TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11226114 original size:9 final size:9 Alignment explanation
Indices: 11226096--11226115 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 11226086 CATCAGTCCA * 11226096 CAACAGCAG 1 CAACAACAG 11226105 CAACAACAG 1 CAACAACAG 11226114 CA 1 CA 11226116 GCAGGGACAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.50, C:0.35, G:0.15, T:0.00 Consensus pattern (9 bp): CAACAACAG Left flanking sequence: Indices 11225596 -- 11226095 CGATACAGTATCTAGAAGGATTTCGAAATTTCTTTGAATTTTCTACAAAGTCATAGATTTTGCAA TAAAAAAGGGAATCAGACAAAAAATGTTAATTGTATTTTTCTGTCCAAGGTCGCAATATTCCGCA ACATGGTAATAAGTAGGCAGGTATAGTGCGCAGGCGCAACTTCAGAACCTGTCTGAACCCCGCCT GCCTATCACCTCTATTCTACGTTGTGGCGCGAATTTACGAGTTTCTAATATTCTTGTAGCTTTAA AATTTGAACTGCAGCGCCAATTTTTGGCGTTCTAGAATGGTCTAGTTCAAATACTTATACTTTTC CATATTTCCAAAAGTTAGGAAACATCCAATAAAATATGTCCAATCACCTAATTTTAGCGTCTACG AGGAAGACGTGGAGCGGCCGAACGGCACACTGCGAAACCGTCATAACCAAGGAAATCGTCAATAC GAGGTGACGACAACAACGGAATCCTTCCATAGAACCATCAGTCCA Right flanking sequence: Indices 11226116 -- 11226615 GCAGGGACATCAAAATGATGGATATCGGTACTAGGTGCATACACTATCAAAATCTCATATCTCTA ATTTTCTCCAATCCCAGAAACCCAGTTTTTTTCTTAATTCTGTTATGCTCATCAAAAAGAATTTC TCATCTCTTTCTCTCCCGCTCTCACTTAATTATTTTTTAAATTAATATTTAATCTAACTATGATA TTTAAATAAATTTCTCTTGTATGTGTATATACCGTGCTCTTAGCGGAATGCGGCATTTTCTCTAT GTCTCTGAATACCCGGCAGTCTTTCGCTTTTTTTGCTTTTACAATTTTTTCGTTTATTTCTTTTT TTTTGCTTTGTTTTGCACCACTCAAACCTTCAACAATAAATTATTCAAATTTCGTATGTTTTTGT GCCCGTCTTGACAACAGTCTCCATGGAGCTCGTCTGAAGATGGTCGAGATGTGTTTTCGTTATAT TAGTCATAAGTCGTATGCAGCTGGAGTACGTTGTCTCGCATATTG Found at i:11226456 original size:10 final size:10 Alignment explanation
Indices: 11226437--11226456 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11226427 GTTTATTTCT * 11226437 TTTTTTTTGC 1 TTTGTTTTGC 11226447 TTTGTTTTGC 1 TTTGTTTTGC 11226457 ACCACTCAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.10, G:0.15, T:0.75 Consensus pattern (10 bp): TTTGTTTTGC Left flanking sequence: Indices 11225937 -- 11226436 AGGAAACATCCAATAAAATATGTCCAATCACCTAATTTTAGCGTCTACGAGGAAGACGTGGAGCG GCCGAACGGCACACTGCGAAACCGTCATAACCAAGGAAATCGTCAATACGAGGTGACGACAACAA CGGAATCCTTCCATAGAACCATCAGTCCACAACAGCAGCAACAACAGCAGCAGGGACATCAAAAT GATGGATATCGGTACTAGGTGCATACACTATCAAAATCTCATATCTCTAATTTTCTCCAATCCCA GAAACCCAGTTTTTTTCTTAATTCTGTTATGCTCATCAAAAAGAATTTCTCATCTCTTTCTCTCC CGCTCTCACTTAATTATTTTTTAAATTAATATTTAATCTAACTATGATATTTAAATAAATTTCTC TTGTATGTGTATATACCGTGCTCTTAGCGGAATGCGGCATTTTCTCTATGTCTCTGAATACCCGG CAGTCTTTCGCTTTTTTTGCTTTTACAATTTTTTCGTTTATTTCT Right flanking sequence: Indices 11226457 -- 11226956 ACCACTCAAACCTTCAACAATAAATTATTCAAATTTCGTATGTTTTTGTGCCCGTCTTGACAACA GTCTCCATGGAGCTCGTCTGAAGATGGTCGAGATGTGTTTTCGTTATATTAGTCATAAGTCGTAT GCAGCTGGAGTACGTTGTCTCGCATATTGGCGGAGTGCCAAATTCCGATAAACAGTATCTTTTGG AGAAACAGTGGGTTTCTGAAAAGTGAGTTTTGAAGAATTCCAGTAGAATTTTGAAAACTATCAAC TGAGAACAGATAAGATTAGTTGCAGTTATCAACATTTTTTAAAGTATGTTAAAACTTTGCCGTCA CTTTTATAAGTAAAATTTTGTCTGAAAATGTATGGAGGGTTATTTAGGATATCTTGGTCATGTTG GACTATCTGAAATTTGTGAATTCGTACAAGTTTTGGCAATAAGCAGGACTAGTAGTAGGCAGGCA AAATTAAAAAATATATCAAGTTTCATTCAAAAATTTGAATTTCCG Found at i:11227909 original size:9 final size:9 Alignment explanation
Indices: 11227891--11227910 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 11227881 AAATCTACAA 11227891 AAGAAATGG 1 AAGAAATGG * 11227900 AAGAACTGG 1 AAGAAATGG 11227909 AA 1 AA 11227911 AATGATAAAG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.55, C:0.05, G:0.30, T:0.10 Consensus pattern (9 bp): AAGAAATGG Left flanking sequence: Indices 11227391 -- 11227890 TCTTAGCTTCCACATTTCCAGGGATGTTCAGTTTAAGAGCAGGAAAAGTGACGATCAAAAGTATG AGCTGAAAAATGTGTTTCTTGATGAAATTTGCTCCATGTTGCTTTTAAGTGTATCAGAAGCCCAT GCAGATGTTATCAATAATTTGGAATCTTTGGTTGAATCTTTGTAATTCAAAAGATCTAGTATAAA GTTCAAAAATGTTAAGGTTGGTCTAGTCGATGTCAAGCTTTTTGGTAAATATCTCCCATCTGACG AGCCCATTGAAGCAGATCCTCGAGATTTCAAACCGGGGATTCCGCAAAATGTGATTCCAGATCAC AAATATTCAAAAGAACTTCAAGCAATGATTGGTGCAATAGAGAGGAATAAGCAGACGGCTGTTGC GGTAGGTAGGTTTTAAAAAAGTGGAGATCAAATTGATAACTTGTAGAATGAGGACTTCAAGCTAG CAAAATCAGCTCAACTAGCTGTTCGGGATTTGAAGAAATCTACAA Right flanking sequence: Indices 11227911 -- 11228410 AATGATAAAGGCGAGGCTGTAGCTGATGAGGATTTTCAAAGGGCGAATGATCTACAAGGTATGTC ACTGCTGCATATCCAAACTTCTACTAATACCCCTACTCTTCAATTTTCAGATGAAATCACTGCGT TACGATCGAATATCCTTGCATCAGTTGATCCACGGTTGCTGGAGGATACCATGGTTCGTAATTCT ATAAATATTATTTCACTAACGTTTAGAAGTTAAAGCCGAGAAATGAAGAGATACATCGGCCAAAA AATCTCTTCCCAGAGAACTCGGAGCTGCCTTCCAAACCGAAGCTTTATCAACCAGTTGGTGAGTT TTTTCAAAAAAAAAGTTTAACACTTAAAGTTAACTCCAACATTCTTTCAGACCTTTCCCCAACTG AAGTTCAAGCTGATCCATCTACTGCATTCCTTCTCCCACCTAGACCACCTTCTTCCAGTTCTTCC AGAAGAACTGTAACCCCGAAAAGACCCCAAACAAATGACTCCGTG Found at i:11228362 original size:9 final size:9 Alignment explanation
