TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11254191 original size:7 final size:7 Alignment explanation
Indices: 11254175--11254191 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11254165 AATCCAACTC 11254175 TTTCTAT 1 TTTCTAT * 11254182 TTTTTAT 1 TTTCTAT 11254189 TTT 1 TTT 11254192 ACTTCCTTGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82 Consensus pattern (7 bp): TTTCTAT Left flanking sequence: Indices 11253675 -- 11254174 CTGCATCTGAATATTTATTTACTTTTTTTTCAGACTTTTAAATGCTGGTGTTCTGCTGATATTTG TATTTTTCAACCTGGTTCTCAGAATTTTAAAATTATTTTCCAAACAAAATTTAATGTTTTGTCGC TTTATGTGGTATATACATGGATTTGCAATTGTAAGAAATTGCGAAATAGTTATTTCTTGTCAGAA ATAATCACAAATGCGTTTCAAATTTCTGCCAAGATATTAGCTAATTACGATGGAAAGTTTTCAAG CATCTTCATAGATTTTGACTGCTGATTTGTATCATAGTACTTTTACTGATTAATCTTTATCATCT TAAAAAATTACATTCCGAGAATTTTATAATCTAACCAAACAGTTTGTATTAATACCATTTCTTGA AATGTTCGTTTAAAAAACAAATGTTCATTTCCAACTGATAAGTCATAATCTACTTTCATACACTA CTTTGCTGAAATCTAGTAAAATATCTACCCAACTAAATCCAACTC Right flanking sequence: Indices 11254192 -- 11254691 ACTTCCTTGTTTGTAAATTCTGCTTCTTAATAATATTTTGTTTGTTCAAAGCTCCAGGCGCCCCA AGAACGATTAACTCCGCTGGGGGGTCGGTGAATGGCGTTCGAAAGAGGAAGTGATACACGTTATA ACATGTACATTCGCAATTGCACACAGCTATGAAATCAGGGGGTTCAGCCTCTCCGAGAAGGTTAT GATCGGATCAGCTACAGTTACGACACAAGAAAACACAAGGGAATTTTATGAAATGATGTAATCGA GACACGACGTGAGTTCAATTGAAGTTGACATGGTTTTCGTTATTTGATGAACAGACACAGTGGAA CCCCTACCAACTTCCGCCATACAATGGGTCACAAGAGATTCACGGCGACGTCAGATGTATTTCTG AAAGATAATTGATATTATTCGAGATTGTTCTCCGCATCATGTAGACACTTTCCTCGAAAAAATAG GAGGAAGAGTGCGTGATTCCTAGGTAAAATGACAATTATCGATGA Found at i:11255041 original size:8 final size:8 Alignment explanation
Indices: 11255024--11255041 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11255014 ATACCAGAAC * 11255024 AATTTCAG 1 AATCTCAG 11255032 AATCTCAG 1 AATCTCAG 11255040 AA 1 AA 11255042 ATTTCAGGAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28 Consensus pattern (8 bp): AATCTCAG Left flanking sequence: Indices 11254524 -- 11255023 CAACTTCCGCCATACAATGGGTCACAAGAGATTCACGGCGACGTCAGATGTATTTCTGAAAGATA ATTGATATTATTCGAGATTGTTCTCCGCATCATGTAGACACTTTCCTCGAAAAAATAGGAGGAAG AGTGCGTGATTCCTAGGTAAAATGACAATTATCGATGATGATGATGATGACCATAATTGAAGGGG CAGAATATTGAAAAATAAACAAGTTGATTTAGGATAACGGATCAGGAATCTTCAGAAGAAGGTGA TGCTGAAACTGTATGAAAGTCTGAAAACTAAAAGGCTATGGGTTTGTTGAAGAAAAAAAAAGACT GTGCTCAAAGTTATATGAAGAAACACACAATTTCATATGATCTAGGAAAATCTGATAACATAGAG TTGAGCTTCTTGGGCTACGGCAAGGTTTTTTATTACAATTTCTGATAATCACATAAGAAGGAAAA TGTGCTGGAGGACTCAGTTCTAGATATCTCAAGGCATACCAGAAC Right flanking sequence: Indices 11255042 -- 11255541 ATTTCAGGAAGCCCAGAAGTTCTTTGCAGGCAAGGATCTATTACCTAAATTTATAAATTCTAGAG ATTGCTTTCTTGCCATTACAATTTCAAATTTTAAAAAATTCATATTTTTCAACATCGAACTTCAT ACAGTAATCACATTCAAATACTCGTCAGAGTCAGAAACCAATATACACATTCTAACATATGTTTT AGTGCTTCAGAAAACACTTTTTTAGGGATGACGTGACGCCAGTGGTGACCACCTAGGAGGAAGTC GAGGAAGTAGTAGTTTCTCTGAAATTAAATGATATCCCTGATGATAGATGAGGGTGTGTGTGTTT AGAAAGACATTTCAGGAAGCAACACGACGCATTTAAAAGGGATCAAGAACCTCCAAGTGAACGTC TTCATCACTTTCTCCGCTTCTTCCGACGACCTCTTCTAATTTTGGGAGCTTCGAAACATGAAGTG CAACAGGAAAACGAGGAAGTGCTCTGGACGTCCGTGCTCTCTTTT Found at i:11255581 original size:8 final size:8 Alignment explanation
Indices: 11255568--11255597 Score: 53 Period size: 8 Copynumber: 3.8 Consensus size: 8 11255558 ATGTGTATGC 11255568 TATGTGTG 1 TATGTGTG 11255576 TATGTGTG 1 TATGTGTG * 11255584 TGTGTGTG 1 TATGTGTG 11255592 TATGTG 1 TATGTG 11255598 CATCTCGCCG Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 20 1.00 ACGTcount: A:0.10, C:0.00, G:0.40, T:0.50 Consensus pattern (8 bp): TATGTGTG Left flanking sequence: Indices 11255068 -- 11255567 CAGGCAAGGATCTATTACCTAAATTTATAAATTCTAGAGATTGCTTTCTTGCCATTACAATTTCA AATTTTAAAAAATTCATATTTTTCAACATCGAACTTCATACAGTAATCACATTCAAATACTCGTC AGAGTCAGAAACCAATATACACATTCTAACATATGTTTTAGTGCTTCAGAAAACACTTTTTTAGG GATGACGTGACGCCAGTGGTGACCACCTAGGAGGAAGTCGAGGAAGTAGTAGTTTCTCTGAAATT AAATGATATCCCTGATGATAGATGAGGGTGTGTGTGTTTAGAAAGACATTTCAGGAAGCAACACG ACGCATTTAAAAGGGATCAAGAACCTCCAAGTGAACGTCTTCATCACTTTCTCCGCTTCTTCCGA CGACCTCTTCTAATTTTGGGAGCTTCGAAACATGAAGTGCAACAGGAAAACGAGGAAGTGCTCTG GACGTCCGTGCTCTCTTTTTGCTCTATTCTCGCTTATGTGTATGC Right flanking sequence: Indices 11255598 -- 11256097 CATCTCGCCGCCCAAAGAGGCAAGGAGTTATTTTTTATTAGAAATCCCGCCTGTGTGTGAGAGGC CACGCCCCATTTCAGACAGCATCCCGCCCCACGTCGCCTGGTGTCACCCCACACTGTCACCAACG CCCGTGTATTCTGAATGTGTCACGAGCCATCAACGTCTGCTGAGCAGTCGACAGACTGTCTTGAA ACTGTATTCTTACCTGTAGAAACCGTACCAGATACCGTATCATTTTTGTTTGACTCTGCTTTTCG AATAGGCACCCGTTCACAGTGCATCATCCTTTTGCTAATGGCTCTTTTTATTCCCTGCTCAGGTG AGTATTGTGCTCCAAGACTATTTGAGGTCTAGCGTTCTCTAAACTCATTTTTATTTCCTCATCTT TTTCGGATGGGGGCGGAAGGAAGACCGCACGACCAAAAACAAAAGCAAAAAAAAACAGAGCGTTT ACCAGTCGGCGCGGACGGATTTCCTCTAATCACGTCATTTGTTGT i:11264374 original size:7 final size:7 Alignment explanation
