAGTTTGCTAAAATCAGTCAG GGAACTAACTGAAGACAAGAGAGGATTACGGTATAATCATTCAAG Found at i:3770489 original size:7 final size:7 Alignment explanation
Indices: 3770470--3770490 Score: 28 Period size: 7 Copynumber: 3.1 Consensus size: 7 3770460 AAAAAATTGC 3770470 AAAG-AA 1 AAAGAAA * 3770476 AACGAAA 1 AAAGAAA 3770483 AAAGAAA 1 AAAGAAA 3770490 A 1 A 3770491 CAAAAACCAA Statistics Matches: 12, Mismatches: 2, Indels: 1 0.80 0.13 0.07 Matches are distributed among these distances: 6 3 0.25 7 9 0.75 ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00 Consensus pattern (7 bp): AAAGAAA Left flanking sequence: Indices 3769970 -- 3770469 TGGGCTTGAATGATTATACCGTAATCCTCTCTTGTCTTCAGTTAGTTCCCTGACTGATTTTAGCA AACTGAATACGGTTTTGGCGGTTTTTTTGGTAATGAATGGAGCCTTTCTTAATTTTCGTCTTTTG TTAAACTGAGACTTCAAAAGAACATGTCGTACGGCCTCAACAGACACTGCCAGGTTCATCTCGCT CCTACTTTTCGAGCAAGTCACTGTTCAATTGGATGTACGACGAACGATTTTTCGCTTGGGTCTGA CAGAAAGAAAAGATGTGCGACCAGAAGACTTTTTTGTGCAATAAGCGGCAGGATTGGAAGCATAT CGAGTGATCATATCTCTCGAAAGTTTCAAATCACGAAAAATCTGACGATTCGAGAAGCCTTGAGA TAATTTGGCACAATTTGTCCTTTTTCGTAGTCAGTTGAAGTTATTCCACGACCACATAGCTGTAA AAACACAAACGAACATGAAACTTAACGTTTAGCAAAAAAAATTGC Right flanking sequence: Indices 3770491 -- 3770990 CAAAAACCAAGGGTGGCCGTATCATTTTGTGGATTTTTTAATATGGTTTTTCATGAAAAAATGGT TTATCTTTTTTACGAACGGTTCAGGTATATTTCCAATATTTATCTGAAAGCAAGTTAGTATAGCG AACATTTTCACAAGAAACTATGTTTTGCTATCTCAACCCAGTTTTGAGTTATACCAAAATTTGGG GGTGGCCGTATCATTATGTGGAGCACTGTATAAGCCATAAACGAATACATCAAAATAAACAATGT TGCTTACAATTAGGAGAAACTGATGGTGCAGCATCTTCAGCTTGAGCTTCTCGAACTTTTGTCGA CTGTGACAGTTCCTTTGGCTTAATTAAGCTGTCACAGAAATCATGACCATCTTCATTTACATAAT CTCGAACCTCTGGTGACTGAGAGGTTTCCAGCGGATCCATGAGTGAATTATAGCCGTCTGGGGAG AAAGATATTTCTTCTGAAAATGAGCGTTTTGATGGGAAAAGTTAC Found at i:3772934 original size:8 final size:8 Alignment explanation
Indices: 3772921--3772936 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3772911 AAGTTATTTG 3772921 TCGGCAAA 1 TCGGCAAA 3772929 TCGGCAAA 1 TCGGCAAA 3772937 CCAGCATTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): TCGGCAAA Left flanking sequence: Indices 3772421 -- 3772920 AAAATTAGGCAATTACTTACACTTATAATTCGGAACTCGGTTGGGTTTCTTCTTCTGTGGGGCTG GTTCTATAGCTGAAATGTTTTTTCCCAGTAAAACATACCCAAGGCATGCTCTAAAAAATAATGTG AAAAGCTTACGTGCATCTAAGATTCCGGACACCTTGAAAAGTTCACCAATCTGAGAAAAATAGAC