Indices: 11228350--11228367 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11228340 CTAGACCACC 11228350 TTCTTCCAG 1 TTCTTCCAG 11228359 TTCTTCCAG 1 TTCTTCCAG 11228368 AAGAACTGTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.33, G:0.11, T:0.44 Consensus pattern (9 bp): TTCTTCCAG Left flanking sequence: Indices 11227850 -- 11228349 ATCAGCTCAACTAGCTGTTCGGGATTTGAAGAAATCTACAAAAGAAATGGAAGAACTGGAAAATG ATAAAGGCGAGGCTGTAGCTGATGAGGATTTTCAAAGGGCGAATGATCTACAAGGTATGTCACTG CTGCATATCCAAACTTCTACTAATACCCCTACTCTTCAATTTTCAGATGAAATCACTGCGTTACG ATCGAATATCCTTGCATCAGTTGATCCACGGTTGCTGGAGGATACCATGGTTCGTAATTCTATAA ATATTATTTCACTAACGTTTAGAAGTTAAAGCCGAGAAATGAAGAGATACATCGGCCAAAAAATC TCTTCCCAGAGAACTCGGAGCTGCCTTCCAAACCGAAGCTTTATCAACCAGTTGGTGAGTTTTTT CAAAAAAAAAGTTTAACACTTAAAGTTAACTCCAACATTCTTTCAGACCTTTCCCCAACTGAAGT TCAAGCTGATCCATCTACTGCATTCCTTCTCCCACCTAGACCACC Right flanking sequence: Indices 11228368 -- 11228867 AAGAACTGTAACCCCGAAAAGACCCCAAACAAATGACTCCGTGTCAACTAGAAGAAGTAGTACAA CTTGGGAAGTTCCGATTCGGCCGACTACTATGAACTCTCAAATTTCAAGAAAAAGGACTCCATCA CCAGTTGTCAGAAAGGCTCCGAGTTCTTCATCATCGAATTCCACTTCTTCTTCTTCAAGACGTGA GCGACTTGAAAAATTAATTTCAGAATGTCAGACTGAATCCAATTTTCAGGAAGAAGCAATAGTAT TGGAATGGGAACAAATAAGTTCCTTGAGAAAGAAAATATGATTGTTCCAGCCGCCTTGAACAGAA AACGATCGTCTTCTGTACATCTAGAATCTCAAGATTTTGTGGATAAATCCACGGATGATATAACT GAAGAGCAGGTTCTTTCGATGGTTCCTCCGGATCAGCGTGGAAATGTTAGATCAGCAATTTCACT TTTTGGATTGGAGCCTGTGAGTTGTTAACTTCTCTAATCACGTCA Found at i:11230053 original size:7 final size:7 Alignment explanation
Indices: 11230041--11230057 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 11230031 AACTATTCTT 11230041 TAAAGAA 1 TAAAGAA 11230048 TAAAGAA 1 TAAAGAA 11230055 TAA 1 TAA 11230058 CAAAAAAAAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.71, C:0.00, G:0.12, T:0.18 Consensus pattern (7 bp): TAAAGAA Left flanking sequence: Indices 11229541 -- 11230040 AGATTTTTATATGTATTTTTCAACTAATTTTTGTTCACATTTTTCTGGAATAAGTTTTTTAATGC AATTTTCAATCGATTTTCGGTTATAATTCCCTCACAATTGAATGTATGAACGATGGTCTTTTGGG AAAAGGCTGTAAAACGTCCAACTAACTTGGAATATCGTCAGGCTCTTCCTGATGGTCTGATCCTT CAGCTCCGAAGGATCACATGGGTACCTTCTGATGTTCTGATCCTTCAGATAAGAAGGATCGTAAG GGAACCTCCTGATGGTCTGATCCTTTAGCTCCAAAGGATCACGAGGCTCTTCCTGATGTTCTGAT CCTTCAGCTCCAAAAGAGCATTGAGCTCTGCCTGATGATCTGATCCTTCCGATGTCACCCAAAAG TTTGTCATCGCGGAGAATTTATCATTATTTGGTAGAAGCTGATTATTATGTATAGTTATACTGTT TCTTGAAAGTTTTCGGTCCTATCATGATAAATTTGAACTATTCTT Right flanking sequence: Indices 11230058 -- 11230557 CAAAAAAAATTTCGAGTTTTTTTTCAACATTTATTTTTTTCAAATTTTGTCAAAAATCCATATGA ATCCATATGAGGTGGTACCCTTACGATCCTTCTTATCTGAAGGATCAGAACATCAGAAGGTACCC ATGTGATCCTTCGGATCGGAAGGATCAGATCATCAGGCAGAGCCTCATGCTCTTTTGGAGCTGAA GGATCAGAACATCAGGAAGAGCCTCGTGATCCTTTGGAGCTAAAGGATCAGACCATCAGGAGGTT CCCTTACGATCCTTCTTATCTGAAAGATCAGAACATCAGAAGGTACCCATGTGATCCTTCGGAGC TGAAGGATCAGAACATCAGGAAGAGCCTCACGATATTCCAAGTTAGTTGGACGTTTTACAGCCTT TTCCCAAAAGACCATCGTTCATATCAGGTTGTCCCATAAGTTTTTGTACTTTTTTTCAAATATTT TTCCAAAACTTCTAGAAAGTTTTAAAATTTTTTCATCGTAGGTCG Found at i:11230110 original size:10 final size:10 Alignment explanation
Indices: 11230092--11230111 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11230082 CAACATTTAT * 11230092 TTTTTTCAAA 1 TTTTGTCAAA 11230102 TTTTGTCAAA 1 TTTTGTCAAA 11230112 AATCCATATG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55 Consensus pattern (10 bp): TTTTGTCAAA Left flanking sequence: Indices 11229592 -- 11230091 AAGTTTTTTAATGCAATTTTCAATCGATTTTCGGTTATAATTCCCTCACAATTGAATGTATGAAC GATGGTCTTTTGGGAAAAGGCTGTAAAACGTCCAACTAACTTGGAATATCGTCAGGCTCTTCCTG ATGGTCTGATCCTTCAGCTCCGAAGGATCACATGGGTACCTTCTGATGTTCTGATCCTTCAGATA AGAAGGATCGTAAGGGAACCTCCTGATGGTCTGATCCTTTAGCTCCAAAGGATCACGAGGCTCTT CCTGATGTTCTGATCCTTCAGCTCCAAAAGAGCATTGAGCTCTGCCTGATGATCTGATCCTTCCG ATGTCACCCAAAAGTTTGTCATCGCGGAGAATTTATCATTATTTGGTAGAAGCTGATTATTATGT ATAGTTATACTGTTTCTTGAAAGTTTTCGGTCCTATCATGATAAATTTGAACTATTCTTTAAAGA ATAAAGAATAACAAAAAAAATTTCGAGTTTTTTTTCAACATTTAT Right flanking sequence: Indices 11230112 -- 11230611 AATCCATATGAATCCATATGAGGTGGTACCCTTACGATCCTTCTTATCTGAAGGATCAGAACATC AGAAGGTACCCATGTGATCCTTCGGATCGGAAGGATCAGATCATCAGGCAGAGCCTCATGCTCTT TTGGAGCTGAAGGATCAGAACATCAGGAAGAGCCTCGTGATCCTTTGGAGCTAAAGGATCAGACC ATCAGGAGGTTCCCTTACGATCCTTCTTATCTGAAAGATCAGAACATCAGAAGGTACCCATGTGA TCCTTCGGAGCTGAAGGATCAGAACATCAGGAAGAGCCTCACGATATTCCAAGTTAGTTGGACGT TTTACAGCCTTTTCCCAAAAGACCATCGTTCATATCAGGTTGTCCCATAAGTTTTTGTACTTTTT TTCAAATATTTTTCCAAAACTTCTAGAAAGTTTTAAAATTTTTTCATCGTAGGTCGTGTCAAGGT CGGGTCGTCCCCTTTCAGAAAAGATTCATTTCATCCATTTCTACT Found at i:11230125 original size:10 final size:10 Alignment explanation