Indices: 11264362--11264380 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 11264352 GAAATAAAAC 11264362 TATTTGA 1 TATTTGA 11264369 TATTTGA 1 TATTTGA 11264376 TATTT 1 TATTT 11264381 TAATACTATA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63 Consensus pattern (7 bp): TATTTGA Left flanking sequence: Indices 11263862 -- 11264361 AAATGTAATGCCATAAACAAAAGTACAAAAATTTTCAAATTAAGAACCGTTAGAAAAAAAACCAA AAAAAAAAAATAACCGGACCAAAATAAATAAATATTAAATTCAAAAACTCTGAAATTACCTAGGA CATGCTATTTATAAATGTCTGATTTTCTAAAAATGGGTATTCTAAACCTAAACGTTCAGCAAAAG GAGATAATCGAATTTTGTCTGGAAATCAAAAAGAATATGCAAAGAAATGGGAAAAGGGGCATAAA GATCAATTGTGCCATGATTCACTGTGTCCGATGTTTGCTCCTTTTTTTCAGAACTTCCTGGTCTG GAAAAAGCGGCACCATACAGCAATGTTACCTTATAAGTCAAGGGAGCTGAAATTTGAAAGTACCA ATTTTTTCAAATGCCAGCGCAAAAATGCTGATCCTCGCGCAATCGAAATTTTGACCAATAAGCGA TACTGACCACACCCCATGCACATCGCTGATTGGTCGAAATAAAAC Right flanking sequence: Indices 11264381 -- 11264880 TAATACTATAGTTTGTTAATTTTTAATCCTTCCGAACACAAAGCCCGCAAAACATGTTTTTGGTA ATCCTCGTATCAACTACGTAGCATTTTTCAATACCTAGAACAGAAGAAAATTATAGTTTTAATTG TGTTATCCTGCATTACTACTCAGTTCAACAATTTTGCCAAAGATCCGCAAAACATCTCGTAATTC TCCCCCTTTGTAGCTTCTCCCCCGCGGACTACAATCTGATCCACTTCTGGAAAGTTATTTTCAAG GCATTTACATTTCTGACCGAATGACGTAGATTTTTGGAGTTTAAATAGCAAATACAACTTTAGTT CCGGATTACTATAGTAAATGGGGATATTTGTCGATTTTATAAAACAATTTCTGAAAACGTCACAG GTATAAGTAGGATTTTAATGTAATTTTGAAGGGGTTAAAATGTTTCAAATAGAAGAAAGAAAAAA GTGAAACCGAATTTTCAGGTTCAGCGCAAGACTGAGCTGGAGCAT Found at i:11264836 original size:7 final size:7 Alignment explanation
Indices: 11264817--11264836 Score: 26 Period size: 7 Copynumber: 2.9 Consensus size: 7 11264807 AAAATGTTTC * 11264817 AAATAGA 1 AAAAAGA * 11264824 AGAAAGA 1 AAAAAGA 11264831 AAAAAG 1 AAAAAG 11264837 TGAAACCGAA Statistics Matches: 10, Mismatches: 3, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05 Consensus pattern (7 bp): AAAAAGA Left flanking sequence: Indices 11264317 -- 11264816 TACTGACCACACCCCATGCACATCGCTGATTGGTCGAAATAAAACTATTTGATATTTGATATTTT AATACTATAGTTTGTTAATTTTTAATCCTTCCGAACACAAAGCCCGCAAAACATGTTTTTGGTAA TCCTCGTATCAACTACGTAGCATTTTTCAATACCTAGAACAGAAGAAAATTATAGTTTTAATTGT GTTATCCTGCATTACTACTCAGTTCAACAATTTTGCCAAAGATCCGCAAAACATCTCGTAATTCT CCCCCTTTGTAGCTTCTCCCCCGCGGACTACAATCTGATCCACTTCTGGAAAGTTATTTTCAAGG CATTTACATTTCTGACCGAATGACGTAGATTTTTGGAGTTTAAATAGCAAATACAACTTTAGTTC CGGATTACTATAGTAAATGGGGATATTTGTCGATTTTATAAAACAATTTCTGAAAACGTCACAGG TATAAGTAGGATTTTAATGTAATTTTGAAGGGGTTAAAATGTTTC Right flanking sequence: Indices 11264837 -- 11265336 TGAAACCGAATTTTCAGGTTCAGCGCAAGACTGAGCTGGAGCATAAATTTGAGAATGATCCTATA ACATTCGAATAAACTTAGGCCTAAACTTTAGGCTGATCCTGAGCATCAGCCTGAATTGAAAGTTG GTCTAAACCTAAGTCTTAGCCTAATAGTAAGCCTAAACCATCCCTTTTCTCTAAATACATTTCTC TCACTTGAACTTTTTCACATAAAACGGTCATTTCGTCCGTAGACACATAATCATTGGCATACAAA CTTACTGTTTTGAGGGACACGAAGAAAAAAAAAAGAGAAAACTGAATGCAAACCAGTTCAAAGAA TGCAGAATGAGGAATGAGTACGACAGTCAACACAATTCAGGCATCAATCAAAACACATTTATGGA AGAATTGAAAGAATTTGTCGCCTTTGAACACATGCTAATTTTAGAACACTTTTGTTTTTATTTTT TCTATTTTTCAAATTTTCAATGTAAAACCAAAGATTATTCAGTTA Found at i:11265176 original size:7 final size:7 Alignment explanation
Indices: 11265166--11265179 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11265156 AAAGAATGCA 11265166 GAATGAG 1 GAATGAG 11265173 GAATGAG 1 GAATGAG 11265180 TACGACAGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.43, T:0.14 Consensus pattern (7 bp): GAATGAG Left flanking sequence: Indices 11264666 -- 11265165 GTAGATTTTTGGAGTTTAAATAGCAAATACAACTTTAGTTCCGGATTACTATAGTAAATGGGGAT ATTTGTCGATTTTATAAAACAATTTCTGAAAACGTCACAGGTATAAGTAGGATTTTAATGTAATT TTGAAGGGGTTAAAATGTTTCAAATAGAAGAAAGAAAAAAGTGAAACCGAATTTTCAGGTTCAGC GCAAGACTGAGCTGGAGCATAAATTTGAGAATGATCCTATAACATTCGAATAAACTTAGGCCTAA ACTTTAGGCTGATCCTGAGCATCAGCCTGAATTGAAAGTTGGTCTAAACCTAAGTCTTAGCCTAA TAGTAAGCCTAAACCATCCCTTTTCTCTAAATACATTTCTCTCACTTGAACTTTTTCACATAAAA CGGTCATTTCGTCCGTAGACACATAATCATTGGCATACAAACTTACTGTTTTGAGGGACACGAAG AAAAAAAAAAGAGAAAACTGAATGCAAACCAGTTCAAAGAATGCA Right flanking sequence: Indices 11265180 -- 11265679 TACGACAGTCAACACAATTCAGGCATCAATCAAAACACATTTATGGAAGAATTGAAAGAATTTGT CGCCTTTGAACACATGCTAATTTTAGAACACTTTTGTTTTTATTTTTTCTATTTTTCAAATTTTC AATGTAAAACCAAAGATTATTCAGTTACACATTTTGCACGTGAATTTTGAAATATTACTGCAAAG GTGTAATGTCCGGAAGTATAAAAAAAATGATGTGACGGGGCGAAAGATAACAAGACTAATAATTG AAAATCGGATGTTACGTAGTAGGTTCAGCCACTTGGTTGTTTGGTTTTGATTACAGATTAAGCTT TGGTTGAATTTAAGAAGACGGGTGACATTGGAAAAAAATCACAGTAGCTTAAAAAAAAAGCAAAA ACTTCAAAGGAATATCTGTGGTTAACAGTTAACGATTTTTATCTCTTGTGAAGTTTTTTTTGTTA ATTTTCGATAATTAAAATTAAAGGCCATTTCAGATTTTACCGAAC Found at i:11265299 original size:8 final size:8 Alignment explanation
