TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11227567 original size:9 final size:9 Alignment explanation
Indices: 11227553--11227575 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 11227543 CCGAGCTGGA 11227553 CAAATTCAG 1 CAAATTCAG * 11227562 CAAATTCGG 1 CAAATTCAG 11227571 CAAAT 1 CAAAT 11227576 GTGTTTTTTG Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.43, C:0.22, G:0.13, T:0.22 Consensus pattern (9 bp): CAAATTCAG Left flanking sequence: Indices 11227053 -- 11227552 AGGTGAGAACGGAAGTAAAACAATAAAATAATAATAATGGCGCTAATTGTAATAAAAGTGCAAAC AACACTCTCACTCATGCTCTGAAACTGAGCCGGTAAGTGGGAGGAGCGGGAAGAGGTAGATCACG CGTAGTGGTGGACACGTGGCAGTCGGGCACAACTTGGTACATACATATGAACGCATGGGGGCCCT TCTCCTAATTGAAGAACAGAGGGTTAGGCTGTATTCTTAACGGGGGAACACTGGAAAAGTGTAGT TGAAATTTATAAATATTAAAGATGGAAAACCCCCGTTAGCACTGGAAATGTTGGATTTGAAATTC GCGAGCAGATAACTTTAAACAGAAGCTCAAATTTTATTTCATACTCGAAGACGTAAAAAGAACTT TCTAGAAAATCAAAAAATGCGCGGAAATTCGAATTTTATAGCATTTTTTTAAACCTTTTTTTGGT TGAAACCAGAGGTGTGCGGCAAATCTTAAAATTTGCCGAGCTGGA Right flanking sequence: Indices 11227576 -- 11228075 GTGTTTTTTGGAGAAATAAAAATACGGAATTCTTAGCAAACGTTTGGTTTTTCAATAAGGTTAGT GTAGTCTGCCTGCACAAAATTTAAAGTAATTCAATTTTAATGATATTTTATTTTCCAGAATTTTT GGCATAAAGTTATTAGCTGGTTTTTTCACATTTTTACACCCTATAAGTGTCAATTTACTGAACTT CTAGCCAAAAAATTTTTAACAAAAAAATTCAAAATAATTCACACCATAGTAATAATGATGAGCTA CACCACGAATTAGCAAAAAAGACGAAAAAATACCAAAAAAAAAATTGAAAACTCACCAAACTGTG AGCCAATATTACTGTCAGAATCCAGAACGCCTCTTTCACCTCCCACTGAGCATCTTTGTGCTCCT GTAGTCTTTAACAATCCAGAATGTGTAGTTCACACTTCGAAAGTATACCTCCACCTACACCTCGA CACCTCACACTTTAGTGATAGCGGTGCGAATTGGCTCTGAAGGAG Found at i:11227809 original size:10 final size:10 Alignment explanation
Indices: 11227790--11227811 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 11227780 AAATTTTTAA 11227790 CAAAAAAATT 1 CAAAAAAATT * 11227800 CAAAATAATT 1 CAAAAAAATT 11227810 CA 1 CA 11227812 CACCATAGTA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.64, C:0.14, G:0.00, T:0.23 Consensus pattern (10 bp): CAAAAAAATT Left flanking sequence: Indices 11227290 -- 11227789 GGGGAACACTGGAAAAGTGTAGTTGAAATTTATAAATATTAAAGATGGAAAACCCCCGTTAGCAC TGGAAATGTTGGATTTGAAATTCGCGAGCAGATAACTTTAAACAGAAGCTCAAATTTTATTTCAT ACTCGAAGACGTAAAAAGAACTTTCTAGAAAATCAAAAAATGCGCGGAAATTCGAATTTTATAGC ATTTTTTTAAACCTTTTTTTGGTTGAAACCAGAGGTGTGCGGCAAATCTTAAAATTTGCCGAGCT GGACAAATTCAGCAAATTCGGCAAATGTGTTTTTTGGAGAAATAAAAATACGGAATTCTTAGCAA