Indices: 11230112--11230132 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 11230102 TTTTGTCAAA 11230112 AATCCATATG 1 AATCCATATG 11230122 AATCCATATG 1 AATCCATATG 11230132 A 1 A 11230133 GGTGGTACCC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29 Consensus pattern (10 bp): AATCCATATG Left flanking sequence: Indices 11229612 -- 11230111 CAATCGATTTTCGGTTATAATTCCCTCACAATTGAATGTATGAACGATGGTCTTTTGGGAAAAGG CTGTAAAACGTCCAACTAACTTGGAATATCGTCAGGCTCTTCCTGATGGTCTGATCCTTCAGCTC CGAAGGATCACATGGGTACCTTCTGATGTTCTGATCCTTCAGATAAGAAGGATCGTAAGGGAACC TCCTGATGGTCTGATCCTTTAGCTCCAAAGGATCACGAGGCTCTTCCTGATGTTCTGATCCTTCA GCTCCAAAAGAGCATTGAGCTCTGCCTGATGATCTGATCCTTCCGATGTCACCCAAAAGTTTGTC ATCGCGGAGAATTTATCATTATTTGGTAGAAGCTGATTATTATGTATAGTTATACTGTTTCTTGA AAGTTTTCGGTCCTATCATGATAAATTTGAACTATTCTTTAAAGAATAAAGAATAACAAAAAAAA TTTCGAGTTTTTTTTCAACATTTATTTTTTTCAAATTTTGTCAAA Right flanking sequence: Indices 11230133 -- 11230632 GGTGGTACCCTTACGATCCTTCTTATCTGAAGGATCAGAACATCAGAAGGTACCCATGTGATCCT TCGGATCGGAAGGATCAGATCATCAGGCAGAGCCTCATGCTCTTTTGGAGCTGAAGGATCAGAAC ATCAGGAAGAGCCTCGTGATCCTTTGGAGCTAAAGGATCAGACCATCAGGAGGTTCCCTTACGAT CCTTCTTATCTGAAAGATCAGAACATCAGAAGGTACCCATGTGATCCTTCGGAGCTGAAGGATCA GAACATCAGGAAGAGCCTCACGATATTCCAAGTTAGTTGGACGTTTTACAGCCTTTTCCCAAAAG ACCATCGTTCATATCAGGTTGTCCCATAAGTTTTTGTACTTTTTTTCAAATATTTTTCCAAAACT TCTAGAAAGTTTTAAAATTTTTTCATCGTAGGTCGTGTCAAGGTCGGGTCGTCCCCTTTCAGAAA AGATTCATTTCATCCATTTCTACTTTGCCACGATGACAATCATCA Found at i:11230975 original size:7 final size:7 Alignment explanation
Indices: 11230963--11230976 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11230953 TTTACTTCAA 11230963 AACTTGG 1 AACTTGG 11230970 AACTTGG 1 AACTTGG 11230977 GTGCCTCATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): AACTTGG Left flanking sequence: Indices 11230463 -- 11230962 CGTTCATATCAGGTTGTCCCATAAGTTTTTGTACTTTTTTTCAAATATTTTTCCAAAACTTCTAG AAAGTTTTAAAATTTTTTCATCGTAGGTCGTGTCAAGGTCGGGTCGTCCCCTTTCAGAAAAGATT CATTTCATCCATTTCTACTTTGCCACGATGACAATCATCAAACTTGAACGTCGAGACGTTAGATT GCTTCTTCTTTATGAATTTCGTCTTGGTCATTCAGCAATGGAAGCGGAACGAAACATATGCGGTG CGATGGGTGAGGGAGCACTCTCTTATAATACAGCAAAGAGTTGGTTTCAAAAGTTCAAGAACGGC GACTTCAGTCTCGAAGAAATAGAACGTTCTGGGCGACCGGTAGAGTTAAATGAAGAAGACCTAGT GAAGCTGGTGGAGGAAGAGCCTCGTCTTAGTCTTCGTGAAATGGAAGAGAAGCTTGAGTGTTGTC ATAGCACAATTGCACGTCACTTGGGTCGCCTTGGTTTTACTTCAA Right flanking sequence: Indices 11230977 -- 11231476 GTGCCTCATGAACTTTCGGCATCACAGAAGCTCACTCGGGTCAACGTTTGTACTCAACTTCTAAC TTTTCGTCGAAAGTTCGATTGGCTGAACAATCTGGTTACTGGAGATGAGAAGTGGGTGCTCTATG TTAACCATTCCAGAAAACGTCAATGGCTTCCGATCGGTGAGAAAGGAATACCGACGCCAAAGCCT GATCTTCACCCAAAAAAGATTATGATCTGTGTCTGGTGGGGTGTTCAAGGACCCGTGCACTGGGA ATTGTTGCCAACTAATAAAACTATCACTGCTGATTACTATTGTGCCCAATTGGACCGAGTTGCAG AAAAGACCAACGGAAAATATGAAAAACTATATTTTCTTCACGATAATGCTAGGCCTCATGTCGCC AAGAAGACTTTCCAAAAGCTGCAAGATCTTGGTTGGACTGTTTTACCGCATCCACCATATTCTCC AGATCTTGCACCAACCGACTACCATTTGTTCTTGTCTCTCAGTGA Found at i:11231992 original size:7 final size:7 Alignment explanation
Indices: 11231980--11231995 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11231970 TTAATTGTTG 11231980 ATGATTC 1 ATGATTC 11231987 ATGATTC 1 ATGATTC 11231994 AT 1 AT 11231996 TTCGAAAAAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.31, C:0.12, G:0.12, T:0.44 Consensus pattern (7 bp): ATGATTC Left flanking sequence: Indices 11231480 -- 11231979 CATGCGCGACAAGCAATTCGACGACGAAGAGCATCTCAAAACTGAACTCTCCACTTTCTTCTCAT CGCGTTCGCCGGATTTCTTCTCCCGTGGCATCATGATGTTACCTAGTAAATGGCAACAAGTGGTG GACACTAATGGTGAATACTTGTGTGAATAGTACTACTTGTCGCTTGAGAGAAATAAATTTTTTTC AAAAAAAAATAGTACAAAAACTTATGGGACAACCTGATACATTCAATTGTGAGGGAATTATAACC GAAAATCGATTGAAAATTGCATTAAAAAACTTATTCCAGAAAAATGTGAACAAAAATTAGTTGAA AAATACATATAAAAATCTAGTTGAAAAAAAGGTTGTCACCAAAGATATGCCCCCCAAGATACACC CCAGTTTGTCTACTGGATACTTTGTCTCCTTGGATACTATGCCCCCAAAGAACCTTTGCCACCAA AAAGTTTGTCATCTCGGAATGAAGGCCCTATAATATTAATTGTTG Right flanking sequence: Indices 11231996 -- 11232495 TTCGAAAAATCGAGCCCGTAAATCGACACACAAATACTACTGTAGTCATTAAAATAATTACTGTA GTTTTTGCTACGAGACATTTTGCGCGTCAAATATGTTGTGCAATACGCGTTCTTTGAACTCTATG TTCCCGTAATACTCTAATTCGAAAATTAAATTTCCAGGAAAAACGACTAGTTTCGGAAACTTTGA CAGTTTTCCGAGATGGCTCGAAACTCCCTTCAATCGCCAAATCTTATGGAACCAAATTGCTCTCT TCAAACTCTAAAAATCTGAAAGGAAGAGCTATATTGATTGAGGTCATTGCAAAACTCTATGGTGT TCCGAATGAGCCAACGTGAGAATTAAAAAATCAAAAGATCGGGCGGGAATTCAAATTTTCAGAGG ATTAAACGATAAAGTGGTCGCTGGATTTGCCACAAAGTGCATCAGAACTTCTGATCCACAAATCC GAACTATTGGAAAAGATCTAATGGTGAAGCTTTACAAGAATGGAT Found at i:11233914 original size:7 final size:7 Alignment explanation
