TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:8242575 original size:7 final size:7 Alignment explanation
Indices: 8242560--8242575 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 8242550 AAAATACAGT 8242560 ATTTATG 1 ATTTATG * 8242567 ATTTTTG 1 ATTTATG 8242574 AT 1 AT 8242576 CGACCATTAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62 Consensus pattern (7 bp): ATTTATG Left flanking sequence: Indices 8242060 -- 8242559 ACTAAATTCAATGGTTGAGCAAATCCAAGTTCAGCGGAAATGCTTTTAAATGGTTTTTTGAGAAC ATTTTGTGATTGTGCAGATATAGATTCTAGACATTTTGGAGATGAAACTAGTTGTGGGGCACATG AGGTTGGTGGAGTTGCCGGTTTTTGAATTTTCTGTGCAGGAGGATGAATTGGAACTTCTGTCACC CACGAATCCGGACAACCAATCGTTTTCTTTAAATATATTTTATTTGGAGGTTTCATTAAATGCAA TTTACCAAAAAGTTGACTCAAAATTTATAAACAATTTGAAATTTTAACGTGTTTTCGCTTTTCTA GGCAATTGTAGTGCCTTGGTGCTTTGATTAGTTCAGTTTGTGGAACATCAAAGTGAGTAAGTAGT TTGAGCCACTGGGGATTTTGTAAACACATTAGCTTAAAAGTACTATTCCTAATTTAGAGTTGTTT CCTACAGTAATATCATTCCAAAATTACAATTTTATAAAATACAGT Right flanking sequence: Indices 8242576 -- 8243075 CGACCATTACATAAAGAATAACCTGTCATATTATTTTTATTGCCAAAATAATTATTACTCAAGTT TTTCTAATCTCGGGAATATTTATATAATTAGAAGCTAAATGTTGCCAAAAGCTTGACCTACCAAA ATAGATTGCAAATCGAGTCCTCGCATTTTGAGAACTTCCAAAGTTTGATTGTAGATGTTAACTTG AATATAAGTTGACATTTTTCAGTAAATACCAACTTGTCGAGTTGCAAAGCAGGAATGAATCAATG ACACAGCTGGGCAGACCACAAAGTAAGAGACTCGAAACGCAGACGGTTCTAAGCAGCGCCGACTC ACTCCTTCTTTTGCATTATATCTTGTGTCTCACTCGTGCGTTCTTGCCCTGTGTGTTTTCGCTCT CTGCATTTTTCTCTCTATTTTGTAGTTTGCGTTGGACGCCGAAATGTAGTCATGTTGTAGACTAC AACATATAAGTGGAGGAATATTTATCAGATTACCGGGATGGTAAA Found at i:8244197 original size:7 final size:7 Alignment explanation
Indices: 8244185--8244199 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8244175 GCGTTCAAAT 8244185 GCACATC 1 GCACATC 8244192 GCACATC 1 GCACATC 8244199 G 1 G 8244200 AACTATACGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.40, G:0.20, T:0.13 Consensus pattern (7 bp): GCACATC Left flanking sequence: Indices 8243685 -- 8244184 GATGTTATCATTCCTGAATTAAGAATTATTATTAAAACAAAGACAAATACTGGCTTACAAAATTT GAATCTTCTCTGCGTCACGTGTAAGAATGTTGATGTCGTTTTGGGTCATTCTAGTATCACTTGCC ACGATGGCAAAGTTCTCCCCAGAAATGGCACAGGTTGATCCTCCCTCCATTGAATACGGGTTCCA GCGTTGACGCTCAATTTGTCTGGAACTCATCCACTCTGGATGAGCTGCAACTTCCTTCATTGCCT GCTTGAACATTGCCATTTCATTGGTGGCGTTGGCGACAGCCGTGATTCCAGTGAAGCTTGTCATC TGAAAAAGGCGTATACTTATTTAGTTGAAACAATATAAATATTCAATATGACAAAATTCAATTAA TACAGAAAACAAATGCTCGAAATTTGAGAATTCAACATAACAGGAAATGCTGACAATGAGAGACA TCGTCATTTACAATGTTTAGTCCGCAGTTTTCTGCGCGTTCAAAT Right flanking sequence: Indices 8244200 -- 8244699 AACTATACGACACTTTGCTGAAATTTATTGAAACGCGTTTTCCTCTCTTTTTTGAATGAAAATTC ATTTTTCCAAGGTATTTTTGAGGACAATTCATCGCTTTATCTACATTTCTGATTAAAATTTTTGT GATTTCTTTTTTTCAATAATTGATATTTCAGATGGCAGATTTCACAGAGCAAACTTTGCGACAGA AGTTAACAAATTTATCAAACCACCCTTCCTCAATTCAGACGACTTCTGCCTGGCTTTTGCAAAAT CATAGCAATCGGGAATTGATCATTCGAGTTTGGCTAAAGGTATTTTATTCATATTGTATCATTTT TTAGTGTTGTATTTCAGACAGTAAAGAAAGAAACACACGGCTCAAAAATTGTAAATCTTCTTTAT GTGGCGAATGATGTAAGCCAAAATGCGAGAAAGACTTGCCCACAATTCAAGGACGAATTTTTTCC CGCAATAGAAAGTTCTTTCAGGTATTGGCATTTTCAAACGTCTAA Found at i:8244899 original size:7 final size:7 Alignment explanation
Indices: 8244883--8244899 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 8244873 CCGCAGTTGC 8244883 GAACAAG 1 GAACAAG * 8244890 GAACATG 1 GAACAAG 8244897 GAA 1 GAA 8244900 AGGTGTGTGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.53, C:0.12, G:0.29, T:0.06 Consensus pattern (7 bp): GAACAAG Left flanking sequence: Indices 8244383 -- 8244882 CTTTGCGACAGAAGTTAACAAATTTATCAAACCACCCTTCCTCAATTCAGACGACTTCTGCCTGG CTTTTGCAAAATCATAGCAATCGGGAATTGATCATTCGAGTTTGGCTAAAGGTATTTTATTCATA TTGTATCATTTTTTAGTGTTGTATTTCAGACAGTAAAGAAAGAAACACACGGCTCAAAAATTGTA AATCTTCTTTATGTGGCGAATGATGTAAGCCAAAATGCGAGAAAGACTTGCCCACAATTCAAGGA CGAATTTTTTCCCGCAATAGAAAGTTCTTTCAGGTATTGGCATTTTCAAACGTCTAATCTCAAAA TTAATTTCAGGCATGCAATCGAGTTGAAAAATGCAAAAGAAGTGGAACATGCAATTGGTAAACTG ATCAATGTATGGAAAGATCGTCAGATATTCACTCCATCACAATGCAAACGGCTTCATGAAGTTCA TCAACAAGTTAAGCTATCTGGAAGCTTCCCAACACCCGCAGTTGC Right flanking sequence: Indices 8244900 -- 8245399 AGGTGTGTGAATTTAATAAATTCCAAAAGAATGCCAAAATGAGCTTAAGGTCGCTCAACCTAGTC AGTTCGTCGTTGAAGAAGCGAAAAAGAATGCACAAGATGTTTTGCTCAGTTTGAAGCGCCTTCAA AACCCGCCGAGCACGGAAAGAGAAATTCGCACAGAACTTTCAAAATATCCGGATAATATTTCGTG CCCAGAAAAGTTGCAGTCAGTTCGAAGTTCGCAAGAAGCACAGTCTCTGTTGGTCCAAAATGAAG AAGCTCTTCCGATGCTGGAGGAATATGTTAAAAGGTTTGATTGAAACTTTTGTGAATTGATTTTG TACATTAACTTATGCTTTCAGGCTGAAAAACGAGACAAATGAACGCGAAACTCTCGAATCGAACT TGAATATGCTTATAGAAAATGTTAGAATGAGCATTGAACATCACGAGAAATTGTGCAGAGAAGTT AAGCGTAGAGAAGATCGAATCAAGGCAGATTTGTTAGAGGTTTGA Found at i:8249351 original size:9 final size:9 Alignment explanation