ACGTTTGGTTTTTCAATAAGGTTAGTGTAGTCTGCCTGCACAAAATTTAAAGTAATTCAATTTTA ATGATATTTTATTTTCCAGAATTTTTGGCATAAAGTTATTAGCTGGTTTTTTCACATTTTTACAC CCTATAAGTGTCAATTTACTGAACTTCTAGCCAAAAAATTTTTAA Right flanking sequence: Indices 11227812 -- 11228311 CACCATAGTAATAATGATGAGCTACACCACGAATTAGCAAAAAAGACGAAAAAATACCAAAAAAA AAATTGAAAACTCACCAAACTGTGAGCCAATATTACTGTCAGAATCCAGAACGCCTCTTTCACCT CCCACTGAGCATCTTTGTGCTCCTGTAGTCTTTAACAATCCAGAATGTGTAGTTCACACTTCGAA AGTATACCTCCACCTACACCTCGACACCTCACACTTTAGTGATAGCGGTGCGAATTGGCTCTGAA GGAGAAGATGTGTCGTGCTCAGCGGGAGGGCGGGAGAATGATTTAGAGAGGAGTATCATGGGATT TGTCAGAGATTTTTCAACAAAAATTATAGTGAAAAAATTTACAATATTTTATTAGTTGGCAACTT TTTAGTAGCTTCTACAGCAGGAGTGTCCAGAAAACTTGCCAAATTTGCCGAATCCGGCAAATTTC GTAAAAGTATATTTTTGATATTCGCCGCACACCACAAAAAATTGG Found at i:11227865 original size:10 final size:10 Alignment explanation
Indices: 11227849--11227875 Score: 40 Period size: 10 Copynumber: 2.7 Consensus size: 10 11227839 CACGAATTAG 11227849 CAAAAAAGAC 1 CAAAAAAGAC * * 11227859 GAAAAAATAC 1 CAAAAAAGAC 11227869 CAAAAAA 1 CAAAAAA 11227876 AAAATTGAAA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.74, C:0.15, G:0.07, T:0.04 Consensus pattern (10 bp): CAAAAAAGAC Left flanking sequence: Indices 11227349 -- 11227848 TAGCACTGGAAATGTTGGATTTGAAATTCGCGAGCAGATAACTTTAAACAGAAGCTCAAATTTTA TTTCATACTCGAAGACGTAAAAAGAACTTTCTAGAAAATCAAAAAATGCGCGGAAATTCGAATTT TATAGCATTTTTTTAAACCTTTTTTTGGTTGAAACCAGAGGTGTGCGGCAAATCTTAAAATTTGC CGAGCTGGACAAATTCAGCAAATTCGGCAAATGTGTTTTTTGGAGAAATAAAAATACGGAATTCT TAGCAAACGTTTGGTTTTTCAATAAGGTTAGTGTAGTCTGCCTGCACAAAATTTAAAGTAATTCA ATTTTAATGATATTTTATTTTCCAGAATTTTTGGCATAAAGTTATTAGCTGGTTTTTTCACATTT TTACACCCTATAAGTGTCAATTTACTGAACTTCTAGCCAAAAAATTTTTAACAAAAAAATTCAAA ATAATTCACACCATAGTAATAATGATGAGCTACACCACGAATTAG Right flanking sequence: Indices 11227876 -- 11228375 AAAATTGAAAACTCACCAAACTGTGAGCCAATATTACTGTCAGAATCCAGAACGCCTCTTTCACC TCCCACTGAGCATCTTTGTGCTCCTGTAGTCTTTAACAATCCAGAATGTGTAGTTCACACTTCGA AAGTATACCTCCACCTACACCTCGACACCTCACACTTTAGTGATAGCGGTGCGAATTGGCTCTGA AGGAGAAGATGTGTCGTGCTCAGCGGGAGGGCGGGAGAATGATTTAGAGAGGAGTATCATGGGAT TTGTCAGAGATTTTTCAACAAAAATTATAGTGAAAAAATTTACAATATTTTATTAGTTGGCAACT TTTTAGTAGCTTCTACAGCAGGAGTGTCCAGAAAACTTGCCAAATTTGCCGAATCCGGCAAATTT CGTAAAAGTATATTTTTGATATTCGCCGCACACCACAAAAAATTGGATTTTTTTAATTTGACAAA AACTATTGATTTTGTACTAAAAATTCTAGTAAAATAACATAAAAT Found at i:11228035 original size:8 final size:7 Alignment explanation