Indices: 11233902--11233915 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11233892 CCCCGACTTG 11233902 ACCATCC 1 ACCATCC 11233909 ACCATCC 1 ACCATCC 11233916 GATGCCTCCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.57, G:0.00, T:0.14 Consensus pattern (7 bp): ACCATCC Left flanking sequence: Indices 11233402 -- 11233901 CGGAATCGGCGCCCGTCGACCAATCAAAAACGTTGAAAGTACACTAATCACGGTCAAATATGCCA AATTTCGGTGCACAAACTGCACGGTAACATCATTTTCGAAAAAGTTCTTCCATGTCGGTGAACGC GACAACATGTTCTCGGGAATCCAATTTTCGGCGAATTTAGGCCATGAATTATAGACAAGACCAGC GTCAAGTCCGGCGACGAAAGCACCCATAATTGCAGTAGAGAATACCATTAACTTGGATCCATGAG TCATTCCACGAAGGGCTCCGAGTTTAGAACGCACCTTTGAGAGCTGGAAAAAATAAAATAAGAAA ATGGAATTTGAAATCATTTCAGAGTCTTACATCATGTGGCTTCACTAAATGAGAAAGTCCATTCC AGAAGAAAATCGAATAGAGCACAAAAGCCATCGTCAAATGGGTAGCCAGCCGATACTGTGATACT CTCGGAACATCCGATGAATTCTTCGATGGATCAAGCCCCGACTTG Right flanking sequence: Indices 11233916 -- 11234415 GATGCCTCCCTGAGCCAGCAAAAGTGTGGTGGCCAGTGCCATTCGTCGCTTCATATCCGGTGCGA ATCGGCCACGAGCCCAGAAATAGGCGCACGGGATCAGGAAAACGATACCGATGGCGCGTCCCCAC ATTCGATGGCCATATTCCATTGACCAAATGAATTTGAACTCGTTTAGTGTCATCTCTTCGCTTGA GGATTTGCTGAAAATTAACGTTTTTATTTTCAATTTGAATTCCAGACGATTTTCTGCCACAAAAT ACGGTATCCGGTCTCGACACGACAATTTTTGTTTCATGAGAAAAGGTGTGCACCTTTAAAGAGAA CTGTAATTTGAAACTTTCGTTGCGACGGAATTTTTATTGATTTTTCATAGTTTGCAAATGATTTA ATCAAAAAACTATTTATGAAAAATCAACGAAAATTTCACAGCACCGTAATTTTGAAATTACAGTA CTCTTCAAAGACGCACGCCGTTTCTCATTTAACGAAAATTGTCGC Found at i:11234682 original size:10 final size:10 Alignment explanation
Indices: 11234667--11234687 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 11234657 ACAGCACCGT * 11234667 AGCACATTCC 1 AGCACATCCC 11234677 AGCACATCCC 1 AGCACATCCC 11234687 A 1 A 11234688 TAAGCCACCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.33, C:0.43, G:0.10, T:0.14 Consensus pattern (10 bp): AGCACATCCC Left flanking sequence: Indices 11234167 -- 11234666 CCACAAAATACGGTATCCGGTCTCGACACGACAATTTTTGTTTCATGAGAAAAGGTGTGCACCTT TAAAGAGAACTGTAATTTGAAACTTTCGTTGCGACGGAATTTTTATTGATTTTTCATAGTTTGCA AATGATTTAATCAAAAAACTATTTATGAAAAATCAACGAAAATTTCACAGCACCGTAATTTTGAA ATTACAGTACTCTTCAAAGACGCACGCCGTTTCTCATTTAACGAAAATTGTCGCGGTGAGACCTG GTACCGTAGTTTTGGCGCAAAATTTGGTGTCTTTTTTATCTTACTATTTATATTCTGGATAAGCT TTATATTTCTCAAATTCCTCTTCCCATTGCTTCTGTCCGAATGGCGGTTTCATCGTTCTGAACAG ATCCCAGTTCACCATGCTCAGTCCTGATTCGGTTAATCTGAAATTTTATATTTAGTTGAAAAAAT ACATTAATAAGCACCTGGTGACTCCTCCAAGCGCCACAGCACCGT Right flanking sequence: Indices 11234688 -- 11235187 TAAGCCACCATCCGATGCGTTTTCTGGATTTGTCGTCGACATCTTTCACCGATATTCCAAAGTTT CTTCGGAATCCTTGCCTCACATTCTGGATTCCTTGGCTCAACAGAGAAACTCTTGGAAGTTGGGA GAACTTGGTCAGCTGTTTGCTGGCTAGCAGCCACATGGCTTCTAAATTTTTGGAACCTGACAACT GTCTGTTGTTGTGATATCTAAAGATCTCTAGGGTGATTATTCTTCCGCTTTTCTATAAATTTCAA ACTTTCCGAATAACCAGACCATTTTTCATTGGGAGAATCGATAAGAAAAGAAGGAAAAACGGTAT TTCGGTGGAACACAGTAAAGTAACGGGTAGTTGACGGAAGACACTGAAAGATCATGAGCAAACGG GGCTCCATGCGGAGAAAAAAGACAATTAACAGCAAACAATGATAACGAGGGGGAAAAAAAGAACA CTAATCTATCTACGAAATATGCTAATTGCGAAACTGTTATTAGGC Found at i:11235613 original size:7 final size:7 Alignment explanation
Indices: 11235601--11235614 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11235591 GCATTCCCTG 11235601 AAATTAT 1 AAATTAT 11235608 AAATTAT 1 AAATTAT 11235615 TCAGATGTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): AAATTAT Left flanking sequence: Indices 11235101 -- 11235600 AATTAACAGCAAACAATGATAACGAGGGGGAAAAAAAGAACACTAATCTATCTACGAAATATGCT AATTGCGAAACTGTTATTAGGCTTATGGAGCGGTGGGTAAATTATTGGAAATAATTTTGATGATA ATGCGATACTTATTAATGGTTGACATTGTGTCCTTCAGTTGGTGGAATCGGCAGGCTCGGTGTGA ATCCAAGTGTCTCGAATTTGAATCTCCAATAAGCAACAACCATTCGATCCCAGATGTTTCCAATA TCATTCACGGCCGGTCGAACATCAAGAATAGTGAAAAGCTTTGAGCTTGGATCCACAGCACCACC ATCGTAGTAGTCAATGACGTACTGAACTTGCTTGGTTCCGCATCTATCAACAATCCAATCGTGAC GATCGAATGGGAGATCGTATCCGAGGAACAAGTTGCGGAAACGAGCTCTTGGCGATAGGTTCTTG GCATCTCCTTTGAAGCTTTTCAGTTTCGGCTCTGCGCATTCCCTG Right flanking sequence: Indices 11235615 -- 11236114 TCAGATGTTGGAATTTTCATGAGCTTACGGATGAAGAAGATTCTCCCATTTCAACACCTCTCTCC ATGCCTCCTCGTTGTTAGCGTTATGGATGCTGATAATGTTTTCCATGTCGCTTTTGCTCAGCGAG TCATCTTGCCATCTCCATCCTTTTCTGAAATTCAAATTTAAAATCAACAATAAACATTTATCAAT CAAAAACTCACTTCAGCATGGCGTTCCAGAACATTTGGGGACTTGGATAGGTCCAGGTTTCAGTT TCTGTTCCAGCTTTCGGGATTGTAGACTTCTCTCGTTTCGTTGGAAGTGCGAATGGCTGATCTGG GGCTGGCTTTTGATTTGGATGTTCGAGCTCCTGAATTTTCAAAGTTGGCTTCAGAAAACTCTATT TTGAACTCACATTGTTGAGTGGATTGATAGAAGCCTTGTCAGCACCAACCGGGCAAGCGCCACCA GCTCCACAATTCTCTCCAGATGCAGCAGCTCTCTGTTCAGGTGTT Found at i:11239160 original size:10 final size:9 Alignment explanation
Indices: 11239129--11239161 Score: 34 Period size: 10 Copynumber: 3.4 Consensus size: 9 11239119 CTTGCAACAA 11239129 TTTATTTTT 1 TTTATTTTT * * 11239138 CTTAATTTAT 1 -TTTATTTTT 11239148 TTTATTGTTT 1 TTTATT-TTT 11239158 TTTA 1 TTTA 11239162 ACAGAAGATA Statistics Matches: 18, Mismatches: 4, Indels: 2 0.75 0.17 0.08 Matches are distributed among these distances: 9 5 0.28 10 13 0.72 ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76 Consensus pattern (9 bp): TTTATTTTT Left flanking sequence: Indices 11238629 -- 11239128 TTGTGGCTTCTTCACAAGGGATCGTGTCAGAACCGTTAGTTGATGCCAGAGCCTGAAAATTAGTG AAATAGTTTGTGTCTACAAAAACAATTGATTCTTACTTTTTCTCCCAGAGCTCCTTGAGATTCTT CCAGTCATCGGCCAGAGGTCCATTGGCAGCCGCCAGCTTTCCGTTGAGGTAGTCTTGAGCAGTCA