Indices: 8249330--8249355 Score: 31 Period size: 9 Copynumber: 2.9 Consensus size: 9 8249320 TAGTTCCTCT ** 8249330 TCTTTTTCG 1 TCTTTTTTA 8249339 TCTTTTTTA 1 TCTTTTTTA * 8249348 TCTTCTTT 1 TCTTTTTT 8249356 CTTTTCTTCT Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.04, C:0.19, G:0.04, T:0.73 Consensus pattern (9 bp): TCTTTTTTA Left flanking sequence: Indices 8248830 -- 8249329 AGGCATTGCTGCTCTGAACTTTTTGATTTTTTCAATGGTTTCTTTGGAACGATAAGGACCACTGA ACACGGATACCTTGTTCTGAAATTGGATGATTAGAAGGATTTACTACAAATTTGAATATTTACTG GAGCATTTTTGACGTTCAGAAGTTCAGCTGAGAACGGTTCATCACTGGCATCCCACTCTCCTTCA GTGCATTCTGGCAGCTGTTCGCCCTTATCTGGAAATTAAACTTTGTATTGTCCAGATGCGAAAAC TGTAAAATAGCTTGGAGTTGGGTTACTGTAGTCCTTAAAGCCATACGCCTGTTTTCTAACTAAAA ACGCTGCCTAAAAATATTTCGGTCGTGTCGAGACCGGGCACCGTACTTCTCAGCGTAAACTAACA AAATTTCGCATCTGTGTAATATTGAAATTTCATCCTTACCATCATCAGTAATTTGAATCTTCGGC AACTGTCGAATAGATTGCTGAACACTTGGTGCTGGTAGTTCCTCT Right flanking sequence: Indices 8249356 -- 8249855 CTTTTCTTCTTTGCTTGGTTGCTGCTCTGCCATTTTTTGCCTCTTGATTTTGATTTTATCGTTTT GAAGAATAAAATTATTTCCTTTTCAAAAGATGTTTTTTCTTAATTAAAAGATTTCGAAAAAAAAA TGCAATACACGTAATTTTGAGTTTTCACTTATGGAAATGTATTTTACAAATCATTTTCAAATACA AGATGGACAACAAAAAGAAGGAAGAAAATCCTAGTAAATCTGATACTTCTATAAGCCGTGAGTAA TATATATAACTTTTCGGTTTTTTTTTTAATAAAAAGTTTTAGTTCCACCAAGCTCAACTGGAGAA GCGCTTCAAAATTATACAGAATCGGAATGGAACGCATCAGATGATCCGTATTCTGCAGAACTTCT CAATGTGAAAAAGAAGCCGGTAATTTTTATTTTTACGTAGATTTTCATTAAAACTTTTCCAGAAT CGAGTTAATGTGTTCTCAGCAACTGAGAAGAACATGGAAACTATA Found at i:8250459 original size:7 final size:7 Alignment explanation
Indices: 8250447--8250468 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 8250437 GCCTTCGTTT 8250447 ACTTTTC 1 ACTTTTC * 8250454 ACTTTTTT 1 AC-TTTTC 8250462 ACTTTTC 1 ACTTTTC 8250469 CCATTTAACG Statistics Matches: 12, Mismatches: 2, Indels: 2 0.75 0.12 0.12 Matches are distributed among these distances: 7 6 0.50 8 6 0.50 ACGTcount: A:0.14, C:0.23, G:0.00, T:0.64 Consensus pattern (7 bp): ACTTTTC Left flanking sequence: Indices 8249947 -- 8250446 CCTGTCGTAGAACACCACAATTTGGCTCGATTGATTCAGAAATCATGTCAATTGCTCTTGGATAA AACTACACCAGATGGAACAGAAGTGCAAATAAAATTAGAATTCCCTGACTGGAGAGATACCGCCT GATTCTCTATGTGTTGAATAAAGCTTAACGGTTAAAAAAAAATTAATTGAAATCTGCCTGAAAAA ATATCTAAATACAGTACTCACAAGAGAAACTACGGATTTTGAGAATTCGAATTTCGTAGAAAATA TTTTTGCAATGTGTATCAGCTGTAATGGTACATATATTTATTTATTAATATTGAATTTTATCTAA TTTTTGAAACAATTGGTTTTTTAAACTATTAAAATTGTATTATACTGCCCCAAGTTAAGGAATTA CTCGTAGTGTGCGTTCTACGGAACCGGTGGTGTGTCGAGTGCAGCTTCGCTCCATTGTACAAGTT CAATTTCAAACAGAGATTTGCCGCCAAGCAAAACTGCCTTCGTTT Right flanking sequence: Indices 8250469 -- 8250968 CCATTTAACGAAGTTTATGCTGCCGTTGTTTTGTTATTTTTTTAATCATAATTTATTACCATTTT TAAAACATATTTACAGCCATGTCGATGGAGCCTCGTAAGAAGCGGAACTCGATTCTCAAGGTGCG GCAAGCCGTCGAAACCATCGAGGAAACCGTCATGAACAGTGGGCCTAGTTCCACAACAACTAATC GACGAGTCAGCTTTCATAACGTGAAGCATGTCAAGTCAGTTAGAGTCAGTGAATAATTTATCAAT AAAATAATTATTTCAGGCAGTATGACAGGGACCATGGTAAAATTCTTGACGCCACACCAGTTAAG GAGAAGATTACTGACACTATTGGATCAGATGGTATTTTGACGTGAGTTCCATCCTTTAACGTGAA ATAATGAATACGTAAAAATCTTTTTAAGACCACGTGGCGGAAACATGGATATTTCCGAATCTCCG GCCTGCACGTCCTCATTTCAAGTGTTCGGCGGTGGTAATCTCGAT Found at i:8250465 original size:8 final size:8 Alignment explanation
Indices: 8250444--8250467 Score: 34 Period size: 8 Copynumber: 3.1 Consensus size: 8 8250434 ACTGCCTTCG 8250444 TTTAC-TT 1 TTTACTTT * 8250451 TTCACTTT 1 TTTACTTT 8250459 TTTACTTT 1 TTTACTTT 8250467 T 1 T 8250468 CCCATTTAAC Statistics Matches: 14, Mismatches: 2, Indels: 1 0.82 0.12 0.06 Matches are distributed among these distances: 7 4 0.29 8 10 0.71 ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71 Consensus pattern (8 bp): TTTACTTT Left flanking sequence: Indices 8249944 -- 8250443 GAGCCTGTCGTAGAACACCACAATTTGGCTCGATTGATTCAGAAATCATGTCAATTGCTCTTGGA TAAAACTACACCAGATGGAACAGAAGTGCAAATAAAATTAGAATTCCCTGACTGGAGAGATACCG CCTGATTCTCTATGTGTTGAATAAAGCTTAACGGTTAAAAAAAAATTAATTGAAATCTGCCTGAA AAAATATCTAAATACAGTACTCACAAGAGAAACTACGGATTTTGAGAATTCGAATTTCGTAGAAA ATATTTTTGCAATGTGTATCAGCTGTAATGGTACATATATTTATTTATTAATATTGAATTTTATC TAATTTTTGAAACAATTGGTTTTTTAAACTATTAAAATTGTATTATACTGCCCCAAGTTAAGGAA TTACTCGTAGTGTGCGTTCTACGGAACCGGTGGTGTGTCGAGTGCAGCTTCGCTCCATTGTACAA GTTCAATTTCAAACAGAGATTTGCCGCCAAGCAAAACTGCCTTCG Right flanking sequence: Indices 8250468 -- 8250967 CCCATTTAACGAAGTTTATGCTGCCGTTGTTTTGTTATTTTTTTAATCATAATTTATTACCATTT TTAAAACATATTTACAGCCATGTCGATGGAGCCTCGTAAGAAGCGGAACTCGATTCTCAAGGTGC GGCAAGCCGTCGAAACCATCGAGGAAACCGTCATGAACAGTGGGCCTAGTTCCACAACAACTAAT CGACGAGTCAGCTTTCATAACGTGAAGCATGTCAAGTCAGTTAGAGTCAGTGAATAATTTATCAA TAAAATAATTATTTCAGGCAGTATGACAGGGACCATGGTAAAATTCTTGACGCCACACCAGTTAA GGAGAAGATTACTGACACTATTGGATCAGATGGTATTTTGACGTGAGTTCCATCCTTTAACGTGA AATAATGAATACGTAAAAATCTTTTTAAGACCACGTGGCGGAAACATGGATATTTCCGAATCTCC GGCCTGCACGTCCTCATTTCAAGTGTTCGGCGGTGGTAATCTCGA Found at i:8254383 original size:8 final size:8 Alignment explanation