Indices: 11228012--11228040 Score: 35 Period size: 6 Copynumber: 4.3 Consensus size: 7 11228002 TCGAAAGTAT 11228012 ACCTC-C 1 ACCTCAC 11228018 ACCT-AC 1 ACCTCAC 11228024 ACCTCGAC 1 ACCTC-AC 11228032 ACCTCAC 1 ACCTCAC 11228039 AC 1 AC 11228041 TTTAGTGATA Statistics Matches: 20, Mismatches: 0, Indels: 5 0.80 0.00 0.20 Matches are distributed among these distances: 6 9 0.45 7 4 0.20 8 7 0.35 ACGTcount: A:0.28, C:0.55, G:0.03, T:0.14 Consensus pattern (7 bp): ACCTCAC Left flanking sequence: Indices 11227512 -- 11228011 ACCAGAGGTGTGCGGCAAATCTTAAAATTTGCCGAGCTGGACAAATTCAGCAAATTCGGCAAATG TGTTTTTTGGAGAAATAAAAATACGGAATTCTTAGCAAACGTTTGGTTTTTCAATAAGGTTAGTG TAGTCTGCCTGCACAAAATTTAAAGTAATTCAATTTTAATGATATTTTATTTTCCAGAATTTTTG GCATAAAGTTATTAGCTGGTTTTTTCACATTTTTACACCCTATAAGTGTCAATTTACTGAACTTC TAGCCAAAAAATTTTTAACAAAAAAATTCAAAATAATTCACACCATAGTAATAATGATGAGCTAC ACCACGAATTAGCAAAAAAGACGAAAAAATACCAAAAAAAAAATTGAAAACTCACCAAACTGTGA GCCAATATTACTGTCAGAATCCAGAACGCCTCTTTCACCTCCCACTGAGCATCTTTGTGCTCCTG TAGTCTTTAACAATCCAGAATGTGTAGTTCACACTTCGAAAGTAT Right flanking sequence: Indices 11228041 -- 11228540 TTTAGTGATAGCGGTGCGAATTGGCTCTGAAGGAGAAGATGTGTCGTGCTCAGCGGGAGGGCGGG AGAATGATTTAGAGAGGAGTATCATGGGATTTGTCAGAGATTTTTCAACAAAAATTATAGTGAAA AAATTTACAATATTTTATTAGTTGGCAACTTTTTAGTAGCTTCTACAGCAGGAGTGTCCAGAAAA CTTGCCAAATTTGCCGAATCCGGCAAATTTCGTAAAAGTATATTTTTGATATTCGCCGCACACCA CAAAAAATTGGATTTTTTTAATTTGACAAAAACTATTGATTTTGTACTAAAAATTCTAGTAAAAT AACATAAAATTTAATTATTTTGAATTCTATGTAGGCCGACCACATGGACGTTATTCAAAAATCAA TCGTGTGCTAAGAACTCCGTAATTTTGGTGCTCCAAAAAAATATCAGAAATTTTCTAATTTTTAG GAGTTCGCTCATCACGGCAAATTTGCTAAATTTGCCGAATTTGCC Found at i:11228528 original size:9 final size:9 Alignment explanation
Indices: 11228513--11228549 Score: 60 Period size: 9 Copynumber: 4.1 Consensus size: 9 11228503 CTCATCACGG 11228513 CAAATTTGC 1 CAAATTTGC * 11228522 TAAATTTGC 1 CAAATTTGC * 11228531 CGAATTTGC 1 CAAATTTGC 11228540 CAAATTTGC 1 CAAATTTGC 11228549 C 1 C 11228550 GCACACTTCT Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 24 1.00 ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35 Consensus pattern (9 bp): CAAATTTGC Left flanking sequence: Indices 11228013 -- 11228512 CCTCCACCTACACCTCGACACCTCACACTTTAGTGATAGCGGTGCGAATTGGCTCTGAAGGAGAA GATGTGTCGTGCTCAGCGGGAGGGCGGGAGAATGATTTAGAGAGGAGTATCATGGGATTTGTCAG AGATTTTTCAACAAAAATTATAGTGAAAAAATTTACAATATTTTATTAGTTGGCAACTTTTTAGT AGCTTCTACAGCAGGAGTGTCCAGAAAACTTGCCAAATTTGCCGAATCCGGCAAATTTCGTAAAA