ATCGAGGCCAGGAAACGTCACCTTTTTGTGTTCCGATTCTGAAATTTACCAGATCTGGTGTACAG TGTAAAAGTACTAAATTTTTGTGAGAATTGTTCTCACCAAGTTCCTCAATATCTGGTTGGTCTTT CAGAATTCAGTTTTTCATCTTAAAAACAACTCACCCAACGACCCTTGATTTGCGTCTTGGCTCAT TTCCTGATTTGGCTCTGCGCCTTGAACTTCAACTGGAGCTTCTGTATTCTGACCTGAAATATTCA GATTACTAATTTTTATTTTAAAATTGTATAGTTTAAAGTTATTTG Right flanking sequence: Indices 3772937 -- 3773436 CCAGCATTTTGCCGATTTTCCAAACGTGTCGACAAAAAATTTTCCCGAACTGTAACCTCAAAAAT CAAAAAACAAACCATGTTCAAATAGTCGATTTTCCTGGGCTGTTCCTTGAACCAGATTGAGATTG AGGTCTCTAGCCGCTGCTGTCGCTGAAAATTTGTCAATAAAAATTTGTAATTTTCCCATTAAAAT AGGTTTACCCAGTTCCACCGGGTCCTGCTCTACCGGATTGTGATTTGGATCCATGCCAAGATCTG AATTTACCAAGTTGGTATCAACTGTTCTGTAAAAAATAAGGATTTTAATTGAGAAAAAATCGAGG AAACGTCGAGAAAAGAAAATAAGAAAATATTTCAGAAAGTCAAAAACATTAGGTGAAACGATTTT CCCACGATAATGTAGAAAAAATCACGAAGAAACTTGCAATAACAAGGGGGTGACGTTAGGGGGAA AGGGTGGGAAATTGTAAGTGTTGAGGGGTGATGGTGGAAGAAAAA Found at i:3773006 original size:7 final size:7 Alignment explanation
Indices: 3772994--3773012 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 3772984 AACTGTAACC 3772994 TCAAAAA 1 TCAAAAA 3773001 TCAAAAA 1 TCAAAAA * 3773008 ACAAA 1 TCAAA 3773013 CCATGTTCAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.74, C:0.16, G:0.00, T:0.11 Consensus pattern (7 bp): TCAAAAA Left flanking sequence: Indices 3772494 -- 3772993 GCTGAAATGTTTTTTCCCAGTAAAACATACCCAAGGCATGCTCTAAAAAATAATGTGAAAAGCTT ACGTGCATCTAAGATTCCGGACACCTTGAAAAGTTCACCAATCTGAGAAAAATAGACATCGAGGC CAGGAAACGTCACCTTTTTGTGTTCCGATTCTGAAATTTACCAGATCTGGTGTACAGTGTAAAAG TACTAAATTTTTGTGAGAATTGTTCTCACCAAGTTCCTCAATATCTGGTTGGTCTTTCAGAATTC AGTTTTTCATCTTAAAAACAACTCACCCAACGACCCTTGATTTGCGTCTTGGCTCATTTCCTGAT TTGGCTCTGCGCCTTGAACTTCAACTGGAGCTTCTGTATTCTGACCTGAAATATTCAGATTACTA ATTTTTATTTTAAAATTGTATAGTTTAAAGTTATTTGTCGGCAAATCGGCAAACCAGCATTTTGC CGATTTTCCAAACGTGTCGACAAAAAATTTTCCCGAACTGTAACC Right flanking sequence: Indices 3773013 -- 3773512 CCATGTTCAAATAGTCGATTTTCCTGGGCTGTTCCTTGAACCAGATTGAGATTGAGGTCTCTAGC CGCTGCTGTCGCTGAAAATTTGTCAATAAAAATTTGTAATTTTCCCATTAAAATAGGTTTACCCA GTTCCACCGGGTCCTGCTCTACCGGATTGTGATTTGGATCCATGCCAAGATCTGAATTTACCAAG TTGGTATCAACTGTTCTGTAAAAAATAAGGATTTTAATTGAGAAAAAATCGAGGAAACGTCGAGA AAAGAAAATAAGAAAATATTTCAGAAAGTCAAAAACATTAGGTGAAACGATTTTCCCACGATAAT GTAGAAAAAATCACGAAGAAACTTGCAATAACAAGGGGGTGACGTTAGGGGGAAAGGGTGGGAAA TTGTAAGTGTTGAGGGGTGATGGTGGAAGAAAAAATGAATAAAAACAAATTTGCTGTAGCAGTTG AAAATTTTACAAAAAAAAACGGGGGTTTATTTTATTTTTTTTTTT Found at i:3773287 original size:8 final size:8 Alignment explanation