TCCTGAGAAATTCTCGATACATTAAAAATTGAGACGAGAAATGAGTGAAGAAGAAAGAAAATGAA GGAGTAGGAGCAATCAAAACAAAAATGGATTTCGAATAGCTAAAATGAACATTTTTGGCGAGCGC GCTCTCACAAAAATCAAAACAAAAAACTTTTTTTGAATTTTATTTGTCAGCAATTAAAGGCGCAT GGCCTTTCACTTTGGAAATATCGAGACGCGAAAGACAATGTTTTCGGTCACGGCCATATGTCTGC GTCTACAGTCTCTTCAACATATGCGATAGGGCGCGCTTGCAACAA Right flanking sequence: Indices 11239162 -- 11239661 ACAGAAGATATTGTTTTTAAAGTGCGAACACCCTTCTCGATTTATCCGCCAGCTGGCAACACAGC TTTTCAGGTTTTCCTTCCAGATTTGTGTGTTTTCTTCTTGGTTTATAGCGAAATCTGATAAAAAT CGCAACTCTGAATAAAAATTATGTCAAACAAAGGCGTTGCTGTAAAATTGTGTCCATCCAATAGA TTTTCCTCGCTTATTCTCGTATTATCTTTTTTCTTGATTTGCAAAAAAATGATCCAAGTATTTCG AAATTTCTGAAAATTCCGTGTTGTTACACGTCACATATCCTATCATTCGTTTTCTTCATTATCAT CTTTTCTCCCTTTCACTGCAACGCTTCAAAATTAATCTCTGGTGCTTCGTTCTTATCTTCCGGTA CTATTTCAATGTTCATACTACTTTCTATTGATTACTCGTTCAAAATTCCTAATTGTTAGTTTCTT TTTTCAGATGATCTCTCGATTTACAACGAGTTTCCTTTTATGGAT Found at i:11240209 original size:9 final size:9 Alignment explanation
Indices: 11240197--11240215 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 11240187 TTCGTCGTCG * 11240197 TCGCCTTCA 1 TCGCCTACA 11240206 TCGCCTACA 1 TCGCCTACA 11240215 T 1 T 11240216 TATCTACGCG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.42, G:0.11, T:0.32 Consensus pattern (9 bp): TCGCCTACA Left flanking sequence: Indices 11239697 -- 11240196 CTGGTAAGTTTTTCTTTTGATTATTTGTTTCAATAATACAAATGAATTTCAGCGGCCTCTGACAA AGTTCTTCTTCGCGATGTATCAGCAATTACTCTACACAAAGGAAAAATGACGACAGGACGACGAG TTTCTCCAACCTTCCAGTTGAAGTGTGTCGGTGGATCCGCGAAAGGTGCCTTCACCCCAAAGGTG GTTCAGTGTGCAAATCAAGGTTTTGATGGTTCGGATGTGCAGTGGAGATGTGATGCAGATTTGCC ACATGATATGGAATTCGGATCCGTTAGTTTTTTAAATATTTCCATCTCGCTTCAAAAAATGTTTC TTGTTTCAGATCAGTGTTTCATGTGAAGGATACGATTACGCAGAGGATCCATACATCCTGAGAGG ATCTTGCGGGTTGGAGTATGAGCTCGAGTACAATTCTGCGAGCGGTAACAGATCAGTTTCTCGAA AGTCATCCCAGGATCGATGGGATCAGTTCGCCACGTTCGTCGTCG Right flanking sequence: Indices 11240216 -- 11240715 TATCTACGCGATGTGGACTAACAGAAATCAGAACCCAGAAAGCTCTGGCTACACTTCTGGTGGAT CAGGAGGTCCTGGAGGCCCAGGATCCGGCGGAGGAGGTGGTGGTCCAGGTGGTTATCCAAGTGCT CCTCCACCATATGACGACTACTCCAAGCCACCGCCATATGGGTTCCGTGGTGACTCGCAATCTGG AGGTGGATGGTAAGGAATTTTAAATAAAAATGACCTTATTTTCATTAAAATTAAGTTTTTCAGTC AGGGAAGTTCTAGCGGAGGAGCAAGTGGCAGTGGCGCCAACAATGGTGGATCGTTTTGGACTGGA GCAAGTCTAGGAGCCATTGGAGGATACCTGGCATCCAGCTTCCTCAACAATAACAATGCCTACGC CCGTCCACGATACAACAGAGGATTCTTCCAAGACACAGGCTTCTCAAGTTCCGATTCCTGGTCAT CACCTTCTACTTCATCAATGCGCTCAAGTTCTGGTTACGGTGGCA Found at i:11241788 original size:7 final size:7 Alignment explanation
Indices: 11241778--11241793 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11241768 TTCTGTATTC 11241778 TTTTCAT 1 TTTTCAT 11241785 TTTTCAT 1 TTTTCAT 11241792 TT 1 TT 11241794 GTTTCAATTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75 Consensus pattern (7 bp): TTTTCAT Left flanking sequence: Indices 11241278 -- 11241777 TCTGTGCAAGGAACTTGAGCATTTCTAAAAGATATAAGTTATTATCTGTGCTCGGGGAATTACTG TGAGCCGGTTGTTTTCTAATTTTCTTTGACTTTTTATTTTGTAAAACTAGATTTTCTGTATTATT TTCATTTTTCTTTCGTTTCAATCTAGTTTTTGACAGAATTATCCAAATGCTCAATTTTGTGCCAA GCATTCGCTATTTACCCGGCCTCCACACAGCTGTGCACAGCAAATTTTTATTCTATGCGAAAAAG TGTGCGCCTTTAAGGATTACTGTAGCTGTTAACTTGTGTTGTTGCAGAATTTTTCAGCTACCGTA CTCGCAATTATTTCTGGATGTTTTATCTAGAAAAAAGAATACTTTTTCGCTAGAAAACCTTAAAA TAAAAGCTGAAAAGTTTTTTTTTTTGGAATACTGACTCACGCCGGTTTTTAAAAATGTTTACTAA TTTTATTTGACTTTTTTCTCTTGTTAAACTAGATTTTCTGTATTC Right flanking sequence: Indices 11241794 -- 11242293 GTTTCAATTTAGTGTTTGGCAAAATATTATCCAAATTCTCAATTTTGCGCCAAAAATTCGCTACC CGGCCCCGACACAACACACTTTTATTCAATGCGAAAAGATGTGCGCCTTTAAGGATTACTGTAGC TGTTAACTTGTGTTGTTGCAGAATTGTTATCGATATTTCATGGTTTTTTCGCGATTTGTTGAATT TTATGTTTGTTTAATTGTTTTACTTTAGTTTTTTCAATAAAAAAAAAGAATATAAATACAATTTT ATCGAAAAACTACAAAAAATCGATAAAAATTCCGCAACAACAGAAGCTGGGACCATGATCACGTG TCAAAATCCAAATTTTTTCAGATTTTTCAGGAAAAAAACTCACGTTAACTCATCAGTGACATCAA ACACATTCGGCTGAATTGTCTTCAAGTACTTGCTGTTCGAGCAGAAGATTGATGCAAGCTTCACC TTCCGAATCTCATTCAACTGTCCTGGTGTGAACTTTGCCGCGCTG Found at i:11243362 original size:9 final size:9 Alignment explanation
Indices: 11243348--11243366 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11243338 ACATAGGCTG 11243348 TCAGTTGAT 1 TCAGTTGAT 11243357 TCAGTTGAT 1 TCAGTTGAT 11243366 T 1 T 11243367 ACGGTATCCG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47 Consensus pattern (9 bp): TCAGTTGAT Left flanking sequence: Indices 11242848 -- 11243347 GAATGCTGCAGTGGCAAATGGCTGTGAGATTGAAGCATCGCAGGTGTTATCGTACCCTCCAAAGT ATCCATTTTTCTTGGGTACCAGGTTTTGGGCATTGAGAAGGTCTAGGCCTATAATTTTTGGAAGG AATTCAGCAAAAGTGATGTGTTGCATTTCAGCAGTCACAATACGACGAGCTTCCTCGAATACGGT GTCATCATTCCATTGTGGATTCAGAGCAGATAGTTGCATAGCAATTCTATTATGTTCTCTGACAA AGAATGTGTGCATAATAGTGAGTCCTGGTTGATGAGAATTACGTTCATCTCCTGCAACAAAGCAT GGCATATGCCTCTTCTCAAGTGTCGACCTGCAGTCTTTTTCTTGATTTCCCTGCGGCAACATCAT