GTATATTTTTGATATTCGCCGCACACCACAAAAAATTGGATTTTTTTAATTTGACAAAAACTATT GATTTTGTACTAAAAATTCTAGTAAAATAACATAAAATTTAATTATTTTGAATTCTATGTAGGCC GACCACATGGACGTTATTCAAAAATCAATCGTGTGCTAAGAACTCCGTAATTTTGGTGCTCCAAA AAAATATCAGAAATTTTCTAATTTTTAGGAGTTCGCTCATCACGG Right flanking sequence: Indices 11228550 -- 11229049 GCACACTTCTGCCCTACAGCAATCGCGTGACAGGAGTTATAAGTTTTAAGCCTTTCCTCATTTTT TTCCAATTGAAACTTGCATATGCAATGCAATTTCTGTTAATTAACAATTTTAAATATTTTTCCCA ACTGTCGAGATTCGAGAAATCGATTACTGACAAAATAATCATCACAAGTTCTCAACTTTTCAATG GCTTTTGCGGTTTTTATAGGGACGTGGTTCAAAGTGACGTCATCCCTTGACTTCCCATTTTTCCA ATATATCGTGTGTCCTCTGTTTTCCAAGCCACGTGGCAATGACTTTAGATGCGTATGTACTAAGA AATGTATCTAGATACCTGCCAAATTTGGAAGAGAAGGGTGTGTGTGTGTCTTACAGTTGAAAGAC GCGTGCCGCTTGGAGCTAAGATTCGAAGTTTCTGGAAAAAACTGAGAATTATTATTGCTATGGGC AACTTTGACAACTTTTTATTAGAGGTCCATTTAAGAAAATTAAGG Found at i:11228599 original size:7 final size:7 Alignment explanation
Indices: 11228584--11228599 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11228574 GCGTGACAGG 11228584 AGTTATA 1 AGTTATA * 11228591 AGTTTTA 1 AGTTATA 11228598 AG 1 AG 11228600 CCTTTCCTCA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44 Consensus pattern (7 bp): AGTTATA Left flanking sequence: Indices 11228084 -- 11228583 TCGTGCTCAGCGGGAGGGCGGGAGAATGATTTAGAGAGGAGTATCATGGGATTTGTCAGAGATTT TTCAACAAAAATTATAGTGAAAAAATTTACAATATTTTATTAGTTGGCAACTTTTTAGTAGCTTC TACAGCAGGAGTGTCCAGAAAACTTGCCAAATTTGCCGAATCCGGCAAATTTCGTAAAAGTATAT TTTTGATATTCGCCGCACACCACAAAAAATTGGATTTTTTTAATTTGACAAAAACTATTGATTTT GTACTAAAAATTCTAGTAAAATAACATAAAATTTAATTATTTTGAATTCTATGTAGGCCGACCAC ATGGACGTTATTCAAAAATCAATCGTGTGCTAAGAACTCCGTAATTTTGGTGCTCCAAAAAAATA TCAGAAATTTTCTAATTTTTAGGAGTTCGCTCATCACGGCAAATTTGCTAAATTTGCCGAATTTG CCAAATTTGCCGCACACTTCTGCCCTACAGCAATCGCGTGACAGG Right flanking sequence: Indices 11228600 -- 11229099 CCTTTCCTCATTTTTTTCCAATTGAAACTTGCATATGCAATGCAATTTCTGTTAATTAACAATTT TAAATATTTTTCCCAACTGTCGAGATTCGAGAAATCGATTACTGACAAAATAATCATCACAAGTT CTCAACTTTTCAATGGCTTTTGCGGTTTTTATAGGGACGTGGTTCAAAGTGACGTCATCCCTTGA CTTCCCATTTTTCCAATATATCGTGTGTCCTCTGTTTTCCAAGCCACGTGGCAATGACTTTAGAT GCGTATGTACTAAGAAATGTATCTAGATACCTGCCAAATTTGGAAGAGAAGGGTGTGTGTGTGTC TTACAGTTGAAAGACGCGTGCCGCTTGGAGCTAAGATTCGAAGTTTCTGGAAAAAACTGAGAATT ATTATTGCTATGGGCAACTTTGACAACTTTTTATTAGAGGTCCATTTAAGAAAATTAAGGAAAAA TCTTTTTCGGAAATTTTTTAGTAAATATGCCAAGCCAATTTTTAA Found at i:11229848 original size:9 final size:9 Alignment explanation