Indices: 3773274--3773290 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 3773264 ACGTCGAGAA 3773274 AAGAAAAT 1 AAGAAAAT 3773282 AAGAAAAT 1 AAGAAAAT 3773290 A 1 A 3773291 TTTCAGAAAG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12 Consensus pattern (8 bp): AAGAAAAT Left flanking sequence: Indices 3772774 -- 3773273 ACTCACCCAACGACCCTTGATTTGCGTCTTGGCTCATTTCCTGATTTGGCTCTGCGCCTTGAACT TCAACTGGAGCTTCTGTATTCTGACCTGAAATATTCAGATTACTAATTTTTATTTTAAAATTGTA TAGTTTAAAGTTATTTGTCGGCAAATCGGCAAACCAGCATTTTGCCGATTTTCCAAACGTGTCGA CAAAAAATTTTCCCGAACTGTAACCTCAAAAATCAAAAAACAAACCATGTTCAAATAGTCGATTT TCCTGGGCTGTTCCTTGAACCAGATTGAGATTGAGGTCTCTAGCCGCTGCTGTCGCTGAAAATTT GTCAATAAAAATTTGTAATTTTCCCATTAAAATAGGTTTACCCAGTTCCACCGGGTCCTGCTCTA CCGGATTGTGATTTGGATCCATGCCAAGATCTGAATTTACCAAGTTGGTATCAACTGTTCTGTAA AAAATAAGGATTTTAATTGAGAAAAAATCGAGGAAACGTCGAGAA Right flanking sequence: Indices 3773291 -- 3773790 TTTCAGAAAGTCAAAAACATTAGGTGAAACGATTTTCCCACGATAATGTAGAAAAAATCACGAAG AAACTTGCAATAACAAGGGGGTGACGTTAGGGGGAAAGGGTGGGAAATTGTAAGTGTTGAGGGGT GATGGTGGAAGAAAAAATGAATAAAAACAAATTTGCTGTAGCAGTTGAAAATTTTACAAAAAAAA ACGGGGGTTTATTTTATTTTTTTTTTTATTTCAATACGATATGTTTTGAATCAATAATATGTAAT GAGTCATCTAATTTTGGATAACATGTTTTCGATATTTTACTGTAAAAAAACATTTTGGAAATTGG AAAGTTTGAGAAAAATCACGTAGGCAATTTACATAGATTTGGAGAAAAAGTTTCTACGAAAAATG CGTAAAAACTGTAGCATAATGGCTCCTCGTTTCTACATTTTATGTCTTATTATTCAATTGTATAA TGTGGGAAACTTGCGGGAAGAGTGGTAGCAAAGTGTGGGAGCGAA Found at i:3773617 original size:7 final size:7 Alignment explanation
Indices: 3773605--3773618 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3773595 AAAAAACATT 3773605 TTGGAAA 1 TTGGAAA 3773612 TTGGAAA 1 TTGGAAA 3773619 GTTTGAGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): TTGGAAA Left flanking sequence: Indices 3773105 -- 3773604 AAAAATTTGTAATTTTCCCATTAAAATAGGTTTACCCAGTTCCACCGGGTCCTGCTCTACCGGAT TGTGATTTGGATCCATGCCAAGATCTGAATTTACCAAGTTGGTATCAACTGTTCTGTAAAAAATA AGGATTTTAATTGAGAAAAAATCGAGGAAACGTCGAGAAAAGAAAATAAGAAAATATTTCAGAAA GTCAAAAACATTAGGTGAAACGATTTTCCCACGATAATGTAGAAAAAATCACGAAGAAACTTGCA