Indices: 8254370--8254389 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 8254360 ACACCTCGGG 8254370 AGGTACAT 1 AGGTACAT * 8254378 AGGTACGT 1 AGGTACAT 8254386 AGGT 1 AGGT 8254390 GAGCAGTAAG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.30, C:0.10, G:0.35, T:0.25 Consensus pattern (8 bp): AGGTACAT Left flanking sequence: Indices 8253870 -- 8254369 ATCGAAAAATTAACAGTCAAAAATTATAATTTTAGATGCCGCCTTCACCCTTCCCTTGCATCAGG CCTACAATACTTCTGATGCTCATATAATTCTTTACCTAATGTGCCATATATTTTAGTTTTTTTTT CATCTAAAAATACCCATTGTGCATCAACCGCACTTGCTGTATTTCCTTCAAGATGTTTACCTTTT CCCCTATACATTTATGCCTCAGAGCAATCACAAAGTTATGTTTTTATTCCTAGTTCATTCTCAAT CAATCTAAAGGAGACTTATGGTTTGAATAGTCAAATGAATAAATATTCCTTGTAACCAAATTTTT TTGTAGCCGTGTTTTTTTTTGTAAAATGAAGTTATTGTGCGTTTAAAAATCGGAGTTTAAAAAAT CGGAGCTTCAGTCTCCTCTCTTAAAAATAATTTTAGCTTACTATTTACTACTGTAGTTCCAAATA GAATATACATAATAAGGCGGGTAGGCAAGAGTTTGACACCTCGGG Right flanking sequence: Indices 8254390 -- 8254889 GAGCAGTAAGTATACAAATTTTTTAAAGTTTTACTTTGATTTTTTTAAGTTTTACTTTGATTTTT TTAAGTTTTACTTTGATTTTTTTAAGTTTTACTTTGATTTTTTTAAGTTTTACTTTGATTTTTTA AAGTTTTACTTCTTCTCAGTTTTTAATTTTTATGTGGAGGCTTTGAAAAACAAAAATAAAAATTT GCAAGGGCTATTGAATTTGCCAGAAAAAAATGAAAACTCCAAAAAGTGGGCGTGGCCTGATCAGC CATTTGAATTGTCTTGTTGTAAAATTGAGAAAAAATAATATTTTTATAACATTTTGTACAGTTAT ATTTGGTCATTACGACCTAGTTGTTCCACTGTTAAGAAGAATCTAACATATAGCGCGAGCTTTCT AAATCAACCTAATAATGAAAATCAGAAAATAATTTTTTATGCACTTGAAAACTTCACAAAAAGCT AAAATTCTTAGAGAAGTTCTGAATATGATCATTTATCATGTTTGA Found at i:8255008 original size:9 final size:9 Alignment explanation
Indices: 8254994--8255012 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 8254984 TCTTTTTTTC 8254994 TTCTTTCTT 1 TTCTTTCTT 8255003 TTCTTTCTT 1 TTCTTTCTT 8255012 T 1 T 8255013 CCTCCACTTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79 Consensus pattern (9 bp): TTCTTTCTT Left flanking sequence: Indices 8254494 -- 8254993 TTTTTAAGTTTTACTTTGATTTTTTAAAGTTTTACTTCTTCTCAGTTTTTAATTTTTATGTGGAG GCTTTGAAAAACAAAAATAAAAATTTGCAAGGGCTATTGAATTTGCCAGAAAAAAATGAAAACTC CAAAAAGTGGGCGTGGCCTGATCAGCCATTTGAATTGTCTTGTTGTAAAATTGAGAAAAAATAAT ATTTTTATAACATTTTGTACAGTTATATTTGGTCATTACGACCTAGTTGTTCCACTGTTAAGAAG AATCTAACATATAGCGCGAGCTTTCTAAATCAACCTAATAATGAAAATCAGAAAATAATTTTTTA TGCACTTGAAAACTTCACAAAAAGCTAAAATTCTTAGAGAAGTTCTGAATATGATCATTTATCAT GTTTGAAATGGAGCACTTGTTGCTCTTTTTGTCATGCTTGTCCATGTTGGTTTCTATTGCATTCC AAAGTGTGCTTCTTCCTCTTATTCTACATCTCTTCTCTTTTTTTC Right flanking sequence: Indices 8255013 -- 8255512 CCTCCACTTTCGTTCTTTCTCTGCCAACAATTTCAAACACCACTCCCTTTTTCTCGTTCCCAAAA GAAGGTCCTTCTCCATTTCAGTTTTACCAGCAGCTGCTCCGTCGAGTCCCTCATCTAACTCGTTT CTTTTTCCCTCTTTGTCCCATTACTTTTACTCATTACGGGACACGACTATGGTGAAATTAACTGA ATCGGCTGTATATATTCGTACAAAATGTTCACTAGAGAATGTGAAAAAGCTAAATTTATGGTAGG TTGAAAATTTGAATTTTTAACTCAAAGCAATAATTCCAAAAAAAAAAAAGAAAATTAGTATTCTG TTTCAGGGGGTGCGGAATCGATGACATTCAAGTATGTGAGAAAATGAGCCTTCTGGAAGTTTTAT CATTGAGGTAGGTTGTGTCTCATATTATGATTTTCAAAAGCTTTTTGAAAATCTAGATTATTAGT TAGATGTTCCTTTTATAGATGGGGAACAGTAAGTGAGGATTTAGT Found at i:8255161 original size:10 final size:10 Alignment explanation
Indices: 8255142--8255161 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 8255132 CTAACTCGTT * 8255142 TCTTTTTCCC 1 TCTTTGTCCC 8255152 TCTTTGTCCC 1 TCTTTGTCCC 8255162 ATTACTTTTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.40, G:0.05, T:0.55 Consensus pattern (10 bp): TCTTTGTCCC Left flanking sequence: Indices 8254642 -- 8255141 TGATCAGCCATTTGAATTGTCTTGTTGTAAAATTGAGAAAAAATAATATTTTTATAACATTTTGT ACAGTTATATTTGGTCATTACGACCTAGTTGTTCCACTGTTAAGAAGAATCTAACATATAGCGCG AGCTTTCTAAATCAACCTAATAATGAAAATCAGAAAATAATTTTTTATGCACTTGAAAACTTCAC AAAAAGCTAAAATTCTTAGAGAAGTTCTGAATATGATCATTTATCATGTTTGAAATGGAGCACTT GTTGCTCTTTTTGTCATGCTTGTCCATGTTGGTTTCTATTGCATTCCAAAGTGTGCTTCTTCCTC TTATTCTACATCTCTTCTCTTTTTTTCTTCTTTCTTTTCTTTCTTTCCTCCACTTTCGTTCTTTC TCTGCCAACAATTTCAAACACCACTCCCTTTTTCTCGTTCCCAAAAGAAGGTCCTTCTCCATTTC AGTTTTACCAGCAGCTGCTCCGTCGAGTCCCTCATCTAACTCGTT Right flanking sequence: Indices 8255162 -- 8255661 ATTACTTTTACTCATTACGGGACACGACTATGGTGAAATTAACTGAATCGGCTGTATATATTCGT ACAAAATGTTCACTAGAGAATGTGAAAAAGCTAAATTTATGGTAGGTTGAAAATTTGAATTTTTA ACTCAAAGCAATAATTCCAAAAAAAAAAAAGAAAATTAGTATTCTGTTTCAGGGGGTGCGGAATC GATGACATTCAAGTATGTGAGAAAATGAGCCTTCTGGAAGTTTTATCATTGAGGTAGGTTGTGTC TCATATTATGATTTTCAAAAGCTTTTTGAAAATCTAGATTATTAGTTAGATGTTCCTTTTATAGA TGGGGAACAGTAAGTGAGGATTTAGTTTAAAAGCACTTATGAAGGCAAACATGGCTGAATATCAC AACAAATTTTTTGAATTAAAAAAAATCAGTCATAGTTTTGGTGAATTGCAAAATGTATCTAAAAC CAGGAAAACTTTCTGGAATCTTTTTGTTATGCTTTGAAAAATCTG Found at i:8256451 original size:7 final size:7 Alignment explanation