Indices: 11229826--11229849 Score: 34 Period size: 9 Copynumber: 2.9 Consensus size: 9 11229816 TTTCCCAAGC 11229826 TCGG-AAAA 1 TCGGCAAAA 11229834 -CGGCAAAA 1 TCGGCAAAA 11229842 TCGGCAAA 1 TCGGCAAA 11229850 CGACCAATTC Statistics Matches: 14, Mismatches: 0, Indels: 3 0.82 0.00 0.18 Matches are distributed among these distances: 7 3 0.21 8 4 0.29 9 7 0.50 ACGTcount: A:0.46, C:0.21, G:0.25, T:0.08 Consensus pattern (9 bp): TCGGCAAAA Left flanking sequence: Indices 11229326 -- 11229825 GTAACCTAATATAAAGTTGGCAAAAATTAATTTTCAGTTTTTTTTCTGAAACTTTGAAGCGTAGT TCTAAGCGGCACGCTTCTTTCAACCGTAACACACACACACACACCTCTATCTCCCAAATTTGGCA GATATCTATGTCTTGGTACATACGCATGCCAGGACACTTTTGGAATTGCCACGTGGCTTGGAAAA AGAGGACACACGATATAGTGGGGAACTGGACTGTAATAATGAAGGAATGACGTCAATGTTTTTCT GGTTATGATTTTTTACCCGGGACTTATTAAAGGTGTGCGGTGAATTTTTAAATTTACCGAGCTAC CGAGGCAAAATTCGGCAAACTCGGTAAATTTGCCGTGGTCATCATACTTGGTAAATCGCAATTTT TTTTGGAGCTCAAAAAGTGCCAAAATTAATGGCAAATTCGGCTCGACAAACTACAAATTCGGCAA ATTTCCCAATCTCAAAAAACGACAAAATGGGCAACTTTCCCAAGC Right flanking sequence: Indices 11229850 -- 11230349 CGACCAATTCGGCAAACGACAAGTTCGGCAAATTTCCCAAGCTCGGCAAACCACCAATTCGGCAA ATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCTCGGCAAACGGCAAAATCGG CAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCTCGGCAAACGGCGAAAT CGGCAAATTTGCCAAGCTCGACCAACGACCAATTTGGCAAACTCGGTAAATTTCCCAAACTCGGC AAAAGCCAAATTCGGCAAATTTGCCGAGCTCGGCAAGCGGCAAGTTCGGCAAACTCAGTAAATTT TCCGCACATCCCCAATTCGGAAACCTTATGGCAACTCCGAGATCAGGCGTATTTTAGACGTATAA CTGAAAAAGAAGAATTTTTCCCAAAAATAATTTATTTCCCTATCAAAAATCGATATTATGGCGAA AAAATGACAGATCTCAATTCAGGAAAATCGTTCTCAAACATGACA Found at i:11229973 original size:7 final size:7 Alignment explanation
Indices: 11229961--11229974 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11229951 TTGCCGAGCT 11229961 CGGCAAA 1 CGGCAAA 11229968 CGGCAAA 1 CGGCAAA 11229975 ATCGGCAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.29, T:0.00 Consensus pattern (7 bp): CGGCAAA Left flanking sequence: Indices 11229461 -- 11229960 CTATGTCTTGGTACATACGCATGCCAGGACACTTTTGGAATTGCCACGTGGCTTGGAAAAAGAGG ACACACGATATAGTGGGGAACTGGACTGTAATAATGAAGGAATGACGTCAATGTTTTTCTGGTTA TGATTTTTTACCCGGGACTTATTAAAGGTGTGCGGTGAATTTTTAAATTTACCGAGCTACCGAGG CAAAATTCGGCAAACTCGGTAAATTTGCCGTGGTCATCATACTTGGTAAATCGCAATTTTTTTTG GAGCTCAAAAAGTGCCAAAATTAATGGCAAATTCGGCTCGACAAACTACAAATTCGGCAAATTTC