ATAACAAGGGGGTGACGTTAGGGGGAAAGGGTGGGAAATTGTAAGTGTTGAGGGGTGATGGTGGA AGAAAAAATGAATAAAAACAAATTTGCTGTAGCAGTTGAAAATTTTACAAAAAAAAACGGGGGTT TATTTTATTTTTTTTTTTATTTCAATACGATATGTTTTGAATCAATAATATGTAATGAGTCATCT AATTTTGGATAACATGTTTTCGATATTTTACTGTAAAAAAACATT Right flanking sequence: Indices 3773619 -- 3774118 GTTTGAGAAAAATCACGTAGGCAATTTACATAGATTTGGAGAAAAAGTTTCTACGAAAAATGCGT AAAAACTGTAGCATAATGGCTCCTCGTTTCTACATTTTATGTCTTATTATTCAATTGTATAATGT GGGAAACTTGCGGGAAGAGTGGTAGCAAAGTGTGGGAGCGAATGAGGGGAACAAAGAAAAAAAAG TGTACAGTGTTATGGGGAAATTTTATATGGGTTATAACGGGACCATGAGATCATGAGAATGCCTA TTTACTGGCGCGAAAATATTGGCAGGCCATGGCAGCGAGAGAGCATAAGAGAGACGCAGGTCCCT TCGCTACGAGATATTTGTCGCCAGAAAAGTAGGCATTCTCATGATCTCATGTCCCGTAATATTTA TTTGCTTTTACAAAATGTCTTTCTCATACCAAATCTGCCAAATATCCTGAAATAATATTATCACT ATGTGCAACTAAAAAAATATAATACATAGCGTGCAACAACACAGC Found at i:3774773 original size:7 final size:7 Alignment explanation
Indices: 3774761--3774775 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 3774751 AAAAGTTGTT 3774761 ATTTTTA 1 ATTTTTA 3774768 ATTTTTA 1 ATTTTTA 3774775 A 1 A 3774776 ATGTAAAACC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (7 bp): ATTTTTA Left flanking sequence: Indices 3774261 -- 3774760 TGAGCTTGAAACTGGAAAATTCGGTATACTTATTTCAAAAAAAAATATATTGTCTTGGTACTTTT CAGGGAAAGAGATAAGAAACAAACAATTTTTTTTCGAATTCTCTGTTATTGCATACTATTTATAA AAATATTTTGGTTTCCGAAAAAAAGAAAACTTTCTTGGAGCTGTAGTAGAAGCGGCGGAGCAAAA GAAAAGGCAGCTGGTGGTCACTGTTTAATGGTCTGTCAGTCGAAGCAAAAGTATAAACAATTAGG GCCTCACAACGATACGGTACATTTCTCAAAAGTCTACTACTAGATGAAAATGTTTTTCGGAACTT TAATATTTTTTTTAATTGACAGGGTTTTTAGCTGTTTTGGTAATCATGAAAAAGGTATGGAATTG CAAAAAAATTAGAATTTGCAAAAAAAATTTAGTGAACAGTTTTGGAACATTGCCAAATTTTTTTT TGAAATGCAGGTTTGAAATTGAAATGGATTTTGCTAAAAGTTGTT Right flanking sequence: Indices 3774776 -- 3775275 ATGTAAAACCAAGTTAATTTCTTAAAACAAAACTAACAATTGCTCTTCAAATAGAGGTACTCCTT TGTCACCTAACAATTCGGAACCCTTTTTAAGTCCACCGCCAAAAAAAAACCATACCACACATCTG CCAGCACTGCGTCCGTCCTTGTTGAATACGAGACAACAGACATGTTTTCAAACCATAACAATACT TGGCAGGGTGCCAAGTAACCTTGGATTTAAGCTTTTTCGGAACTTGCTTCAACTTTTTAGATAAA AATACAGGAACCTACTGAATGGATTTGGATATCAAAAACTATTTCAAAAAAAATTTTGAGTTTGC AAGACCCTAAAGCTTTAAATTTCAGAAAACCTGGGTGCCGGATCTGTGAACTCCAGCTGTCAAAT TTACCATATATGCCAATAGTGAACCAATAGTATATGCCAATATATTAGGTAGTTGACAATTTACT AGGTCTAGCAAGTTGTAAAGTAACGATCAAAAATTATTGTGGCCT Found at i:3777302 original size:7 final size:7 Alignment explanation