Indices: 8256439--8256453 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8256429 AGTGTCTGTT 8256439 TGTTTAA 1 TGTTTAA 8256446 TGTTTAA 1 TGTTTAA 8256453 T 1 T 8256454 CGTCTTTCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60 Consensus pattern (7 bp): TGTTTAA Left flanking sequence: Indices 8255939 -- 8256438 ATGGATTGACGAGAATCCTTGTGTTGGAGAAGGTGGTCAAGAGTATCGGAGAAAAGTTATTCGAG TTTTACCAAACCTGACAAAACTTGATGATAAGCGTAAGATTTTAGAATTTGCTTAGTTACACTAA TGACCATCGAAAATTATCAAATATCACAATTATACACTCCTAGGAGTTTTCAAATTTAAAAATGT CCAGCTTTGGCGAAGTTCCGAATTTAGGAAATGTTTGGTTTTTTTAAAAAGAATTTTAGATCAGT TTCGCATATTTCAACCTTTTCAATGTATCCAAATATTAAAACCGAAAATGACCTCGAAAGCTGAA GCTCTCCAAAAACTTTAAACTTCAGTTTTTCAGCTGTAACGACAACTGATCATCAGGAAGCCATT GAGGACAGTATTCCAGAATGTGATATGCATAATTCTCATTACAGTGCAAGATCGAACAGATCGAA TAGTATTGATTTGATGAGTAGATCTCTCTATGGTGAGTGTCTGTT Right flanking sequence: Indices 8256454 -- 8256953 CGTCTTTCTTGTATTACAGTAGGCCCAACAGTAGTCGATAGAATTGTTCAACCTCAACTTCTACA CTTTGGGGATACTTCAGATGAAGAAAGAACAACATATCCAGCTAGATCATTTTCTGTAGAAGTTC CCGGTTTACCGCTTACAGAAGATCATACAACTGTCTATTTGGATAGTGCTCCACAATCTCACATA GGGTCAAGACACAATTTGATGTCTCAATCTATGTATGGAACACTTTGTGGCACGTTAGCAGAGGA ACCAAGTTCAGCTGATGGAGAAGATGATTGGAATGATTTTAGGTATTATTCTGTTTGAAAACTTT TATTATTTTCGTGATCTTTTCAAAAGTGGAGTATGAGAAATTTTGAGAAATGCATTGCTGCCCTA ACATGTTCGAATACAAATATTTAAAACATTATAAAAATATAAAAATCACAGAAAAATAATTTAGA TTGGTACAATGTATATCTGTACTTTTTTGAGTAGATATAAACCTT Found at i:8256886 original size:8 final size:8 Alignment explanation
Indices: 8256853--8256889 Score: 35 Period size: 8 Copynumber: 4.4 Consensus size: 8 8256843 AACATGTTCG * 8256853 AATACAAA 1 AATATAAA * * 8256861 TATTTAAA 1 AATATAAA 8256869 ACATTATAAA 1 A-A-TATAAA 8256879 AATATAAA 1 AATATAAA 8256887 AAT 1 AAT 8256890 CACAGAAAAA Statistics Matches: 22, Mismatches: 5, Indels: 4 0.71 0.16 0.13 Matches are distributed among these distances: 8 14 0.64 9 2 0.09 10 6 0.27 ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30 Consensus pattern (8 bp): AATATAAA Left flanking sequence: Indices 8256353 -- 8256852 ATGCATAATTCTCATTACAGTGCAAGATCGAACAGATCGAATAGTATTGATTTGATGAGTAGATC TCTCTATGGTGAGTGTCTGTTTGTTTAATGTTTAATCGTCTTTCTTGTATTACAGTAGGCCCAAC AGTAGTCGATAGAATTGTTCAACCTCAACTTCTACACTTTGGGGATACTTCAGATGAAGAAAGAA CAACATATCCAGCTAGATCATTTTCTGTAGAAGTTCCCGGTTTACCGCTTACAGAAGATCATACA ACTGTCTATTTGGATAGTGCTCCACAATCTCACATAGGGTCAAGACACAATTTGATGTCTCAATC TATGTATGGAACACTTTGTGGCACGTTAGCAGAGGAACCAAGTTCAGCTGATGGAGAAGATGATT GGAATGATTTTAGGTATTATTCTGTTTGAAAACTTTTATTATTTTCGTGATCTTTTCAAAAGTGG AGTATGAGAAATTTTGAGAAATGCATTGCTGCCCTAACATGTTCG Right flanking sequence: Indices 8256890 -- 8257389 CACAGAAAAATAATTTAGATTGGTACAATGTATATCTGTACTTTTTTGAGTAGATATAAACCTTT TTTGTTCCTTTTCTAGCTCAATTTTCCAAACACAAAAGTGGTCTCTACCAACCGTTAGGCATGTA GATAGGCCGACGGGCATGAGGTAGGTGTGTTTGACAATGTGCCTACCTACATGGGACCCAAAAAA AACCAAAAAAAAAACGAATCAAAAAACAAAATTTGACTTTAATTTAAATCAATATACATTCTATA TTTTTAGCATAGAAGAAGATCGAGTTATGGTTCAAATGCCTCTAGCAGCTTCTCACAGAATGTAC CAAAGTATGCATGAGGGAATGGTTATAGAAATGAAACGACCACCTGTAAGTGATTTCCTTTGCTT AATGTGAGCATAAAGTATCTTCAGGTATACGGTAGAAGTGTGAGCATGCCACGCCGGCGAGCAAC AAATCTCACAACGCGAGCAAGTTCAATGAGCCCCGCAAGAGAGCA Found at i:8257092 original size:10 final size:10 Alignment explanation
Indices: 8257077--8257096 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 8257067 TACATGGGAC 8257077 CCAAAAAAAA 1 CCAAAAAAAA 8257087 CCAAAAAAAA 1 CCAAAAAAAA 8257097 AACGAATCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00 Consensus pattern (10 bp): CCAAAAAAAA Left flanking sequence: Indices 8256577 -- 8257076 GAAGTTCCCGGTTTACCGCTTACAGAAGATCATACAACTGTCTATTTGGATAGTGCTCCACAATC TCACATAGGGTCAAGACACAATTTGATGTCTCAATCTATGTATGGAACACTTTGTGGCACGTTAG CAGAGGAACCAAGTTCAGCTGATGGAGAAGATGATTGGAATGATTTTAGGTATTATTCTGTTTGA AAACTTTTATTATTTTCGTGATCTTTTCAAAAGTGGAGTATGAGAAATTTTGAGAAATGCATTGC TGCCCTAACATGTTCGAATACAAATATTTAAAACATTATAAAAATATAAAAATCACAGAAAAATA ATTTAGATTGGTACAATGTATATCTGTACTTTTTTGAGTAGATATAAACCTTTTTTGTTCCTTTT CTAGCTCAATTTTCCAAACACAAAAGTGGTCTCTACCAACCGTTAGGCATGTAGATAGGCCGACG GGCATGAGGTAGGTGTGTTTGACAATGTGCCTACCTACATGGGAC Right flanking sequence: Indices 8257097 -- 8257596 AACGAATCAAAAAACAAAATTTGACTTTAATTTAAATCAATATACATTCTATATTTTTAGCATAG AAGAAGATCGAGTTATGGTTCAAATGCCTCTAGCAGCTTCTCACAGAATGTACCAAAGTATGCAT GAGGGAATGGTTATAGAAATGAAACGACCACCTGTAAGTGATTTCCTTTGCTTAATGTGAGCATA AAGTATCTTCAGGTATACGGTAGAAGTGTGAGCATGCCACGCCGGCGAGCAACAAATCTCACAAC GCGAGCAAGTTCAATGAGCCCCGCAAGAGAGCAGAGACTCACAAAGATAATGTCAGCAGTTTCGG TTTTACTTGATGAACTTGACACTGATGGTCTTCGGCAGGTTGTTGATGAAGCACAGAGAAGACTC AAGAAGCAAAGATAATTTCACATTATTGTTGAAATAGAAGTTTATGGATTCTATAAATATTTGAT TCTTGAAAATTTTCACGAATTGTAAGAAAACTGTTTTAAAACAAA Found at i:8257986 original size:7 final size:7 Alignment explanation