CCAATCTCAAAAAACGACAAAATGGGCAACTTTCCCAAGCTCGGAAAACGGCAAAATCGGCAAAC GACCAATTCGGCAAACGACAAGTTCGGCAAATTTCCCAAGCTCGGCAAACCACCAATTCGGCAAA TTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCT Right flanking sequence: Indices 11229975 -- 11230474 ATCGGCAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCTCGGCAAACGGC GAAATCGGCAAATTTGCCAAGCTCGACCAACGACCAATTTGGCAAACTCGGTAAATTTCCCAAAC TCGGCAAAAGCCAAATTCGGCAAATTTGCCGAGCTCGGCAAGCGGCAAGTTCGGCAAACTCAGTA AATTTTCCGCACATCCCCAATTCGGAAACCTTATGGCAACTCCGAGATCAGGCGTATTTTAGACG TATAACTGAAAAAGAAGAATTTTTCCCAAAAATAATTTATTTCCCTATCAAAAATCGATATTATG GCGAAAAAATGACAGATCTCAATTCAGGAAAATCGTTCTCAAACATGACAGTTTCATCCGACGGT CTTCTGGCTTTCAGCTTCTTCAGAACTTTCTCCGATTCTTGCTCCGAACTGTCACTATTACTGGT ACCTCCTCCTCCACTCTTCATATTCTTCTTACGGAACGCTTGAAC Found at i:11230075 original size:7 final size:7 Alignment explanation
Indices: 11230063--11230076 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11230053 TTGCCAAGCT 11230063 CGACCAA 1 CGACCAA 11230070 CGACCAA 1 CGACCAA 11230077 TTTGGCAAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.43, G:0.14, T:0.00 Consensus pattern (7 bp): CGACCAA Left flanking sequence: Indices 11229563 -- 11230062 AGGAATGACGTCAATGTTTTTCTGGTTATGATTTTTTACCCGGGACTTATTAAAGGTGTGCGGTG AATTTTTAAATTTACCGAGCTACCGAGGCAAAATTCGGCAAACTCGGTAAATTTGCCGTGGTCAT CATACTTGGTAAATCGCAATTTTTTTTGGAGCTCAAAAAGTGCCAAAATTAATGGCAAATTCGGC TCGACAAACTACAAATTCGGCAAATTTCCCAATCTCAAAAAACGACAAAATGGGCAACTTTCCCA AGCTCGGAAAACGGCAAAATCGGCAAACGACCAATTCGGCAAACGACAAGTTCGGCAAATTTCCC AAGCTCGGCAAACCACCAATTCGGCAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTT GCCGAGCTCGGCAAACGGCAAAATCGGCAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAA TTTGCCGAGCTCGGCAAACGGCGAAATCGGCAAATTTGCCAAGCT Right flanking sequence: Indices 11230077 -- 11230576 TTTGGCAAACTCGGTAAATTTCCCAAACTCGGCAAAAGCCAAATTCGGCAAATTTGCCGAGCTCG GCAAGCGGCAAGTTCGGCAAACTCAGTAAATTTTCCGCACATCCCCAATTCGGAAACCTTATGGC AACTCCGAGATCAGGCGTATTTTAGACGTATAACTGAAAAAGAAGAATTTTTCCCAAAAATAATT TATTTCCCTATCAAAAATCGATATTATGGCGAAAAAATGACAGATCTCAATTCAGGAAAATCGTT CTCAAACATGACAGTTTCATCCGACGGTCTTCTGGCTTTCAGCTTCTTCAGAACTTTCTCCGATT CTTGCTCCGAACTGTCACTATTACTGGTACCTCCTCCTCCACTCTTCATATTCTTCTTACGGAAC GCTTGAACTCGTGACCAATAGAATTCGGCGAATAGAATGATCAGGACACCGAGCCCAATTTGCAG TGTTAGCAGACCGAGCGCGTTTGCATCACACCGGGTTCCACGTGC Found at i:11230152 original size:7 final size:7 Alignment explanation