Indices: 3777290--3777303 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3777280 GAAGATCAAG 3777290 AAAAAAT 1 AAAAAAT 3777297 AAAAAAT 1 AAAAAAT 3777304 GACAAAGAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAAAAT Left flanking sequence: Indices 3776790 -- 3777289 CAATCAATCTATAGATTTCCAGAATCTCGATTAAAGCCAGCTCCTGAACCTGAGCTCAGTCCGGC ATATACAGAAGCTTCAGCAATTTCGGGTGCCTATTCAGAAACCGCCCGGCTTCCCACTACTTCCA CAACTATAAAAAGGTCCAGGAAAAGGAAAGATCCAAGAAAAATCGTTCCGGATTCCATTGTCAAA ACTCAAAAACGCTGTATGTAAATCAAAGTGATTAAAATTTCAAATTTTCATAACTTGAGTTAACT GACATAATTTCTTTTCAGCTCCCCGAAAAGCTCCCAGTTTCGATGTATGCGGGATGAGCTCATCG AAAATATTCGATTTATGGTGTGGTGAGGCTTTTTAACCTAGATTATTTTCGAAATATATTTACAC GTTTGAAATGAAAATCATTGAACGTTTTCCAGCTGGCCAAGGATTTGGTTCTATGCAGGAGACAC TGCAGAAGTTTCTTAATAATCAGGAAAAACTTAATGAAGATCAAG Right flanking sequence: Indices 3777304 -- 3777803 GACAAAGAGAGAGGTAGGAAAAGTGAAACAGTTTAAAATGAAATGTTCATATTTTCAGATAGCAT TTCTCAAGTCGAGAATTCAGATGGGTCTAGTGAGAGTGGGCTGGCTGACTATTCACTTTTTCCAC AGCTTCTCCTTCCTCAATAATATCTGTCACTCCTACTTTTAATGTTTCTTTTTCAACGGTGCTCC ATCCAAAAGCTTCACTTCCTCCCACCCAACTCTTCCAAATACTCATCATTTAAAACGTTTTTTTT TTGCTAAAATTTATAAAACCTAGCGATATCCTCCGGCATTTCTGTTAATTATTTCATTTGTCCCT GATACTTCATATCAATTTGGGATGCGTTATATTATTGAAACTATGTATGAAATTATCCAATTTTC AATTTGAAAGTAATACAGTGGACATAACAGTGGCTTCTGATTACAAATGTCTAATAATCAATACT TGCAAATCCCACAATTTAAGTAAGAAATAATTCCCCAAAAATTGC Found at i:3777833 original size:6 final size:7 Alignment explanation
Indices: 3777805--3777837 Score: 38 Period size: 6 Copynumber: 5.0 Consensus size: 7 3777795 AAAAATTGCC 3777805 AAAATAT 1 AAAATAT 3777812 AAAA-AT 1 AAAATAT * * 3777818 AACATCT 1 AAAATAT 3777825 AAAAT-T 1 AAAATAT 3777831 AAAATAT 1 AAAATAT 3777838 CTAGTAGATT Statistics Matches: 21, Mismatches: 3, Indels: 4 0.75 0.11 0.14 Matches are distributed among these distances: 6 11 0.52 7 10 0.48 ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27 Consensus pattern (7 bp): AAAATAT Left flanking sequence: Indices 3777305 -- 3777804 ACAAAGAGAGAGGTAGGAAAAGTGAAACAGTTTAAAATGAAATGTTCATATTTTCAGATAGCATT TCTCAAGTCGAGAATTCAGATGGGTCTAGTGAGAGTGGGCTGGCTGACTATTCACTTTTTCCACA GCTTCTCCTTCCTCAATAATATCTGTCACTCCTACTTTTAATGTTTCTTTTTCAACGGTGCTCCA