Indices: 11265288--11265312 Score: 36 Period size: 8 Copynumber: 3.1 Consensus size: 8 11265278 TTGTTTTTAT * 11265288 TTTTTCTA 1 TTTTTCAA 11265296 TTTTTCAA 1 TTTTTCAA * 11265304 ATTTTCAA 1 TTTTTCAA 11265312 T 1 T 11265313 GTAAAACCAA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64 Consensus pattern (8 bp): TTTTTCAA Left flanking sequence: Indices 11264788 -- 11265287 ATGTAATTTTGAAGGGGTTAAAATGTTTCAAATAGAAGAAAGAAAAAAGTGAAACCGAATTTTCA GGTTCAGCGCAAGACTGAGCTGGAGCATAAATTTGAGAATGATCCTATAACATTCGAATAAACTT AGGCCTAAACTTTAGGCTGATCCTGAGCATCAGCCTGAATTGAAAGTTGGTCTAAACCTAAGTCT TAGCCTAATAGTAAGCCTAAACCATCCCTTTTCTCTAAATACATTTCTCTCACTTGAACTTTTTC ACATAAAACGGTCATTTCGTCCGTAGACACATAATCATTGGCATACAAACTTACTGTTTTGAGGG ACACGAAGAAAAAAAAAAGAGAAAACTGAATGCAAACCAGTTCAAAGAATGCAGAATGAGGAATG AGTACGACAGTCAACACAATTCAGGCATCAATCAAAACACATTTATGGAAGAATTGAAAGAATTT GTCGCCTTTGAACACATGCTAATTTTAGAACACTTTTGTTTTTAT Right flanking sequence: Indices 11265313 -- 11265812 GTAAAACCAAAGATTATTCAGTTACACATTTTGCACGTGAATTTTGAAATATTACTGCAAAGGTG TAATGTCCGGAAGTATAAAAAAAATGATGTGACGGGGCGAAAGATAACAAGACTAATAATTGAAA ATCGGATGTTACGTAGTAGGTTCAGCCACTTGGTTGTTTGGTTTTGATTACAGATTAAGCTTTGG TTGAATTTAAGAAGACGGGTGACATTGGAAAAAAATCACAGTAGCTTAAAAAAAAAGCAAAAACT TCAAAGGAATATCTGTGGTTAACAGTTAACGATTTTTATCTCTTGTGAAGTTTTTTTTGTTAATT TTCGATAATTAAAATTAAAGGCCATTTCAGATTTTACCGAACTAGGTATTATACTTTTTGGAAAA TTCTGGGAAAGATTCAGAAAAAATTTTGTATTAAAAAAAAGCGAATTTATTTTCAAAACTGTTAA TGTGATATACATTATTATCATATTTTCCGTTGAAAATATTTCCGC Found at i:11265299 original size:9 final size:9 Alignment explanation
Indices: 11265281--11265300 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 11265271 AACACTTTTG * 11265281 TTTTTATTT 1 TTTCTATTT 11265290 TTTCTATTT 1 TTTCTATTT 11265299 TT 1 TT 11265301 CAAATTTTCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85 Consensus pattern (9 bp): TTTCTATTT Left flanking sequence: Indices 11264781 -- 11265280 GATTTTAATGTAATTTTGAAGGGGTTAAAATGTTTCAAATAGAAGAAAGAAAAAAGTGAAACCGA ATTTTCAGGTTCAGCGCAAGACTGAGCTGGAGCATAAATTTGAGAATGATCCTATAACATTCGAA TAAACTTAGGCCTAAACTTTAGGCTGATCCTGAGCATCAGCCTGAATTGAAAGTTGGTCTAAACC TAAGTCTTAGCCTAATAGTAAGCCTAAACCATCCCTTTTCTCTAAATACATTTCTCTCACTTGAA CTTTTTCACATAAAACGGTCATTTCGTCCGTAGACACATAATCATTGGCATACAAACTTACTGTT TTGAGGGACACGAAGAAAAAAAAAAGAGAAAACTGAATGCAAACCAGTTCAAAGAATGCAGAATG AGGAATGAGTACGACAGTCAACACAATTCAGGCATCAATCAAAACACATTTATGGAAGAATTGAA AGAATTTGTCGCCTTTGAACACATGCTAATTTTAGAACACTTTTG Right flanking sequence: Indices 11265301 -- 11265800 CAAATTTTCAATGTAAAACCAAAGATTATTCAGTTACACATTTTGCACGTGAATTTTGAAATATT ACTGCAAAGGTGTAATGTCCGGAAGTATAAAAAAAATGATGTGACGGGGCGAAAGATAACAAGAC TAATAATTGAAAATCGGATGTTACGTAGTAGGTTCAGCCACTTGGTTGTTTGGTTTTGATTACAG ATTAAGCTTTGGTTGAATTTAAGAAGACGGGTGACATTGGAAAAAAATCACAGTAGCTTAAAAAA AAAGCAAAAACTTCAAAGGAATATCTGTGGTTAACAGTTAACGATTTTTATCTCTTGTGAAGTTT TTTTTGTTAATTTTCGATAATTAAAATTAAAGGCCATTTCAGATTTTACCGAACTAGGTATTATA CTTTTTGGAAAATTCTGGGAAAGATTCAGAAAAAATTTTGTATTAAAAAAAAGCGAATTTATTTT CAAAACTGTTAATGTGATATACATTATTATCATATTTTCCGTTGA Found at i:11266790 original size:6 final size:7 Alignment explanation
Indices: 11266779--11266795 Score: 27 Period size: 6 Copynumber: 2.6 Consensus size: 7 11266769 ATTTTGGGTC 11266779 TTTGTT- 1 TTTGTTG 11266785 TTTGTTG 1 TTTGTTG 11266792 TTTG 1 TTTG 11266796 GTCAGGAAAT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 6 6 0.60 7 4 0.40 ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76 Consensus pattern (7 bp): TTTGTTG Left flanking sequence: Indices 11266279 -- 11266778 ACCATCCCAACTTTAGTAATATGTTCTCAAAATATCAGAGCAAAAAGCTCCGCACGAGTGCTCAC ATAGTTCCTTTCATGCACACATAGAAGTCAGAATACATATATGTCATCAAAAATTGAACAGTGAC GTTTGTGCCAACTCATGCAACTTGGAGCTGCAAGTAGGTAAATTCAATAGTCTAAAATTTGATCC GGGCAGGTTCTGCGGAGATGAGTCGGGGGTTTTTTTACATTCTAGATTTTTTCTAAACTGCCCAA ACTGATATACATACCGTAGGTACAAAAAATGTGTTGAATTAAAAAACTTCCTCCTCAAAGTTTGA AGCAACTTTTCCCGACAACAATTATTTTGTCAACAGAAACATAGTCCTCAGAACTCTCGTGTGAA ATTTTAAAAAATCTAAGAAATTCGGACAAATATTATCGGAACTTGACTTGCTACCTAACCAAGTA CATCACCTTTTTATTTTCCGATGGAAAGCCGGAAAATTTTGGGTC Right flanking sequence: Indices 11266796 -- 11267295 GTCAGGAAATGCTAGAAAATTATTTATCATCTCCAAGTTTATTAACTGTGTGAGGGATTTTCAAC ATTTAAATTTAGTTATGTCTAGTTTGTGTTCTGACTCTGGTGTTCTTTAAAAATTATTTTTAAAA AGTGCACTCTGAAAATGACACAAACCGGAACTTCTTCTTAAGGGGTTTCCCCCAAGTTCAACTAT GACATAGATTTGAGAATACGTCAGTTTCAGACAGGGAACTTATTTTGTCCAATTAAGAGAAAATA AGATGAAGAATGAAGAAACACAAACAGACAATACGGAACGAATAAGGAAATTGGAGATGAGGGGA AGCGTTCGGAAAATTGACAAAAAATGAGGGTTTCTGGAAAGCAAAGTTTATAGAAATATTGACAA AAAGTTTGAATTCTAGTAAAAGTCTTTACACTGTGATATGTTGAGTATCGGAAAACCGAGTTTTT TTATGAAACACATTTCTAGTTACTTGAAAATGTGCTCTACTGACG Found at i:11267070 original size:7 final size:7 Alignment explanation