Indices: 8257974--8257987 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 8257964 ATACAACATA 8257974 TGTGAAT 1 TGTGAAT 8257981 TGTGAAT 1 TGTGAAT 8257988 CTAATTGAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43 Consensus pattern (7 bp): TGTGAAT Left flanking sequence: Indices 8257474 -- 8257973 ACAGAGAAGACTCAAGAAGCAAAGATAATTTCACATTATTGTTGAAATAGAAGTTTATGGATTCT ATAAATATTTGATTCTTGAAAATTTTCACGAATTGTAAGAAAACTGTTTTAAAACAAACCAATCT GCACAATCCTTTCCCTTTGAACATAAAAGTTTAATAAAAACTACAGAAAAAATTAATTATGAAAA GAACGTTTAATGAAATTTGATTCTTTAAAAAATAAAGTGTGATTAGAAATACAACTTGAAATGTT TCCCTTCTTTACAGACTGAATTCCCATGAAACATATTGCATCTATTGTATATAAAGGTCAAGAAA CAATTGTTTCTTTCATTTTAGCTTCATTTCAGCTCCCTCCGATAAGTTTTTCATATGCTACTTCG TTTCATTCTACAGACATAGATCGAGAAAAAAACAGTGCATTTGTCTGTGACTTGTAAACAACGTG ACTCACGAGCCTTGTCTCGCGCGTACAAGCAGGAAATACAACATA Right flanking sequence: Indices 8257988 -- 8258487 CTAATTGAATCAAATTTATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTTGTGTT CTGCTATAATGTACAGTTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCACGCGAT TCGTGTTCCACAAAACACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTCTTTTTAT TTTTTATAAATTTAATGTTTGTCTTATAATTTAATTAATCTGATTTAGTATTTAATATTAAATTT CTACATTTCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATTCTTAT TGCTAATACATTTGGCATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGGAGGAT AGCAACCATCCACCATGCAAGACTAACAAGTCAAGTGAGTTTTTTAGATTTTAGATTTTTCTGTC TTTTGAGTAACTGGAGCCTAGTTGGCAACATCCACTTTTCGTTGT Found at i:8257998 original size:10 final size:10 Alignment explanation
Indices: 8257983--8258003 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 8257973 ATGTGAATTG * 8257983 TGAATCTAAT 1 TGAATCAAAT 8257993 TGAATCAAAT 1 TGAATCAAAT 8258003 T 1 T 8258004 TATGAGATTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38 Consensus pattern (10 bp): TGAATCAAAT Left flanking sequence: Indices 8257483 -- 8257982 ACTCAAGAAGCAAAGATAATTTCACATTATTGTTGAAATAGAAGTTTATGGATTCTATAAATATT TGATTCTTGAAAATTTTCACGAATTGTAAGAAAACTGTTTTAAAACAAACCAATCTGCACAATCC TTTCCCTTTGAACATAAAAGTTTAATAAAAACTACAGAAAAAATTAATTATGAAAAGAACGTTTA ATGAAATTTGATTCTTTAAAAAATAAAGTGTGATTAGAAATACAACTTGAAATGTTTCCCTTCTT TACAGACTGAATTCCCATGAAACATATTGCATCTATTGTATATAAAGGTCAAGAAACAATTGTTT CTTTCATTTTAGCTTCATTTCAGCTCCCTCCGATAAGTTTTTCATATGCTACTTCGTTTCATTCT ACAGACATAGATCGAGAAAAAAACAGTGCATTTGTCTGTGACTTGTAAACAACGTGACTCACGAG CCTTGTCTCGCGCGTACAAGCAGGAAATACAACATATGTGAATTG Right flanking sequence: Indices 8258004 -- 8258503 TATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTTGTGTTCTGCTATAATGTACAG TTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCACGCGATTCGTGTTCCACAAAAC ACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTCTTTTTATTTTTTATAAATTTAAT GTTTGTCTTATAATTTAATTAATCTGATTTAGTATTTAATATTAAATTTCTACATTTCCGGAATG CGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATTCTTATTGCTAATACATTTGGC ATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGGAGGATAGCAACCATCCACCAT GCAAGACTAACAAGTCAAGTGAGTTTTTTAGATTTTAGATTTTTCTGTCTTTTGAGTAACTGGAG CCTAGTTGGCAACATCCACTTTTCGTTGTGGAACTTTTTTTTTCA Found at i:8258022 original size:7 final size:7 Alignment explanation
Indices: 8258010--8258027 Score: 29 Period size: 6 Copynumber: 2.7 Consensus size: 7 8258000 AATTTATGAG 8258010 ATTTTTT 1 ATTTTTT 8258017 A-TTTTT 1 ATTTTTT 8258023 ATTTT 1 ATTTT 8258028 CTTCTTTATT Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 6 6 0.60 7 4 0.40 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (7 bp): ATTTTTT Left flanking sequence: Indices 8257510 -- 8258009 TATTGTTGAAATAGAAGTTTATGGATTCTATAAATATTTGATTCTTGAAAATTTTCACGAATTGT AAGAAAACTGTTTTAAAACAAACCAATCTGCACAATCCTTTCCCTTTGAACATAAAAGTTTAATA AAAACTACAGAAAAAATTAATTATGAAAAGAACGTTTAATGAAATTTGATTCTTTAAAAAATAAA GTGTGATTAGAAATACAACTTGAAATGTTTCCCTTCTTTACAGACTGAATTCCCATGAAACATAT TGCATCTATTGTATATAAAGGTCAAGAAACAATTGTTTCTTTCATTTTAGCTTCATTTCAGCTCC CTCCGATAAGTTTTTCATATGCTACTTCGTTTCATTCTACAGACATAGATCGAGAAAAAAACAGT GCATTTGTCTGTGACTTGTAAACAACGTGACTCACGAGCCTTGTCTCGCGCGTACAAGCAGGAAA TACAACATATGTGAATTGTGAATCTAATTGAATCAAATTTATGAG Right flanking sequence: Indices 8258028 -- 8258527 CTTCTTTATTCTATCTTTTTGTGTTCTGCTATAATGTACAGTTCGTAAAAGTAGTTACGTGGAAA TTAAATTAATTCTAGGTCACGCGATTCGTGTTCCACAAAACACCACATTTCTCAGCAACTTTCAA TCACGTGTTGTCCCTGTCTTTTTATTTTTTATAAATTTAATGTTTGTCTTATAATTTAATTAATC TGATTTAGTATTTAATATTAAATTTCTACATTTCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAG AGAATGGTATCTGTCCTATTCTTATTGCTAATACATTTGGCATTGTGCCAAGCAAAATGTGTGAT GACGGAATGTGACGGAGAGGAGGATAGCAACCATCCACCATGCAAGACTAACAAGTCAAGTGAGT TTTTTAGATTTTAGATTTTTCTGTCTTTTGAGTAACTGGAGCCTAGTTGGCAACATCCACTTTTC GTTGTGGAACTTTTTTTTTCAACTTAAGCCCAAATTTGATTCAAT Found at i:8258188 original size:7 final size:7 Alignment explanation
Indices: 8258176--8258189 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 8258166 TGTCCCTGTC 8258176 TTTTTAT 1 TTTTTAT 8258183 TTTTTAT 1 TTTTTAT 8258190 AAATTTAATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): TTTTTAT Left flanking sequence: Indices 8257676 -- 8258175 TAATGAAATTTGATTCTTTAAAAAATAAAGTGTGATTAGAAATACAACTTGAAATGTTTCCCTTC TTTACAGACTGAATTCCCATGAAACATATTGCATCTATTGTATATAAAGGTCAAGAAACAATTGT TTCTTTCATTTTAGCTTCATTTCAGCTCCCTCCGATAAGTTTTTCATATGCTACTTCGTTTCATT CTACAGACATAGATCGAGAAAAAAACAGTGCATTTGTCTGTGACTTGTAAACAACGTGACTCACG AGCCTTGTCTCGCGCGTACAAGCAGGAAATACAACATATGTGAATTGTGAATCTAATTGAATCAA ATTTATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTTGTGTTCTGCTATAATGTA CAGTTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCACGCGATTCGTGTTCCACAA AACACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTC Right flanking sequence: Indices 8258190 -- 8258689 AAATTTAATGTTTGTCTTATAATTTAATTAATCTGATTTAGTATTTAATATTAAATTTCTACATT TCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATTCTTATTGCTAAT ACATTTGGCATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGGAGGATAGCAACC ATCCACCATGCAAGACTAACAAGTCAAGTGAGTTTTTTAGATTTTAGATTTTTCTGTCTTTTGAG TAACTGGAGCCTAGTTGGCAACATCCACTTTTCGTTGTGGAACTTTTTTTTTCAACTTAAGCCCA AATTTGATTCAATATCTTATGGTTTTAGGGAGCTTCAGTAAGTGTGGTGAGTGGTGTAGACTAGG ACTTTGAAATAATTTCTAATATTACCGAAAAATGCCTTTAATTAATTTTTTCCAGCATATCTACC AATCACCGTGACACGGTCTCTAAATCCAACTTATATGGCTCGATT Found at i:8258241 original size:7 final size:7 Alignment explanation