TCCAAAAGCTTCACTTCCTCCCACCCAACTCTTCCAAATACTCATCATTTAAAACGTTTTTTTTT TGCTAAAATTTATAAAACCTAGCGATATCCTCCGGCATTTCTGTTAATTATTTCATTTGTCCCTG ATACTTCATATCAATTTGGGATGCGTTATATTATTGAAACTATGTATGAAATTATCCAATTTTCA ATTTGAAAGTAATACAGTGGACATAACAGTGGCTTCTGATTACAAATGTCTAATAATCAATACTT GCAAATCCCACAATTTAAGTAAGAAATAATTCCCCAAAAATTGCC Right flanking sequence: Indices 3777838 -- 3778337 CTAGTAGATTCCCACAGGTGTTGTAATACGTCAATAGAAATACACGAGGTTAGACGTCACAGACT GGGTCCCAACAAAAGTAAAAATACCTGAGGTACGTGACAATTATTGTTATTCGAAAGCCTATAAT TGATCACAAAAACATATTTGAGCACAATTATTTTGTGACTTAAGTGATGATAAAATTGTTATTCA ACTTTTTTGAAGACTCATTGTTGACTATTTGACTCATGATAGTTAATTAGTCAAATGAGTGTTTG GTTTCTGATAGTTCAGAACTTTAATCTCAACTTCTAGGAGATTCTAACTAGGAAAGGGACAAGGA AGTTGTGCAAAAAAATGGTGATGTTTCAAATTTTGAAAATTTAAATGATAAAATCAATATATAAT ATATCTATTGAAAAATTATTGTTCCAATGTGAACAAATTACTAGTAAAATTACCAAGTGGGTCCG AAACTTGAAAGCCTGCGCGTCTAGAAAAACCAAATTCCAACATTT Found at i:3778228 original size:7 final size:7 Alignment explanation
Indices: 3778218--3778231 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3778208 TGATAAAATC 3778218 AATATAT 1 AATATAT 3778225 AATATAT 1 AATATAT 3778232 CTATTGAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): AATATAT Left flanking sequence: Indices 3777718 -- 3778217 TAACAGTGGCTTCTGATTACAAATGTCTAATAATCAATACTTGCAAATCCCACAATTTAAGTAAG AAATAATTCCCCAAAAATTGCCAAAATATAAAAATAACATCTAAAATTAAAATATCTAGTAGATT CCCACAGGTGTTGTAATACGTCAATAGAAATACACGAGGTTAGACGTCACAGACTGGGTCCCAAC AAAAGTAAAAATACCTGAGGTACGTGACAATTATTGTTATTCGAAAGCCTATAATTGATCACAAA AACATATTTGAGCACAATTATTTTGTGACTTAAGTGATGATAAAATTGTTATTCAACTTTTTTGA AGACTCATTGTTGACTATTTGACTCATGATAGTTAATTAGTCAAATGAGTGTTTGGTTTCTGATA GTTCAGAACTTTAATCTCAACTTCTAGGAGATTCTAACTAGGAAAGGGACAAGGAAGTTGTGCAA AAAAATGGTGATGTTTCAAATTTTGAAAATTTAAATGATAAAATC Right flanking sequence: Indices 3778232 -- 3778731 CTATTGAAAAATTATTGTTCCAATGTGAACAAATTACTAGTAAAATTACCAAGTGGGTCCGAAAC TTGAAAGCCTGCGCGTCTAGAAAAACCAAATTCCAACATTTATTTAAAATTTTCAGATTAAATTA AATTCCACTGGCACCAAATTACGCCCACCTCAACAATTATCATTATTACGGACCCGATTTATTTT CAAATTTCAATAACAAAAATCTTGATGCAATTCTCTAAAAACACAAAAAAGGGCAATTCTGGTGG AAGGTACAATAAGAAAATTTGGAAAAAAAAACATAGAAAAAGGAGAGAAGATGCAAAAGTACAAC ACAACGAAACCCCTATCTCACTTTTACTGCAACTTCCTCTGCCCAGCCGCTCGGCTGTCCTTGAA GACTTGGACGCGCCGGACTTGTTCTTCTTTTGGCACGTCTTCCCAATCCTGAACTGGAAAAGAAT CAAGAGTTTGCTGGAGCTGTGCGCCATATTCAATAACTTACATTC Found at i:3780110 original size:8 final size:8 Alignment explanation