Indices: 11267058--11267072 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11267048 AGAAAATAAG 11267058 ATGAAGA 1 ATGAAGA 11267065 ATGAAGA 1 ATGAAGA 11267072 A 1 A 11267073 ACACAAACAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.00, G:0.27, T:0.13 Consensus pattern (7 bp): ATGAAGA Left flanking sequence: Indices 11266558 -- 11267057 GTACAAAAAATGTGTTGAATTAAAAAACTTCCTCCTCAAAGTTTGAAGCAACTTTTCCCGACAAC AATTATTTTGTCAACAGAAACATAGTCCTCAGAACTCTCGTGTGAAATTTTAAAAAATCTAAGAA ATTCGGACAAATATTATCGGAACTTGACTTGCTACCTAACCAAGTACATCACCTTTTTATTTTCC GATGGAAAGCCGGAAAATTTTGGGTCTTTGTTTTTGTTGTTTGGTCAGGAAATGCTAGAAAATTA TTTATCATCTCCAAGTTTATTAACTGTGTGAGGGATTTTCAACATTTAAATTTAGTTATGTCTAG TTTGTGTTCTGACTCTGGTGTTCTTTAAAAATTATTTTTAAAAAGTGCACTCTGAAAATGACACA AACCGGAACTTCTTCTTAAGGGGTTTCCCCCAAGTTCAACTATGACATAGATTTGAGAATACGTC AGTTTCAGACAGGGAACTTATTTTGTCCAATTAAGAGAAAATAAG Right flanking sequence: Indices 11267073 -- 11267572 ACACAAACAGACAATACGGAACGAATAAGGAAATTGGAGATGAGGGGAAGCGTTCGGAAAATTGA CAAAAAATGAGGGTTTCTGGAAAGCAAAGTTTATAGAAATATTGACAAAAAGTTTGAATTCTAGT AAAAGTCTTTACACTGTGATATGTTGAGTATCGGAAAACCGAGTTTTTTTATGAAACACATTTCT AGTTACTTGAAAATGTGCTCTACTGACGACGAATGATAAATTAATGAGAAGCTACAAGAAAAGTG TTGCCTGCCTGGTAGGTACGTAAGCATGCAGTTTTTGCCTCCAGTTATTTAATAGTTATGGACGA CATAAAAATTGGGGGTGCTGATTTCAAGCATGCTGAAATTATCTAATCCTCATTCAGAGTTTTGA AAATTTCTATAATATTTTCAGTCAAACTTCTATGAAAACTAAGAAGAAAAAATCAAAGCGGAGCC GGCACCAGATAGGCAGCGACCACCTTGAAGGTTGGCAGGCGGATA Found at i:11270989 original size:9 final size:9 Alignment explanation
Indices: 11270968--11270989 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 11270958 GCTCCAGTGG * * 11270968 CAGCTGCTG 1 CAGCAGCTC 11270977 CAGCAGCTC 1 CAGCAGCTC 11270986 CAGC 1 CAGC 11270990 CGTTCCACGT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.18, C:0.41, G:0.27, T:0.14 Consensus pattern (9 bp): CAGCAGCTC Left flanking sequence: Indices 11270468 -- 11270967 AATGCCAGTCTGCAAATACGAGATCCTTGACGGAGGACCATCCGGACAACCAATCCAGTTCGCCA CCATCGGACAACAAGTCTATCACAAATGGACTTGCGATTCTGAGACCACTGACACCTTCTGCGCC GTCGTTCACTCTTGCACTGTCGATGATGGTAATGGCGACACCGTTCAGATTCTTAACGAAGAAGG ATGTGCTCTTGACAAGTTCTTGCTCAATAACTTGGAGTACCCAACTGACTTGATGGCTGGCCAAG AAGCTCACGTCTACAAATATGCCGATCGCTCCCAACTCTTCTATCAATGCCAAATCTCCATCACC ATCAAGGACCCAGGAAGCGAATGTGCCCGTCCAACTTGCTCAGAGCCACAAGGATTCGGAGCCGT CAAACAAGCTGGTGCCGGAGGAGCTCATGCCGCCGCTGCTCCACAAGCTGGAGTTGAAGAAGTTC AAGCTGCTCCAGTCGCCGCTGCCGCTCCAGTTGCTGCTCCAGTGG Right flanking sequence: Indices 11270990 -- 11271489 CGTTCCACGTGCCACACTTGCTCAGTTGAGATTGCTCAGAAAGAAGAGATCTTTCGGAGAGAACG AAGGAATTCTTGATGTTCGTGTTGAGATCAACACTTTGGATATCATGGAGGTAATAAATTTCAAG TTTTAAAAAAGTTTTTAATTTTTAAAATATTCCAGGGAGCCTCCCCATCTGCTCCAGAAGCCGCC GCTCTCGTCTCCGAGGAATCCGTCCGTCGCAGAGCCACCAGCACAGGAATCTGCCTCACCCCAAT CGGATTCGCTTCTTTCCTCGGTATCGGAACAATTGTTGCCACCGCTCTCTCCGCCACCATCTTCT ACGTGGCTCGTCCAACTTCCCACAAGCACTAACTCAATGTTGTCCTTTTTAATTTATATCAATAA GTTATTTCCTAATTTATTTGCCCCACCATGATCCCTTTTTATCACCTCCACTCCATCCCCACAAC AATCGATTTATTTGTACGTAATACCGTGCAATAAACCATTTCTTT Found at i:11271143 original size:7 final size:7 Alignment explanation
Indices: 11271131--11271144 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11271121 TTTAAAAAAG 11271131 TTTTTAA 1 TTTTTAA 11271138 TTTTTAA 1 TTTTTAA 11271145 AATATTCCAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTTAA Left flanking sequence: Indices 11270631 -- 11271130 GGCGACACCGTTCAGATTCTTAACGAAGAAGGATGTGCTCTTGACAAGTTCTTGCTCAATAACTT GGAGTACCCAACTGACTTGATGGCTGGCCAAGAAGCTCACGTCTACAAATATGCCGATCGCTCCC AACTCTTCTATCAATGCCAAATCTCCATCACCATCAAGGACCCAGGAAGCGAATGTGCCCGTCCA ACTTGCTCAGAGCCACAAGGATTCGGAGCCGTCAAACAAGCTGGTGCCGGAGGAGCTCATGCCGC CGCTGCTCCACAAGCTGGAGTTGAAGAAGTTCAAGCTGCTCCAGTCGCCGCTGCCGCTCCAGTTG CTGCTCCAGTGGCAGCTGCTGCAGCAGCTCCAGCCGTTCCACGTGCCACACTTGCTCAGTTGAGA TTGCTCAGAAAGAAGAGATCTTTCGGAGAGAACGAAGGAATTCTTGATGTTCGTGTTGAGATCAA CACTTTGGATATCATGGAGGTAATAAATTTCAAGTTTTAAAAAAG Right flanking sequence: Indices 11271145 -- 11271644 AATATTCCAGGGAGCCTCCCCATCTGCTCCAGAAGCCGCCGCTCTCGTCTCCGAGGAATCCGTCC GTCGCAGAGCCACCAGCACAGGAATCTGCCTCACCCCAATCGGATTCGCTTCTTTCCTCGGTATC GGAACAATTGTTGCCACCGCTCTCTCCGCCACCATCTTCTACGTGGCTCGTCCAACTTCCCACAA GCACTAACTCAATGTTGTCCTTTTTAATTTATATCAATAAGTTATTTCCTAATTTATTTGCCCCA CCATGATCCCTTTTTATCACCTCCACTCCATCCCCACAACAATCGATTTATTTGTACGTAATACC GTGCAATAAACCATTTCTTTTGAGCATTATTTTAATGAGCCAACGATGTTTGTTTTGTTTTGACC GGTACTTTGTGAATGAACTTCTCTCTGAATCATTTTCAAGTATTCAACACTTTTTTTGTAGAATT GAGTTTTTGAGGGTTAAAATGTAAATAATTTATCTTTAAAAATTA Found at i:11275113 original size:9 final size:9 Alignment explanation