Indices: 8258225--8258245 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 8258215 AATTAATCTG * 8258225 ATTTAGT 1 ATTTAAT 8258232 ATTTAAT 1 ATTTAAT * 8258239 ATTAAAT 1 ATTTAAT 8258246 TTCTACATTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52 Consensus pattern (7 bp): ATTTAAT Left flanking sequence: Indices 8257725 -- 8258224 TGAAATGTTTCCCTTCTTTACAGACTGAATTCCCATGAAACATATTGCATCTATTGTATATAAAG GTCAAGAAACAATTGTTTCTTTCATTTTAGCTTCATTTCAGCTCCCTCCGATAAGTTTTTCATAT GCTACTTCGTTTCATTCTACAGACATAGATCGAGAAAAAAACAGTGCATTTGTCTGTGACTTGTA AACAACGTGACTCACGAGCCTTGTCTCGCGCGTACAAGCAGGAAATACAACATATGTGAATTGTG AATCTAATTGAATCAAATTTATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTTGT GTTCTGCTATAATGTACAGTTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCACGC GATTCGTGTTCCACAAAACACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTCTTTT TATTTTTTATAAATTTAATGTTTGTCTTATAATTTAATTAATCTG Right flanking sequence: Indices 8258246 -- 8258745 TTCTACATTTCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATTCTT ATTGCTAATACATTTGGCATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGGAGG ATAGCAACCATCCACCATGCAAGACTAACAAGTCAAGTGAGTTTTTTAGATTTTAGATTTTTCTG TCTTTTGAGTAACTGGAGCCTAGTTGGCAACATCCACTTTTCGTTGTGGAACTTTTTTTTTCAAC TTAAGCCCAAATTTGATTCAATATCTTATGGTTTTAGGGAGCTTCAGTAAGTGTGGTGAGTGGTG TAGACTAGGACTTTGAAATAATTTCTAATATTACCGAAAAATGCCTTTAATTAATTTTTTCCAGC ATATCTACCAATCACCGTGACACGGTCTCTAAATCCAACTTATATGGCTCGATTCGAAAAGTACT GCTCGTATCTTGTACAGGAAGAGGATAAAGCTCAAGTCTGCTGTA Found at i:8258431 original size:7 final size:7 Alignment explanation
Indices: 8258419--8258436 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 8258409 CAAGTGAGTT 8258419 TTTTAGA 1 TTTTAGA 8258426 TTTTAGA 1 TTTTAGA 8258433 TTTT 1 TTTT 8258437 TCTGTCTTTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67 Consensus pattern (7 bp): TTTTAGA Left flanking sequence: Indices 8257919 -- 8258418 AAACAACGTGACTCACGAGCCTTGTCTCGCGCGTACAAGCAGGAAATACAACATATGTGAATTGT GAATCTAATTGAATCAAATTTATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTTG TGTTCTGCTATAATGTACAGTTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCACG CGATTCGTGTTCCACAAAACACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTCTTT TTATTTTTTATAAATTTAATGTTTGTCTTATAATTTAATTAATCTGATTTAGTATTTAATATTAA ATTTCTACATTTCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATTC TTATTGCTAATACATTTGGCATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGGA GGATAGCAACCATCCACCATGCAAGACTAACAAGTCAAGTGAGTT Right flanking sequence: Indices 8258437 -- 8258936 TCTGTCTTTTGAGTAACTGGAGCCTAGTTGGCAACATCCACTTTTCGTTGTGGAACTTTTTTTTT CAACTTAAGCCCAAATTTGATTCAATATCTTATGGTTTTAGGGAGCTTCAGTAAGTGTGGTGAGT GGTGTAGACTAGGACTTTGAAATAATTTCTAATATTACCGAAAAATGCCTTTAATTAATTTTTTC CAGCATATCTACCAATCACCGTGACACGGTCTCTAAATCCAACTTATATGGCTCGATTCGAAAAG TACTGCTCGTATCTTGTACAGGAAGAGGATAAAGCTCAAGTCTGCTGTACAGAACTGCAATTAAA AGGAATGACTGATCGAATTTCTAATGCTGCTACAATCCTTGGATCTTGTCCCAGTTGCTTCGACA ATTTTGCAAAACTCTGGTGTCAATTCACTTGTTCCCCAGATCAATCAAAATTCATGAAGGTAATG GAAACGACTGGTCCGAAAAATGTCGTGGTTAAAATGGAGTTCAAA Found at i:8258437 original size:8 final size:8 Alignment explanation
Indices: 8258418--8258437 Score: 33 Period size: 7 Copynumber: 2.6 Consensus size: 8 8258408 TCAAGTGAGT 8258418 TTTTTAGA 1 TTTTTAGA 8258426 -TTTTAGA 1 TTTTTAGA 8258433 TTTTT 1 TTTTT 8258438 CTGTCTTTTG Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 7 7 0.64 8 4 0.36 ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70 Consensus pattern (8 bp): TTTTTAGA Left flanking sequence: Indices 8257918 -- 8258417 TAAACAACGTGACTCACGAGCCTTGTCTCGCGCGTACAAGCAGGAAATACAACATATGTGAATTG TGAATCTAATTGAATCAAATTTATGAGATTTTTTATTTTTATTTTCTTCTTTATTCTATCTTTTT GTGTTCTGCTATAATGTACAGTTCGTAAAAGTAGTTACGTGGAAATTAAATTAATTCTAGGTCAC GCGATTCGTGTTCCACAAAACACCACATTTCTCAGCAACTTTCAATCACGTGTTGTCCCTGTCTT TTTATTTTTTATAAATTTAATGTTTGTCTTATAATTTAATTAATCTGATTTAGTATTTAATATTA AATTTCTACATTTCCGGAATGCGTCAAGGAGGAGGAGGAGGCGAGAGAATGGTATCTGTCCTATT CTTATTGCTAATACATTTGGCATTGTGCCAAGCAAAATGTGTGATGACGGAATGTGACGGAGAGG AGGATAGCAACCATCCACCATGCAAGACTAACAAGTCAAGTGAGT Right flanking sequence: Indices 8258438 -- 8258937 CTGTCTTTTGAGTAACTGGAGCCTAGTTGGCAACATCCACTTTTCGTTGTGGAACTTTTTTTTTC AACTTAAGCCCAAATTTGATTCAATATCTTATGGTTTTAGGGAGCTTCAGTAAGTGTGGTGAGTG GTGTAGACTAGGACTTTGAAATAATTTCTAATATTACCGAAAAATGCCTTTAATTAATTTTTTCC AGCATATCTACCAATCACCGTGACACGGTCTCTAAATCCAACTTATATGGCTCGATTCGAAAAGT ACTGCTCGTATCTTGTACAGGAAGAGGATAAAGCTCAAGTCTGCTGTACAGAACTGCAATTAAAA GGAATGACTGATCGAATTTCTAATGCTGCTACAATCCTTGGATCTTGTCCCAGTTGCTTCGACAA TTTTGCAAAACTCTGGTGTCAATTCACTTGTTCCCCAGATCAATCAAAATTCATGAAGGTAATGG AAACGACTGGTCCGAAAAATGTCGTGGTTAAAATGGAGTTCAAAG Found at i:8259782 original size:7 final size:7 Alignment explanation