TTGACCATGTCCAAAGTCCGTAAAGTTCAAGAGTCCACGTGTGAATAATCTCAGATTCTTGGCTT CACACTTTGTTGATCCATAAATCGCTGAACCATCAACATAGGCTG Right flanking sequence: Indices 11243367 -- 11243866 ACGGTATCCGAGATTGAGTTGTCCGAGAAGAGATCGGGCAAACGGAAGGCATCTAGGTTCTCCAT TCGGGTAGTTGGTTGGGAAGAATGGATCGTCCTTTTCCACTCGTATAGGCATGCAATGAACTGAA ATCTTTTCCGGTGAATCACACTTTGTGCAATTCAGAATTTCATCATTAGGCCCACGTGCCACTGG AGAATGGGTCAGCTCATGGTCTAGAAGCTGTCCAAACTGCATTACCATATGAGTGAACTTTACAT GAGATACATCCTTATCCTCGCATACCAAATTCGAAACTCTACGTGGATTTGGAAGTGGTCTTCCA GATTTTGCGCGGGTCCTTGGTGCATCGAATCCGTCGTCATATTGTGGTGGAAGAAGATGTCGAAG TGGGGCAAAGGAGTTGGCATATTCTGGGAACTTCAAATTGTTGCACCATCCGTTGAAGGTACGAT AGCGAGTTGTATGATCACATGGAAGCATCTTTGGGCTGCATTCTT Found at i:11244060 original size:9 final size:9 Alignment explanation
Indices: 11244043--11244060 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11244033 TAGAAGCGCA * 11244043 GAGATTTGC 1 GAGACTTGC 11244052 GAGACTTGC 1 GAGACTTGC 11244061 TTAGCGCCTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28 Consensus pattern (9 bp): GAGACTTGC Left flanking sequence: Indices 11243543 -- 11244042 TAGGCCCACGTGCCACTGGAGAATGGGTCAGCTCATGGTCTAGAAGCTGTCCAAACTGCATTACC ATATGAGTGAACTTTACATGAGATACATCCTTATCCTCGCATACCAAATTCGAAACTCTACGTGG ATTTGGAAGTGGTCTTCCAGATTTTGCGCGGGTCCTTGGTGCATCGAATCCGTCGTCATATTGTG GTGGAAGAAGATGTCGAAGTGGGGCAAAGGAGTTGGCATATTCTGGGAACTTCAAATTGTTGCAC CATCCGTTGAAGGTACGATAGCGAGTTGTATGATCACATGGAAGCATCTTTGGGCTGCATTCTTC TTGACTGGATTGTCCATCCTCTGATAAGAAAGCTGTATAGTTATTGACAAATGAGGTGACATCAA TATCAGGAAGGATCTTCTGAAGTGTATGTGTATCCAATTTTGGTAGTTGCTCATCCGTATCTAAT CCTTCTCCCTTTATCAAAAGCTTCGTAGTTTCTAATAGAAGCGCA Right flanking sequence: Indices 11244061 -- 11244560 TTAGCGCCTTCCTTTGCTCTCATCATATTTGAATATGCGAAAAGTGGATCTCCTTTCACAAATCT TCCTTGGTTATGCTTCAAATTCGATATTTCTCTACGTTCCTGGTCTTTGAGATTGCGTTTAGCCA GACTGATAACTTTCTCGATGGTTTCCTGTCGAATCGGGAACACTGGCTTTCCTTCGGCATCCCTC CATTCATTGAAGTCAGGACTGTTCAAGACTGTGGAATTGCAGGAGATTGCCATGTTGCTGAAAAT ATAATGATGCTTTCGTTGTTTTTAAAGTACATTCGGATTAGGTTTTTTCTTCATTGGATTATATC TGGGATGCAGGATTAAACACTCTATCCTACCCTACGCTACGCTAAAGACCAACTAAAGTAAAACT TAATCTCTATCGAGAATTAGAAAGTATTCAGGATCTTAAACGCAGCTGGAAGGGATTTAACAAAC AAAAAAAATTAAAATTTAAGCGAAAACTTACTCGAAAACGTCCTC Found at i:11244287 original size:10 final size:10 Alignment explanation
Indices: 11244268--11244287 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11244258 TTCATTGAAG * 11244268 TCAGGACTGT 1 TCAAGACTGT 11244278 TCAAGACTGT 1 TCAAGACTGT 11244288 GGAATTGCAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30 Consensus pattern (10 bp): TCAAGACTGT Left flanking sequence: Indices 11243768 -- 11244267 AGTTGGCATATTCTGGGAACTTCAAATTGTTGCACCATCCGTTGAAGGTACGATAGCGAGTTGTA TGATCACATGGAAGCATCTTTGGGCTGCATTCTTCTTGACTGGATTGTCCATCCTCTGATAAGAA AGCTGTATAGTTATTGACAAATGAGGTGACATCAATATCAGGAAGGATCTTCTGAAGTGTATGTG TATCCAATTTTGGTAGTTGCTCATCCGTATCTAATCCTTCTCCCTTTATCAAAAGCTTCGTAGTT TCTAATAGAAGCGCAGAGATTTGCGAGACTTGCTTAGCGCCTTCCTTTGCTCTCATCATATTTGA ATATGCGAAAAGTGGATCTCCTTTCACAAATCTTCCTTGGTTATGCTTCAAATTCGATATTTCTC TACGTTCCTGGTCTTTGAGATTGCGTTTAGCCAGACTGATAACTTTCTCGATGGTTTCCTGTCGA ATCGGGAACACTGGCTTTCCTTCGGCATCCCTCCATTCATTGAAG Right flanking sequence: Indices 11244288 -- 11244787 GGAATTGCAGGAGATTGCCATGTTGCTGAAAATATAATGATGCTTTCGTTGTTTTTAAAGTACAT TCGGATTAGGTTTTTTCTTCATTGGATTATATCTGGGATGCAGGATTAAACACTCTATCCTACCC TACGCTACGCTAAAGACCAACTAAAGTAAAACTTAATCTCTATCGAGAATTAGAAAGTATTCAGG ATCTTAAACGCAGCTGGAAGGGATTTAACAAACAAAAAAAATTAAAATTTAAGCGAAAACTTACT CGAAAACGTCCTCTCTGAAGAATACATTCCGTTGAATTCTACGAATATCAATATTGGAGCAAATG ATCTCAGCTAGCTTGGTATTTCTGATTTCAGAAAGCTGAGCCTCATTGAATCCCGATTGAGCAAA ATAGTTCTCATACCAAAAACGATCAGCTCTTCTTGTCTGTAATTCTAATTGTTCTCTAAAATACT GAATCGAACTTTTACCCTTTGCATTTGTTTTCCGATAATGCATGC Found at i:11244534 original size:7 final size:7 Alignment explanation
Indices: 11244519--11244534 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11244509 AACAAACAAA 11244519 AAAAATT 1 AAAAATT * 11244526 AAAATTT 1 AAAAATT 11244533 AA 1 AA 11244535 GCGAAAACTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (7 bp): AAAAATT Left flanking sequence: Indices 11244019 -- 11244518 TTCGTAGTTTCTAATAGAAGCGCAGAGATTTGCGAGACTTGCTTAGCGCCTTCCTTTGCTCTCAT CATATTTGAATATGCGAAAAGTGGATCTCCTTTCACAAATCTTCCTTGGTTATGCTTCAAATTCG ATATTTCTCTACGTTCCTGGTCTTTGAGATTGCGTTTAGCCAGACTGATAACTTTCTCGATGGTT TCCTGTCGAATCGGGAACACTGGCTTTCCTTCGGCATCCCTCCATTCATTGAAGTCAGGACTGTT CAAGACTGTGGAATTGCAGGAGATTGCCATGTTGCTGAAAATATAATGATGCTTTCGTTGTTTTT AAAGTACATTCGGATTAGGTTTTTTCTTCATTGGATTATATCTGGGATGCAGGATTAAACACTCT ATCCTACCCTACGCTACGCTAAAGACCAACTAAAGTAAAACTTAATCTCTATCGAGAATTAGAAA GTATTCAGGATCTTAAACGCAGCTGGAAGGGATTTAACAAACAAA Right flanking sequence: Indices 11244535 -- 11245034 GCGAAAACTTACTCGAAAACGTCCTCTCTGAAGAATACATTCCGTTGAATTCTACGAATATCAAT ATTGGAGCAAATGATCTCAGCTAGCTTGGTATTTCTGATTTCAGAAAGCTGAGCCTCATTGAATC CCGATTGAGCAAAATAGTTCTCATACCAAAAACGATCAGCTCTTCTTGTCTGTAATTCTAATTGT TCTCTAAAATACTGAATCGAACTTTTACCCTTTGCATTTGTTTTCCGATAATGCATGCCATAGTT GGTCCAACGAGTGATCCCTTCAGTGGCTTTTCAGCAAGAACACCTACTAGAAGATCAACGTCTTC AACTCGAGTATAGGCAGATGAAACTTGCTCAAATTTGACTTCAGGAAGGAAAATTTCACGGAGGT CGTTGAAAGAGGCAATCTTCAAAAATATATAATTGTCTTTAAAATTGAACTAATGAGATCAACTT ACTCTTCCAAGCCCACAACTAGCTCTCAAAGCAGTGTATCCAGGA Found at i:11247982 original size:8 final size:8 Alignment explanation