Indices: 11275099--11275117 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11275089 AGGGCTCTGG 11275099 AGTTTACAA 1 AGTTTACAA 11275108 AGTTTACAA 1 AGTTTACAA 11275117 A 1 A 11275118 AAATAGTTGT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32 Consensus pattern (9 bp): AGTTTACAA Left flanking sequence: Indices 11274599 -- 11275098 AGTTGTCAGTGAATAGTCGGTAAGCCGAAGCATGAGTTCCAGCTTTAAAATGTTTTTAAAAGTAT AAAGAAAAGCTTGGAAAAATGGTTCTAGGTGGTCCAAACCTGGCAAACACGACAATAGCATACAC ATAAGCGATCGGCAGGCAATGGCAGCTCCTTAGGCCCACGGACTTACCTACCTATCAAAGTAGCA CTGACCTACTCTAAATACCTATTCTGAACCTTCTCATGAACTAGTACCCTGAATATTATACTCTT AAATTTCCGTTCATTCCATCTGCTTATAATAGCAGAACCGAGGACTAAATAAACTTTCCCTTCTC TAATCCCCCGCAATCCCGAGAAGCACTGTGATAGGCGGCTGTTGAGACCAATTCATCAATCGCTG GACAAATTGTGATGATGCACTTGCCCGAGAAGAACTCTCGGGCAAACACTAATCTAATTATATTC AGTGTGAACACAAACGTATCTATAGTGTAATGTAAAGGGCTCTGG Right flanking sequence: Indices 11275118 -- 11275617 AAATAGTTGTTTTGGTTATCAGATTTTGAGAATTCCCCTAGTAAACGCATTACACTGTGAAGTGG AAATAATTTTAAAGTATTGATAGCAAAAACAATATTGAGTGCGATTGAGTAAAAAGTCTAGAGGG GGAGGGGGTATTTTCGAATCTAACTTATCGTTTACTCAATTTCTCTAAAAAAAGTTTCAGTTTCA AAAATTTATTTATCATACTGAAATAAGCAGTTTTGTGCAGTTTGCCCATCTGAAAATAGTTGTTT ATTTCGTTAAAAGTGCCCGAATTTCCTTTTTCTGGGCCACGTTTCAACACAAAAAAGTCCGCGTG TCCTTCTTCCCCCTTCCATCTCATCACAATCATTTCCAATTCATCTTCATCCTGATGGTGCTCTC TGGGAAGAAGACCTCCTCTGTTGACAGCCGTTTTTACAAGCGTTGGATCAACAAACACAGGAGGA TCGATGATGATGACGGTGTGACCAGTTGTTGCACACCTACCGTAT Found at i:11275851 original size:8 final size:9 Alignment explanation
Indices: 11275838--11275858 Score: 35 Period size: 9 Copynumber: 2.4 Consensus size: 9 11275828 AAATAGCACG 11275838 TTTC-TTAC 1 TTTCTTTAC 11275846 TTTCTTTAC 1 TTTCTTTAC 11275855 TTTC 1 TTTC 11275859 AATTGAAAAT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 4 0.33 9 8 0.67 ACGTcount: A:0.10, C:0.24, G:0.00, T:0.67 Consensus pattern (9 bp): TTTCTTTAC Left flanking sequence: Indices 11275338 -- 11275837 AGCAGTTTTGTGCAGTTTGCCCATCTGAAAATAGTTGTTTATTTCGTTAAAAGTGCCCGAATTTC CTTTTTCTGGGCCACGTTTCAACACAAAAAAGTCCGCGTGTCCTTCTTCCCCCTTCCATCTCATC ACAATCATTTCCAATTCATCTTCATCCTGATGGTGCTCTCTGGGAAGAAGACCTCCTCTGTTGAC AGCCGTTTTTACAAGCGTTGGATCAACAAACACAGGAGGATCGATGATGATGACGGTGTGACCAG TTGTTGCACACCTACCGTATCACCAATTGTTGCGGGATGTGATGAGGGGGTGATTGGGGCACAGA AGAAGTGCACATGTTCTCTCAGTTTGTTTTGTGATGTTTCAATTATTTTAAGAGAAAGAGTAGAT AAGTTAAAGTTCTACTTTTTTTTGGAACATTGGGAAAATTTACAAAATTCGCCATTTTTTCACAT GCTTTGTCGAGACTGTTACTTGTAAACGTATGAAAAAATAGCACG Right flanking sequence: Indices 11275859 -- 11276358 AATTGAAAATTCCGAGAAGTTGCTCAAAAACTGACTCTCTAAACACTCTAAACTCTCCGTAAACA CAAATATAATGTTTATTTTGACATCCAGATTACTTGAAAATACTTGATTCAATATTCTTTTTCTA GAAAAAAATTAAAAAATTTCGTTTTCAAATAAATCAAAATAATTTTTTACCGATCTTGCGATTCA CTTAGTGGGTCAAGAATGGAAATATATATTTAATTCCGTGTTTCCTCAGATCTCGCTATTCGATT TTCCGTTATCTCCAAAGTTATTCCAAGACGGTAATCTCATTTTTCCAGGAGGTCTTGCTAGCCTA TTTTGGAAACTATCCCGTAAACACAACCGCTGTAGTGTATCTTATTTAACCCCCAATCGAAAATT ACAGAAATTGATCGGCTTAAAATTTGACTGGAGTATTCGTCGGCGTGAGTTAAAAGGCACGTCAA AAAGAGTAATTATTTTGTCGCAAAACTTAACCGGAAGTTCTATGT Found at i:11275909 original size:9 final size:9 Alignment explanation
Indices: 11275895--11275915 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 11275885 AAAACTGACT 11275895 CTCTAAACA 1 CTCTAAACA * 11275904 CTCTAAACT 1 CTCTAAACA 11275913 CTC 1 CTC 11275916 CGTAAACACA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.33, C:0.38, G:0.00, T:0.29 Consensus pattern (9 bp): CTCTAAACA Left flanking sequence: Indices 11275395 -- 11275894 CGAATTTCCTTTTTCTGGGCCACGTTTCAACACAAAAAAGTCCGCGTGTCCTTCTTCCCCCTTCC ATCTCATCACAATCATTTCCAATTCATCTTCATCCTGATGGTGCTCTCTGGGAAGAAGACCTCCT CTGTTGACAGCCGTTTTTACAAGCGTTGGATCAACAAACACAGGAGGATCGATGATGATGACGGT GTGACCAGTTGTTGCACACCTACCGTATCACCAATTGTTGCGGGATGTGATGAGGGGGTGATTGG GGCACAGAAGAAGTGCACATGTTCTCTCAGTTTGTTTTGTGATGTTTCAATTATTTTAAGAGAAA GAGTAGATAAGTTAAAGTTCTACTTTTTTTTGGAACATTGGGAAAATTTACAAAATTCGCCATTT TTTCACATGCTTTGTCGAGACTGTTACTTGTAAACGTATGAAAAAATAGCACGTTTCTTACTTTC TTTACTTTCAATTGAAAATTCCGAGAAGTTGCTCAAAAACTGACT Right flanking sequence: Indices 11275916 -- 11276415 CGTAAACACAAATATAATGTTTATTTTGACATCCAGATTACTTGAAAATACTTGATTCAATATTC TTTTTCTAGAAAAAAATTAAAAAATTTCGTTTTCAAATAAATCAAAATAATTTTTTACCGATCTT GCGATTCACTTAGTGGGTCAAGAATGGAAATATATATTTAATTCCGTGTTTCCTCAGATCTCGCT ATTCGATTTTCCGTTATCTCCAAAGTTATTCCAAGACGGTAATCTCATTTTTCCAGGAGGTCTTG CTAGCCTATTTTGGAAACTATCCCGTAAACACAACCGCTGTAGTGTATCTTATTTAACCCCCAAT CGAAAATTACAGAAATTGATCGGCTTAAAATTTGACTGGAGTATTCGTCGGCGTGAGTTAAAAGG CACGTCAAAAAGAGTAATTATTTTGTCGCAAAACTTAACCGGAAGTTCTATGTCGGCTCAATAGT GTGTCTCTTACATAATCCCTTCCAATTAGACACCTCACTGCCACC Found at i:11276004 original size:8 final size:8 Alignment explanation
Indices: 11275991--11276006 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11275981 TTTTTCTAGA 11275991 AAAAAATT 1 AAAAAATT 11275999 AAAAAATT 1 AAAAAATT 11276007 TCGTTTTCAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (8 bp): AAAAAATT Left flanking sequence: Indices 11275491 -- 11275990 ATCCTGATGGTGCTCTCTGGGAAGAAGACCTCCTCTGTTGACAGCCGTTTTTACAAGCGTTGGAT CAACAAACACAGGAGGATCGATGATGATGACGGTGTGACCAGTTGTTGCACACCTACCGTATCAC CAATTGTTGCGGGATGTGATGAGGGGGTGATTGGGGCACAGAAGAAGTGCACATGTTCTCTCAGT TTGTTTTGTGATGTTTCAATTATTTTAAGAGAAAGAGTAGATAAGTTAAAGTTCTACTTTTTTTT GGAACATTGGGAAAATTTACAAAATTCGCCATTTTTTCACATGCTTTGTCGAGACTGTTACTTGT AAACGTATGAAAAAATAGCACGTTTCTTACTTTCTTTACTTTCAATTGAAAATTCCGAGAAGTTG CTCAAAAACTGACTCTCTAAACACTCTAAACTCTCCGTAAACACAAATATAATGTTTATTTTGAC