Indices: 3780097--3780112 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3780087 AGAAAGGTGA 3780097 GAAAATGG 1 GAAAATGG 3780105 GAAAATGG 1 GAAAATGG 3780113 AAAGAGTTAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.38, T:0.12 Consensus pattern (8 bp): GAAAATGG Left flanking sequence: Indices 3779597 -- 3780096 CTAGTAAATTTCCGGAAAAAATAGAGACAACTGAAAATAATATAGCCAATAATTAGAAGGTATCT GCCATAAAGAAACAAAAGGAGGTGAGCACAAGAGATGATATGCGGTAAAAAGTGCAAAAGAGGTG ATCGATAAGTGAGACAACAAGAGGCGGCGTTTGTGTAGAAAAGGGAGGTCAACTCGCCGAAAACT GCAGGAGTCATGACACAAAATTTACTAAAAACTCGCGTGTAGTTTTCCCACGACTTTCGGAGATC AAACCACGAGTTTTTTAGCGATAACTTTTCAAAAACAAGAGAAAAAACTAGTTTCCAACATTGAA AAAAGAGCTGATCAGAAAAAGGAAAAGGCTCTAAATCGTGTGAAAATTGGTGTGTTTACAGCAAC GTAGAGAGTGATCAGGCGACACCAGGAGAGTGTCATGAGCTAAATAAAAAGTTGCGTAATGCAGG CTAAAAGAGCAGCGATCGATTGTAATGAGGGTATAAGAAAGGTGA Right flanking sequence: Indices 3780113 -- 3780612 AAAGAGTTATTTAACCAAAAATAGGTTAGCGACAAAGAGATTAACGGGGTAGTTTAATGGATTGT GATAGTAAAAAAAGTGAAAAGTGGAGCAAAGCTTCACCTTTTCAATGGTACGTCAGCAACAAAAA GGACTTAAATAATATTAACTCGAGAAAGCAAATAGATCAGCTGGATAGTATAATCATGTCAACTC ACAAATTATCACAGAAAATATACTAGCACGCTGTCAAGTTTCGATAGCATGGAACCTTAAAAGTA AGAGGATCTAAGTGTGAAAAAATTAGCATTTTACGACAAGAAGAGAGCAAGGTGTGAATGAGGAA AATGGCGAGAGAAAAAAGCTCGCGCTGCGGTTTTGTGATCAGAGAGGTGGTGGGACAAATAGGGC GGAGTTTGAGCTGTTGCTCTACGTGATAAGAAGAAGCTGCAGGGAAGTGGAGAACGAAAAGACAG CACCAAGAGAAGAGTTTTAAAAGTGCAGAGTTCCAAGCGTCAAAA Found at i:3780199 original size:7 final size:7 Alignment explanation
Indices: 3780187--3780200 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 3780177 TGATAGTAAA 3780187 AAAAGTG 1 AAAAGTG 3780194 AAAAGTG 1 AAAAGTG 3780201 GAGCAAAGCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14 Consensus pattern (7 bp): AAAAGTG Left flanking sequence: Indices 3779687 -- 3780186 GCACAAGAGATGATATGCGGTAAAAAGTGCAAAAGAGGTGATCGATAAGTGAGACAACAAGAGGC GGCGTTTGTGTAGAAAAGGGAGGTCAACTCGCCGAAAACTGCAGGAGTCATGACACAAAATTTAC TAAAAACTCGCGTGTAGTTTTCCCACGACTTTCGGAGATCAAACCACGAGTTTTTTAGCGATAAC TTTTCAAAAACAAGAGAAAAAACTAGTTTCCAACATTGAAAAAAGAGCTGATCAGAAAAAGGAAA AGGCTCTAAATCGTGTGAAAATTGGTGTGTTTACAGCAACGTAGAGAGTGATCAGGCGACACCAG