Indices: 11247969--11247984 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11247959 AGTGGTGGTC 11247969 AGAAAGAG 1 AGAAAGAG 11247977 AGAAAGAG 1 AGAAAGAG 11247985 GGAGAATGAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00 Consensus pattern (8 bp): AGAAAGAG Left flanking sequence: Indices 11247469 -- 11247968 TGGCAAATGTGACATAGGGCAGAAAAAGCAGTGAAGAAGTCAGTTGAGAAGAGGGGGGAGAAGTC TATACAGTCAGTTGGGGGCTATTGGGGCGGAGAGAAACTGACGCATATTGCATAACACCGTGACA GTACCTCAGATAAAGAGATGACCAGAACCGGATTGAATTGGCTGGAAGAGTGTGGACGAGAAAGT GAGGAAAGAGAGACGGACACGAAGGACAACGCGGAAAAAAAAGTAGCTGAGGAGGCGATAGGGGA TGGAAAAAAGACAAACGAAAAAAGGCGTCCGAAGGTTTTGATCGTTGAAAGTTCGACGTCAGTTT ATCTTTTTTTTGGACACAAGCATGCGGAGAGGGCAACCCGTTTCTTCTTTTTGTTTTGAATGTGC GGGGGTGATTCGAATTATGATTGAAGTTGGAATTCTACCGGAGAGAGGCAAAAGCCTATCCAGCA GGAACTGGAACAAAACGAGAGGTAATTAGAGAGGAAGTGGTGGTC Right flanking sequence: Indices 11247985 -- 11248484 GGAGAATGAAGCAGGTTCAGATCAGCGTGTTGTGGAGGTTTTGAACTGGGGTGAACACGAGTTGA GGAACGGATTCTCAAGTGCTTCAGGATTTTTTTCGGCTTAGGATAGATAGACTGGGTAGAATCAC GTTGAAATAAGCAAAAATTATTCTTGTTTTTGGGAACTGAAGGTAGTTTGACAAGTGGTAAAATT TGCATATATCCTTACAGGTGCTTCAAATCTGTAAAATTTTGAAATCCAGAAAAACTCAAAAAGTC GAAGCTGTGCTTTAGGAAATGCAGACATTGGATCAAGAATGTTTGAGAACCAAATTCGCCTTCCT CGAGTTCTGGCTAATTTTGGAAACTTTCTAATAAAATTTGTAAACTGTAGGGAACTTTCTTGCGT AGTATGAAATTTGGTGAAAACCTCTTCAATAAGTTGTAACTGTATTGCCCAGATGTATTTCCAGT AGGCTTCAAGCAGGCACGTGGGCCTGAAAAGGCTAGAACAAGCTA Found at i:11249747 original size:9 final size:9 Alignment explanation
Indices: 11249729--11249747 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 11249719 CTCTCGCTGT 11249729 ATGCATCCA 1 ATGCATCCA * 11249738 ATGGATCCA 1 ATGCATCCA 11249747 A 1 A 11249748 AAATAACTGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21 Consensus pattern (9 bp): ATGCATCCA Left flanking sequence: Indices 11249229 -- 11249728 TTTCCGGTTAGTCTGAAATTATTTTGGGTCAAGTTCCGCAGCATTTTCCTGAAAAAAAGCGGGAG GAAATTAAGAAACCCGTGCCGATGACGACACACGAATTGGTCCGACGAAATTTGCAAGTGAATTA AATTTCCTGGAACAAGAAATAAACGTCATCATCGCTAGCAAAAACATTTGAATTCTCGAAAAAAT ACAACTTTGTCATTATTCAGCAGAAGTTGTATTGACTGAAATTTACATTTGACGTCTTTGTGCAA AGCCAGAAATAAGATTCTACTCACGTTTTTTTCACAGAAAATGTGATGTTCTTGGTGGGATTCGG CGATGTTAGCTAGACAAGTTTCGTCTGAAAAATTAGAAAAATTCCTTGAAATAAATTTTACCAAA ATAGTTTTCCCTCAAGATGACCACAGTATCCGTTGACTAAACATTGGCATAGAGAAATCTGTTTC TGAAAAATGACACTGCAATTTTTTACAATTAGGTGCTCTCGCTGT Right flanking sequence: Indices 11249748 -- 11250247 AAATAACTGTACATTAAATTCCAAAAACTTTAAAAACGTTTATCAATTCCAAACCGGCAAACCAG CCTTTTAATTTTTTTTTTGCGAAATTGACAAATCTTGCATATTTCGCATTTAATAAAAATTATTC CAAAATATCTTTGATCTTTCAATTTATAATATACCTAACTTTCTCACAAGATTTATCTCAAATTT TTATGCAAAATAAATTTTTCATCGATTTCAATTTTAAAGGAAGTCACACTTTGAGTTTTGAATTT CAAAGCAGGAAGAAGACATTTTTTCGGAATATTTATTCCTTCTGATTCCGAAATTGTAGTTTGTG ATCTTTAGCTATTGACATTTTTCGAACCCCATGCGCTTCTAGAATCTACATAAAATCCACTATAG CTTATAAAAATGCTAATCGGACTTAAAAGATCAGTAGCAGCAGTAGATAATCATGTTATAAACAA GCAGAACTCTTGATGACACATGGGAATCTTTTTTATCAGTGTCCT Found at i:11249784 original size:9 final size:10 Alignment explanation
Indices: 11249770--11249789 Score: 33 Period size: 9 Copynumber: 2.1 Consensus size: 10 11249760 ATTAAATTCC 11249770 AAAAAC-TTT 1 AAAAACGTTT 11249779 AAAAACGTTT 1 AAAAACGTTT 11249789 A 1 A 11249790 TCAATTCCAA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 6 0.60 10 4 0.40 ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30 Consensus pattern (10 bp): AAAAACGTTT Left flanking sequence: Indices 11249270 -- 11249769 CATTTTCCTGAAAAAAAGCGGGAGGAAATTAAGAAACCCGTGCCGATGACGACACACGAATTGGT CCGACGAAATTTGCAAGTGAATTAAATTTCCTGGAACAAGAAATAAACGTCATCATCGCTAGCAA AAACATTTGAATTCTCGAAAAAATACAACTTTGTCATTATTCAGCAGAAGTTGTATTGACTGAAA TTTACATTTGACGTCTTTGTGCAAAGCCAGAAATAAGATTCTACTCACGTTTTTTTCACAGAAAA TGTGATGTTCTTGGTGGGATTCGGCGATGTTAGCTAGACAAGTTTCGTCTGAAAAATTAGAAAAA TTCCTTGAAATAAATTTTACCAAAATAGTTTTCCCTCAAGATGACCACAGTATCCGTTGACTAAA CATTGGCATAGAGAAATCTGTTTCTGAAAAATGACACTGCAATTTTTTACAATTAGGTGCTCTCG CTGTATGCATCCAATGGATCCAAAAATAACTGTACATTAAATTCC Right flanking sequence: Indices 11249790 -- 11250289 TCAATTCCAAACCGGCAAACCAGCCTTTTAATTTTTTTTTTGCGAAATTGACAAATCTTGCATAT TTCGCATTTAATAAAAATTATTCCAAAATATCTTTGATCTTTCAATTTATAATATACCTAACTTT CTCACAAGATTTATCTCAAATTTTTATGCAAAATAAATTTTTCATCGATTTCAATTTTAAAGGAA GTCACACTTTGAGTTTTGAATTTCAAAGCAGGAAGAAGACATTTTTTCGGAATATTTATTCCTTC TGATTCCGAAATTGTAGTTTGTGATCTTTAGCTATTGACATTTTTCGAACCCCATGCGCTTCTAG AATCTACATAAAATCCACTATAGCTTATAAAAATGCTAATCGGACTTAAAAGATCAGTAGCAGCA GTAGATAATCATGTTATAAACAAGCAGAACTCTTGATGACACATGGGAATCTTTTTTATCAGTGT CCTTCTCACCGGGACATTTAATCAGCTTTTCCTATTCACTCCTTT Found at i:11250769 original size:10 final size:10 Alignment explanation