ATCCAGATTACTTGAAAATACTTGATTCAATATTCTTTTTCTAGA Right flanking sequence: Indices 11276007 -- 11276506 TCGTTTTCAAATAAATCAAAATAATTTTTTACCGATCTTGCGATTCACTTAGTGGGTCAAGAATG GAAATATATATTTAATTCCGTGTTTCCTCAGATCTCGCTATTCGATTTTCCGTTATCTCCAAAGT TATTCCAAGACGGTAATCTCATTTTTCCAGGAGGTCTTGCTAGCCTATTTTGGAAACTATCCCGT AAACACAACCGCTGTAGTGTATCTTATTTAACCCCCAATCGAAAATTACAGAAATTGATCGGCTT AAAATTTGACTGGAGTATTCGTCGGCGTGAGTTAAAAGGCACGTCAAAAAGAGTAATTATTTTGT CGCAAAACTTAACCGGAAGTTCTATGTCGGCTCAATAGTGTGTCTCTTACATAATCCCTTCCAAT TAGACACCTCACTGCCACCTGCCGTCGAAACTTTTCTCATGGGAAGTCATCGTTTTGTTCTTTGA TCGCATTTGACCGCTTGGGTCAATTTTAGGATTACCAGGTTTTTC Found at i:11277132 original size:7 final size:7 Alignment explanation
Indices: 11277120--11277133 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11277110 AAGGACTTGT 11277120 TCGTGTG 1 TCGTGTG 11277127 TCGTGTG 1 TCGTGTG 11277134 ACACCTGATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.43, T:0.43 Consensus pattern (7 bp): TCGTGTG Left flanking sequence: Indices 11276620 -- 11277119 GAAAAATATGGATTTTTGAGCAGTCAGAACCATCAAAACCAGAATTTTTACCGATTCAGATAATT ATTTTTTAGAAAACGATAGTACTTTTGCTTCCTTTTTGGAGCAGCTCAACAAAGTATTCTTCCCC AAAATCGGTCAACCTAATTACTCCGGTGACCGTATCCTTTTTCTTCCAGCAAAAACCGATATCTA TGTATGTCTTCGAGCCTGGGAAAAAAGCGACAATTAGCGGGACAATTGAATGGAAACGGAAGAGA CATGGCGGCAGGTTAAAAGACGGTATCATGTCAGCGCATCATTGTGAAACTTGGCGTGTTGTACC TATGTTTCTTCATGAAGACCCCATATACATACACACACTCACGCACTCGACCATTTAAGATTCCT GTCGCAGATAACCGTGTGTGGGGGCCTAGAATGAAGATGGATCGATTTTAGGGCGCCGGTGAGCG GGAGAAGCAAAGTGCTTATGTTATTGTGGTGGCGAAAGGACTTGT Right flanking sequence: Indices 11277134 -- 11277633 ACACCTGATGTGTGAGCGGCGTCGGCGGCTCCTGCGAGCAGTTAAAGTCTTTTGGATGTGTTCAA ACGGATGCCGACAAGTTTTAGATGAGTTTTGCATTTTTACCGCACTTTGATTATTGTTAAACTTG TGATATGATAAACGTCCGCCTTTGAAGCTTTAAAATTCGAAATTTTCGGATTCATTTAGTTTGCA GTAAATTTTTATAATTTTTTTTACAGAAACGAAAAGTTAATTCACAGTTCCGAAAATTTTGAAGA TCTATTTGTTTTTGTAAAATTGAAAGTGGATCAAGCTATCCCTACTAGAACTCCGATTCATCTCA CAAACTTTTCTTATCTGTCTCCCACGCAGGCCTCTAAAACGCCAACTTTCTTGCCTACTAGATAG GCGGGAAGGTAGCCCGTCTTGTAGGCAAACAGGCAGACATCTCTATTTTTTGAAGCTCGAAATTT CCAACATCTCTGAATCTTCCCTATTTATTCCCAACTTTGCCCAAA Found at i:11278027 original size:8 final size:8 Alignment explanation
Indices: 11278010--11278033 Score: 34 Period size: 8 Copynumber: 3.0 Consensus size: 8 11278000 AAAAAGTCAT * 11278010 TTTGAAAA 1 TTTGACAA 11278018 TTTGACAA 1 TTTGACAA * 11278026 TTTGCCAA 1 TTTGACAA 11278034 ACTTTTAACT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38 Consensus pattern (8 bp): TTTGACAA Left flanking sequence: Indices 11277510 -- 11278009 TGCCTACTAGATAGGCGGGAAGGTAGCCCGTCTTGTAGGCAAACAGGCAGACATCTCTATTTTTT GAAGCTCGAAATTTCCAACATCTCTGAATCTTCCCTATTTATTCCCAACTTTGCCCAAAACTCCT TGAAAACCCCCAACATATAAGTAATGGGTCGGAAGGCATGAGCGGTGTTTATGGCCTTGTAAATC TTCGGTTATTTGCTGATATTGGTATTGGCGCCTACCTAAAGTTTGACATATTTAGGGGGTTTCTA TGAAGGAGGGCCAAACTGGTTATACCGATTTTGATATTAAAAGAAGACTGTAGAAAAAGGAGAAG AGAAGGAGGTTTTACTCATTGTTTTAAAGTAGTTTCTTTTTTTTCAGGACATAGGAGCCATTAGA CCGCAGCTTATAGTAGTTTAGAAATATCAGAAATTACTTCCGCCAACATTTAAAAAATTATGGAG TATCAGAGCTACCGTAACTTTAAAAAATAATTTTCAAAAAGTCAT Right flanking sequence: Indices 11278034 -- 11278533 ACTTTTAACTAATAGTTTCTATGTATAATCTAAAAATTGTTGGAGTGATCAATTTTGAGTTTACG TAACTCATATAACTTTCTGTACACACCTGACAATCAGTCAAAACCCGGCTCTAATATTTTGGTCA ATTATCTTGTCTTTTTCTTATTGGGTCTTACCACGATGCATATCATTTTGAGATTTAGTATTTCA CCCCATTGTTCAACTTTGACATTTTATATCTCAGTTGTCGTTTGTTCCACACAAAAATTGTCAAC TTACAAAATATTTGTTATTTCTTTTTTTAAATCATTTCCTAGTTGATAATTTATTTATATCTTCA AAATAAACAAAGATATAACCTATCAAATAAAGTAGTCAAGTGCAGTACAAATAGAGAATATACGG TGGGTGAATCTCTTGAATCTTCTTCAAAAAAACTGAAAGTGAGTGGTATCTCTTGAACAACTCAT CCTAGATCATCCCCAATTTTTCCAGCTGACTAACCATACGTTCAA Found at i:11278987 original size:7 final size:7 Alignment explanation
Indices: 11278972--11278987 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11278962 AGTGGTTAAC * 11278972 CTGATTT 1 CTGAGTT 11278979 CTGAGTT 1 CTGAGTT 11278986 CT 1 CT 11278988 TTCAATTCTA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.12, C:0.19, G:0.19, T:0.50 Consensus pattern (7 bp): CTGAGTT Left flanking sequence: Indices 11278472 -- 11278971 TCTCTTGAACAACTCATCCTAGATCATCCCCAATTTTTCCAGCTGACTAACCATACGTTCAACAT CTACCCAGATTTAAATCTAAATACATACACATTGTTTCTCACTTGTTTTAAACAAGTCCTACAAG ACGCGTGTCACACTTGTTGCCTGAGATTCTTGTCACTTCTCTGAGCACTCTCCCCATCATCTCAT CATTTTTTTCGCTTTGCAAAGTCCAGCGGAAATCAGTTTTAGAAGAAATGTCGTTTGCAAGTTTT ACCTGATCCCCCAATAACAAGTGCAATAACAATAAACTAGTGTTTGGGGGGGATGGGCAGTTCCC TACCCAAATTTATAGCCAATCTCCATTGATTACCGCTATCATTCTGTCCTGAAATAATGCGTCTC ATTCAATAGGGGGTAATTGCAAATGGCAATGAAATTGGGTTTGAACTTTTGCTACTCAAACATGG GTGATTTTGAACATTTTACTGAAAACTGATCCTAGAGTGGTTAAC Right flanking sequence: Indices 11278988 -- 11279487 TTCAATTCTAAAAATAATAAAAAATAACTCAAGATTTTGGTTTTGTGAAAAAAATATAAAAACAC GTGAAAAACTTGTTTGTAGTCATTTTGCAAAAAAAAAAGTTGGTTTTTGAGCACAATGTTCAACA AGCTTTGGGTGTAGGTAGGTATGAGGTAGGCCTGTCCATTAGGAAAGTATCAGTGTTCATTACGT CTACGCCGATGTTATATGGCACCTGCCGATTTGATCAGGGCTTGAATATTAGAAGCTAATTTTGT ACTTTTTGTCTAAAATGGTTCTAATTATTTATTAAAATACCTTGGGTAGAATATCGAAGAGCCCA ACTGGTCTCATGTCTCGCCGGAAAACGCGTCCTTTAGTTACTTGCGATCATATTTTTATGCTATT CGAGTTCCTTTTATGCTATTCGAGAGCTATTCGAGGAGCTACTCTTCTATTTTGGCTCTGATTAT TTTTTGTCACTGTTAGAATTTCTATAGGCACGACTGACGACCGCT Found at i:11279875 original size:7 final size:7 Alignment explanation