Indices: 8259770--8259784 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8259760 GTTGCTCTGG 8259770 AAATTTC 1 AAATTTC 8259777 AAATTTC 1 AAATTTC 8259784 A 1 A 8259785 CAGTCTCACG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40 Consensus pattern (7 bp): AAATTTC Left flanking sequence: Indices 8259270 -- 8259769 AAATGCCCATCAACTTGTAGATATCTCCAAAGTTGAACATGTAAGTAGTGAATCAATTCAGCATA TTTAAAGGTTATCAAAGCCTTTCCGTTTCCTCACTCACTCCGTCGGAATGCATAGAGGCGCACTT TGATTCCTCAACCGGATCAAGTGTTATAAAGTAATTTTCAGCTCGGAACGAAAGTGTTCCATCCT CACTTCCCAGACTTTGAATGGTTACTGAAAATCTGCGGATGCCTCGCACTTACAGTCCTCCTGGT CTTCATTCTTAAATATTCTTGTCATAGACGATCAGCGCCTAATGGTGAAGATGGATGTTACGTGG ATTTGGGAAAAGGAAATTTGGAAGTTCAATTTGAAGGACTTTGTGCTCGATATGCAAATGTTAGT TAGATCCCCCTAGTAATACAAATAAATTCCAGTAATTGTCAGGCTGTAATTAAACATCCATTGAT ATTTGTTTCACTTGGACTTATTGTAGCTGCAGCTTGTTGCTCTGG Right flanking sequence: Indices 8259785 -- 8260284 CAGTCTCACGCATTCAGTTGATCAAGTTTCGGCTGCCGATGGAGAAACTAGACGGAACGAGAAAA AATTCATCCATTCTTTCGGGTTAGTTTATATTTTTCCCCATTTTTTTCAAAGATTTTACTAGTTC AGACCTAATCATCGAATTGAGCAAATATTCATCAACTTACCACCTACCACTAAGTCTATGTTCAA CATGCCACTTTTTGAAGAAGTGAGCTGTAACTTGATTTATGATATGTTAAATTGTATTATTTCAG ATGTTCCAATTGGTTGGGAATATTCAGAATTTGACAGCTTGCTATGGGAATTCGTCAGTGAAGCT TGATGATATATGCTACAAACCTATCGGAAAAAATCACGGGTGTGCAATTATGAGCCCAACCAACT ATTTCCAGGTTGGGTTTTCCTTATTTGAGCTCTTAACATTTTCAACATTGTCAATAGAACGGCCA CAGCTCATTTACTCCATCAAAAATCAATATTTCAGAACAAGTGGA Found at i:8260223 original size:9 final size:9 Alignment explanation
Indices: 8260209--8260228 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 8260199 TTGAGCTCTT * 8260209 AACATTTTC 1 AACATTGTC 8260218 AACATTGTC 1 AACATTGTC 8260227 AA 1 AA 8260229 TAGAACGGCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35 Consensus pattern (9 bp): AACATTGTC Left flanking sequence: Indices 8259709 -- 8260208 TTAAACATCCATTGATATTTGTTTCACTTGGACTTATTGTAGCTGCAGCTTGTTGCTCTGGAAAT TTCAAATTTCACAGTCTCACGCATTCAGTTGATCAAGTTTCGGCTGCCGATGGAGAAACTAGACG GAACGAGAAAAAATTCATCCATTCTTTCGGGTTAGTTTATATTTTTCCCCATTTTTTTCAAAGAT TTTACTAGTTCAGACCTAATCATCGAATTGAGCAAATATTCATCAACTTACCACCTACCACTAAG TCTATGTTCAACATGCCACTTTTTGAAGAAGTGAGCTGTAACTTGATTTATGATATGTTAAATTG TATTATTTCAGATGTTCCAATTGGTTGGGAATATTCAGAATTTGACAGCTTGCTATGGGAATTCG TCAGTGAAGCTTGATGATATATGCTACAAACCTATCGGAAAAAATCACGGGTGTGCAATTATGAG CCCAACCAACTATTTCCAGGTTGGGTTTTCCTTATTTGAGCTCTT Right flanking sequence: Indices 8260229 -- 8260728 TAGAACGGCCACAGCTCATTTACTCCATCAAAAATCAATATTTCAGAACAAGTGGACCAATTTCG AAAACGCGGGACCTCCAACTATTGATGATGAGATCTTTGATGATCAACACTGGGAACATTTGAAG TACTGTATAAGAAATCCTCTTACCGTATCCACATACTCTGAAATGTCATGTTTCGGAGAGTTTTC TGGGCCTATCGATCCGATTCTAGTGTTTGGTGGAAGTAATGAAAGTATCAAGGGTGCTGAAATGG CACGTTGCAAATGATAAATTGTGATTAATAATTTTCTATTTTCAGTACTACACCGCTCGGACTAT TATGATAACGGTTTTAATCAGAGGCCCAGAAGATCAAGCTATAGCCTGGGAAACTGCGTTTCTAA ACATGATGAGTCGTTATGAAATGAAACACGCAAATTTTACATTCATGACAGAAACGTCTGTTGCG GTTGGTAGAAAATTCATGTAATTTCTTAATTGAGTGTATTTTCCA Found at i:8260910 original size:9 final size:9 Alignment explanation
Indices: 8260896--8260914 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 8260886 TCAGCTGTTA 8260896 TGATCAGTG 1 TGATCAGTG 8260905 TGATCAGTG 1 TGATCAGTG 8260914 T 1 T 8260915 TTGGTGGTAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37 Consensus pattern (9 bp): TGATCAGTG Left flanking sequence: Indices 8260396 -- 8260895 CTGAAATGTCATGTTTCGGAGAGTTTTCTGGGCCTATCGATCCGATTCTAGTGTTTGGTGGAAGT AATGAAAGTATCAAGGGTGCTGAAATGGCACGTTGCAAATGATAAATTGTGATTAATAATTTTCT ATTTTCAGTACTACACCGCTCGGACTATTATGATAACGGTTTTAATCAGAGGCCCAGAAGATCAA GCTATAGCCTGGGAAACTGCGTTTCTAAACATGATGAGTCGTTATGAAATGAAACACGCAAATTT TACATTCATGACAGAAACGTCTGTTGCGGTTGGTAGAAAATTCATGTAATTTCTTAATTGAGTGT ATTTTCCAGGAAGAAATTCATACTGCTGTGGAGACTGATAAAATTGTGTCTGTGATTGCATGTGC TGCTGTTCTTATATGGGTTATTACAATGCTTGGAATTAATCATTGGCCAGAGTCATCCATATTGT CAGCTCTAGTTCATCACAAGCTACTCATTTCGATATCAGCTGTTA Right flanking sequence: Indices 8260915 -- 8261414 TTGGTGGTATGTCAGATCAAAAATATGTTCAAAGCTTTTGAGATGTTGAGACACCTTTCTGCCAA ATTTTGGAAAATTACTGTTGAACTGTGTTTTCTTACGACTTTCTGTCAAGGTTTTGTAACTTTCT TACAACAAGTTGAAAACCGAGGTGCAAGATATGCATAGTATTACAGTTTTCTATAAAATTTTAGT TGACAATTTTCTGACATCACCCTAATCTTGATTTCAGCTCGATTGGTATGTTCTCGCTCTTTGGT GTCCATGCAACAGATAATGCAATTGTTGTTTTATTCTTTGTCATCACTTGTCTTGGAATCAATCG AATCTTTGTCATTATCAGAACATTTCAAGCCAATGGTCACTGCTACGGACTTCCGAATATCTCAT ATCGAGAAATGAATCACAGAATTTCAAATGTAATGCGTCGAAGTATTCCAATTGTTCTAACAAAC TCCCTTATCTGTTCAACATGCCTTTTCTTAGCCGGAGGTGTTCTT Found at i:8262646 original size:9 final size:9 Alignment explanation