GAGAGTGTCATGAGCTAAATAAAAAGTTGCGTAATGCAGGCTAAAAGAGCAGCGATCGATTGTAA TGAGGGTATAAGAAAGGTGAGAAAATGGGAAAATGGAAAGAGTTATTTAACCAAAAATAGGTTAG CGACAAAGAGATTAACGGGGTAGTTTAATGGATTGTGATAGTAAA Right flanking sequence: Indices 3780201 -- 3780700 GAGCAAAGCTTCACCTTTTCAATGGTACGTCAGCAACAAAAAGGACTTAAATAATATTAACTCGA GAAAGCAAATAGATCAGCTGGATAGTATAATCATGTCAACTCACAAATTATCACAGAAAATATAC TAGCACGCTGTCAAGTTTCGATAGCATGGAACCTTAAAAGTAAGAGGATCTAAGTGTGAAAAAAT TAGCATTTTACGACAAGAAGAGAGCAAGGTGTGAATGAGGAAAATGGCGAGAGAAAAAAGCTCGC GCTGCGGTTTTGTGATCAGAGAGGTGGTGGGACAAATAGGGCGGAGTTTGAGCTGTTGCTCTACG TGATAAGAAGAAGCTGCAGGGAAGTGGAGAACGAAAAGACAGCACCAAGAGAAGAGTTTTAAAAG TGCAGAGTTCCAAGCGTCAAAAAATCAAAAAAATTGGAAATTTTAAAGATCATCAAAAATAGTAC GAATTGCTCATATCCACTCAGTGCCTTTTTATAGGATGAGTAGAG Found at i:3780620 original size:8 final size:8 Alignment explanation
Indices: 3780607--3780622 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 3780597 GTTCCAAGCG 3780607 TCAAAAAA 1 TCAAAAAA 3780615 TCAAAAAA 1 TCAAAAAA 3780623 ATTGGAAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.12, G:0.00, T:0.12 Consensus pattern (8 bp): TCAAAAAA Left flanking sequence: Indices 3780107 -- 3780606 AAATGGAAAGAGTTATTTAACCAAAAATAGGTTAGCGACAAAGAGATTAACGGGGTAGTTTAATG GATTGTGATAGTAAAAAAAGTGAAAAGTGGAGCAAAGCTTCACCTTTTCAATGGTACGTCAGCAA CAAAAAGGACTTAAATAATATTAACTCGAGAAAGCAAATAGATCAGCTGGATAGTATAATCATGT CAACTCACAAATTATCACAGAAAATATACTAGCACGCTGTCAAGTTTCGATAGCATGGAACCTTA AAAGTAAGAGGATCTAAGTGTGAAAAAATTAGCATTTTACGACAAGAAGAGAGCAAGGTGTGAAT GAGGAAAATGGCGAGAGAAAAAAGCTCGCGCTGCGGTTTTGTGATCAGAGAGGTGGTGGGACAAA TAGGGCGGAGTTTGAGCTGTTGCTCTACGTGATAAGAAGAAGCTGCAGGGAAGTGGAGAACGAAA AGACAGCACCAAGAGAAGAGTTTTAAAAGTGCAGAGTTCCAAGCG Right flanking sequence: Indices 3780623 -- 3781122 ATTGGAAATTTTAAAGATCATCAAAAATAGTACGAATTGCTCATATCCACTCAGTGCCTTTTTAT AGGATGAGTAGAGTACCAAGATTGGCACATTGAAATGCTCCAAGTTTGGCAGTTTTTTTTTACTT AACAAAACTATACATAAATCTACGGTTTAATTATAGCCGGTTCATGGATGGACTACCCCAACTTT GAGGTCTTTTGGTGCCAGTTTCAGTTAACTTAATTAATCCAAAAAACCACATTTCACTGAATTTC AGCAAAGTTTCAGACGTTTTGATATAGAAAACTTGTAAAATTCCAGAAGCTTCAAACACGATTAA TAATAAATTGCAGAACCTTTTTACCTTTCTGAAAAGGGATAAGCTGACGATATGCTCTAGCTGCT TAAAAGAAGTAGCAAAAATATTTTTTTTTTTTGATTTTTAAAGCTTTGTTTTAAGTTAGTGAAAA CTGGGATCTAGAAAAGTTTTTTAAATGGACCAGAAATCTAATTAA Found at