Indices: 11279861--11279877 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11279851 TTGTCTTTTG * 11279861 ATTGTCT 1 ATTCTCT 11279868 ATTCTCT 1 ATTCTCT 11279875 ATT 1 ATT 11279878 TACAAATTGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59 Consensus pattern (7 bp): ATTCTCT Left flanking sequence: Indices 11279361 -- 11279860 CATATTTTTATGCTATTCGAGTTCCTTTTATGCTATTCGAGAGCTATTCGAGGAGCTACTCTTCT ATTTTGGCTCTGATTATTTTTTGTCACTGTTAGAATTTCTATAGGCACGACTGACGACCGCTTTT TTCCCGGAAAACGCCCCACGTAAATTTGCACGCATACTTTTGGTTGGGAGCCAGTGGGGCGAGGA TCCTCCCCTTCACGTAACACCTCAGTCTTCCGAGTAGGAACAAAATCGCAAAACTTTCGTGGTAA GACCACCGGCACCCCATAAACATTTATTAAGTAACACACACACAATTAATGCGTTCCTTCCCACT GCCAATCTTCTTATCAGAAAGATGAAATGACCGTCTCAACCGAGCCTGTGTGTCTATTTGTGTGT GGCCTTTGTAATAGTTACCACCTAGCTGATAACCGAGAAAGTTGGATTACCTCATGATTCCCTCA TAAATTTGCCGACAGGTTCTTTAACGAAAACATATTTGTCTTTTG Right flanking sequence: Indices 11279878 -- 11280377 TACAAATTGATAATTGGGAGAATGCCACCCAGAATTAGTCGATTTAAAATTGAGTATGATCTACA TAGATCTGAGTAGTGGTTGATCACAATGATATAATTATTATATATTAGTATCATTTTCTCTTTCT CTCTCTCTCTAAATTCACCCTGTCATCAGTGATGATTCTCAGTTTCGAGCGGCGGAGGGGCGAGC GTGTGGGCGGAGCCGCGTGTCCAATGAGCGTGGGGCGGGGCGGTCCAATTACCGGTGTTTTCTTT CGTTTATTCGCTTTTTGTGACTATGACACCAAAACGGAAGAATCAGTGGATCAGGCAAAAATATT ATTATTAGAACTAATAGTTGGATTTAGGTTGGGTATCATTCTGTACCTATTTCACCTGATTTCTT GTGCTTCACTTGATCTTTGTCTTTATTATTATTGTTATTATTGTTGTTGTGCTCCTTGTTGTGCT CCTTATAAATCCCGTAAACTCTAAATCTAAATTGTTATCTAATAC Found at i:11280307 original size:9 final size:9 Alignment explanation
Indices: 11280293--11280312 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 11280283 TTTGTCTTTA 11280293 TTATTATTG 1 TTATTATTG 11280302 TTATTATTG 1 TTATTATTG 11280311 TT 1 TT 11280313 GTTGTGCTCC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70 Consensus pattern (9 bp): TTATTATTG Left flanking sequence: Indices 11279793 -- 11280292 TGGATTACCTCATGATTCCCTCATAAATTTGCCGACAGGTTCTTTAACGAAAACATATTTGTCTT TTGATTGTCTATTCTCTATTTACAAATTGATAATTGGGAGAATGCCACCCAGAATTAGTCGATTT AAAATTGAGTATGATCTACATAGATCTGAGTAGTGGTTGATCACAATGATATAATTATTATATAT TAGTATCATTTTCTCTTTCTCTCTCTCTCTAAATTCACCCTGTCATCAGTGATGATTCTCAGTTT CGAGCGGCGGAGGGGCGAGCGTGTGGGCGGAGCCGCGTGTCCAATGAGCGTGGGGCGGGGCGGTC CAATTACCGGTGTTTTCTTTCGTTTATTCGCTTTTTGTGACTATGACACCAAAACGGAAGAATCA GTGGATCAGGCAAAAATATTATTATTAGAACTAATAGTTGGATTTAGGTTGGGTATCATTCTGTA CCTATTTCACCTGATTTCTTGTGCTTCACTTGATCTTTGTCTTTA Right flanking sequence: Indices 11280313 -- 11280812 GTTGTGCTCCTTGTTGTGCTCCTTATAAATCCCGTAAACTCTAAATCTAAATTGTTATCTAATAC TTTTTATTGGTTACCAATAATATTACTTCTGCCAAAAGAGGCAAAACGCCGCGTTTCAAAAAATG AAAATTTTTATCTGTTGTTCATCACTGTCAAATTTATGATTATTAATATTTCTCACCATTCAAAT TAAAACTTTTGCTTCAAAACTACATAAAACATTCAAAAACTTGAAACAAATTTTATTCGATTTTT GCAAGTTTTTTATTTAAAAAAAATTATACCGTATTTTCCCTAGCATTCATTTTGCTCATATCTCG GTTGTCCCAAGTTTTATCAAAAAAATTTTAACTGTCATAATGTAGAAAAATAATTTTTCCATAGT TTGTAAGTTGACAATTTTTTGATAGAACCAGAGAGAATCGAGATATAAGCTGTCAAAGAAGAGCA AGGTGCATGCAAGTCAAATAGGAAAATAGTGGGTTTTCCGGTTTA Found at i:11280971 original size:8 final size:8 Alignment explanation
Indices: 11280954--11280971 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11280944 TGAAACTCTT 11280954 TTTTTAAA 1 TTTTTAAA * 11280962 TTTTTTAA 1 TTTTTAAA 11280970 TT 1 TT 11280972 GCTTCTCATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72 Consensus pattern (8 bp): TTTTTAAA Left flanking sequence: Indices 11280454 -- 11280953 CTGTTGTTCATCACTGTCAAATTTATGATTATTAATATTTCTCACCATTCAAATTAAAACTTTTG CTTCAAAACTACATAAAACATTCAAAAACTTGAAACAAATTTTATTCGATTTTTGCAAGTTTTTT ATTTAAAAAAAATTATACCGTATTTTCCCTAGCATTCATTTTGCTCATATCTCGGTTGTCCCAAG TTTTATCAAAAAAATTTTAACTGTCATAATGTAGAAAAATAATTTTTCCATAGTTTGTAAGTTGA CAATTTTTTGATAGAACCAGAGAGAATCGAGATATAAGCTGTCAAAGAAGAGCAAGGTGCATGCA AGTCAAATAGGAAAATAGTGGGTTTTCCGGTTTACAAATTCGCATAGTTTTGAATTTTTTACAGA GTTTTCACCATTTTAGAGAATTGCTCACATTTTCTGAATTTTTTTTTCAAAAAATTAACTGGTAC CTAAATTGAAATTTAAATATTTTGAGCAGAAGAGGTGAAACTCTT Right flanking sequence: Indices 11280972 -- 11281471 GCTTCTCATATTGATACTATTCTCTTTTTGTGCCAAAACTTCTAATCAATGCCCCGCTCCTTTCA AATCCTAAAGTTCCACTTAAAAACTGAAGAATCAAAAATCTTGAAACCTGTACTGTATGTACTCT TCCAAAAAACCACCTCCGTGCTTTTCATCATTTACAACTTGTCTCCCAGTCCTCGTCCGCAACTT GCTTTTGATATATTTTTTTCGACTTCTTCATTTCAACACATACCTACACACACAAAAAAAGTTTG CGCTAACACATGTCCGCCCGTCATAAATCTACAGTAATCTCGGAGCTTTCTTTCTCTCTCCTGAT GCTCCCACACCACTCTGTCATTTTTCAATTGTTCTTCTCTTGGAAGCTCATCTCTCGTTTTCATT TGATCCTGCTAGAAGACACTTGATATGTTGTTTGTGTTAACTAAGATAACTGATATTGTTGAAAG TGATAGCTTTGCTTTGCTTTTCAACTTTTCGTGTTCCTCCTGCTC Found at i:11281836 original size:9 final size:9 Alignment explanation