Indices: 11250747--11250769 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 11250737 ACTAACCTTA * 11250747 ATTTCAAAAT 1 ATTTAAAAAT * 11250757 ATTTAAAATT 1 ATTTAAAAAT 11250767 ATT 1 ATT 11250770 ATGTTAGTTG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48 Consensus pattern (10 bp): ATTTAAAAAT Left flanking sequence: Indices 11250247 -- 11250746 TTCTCACCGGGACATTTAATCAGCTTTTCCTATTCACTCCTTTTTCCTACTTCCTATTTGTTCAC ATGTTACGTAGAGTTGACACGACATCGTTAAAGGTTCATAAACACATCAAAAACACCAATATGAA AACAAATATCTTTTAAAAAATATGTGATGTAGTTTTGGGCTTTTGCAACTTAAAATTTAAAAAAA TGACGGTGATAAGAAACACGATAGAATAAAATACTAACAGTAGTACACATTTTTAGTAACTTGCA AAGTTGGAACTTCTGAAGAAAATCACTATTTCTTCTAATTTCCGCCCGAATTTCTTACCTGCCCA TAATTAGCGCATAACTTTTGCTCGGTTTTTCTGAGTAGATGTTATTACGGATAATAATAGATGTG ATAAAACTAGGACTCATATAGCCAAAATGTAGGTGTAAGTGCCTATTTCATGCCTACCATGTTTT TAAAACTTCCTGTTTCAATTATAACCGTTATGGTCACTAACCTTA Right flanking sequence: Indices 11250770 -- 11251269 ATGTTAGTTGTTTCAGTTTGTGTACCCACGAACCTTTAATGATGTGGACGACGTAACGTCTATTT TGAGGTTGGTAGGAAGGGTAGTATCACAAAACAACCATCACAAGAAAAAATATACAATTTTTGGA AGTAAAACTAGGGTTTTTTTTCAGTTTCTAAGAATATTCAGATCAAGCTTCGTAGTTCAGAACTT TTCACCCAGGAAGTTGTCTGTAAAAAGTTCTGCATTTCTCAGAATTTCTGGAAAGTCCATGGGCT TTAAAAATTCCAACCCCTACTCCTTTGACTTATTTAATTTCATAAAATTTATGCAAAGCAAGTCA GCGTGGCTAACAAGATCTAGTACATTTTCATTTCAGTGGTCTATAATATGTTCTGTTCTTTTTAC AACATAGATGAGGTGACCTGAACTATAAGTGAACATTCCATGGAGTTTATGACTAGGATTACACA TTGATCTATTTTTCGCAAATATAGAGAAGGAAAAATTAAAAAGAT Found at i:11251274 original size:7 final size:7 Alignment explanation
Indices: 11251264--11251277 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11251254 GAAAAATTAA 11251264 AAAGATG 1 AAAGATG 11251271 AAAGATG 1 AAAGATG 11251278 TCAATGTCTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14 Consensus pattern (7 bp): AAAGATG Left flanking sequence: Indices 11250764 -- 11251263 ATTATTATGTTAGTTGTTTCAGTTTGTGTACCCACGAACCTTTAATGATGTGGACGACGTAACGT CTATTTTGAGGTTGGTAGGAAGGGTAGTATCACAAAACAACCATCACAAGAAAAAATATACAATT TTTGGAAGTAAAACTAGGGTTTTTTTTCAGTTTCTAAGAATATTCAGATCAAGCTTCGTAGTTCA GAACTTTTCACCCAGGAAGTTGTCTGTAAAAAGTTCTGCATTTCTCAGAATTTCTGGAAAGTCCA TGGGCTTTAAAAATTCCAACCCCTACTCCTTTGACTTATTTAATTTCATAAAATTTATGCAAAGC AAGTCAGCGTGGCTAACAAGATCTAGTACATTTTCATTTCAGTGGTCTATAATATGTTCTGTTCT TTTTACAACATAGATGAGGTGACCTGAACTATAAGTGAACATTCCATGGAGTTTATGACTAGGAT TACACATTGATCTATTTTTCGCAAATATAGAGAAGGAAAAATTAA Right flanking sequence: Indices 11251278 -- 11251777 TCAATGTCTGAAATTACCAAAGGTGTCGTTCTAAACTTGGGCAAGACATTGGCAAATATTTGACA AAAGTTGGTCCAAACTTGGAACTTGTCACCTTGTAGTTTCAATTTCTGAACCCAGTTTATACTAT CAGACTAAACTGGAGCCAAATTCAGAGATTGATAGTTTCAAGTGAACATTTACGTTAGACAATAA AACAAATATGTTCGATTTAGAATACATAATAATAAATATTTCTAGCATCATTTTAAGCTCTATTT CTCTGTGAAAAACAACAATAAAAGCTAGCTTAATGCCCCACAGAAATATATCAGCCTTCCCCTTG CACATTTTATTCCAAAAAAATTAGCTGGTCAGAACTAATGTGCTCATTCATTTTCAAAATATTAT AAGAAACATGTTTTAATACAAAAACCCTTCTGTACCCCAGGCACCTACCAGAAGACAGATACCTT GCAGTTAATGAGAAATGTATTAGTATGCGTGGTGTTCTTAATCTT Found at i:11252168 original size:7 final size:7 Alignment explanation
Indices: 11252156--11252169 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11252146 TGACCTATTA 11252156 CAGCCTC 1 CAGCCTC 11252163 CAGCCTC 1 CAGCCTC 11252170 GAAAAATAGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.57, G:0.14, T:0.14 Consensus pattern (7 bp): CAGCCTC Left flanking sequence: Indices 11251656 -- 11252155 TCAAAATATTATAAGAAACATGTTTTAATACAAAAACCCTTCTGTACCCCAGGCACCTACCAGAA GACAGATACCTTGCAGTTAATGAGAAATGTATTAGTATGCGTGGTGTTCTTAATCTTTGAGCTGA CTTTATTTTTGGAAGACAAGCTTCTGCTTTTGCTTTTTGTTGTTTTTTTTTCTGATCTGTAAACA GGAACTCAAAGTTTTCATGACACAAACAATGTTCCTCGCACAAAAGTGACTTTTAACAGTTTCAA GCACTTCCACGTGTTTTCCTGTTCAGGGGATTCAGACAGATTTAGATATTAGTAGGGGATAATTT CATGAATCCCATAATTTTGATCTTATTGTTTTGGATTAGCAAAAGGATAAAAATTATATTAGTAT GAAAGCTCATAAGCTAGTACTAGGGCACATTTGAAGCAAAATAATTGGTTTTAAGGTTTACAAAG TTTTTGAGCTCTACGTATTGCCTGATCTACCTACTTGACCTATTA Right flanking sequence: Indices 11252170 -- 11252669 GAAAAATAGGCAGAAGGCAGGCACATAGGCCTGAATCAAGGTCTCACCACAACTCTTCTTAATTA GTCTCTGAACATCTTTTCAAGTCAGCTAAACTGCACTGGCAAGGCAACTGTTTATGCACGAAAGT TTTCCCCGAATTCTCAGGCTTTACCGCCAAAAATTCCTTGTCTAGAATATTTTCCAAGTTTTTGT AACTTGAATATATCAAAGATTCCAAGTAAACTGCGTTCCGAGTAACACTATTTGAGCTTTCAACA TGTTTACCACCCTCACATATTAACCCGTATTTTGCTCGAAAAAAGGAGAATAATCAAAAATCATA ATTTGATTTTGATAACTGAGTTTGTTAAGAAAACATTTTATCAAACAAAAATATATGTAGACAAT AGTTCACCTTCAGCTAACCAAAACAAAATGCATTCTGCGTGCACTTGATTACGGTATTCAGTCTG GGCTCCAATTGGAGGCAATCCAAGAAGTTTGTGGTTGTTTCATCT Found at