Indices: 8262634--8262661 Score: 33 Period size: 9 Copynumber: 3.1 Consensus size: 9 8262624 TTTGTCCGTT 8262634 TTGTCCTGG 1 TTGTCCTGG * 8262643 TTGTCCATCG 1 TTGTCC-TGG 8262653 TT-TCCTGG 1 TTGTCCTGG 8262661 T 1 T 8262662 GCCCCGGGGG Statistics Matches: 16, Mismatches: 2, Indels: 3 0.76 0.10 0.14 Matches are distributed among these distances: 8 3 0.19 9 9 0.56 10 4 0.25 ACGTcount: A:0.04, C:0.25, G:0.25, T:0.46 Consensus pattern (9 bp): TTGTCCTGG Left flanking sequence: Indices 8262134 -- 8262633 CATTGGCATACGCTGAGAACTACAAAGGAAACTATCTACACGGCGATGTAAATATTTGGCTGGAT TCATATCTTCAGTTCATGCATCCTCGAGGTTCATGCTGCAAAATGGATGGAAAACAATTTTGTAG GTTATTTGCAAGGACAACTAGCGTTCATTCTGATAACTTTGATAAGGGATAAGTTATGAGGTAAA GAAAAGAGAGTTGGGGCATGTACAGATTAGGGGAAAATACAATTTTTCCGAAACTACTGACGAAC TGAAGATCTAGCTGGGCATGGGCAATAAGCAGCATCCGGTCCTGGTTGGCCATCATGTCCTTGTT CTCCATCTGGTCCTGGTTGTCCGTTGGCTCCTGGCTGTCCATCGACTCCTGGAGCTCCAGCTGGC CCTGGTGCTCCTGGTGCTCCAGCTGATCCTGGTTGTCCATCAGATCCGACTGGTCCTTGTGGTCC TGGAGCTCCAGCGGCGCCTGGTGTTCCAGTAGATCTTTGTCCGTT Right flanking sequence: Indices 8262662 -- 8263161 GCCCCGGGGGCTCCTGGTGCTCCGGCATCTCCAGCTGGTCCTTCTGGTCCTGCTGGTCCTGGGGC TCCTCCTTGTCCATCAGCTCCTGGCTGTCCGTCTGGTCCGGCTGGCCCAGGTGCTCCTGGGGCTC CTGCTGGACCGGCTTCTCCTGCTGGGCATTGGATGCATGCTCCACCGGCGGCCGAAGCGAATTGA ATGGCAACTCCGTCGATTCCAGCGGCTCCAGCGTCTCCGTCTACTCCTGGCTCACCAGCAGCTCC TGGAGCTCCTGGTGGTCCTGGTGGTCCTGGTGGGCAGTTTTTAGCAAGAGCTTGACAGTCTGGAA GAGCGGCTTGACGTCTGGCGCGACCAAGAAGCATTTCCTTTGGTGAACGGGTAGACATCACCATG GTATCCCAGGCATTCTTCTCATTGATCTAAAATATCAGAGATTATGTGCAAGATTTTTAATGCAA AAATATTCCATAAGTTCAAAAGTTTAAATAAATCTAGTAGAATGT Found at i:8262888 original size:9 final size:9 Alignment explanation
Indices: 8262874--8262894 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 8262864 CTCCGTCGAT 8262874 TCCAGCGGC 1 TCCAGCGGC * 8262883 TCCAGCGTC 1 TCCAGCGGC 8262892 TCC 1 TCC 8262895 GTCTACTCCT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.10, C:0.48, G:0.24, T:0.19 Consensus pattern (9 bp): TCCAGCGGC Left flanking sequence: Indices 8262374 -- 8262873 TTCCGAAACTACTGACGAACTGAAGATCTAGCTGGGCATGGGCAATAAGCAGCATCCGGTCCTGG TTGGCCATCATGTCCTTGTTCTCCATCTGGTCCTGGTTGTCCGTTGGCTCCTGGCTGTCCATCGA CTCCTGGAGCTCCAGCTGGCCCTGGTGCTCCTGGTGCTCCAGCTGATCCTGGTTGTCCATCAGAT CCGACTGGTCCTTGTGGTCCTGGAGCTCCAGCGGCGCCTGGTGTTCCAGTAGATCTTTGTCCGTT TTGTCCTGGTTGTCCATCGTTTCCTGGTGCCCCGGGGGCTCCTGGTGCTCCGGCATCTCCAGCTG GTCCTTCTGGTCCTGCTGGTCCTGGGGCTCCTCCTTGTCCATCAGCTCCTGGCTGTCCGTCTGGT CCGGCTGGCCCAGGTGCTCCTGGGGCTCCTGCTGGACCGGCTTCTCCTGCTGGGCATTGGATGCA TGCTCCACCGGCGGCCGAAGCGAATTGAATGGCAACTCCGTCGAT Right flanking sequence: Indices 8262895 -- 8263394 GTCTACTCCTGGCTCACCAGCAGCTCCTGGAGCTCCTGGTGGTCCTGGTGGTCCTGGTGGGCAGT TTTTAGCAAGAGCTTGACAGTCTGGAAGAGCGGCTTGACGTCTGGCGCGACCAAGAAGCATTTCC TTTGGTGAACGGGTAGACATCACCATGGTATCCCAGGCATTCTTCTCATTGATCTAAAATATCAG AGATTATGTGCAAGATTTTTAATGCAAAAATATTCCATAAGTTCAAAAGTTTAAATAAATCTAGT AGAATGTTTTTACAGTTTTTTGTTTCAATCTTTACAGATATTCAATAGTTCTCATAGCACTTCCG CGTTTTTCTATTTTCTAAAAAATCGGGTGTATTTTGCCTTGAAAACTAACAGTTTTATGACAACT CGAAAGTTTCAAATTGTTCTTATAAATGTATGAAATTACAAGGGCATAGTATGAAATTACAAGGG CAATGCCATTTCTAATTTTGACCTACGTGCTAAATGTTCGGGCGT Found at i:8262952 original size:9 final size:9 Alignment explanation
Indices: 8262919--8262954 Score: 58 Period size: 9 Copynumber: 4.0 Consensus size: 9 8262909 CACCAGCAGC * * 8262919 TCCTGGAGC 1 TCCTGGTGG 8262928 TCCTGGTGG 1 TCCTGGTGG 8262937 TCCTGGTGG 1 TCCTGGTGG 8262946 TCCTGGTGG 1 TCCTGGTGG 8262955 GCAGTTTTTA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 25 1.00 ACGTcount: A:0.03, C:0.25, G:0.42, T:0.31 Consensus pattern (9 bp): TCCTGGTGG Left flanking sequence: Indices 8262419 -- 8262918 TAAGCAGCATCCGGTCCTGGTTGGCCATCATGTCCTTGTTCTCCATCTGGTCCTGGTTGTCCGTT GGCTCCTGGCTGTCCATCGACTCCTGGAGCTCCAGCTGGCCCTGGTGCTCCTGGTGCTCCAGCTG ATCCTGGTTGTCCATCAGATCCGACTGGTCCTTGTGGTCCTGGAGCTCCAGCGGCGCCTGGTGTT CCAGTAGATCTTTGTCCGTTTTGTCCTGGTTGTCCATCGTTTCCTGGTGCCCCGGGGGCTCCTGG TGCTCCGGCATCTCCAGCTGGTCCTTCTGGTCCTGCTGGTCCTGGGGCTCCTCCTTGTCCATCAG CTCCTGGCTGTCCGTCTGGTCCGGCTGGCCCAGGTGCTCCTGGGGCTCCTGCTGGACCGGCTTCT CCTGCTGGGCATTGGATGCATGCTCCACCGGCGGCCGAAGCGAATTGAATGGCAACTCCGTCGAT TCCAGCGGCTCCAGCGTCTCCGTCTACTCCTGGCTCACCAGCAGC Right flanking sequence: Indices 8262955 -- 8263454 GCAGTTTTTAGCAAGAGCTTGACAGTCTGGAAGAGCGGCTTGACGTCTGGCGCGACCAAGAAGCA TTTCCTTTGGTGAACGGGTAGACATCACCATGGTATCCCAGGCATTCTTCTCATTGATCTAAAAT ATCAGAGATTATGTGCAAGATTTTTAATGCAAAAATATTCCATAAGTTCAAAAGTTTAAATAAAT CTAGTAGAATGTTTTTACAGTTTTTTGTTTCAATCTTTACAGATATTCAATAGTTCTCATAGCAC TTCCGCGTTTTTCTATTTTCTAAAAAATCGGGTGTATTTTGCCTTGAAAACTAACAGTTTTATGA CAACTCGAAAGTTTCAAATTGTTCTTATAAATGTATGAAATTACAAGGGCATAGTATGAAATTAC AAGGGCAATGCCATTTCTAATTTTGACCTACGTGCTAAATGTTCGGGCGTTCTAACTAACCTTGA ACTCGTCAAAAGTTTCCATAGTCTCGTAGTAAAATCTATTGATAT Found at