Indices: 11281809--11281836 Score: 33 Period size: 9 Copynumber: 3.0 Consensus size: 9 11281799 TATGAAAATA * 11281809 TTAGCTTTT 1 TTATCTTTT 11281818 CTTATCTTTT 1 -TTATCTTTT * 11281828 TTATGTTTT 1 TTATCTTTT 11281837 ACTTTTTTTC Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 9 8 0.50 10 8 0.50 ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71 Consensus pattern (9 bp): TTATCTTTT Left flanking sequence: Indices 11281309 -- 11281808 CTCTGTCATTTTTCAATTGTTCTTCTCTTGGAAGCTCATCTCTCGTTTTCATTTGATCCTGCTAG AAGACACTTGATATGTTGTTTGTGTTAACTAAGATAACTGATATTGTTGAAAGTGATAGCTTTGC TTTGCTTTTCAACTTTTCGTGTTCCTCCTGCTCTTTTTTTTGACAGCTTACTAGTACCGAGTTCG GACCCCTGCATAGTACTACAAATATTATATTAATATGAGAATGATATACCCTTATTATCCCCCCA CGTACTCTTGAGAATCATTAGTATGTTTCAATGTTTCGCCAACAATGGATTGGTATCATCTGCCC TTACCTACCGTACTCCCTCAAGTGCTCCCTCATCCATGATTACCGTACTCCCCTACTCTCCTCCC CCTTCTATCCGATTATAACATTTTTATTAATAATTATTATTGTCTGGTGTCTCGCGATGCCATCT CTATCTTACGATTTCGCTTTGAATTTTGATAACGCTATGAAAATA Right flanking sequence: Indices 11281837 -- 11282336 ACTTTTTTTCATAATTTTTTCATCAACTTACTTGCAGAAACTAACTAGGTAGACACCGGTAACAA TGCTCTTTTCCATGGAATCAATTCTATCAAGTACCAAGCCAAAACTGGAGCCACCTCCGAAGCTA GAGCCGGAAGTGACAATCAATGAGCAAGTGGTTGATCTGCCGCGGAGCAACACACGGCTCTCCGA GCCATCAACTTCTGCGTCGGTTCTTGAACATGATTTGAAGTTTGGGGAGTCCCGAAAAAGAAGTC GGTCTCTTGGAGACGAGCCCACGGAAGATGAAGACGGCGTTCCAGTTCGGAAGGCAAACAAAAGA AATCATTCAACTTCAAGTGCTGCAGATAGCTCATCTGATGATGCGAAGGATGATGACGACGATGA TGATTCTACATCGTAAGTTGGGAACTTGGGAAAAACTTAGGAATCTTAGAAGAAATTCGATTTTT CTCGACCTCGACCTTTTAGGTCCTTTTATACAAAAAGTTTGTATG Found at i:11282761 original size:7 final size:7 Alignment explanation
Indices: 11282749--11282762 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11282739 CATCGCGATG 11282749 TCAATTC 1 TCAATTC 11282756 TCAATTC 1 TCAATTC 11282763 ACCGGAGAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43 Consensus pattern (7 bp): TCAATTC Left flanking sequence: Indices 11282249 -- 11282748 AACTTGGGAAAAACTTAGGAATCTTAGAAGAAATTCGATTTTTCTCGACCTCGACCTTTTAGGTC CTTTTATACAAAAAGTTTGTATGCTCAATTTTTGTGAAACTTTGATCTCCGATATTTTTAAGTCT ATTAGACATTGTTCAACTACCGTATTTTCCCTGTATGACTTGCATTCTCTTTACTCTAACTTGAC GGTTTATATCTCGGTTGTCCTAAATCTTACCAAAAAAGTTTAACTGTAAAAATGTAGAGATATAT TTACATGCATTTTGTCAGTTGACAATTTTTGATGAGACCAATAAAAACCTAGATATTGGCTGTCA AAGTAGAGAAATAGGTAGAGCAATATACCTATAATATGTACAGTGATATGTACAATAATATGTAC TGTGTAAAACAACTGTAACTCTATAATTTTGCAGTCGAAAATCAATGTCTGGTCACCGAAAGAGC AGTCACGCAAAGCCACCGTACTCCTACATTGCACTCATCGCGATG Right flanking sequence: Indices 11282763 -- 11283262 ACCGGAGAAGAAACTGACACTTTCGGAAATTTGCGAGTTCATAATCAATAAGTTCGAGTATTACA AGGAGAAGTTCCCCGCCTGGCAGAACTCGATTCGTCACAACCTAAGCCTCAACGACTGTTTTGTG AAGGTGGCTCGGGGGCCTGGGAATCCGGGAAAAGGAAACTATTGGGCGCTGGATCCGAACTGTGA GGATATGTTCGACAATGGATCGTTTCTGCGCAGAAGGAAGAGGTAAGGGGAGCACAGGAGAAAGT ATTACAACCTGACGGGGAGTAGTAGCCGGCGGCGGGGTGAGCACACATACGAGATGTGAAGAGAG GGAAAAGACAGTTGTTTCGATAATTTGTCACCAATTTGTTGTCATTAATCGCACCCTCGAGGGTA GTGGAGAAGCCTGGGAAAAGAAAACTTTCGGGGTTAACAAGGGAATTAGTGAGATAAATTTTCAA TTCAAACACTTAATAATTTCAGATACAAGAAAAACAGTGACACAT Found at i:11283723 original size:7 final size:7 Alignment explanation
Indices: 11283711--11283724 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11283701 TCAATCGTGC 11283711 AATCAAT 1 AATCAAT 11283718 AATCAAT 1 AATCAAT 11283725 TTTTTGTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): AATCAAT Left flanking sequence: Indices 11283211 -- 11283710 TTTTCAATTCAAACACTTAATAATTTCAGATACAAGAAAAACAGTGACACATATCACGAAATGAT GTCCCATCATCCGATGCCATTCCCTCCATTCCTCCCGCAAGGAATGCCCTTTCCTCCAAGAATGA TGCACCCGATGGCTAACATTCCCATGCTGGGACATCCAATGAATCCAAGAGCAGTTCCAAACATG CCAGCGTTCTTCATTCCACAAAATATTGATAGCCAGAAGCTCTTGTCAATGATGGCTTCGAGAAT AATGCCAATGGATGCTCCAGTCAGCTCTGGCCAGAAGAGAACTTCATCGAGCTCCTCACCAAATG AGAATGGATCTTCGGCAGTTTCAGATAAACTGAGCGCTTAGAAGAACACTCAATTTCCTTGTTTA ATTTTTAACAATTGTTTCCTATTTGCTTAACCTTTTCTAGTCTCTTGTTCCTTTTCCGTTCCCCT TCAATTCCTTTCAGCATTCTTCATTTCCCCTGATCTCAATCGTGC Right flanking sequence: Indices 11283725 -- 11284224 TTTTTGTTAATCCTCCTGCACGTGGTACCACAACTTCATTTCTTCAACTGATCTTCCCTTTTCTT TTTTTTCTTTGTTTCATTATCTGTGAAAGAGCTTATGTCGTAAATAATTCGAAAATATATATGTC CATCGTCAGCATTTTTGAAGTTAAAATCACATTAATCAATTGAGCAAACAGTAAGATGAAAGGAG ACCGCAGAAGCTGCTGAGCCGATTAAAAGACTGAAATTGATAAGGGAGGGAAGTGACAAGACTGC TGCAGAGTTACTAGTCTGCAAAATGTCATGAATCCAACAAAAAATCAGGGTTCAGAAGACTAGGT TTTTAGTAGAAAACATACCGAATTTTTCAATTAGTCTTGCACCAAATTTGCTCTACTTTGGCAGC TCATATCTCGGTTGTCTTCAATTTTAACAAAACATTTTCAACTGTAAAATCATAGAAACATATAT GAAAAATATTTCTACTGTTGAAATTTTCGTGATAAAACCAAAAGC Found at