Indices: 11230140--11230153 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11230130 TTGCCGAGCT 11230140 CGGCAAG 1 CGGCAAG 11230147 CGGCAAG 1 CGGCAAG 11230154 TTCGGCAAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.43, T:0.00 Consensus pattern (7 bp): CGGCAAG Left flanking sequence: Indices 11229640 -- 11230139 TACCGAGCTACCGAGGCAAAATTCGGCAAACTCGGTAAATTTGCCGTGGTCATCATACTTGGTAA ATCGCAATTTTTTTTGGAGCTCAAAAAGTGCCAAAATTAATGGCAAATTCGGCTCGACAAACTAC AAATTCGGCAAATTTCCCAATCTCAAAAAACGACAAAATGGGCAACTTTCCCAAGCTCGGAAAAC GGCAAAATCGGCAAACGACCAATTCGGCAAACGACAAGTTCGGCAAATTTCCCAAGCTCGGCAAA CCACCAATTCGGCAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCTCGGC AAACGGCAAAATCGGCAAATTTGCCAAGGTCCACAAATGGCAAATTCGGCAAATTTGCCGAGCTC GGCAAACGGCGAAATCGGCAAATTTGCCAAGCTCGACCAACGACCAATTTGGCAAACTCGGTAAA TTTCCCAAACTCGGCAAAAGCCAAATTCGGCAAATTTGCCGAGCT Right flanking sequence: Indices 11230154 -- 11230653 TTCGGCAAACTCAGTAAATTTTCCGCACATCCCCAATTCGGAAACCTTATGGCAACTCCGAGATC AGGCGTATTTTAGACGTATAACTGAAAAAGAAGAATTTTTCCCAAAAATAATTTATTTCCCTATC AAAAATCGATATTATGGCGAAAAAATGACAGATCTCAATTCAGGAAAATCGTTCTCAAACATGAC AGTTTCATCCGACGGTCTTCTGGCTTTCAGCTTCTTCAGAACTTTCTCCGATTCTTGCTCCGAAC TGTCACTATTACTGGTACCTCCTCCTCCACTCTTCATATTCTTCTTACGGAACGCTTGAACTCGT GACCAATAGAATTCGGCGAATAGAATGATCAGGACACCGAGCCCAATTTGCAGTGTTAGCAGACC GAGCGCGTTTGCATCACACCGGGTTCCACGTGCCAGTTTCTGGAAATAATCGATAAAAATTGCTG AAATCGGCAAAATTTTACGTAAATCAATATCATTAGTAGAAAATC Found at i:11230916 original size:7 final size:7 Alignment explanation
Indices: 11230904--11230917 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11230894 AGTGATAAGA 11230904 AATGATG 1 AATGATG 11230911 AATGATG 1 AATGATG 11230918 TGAATGGTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): AATGATG Left flanking sequence: Indices 11230404 -- 11230903 TGCTCCGAACTGTCACTATTACTGGTACCTCCTCCTCCACTCTTCATATTCTTCTTACGGAACGC TTGAACTCGTGACCAATAGAATTCGGCGAATAGAATGATCAGGACACCGAGCCCAATTTGCAGTG TTAGCAGACCGAGCGCGTTTGCATCACACCGGGTTCCACGTGCCAGTTTCTGGAAATAATCGATA AAAATTGCTGAAATCGGCAAAATTTTACGTAAATCAATATCATTAGTAGAAAATCAATAATTTCT GAAAATTATCGATTTTTCAACTCACCGCCGCCGCCGAAAACGTTGCAATAAACGGAAGAATGAGC TGAAGCATCTGCGACGAGCACACGGCAACCCAACACGGCGTCCATCGATTCAAAATTTTGAATCC CGACAGATAAGCGTACAAAAAGACGTGGGCGGTCAAATTGAAGAACACAATCCATCGATGAAGTG CGAAATTTTGAGAATAAAATGTGAAGGCGAACGAAAGTGATAAGA Right flanking sequence: Indices 11230918 -- 11231417 TGAATGGTTAGTGGACGACGAGCATCGTAAAGAAGAAGCATCGTTTCGAGGAGGTCGACGACTTT TGTGAACGTCCAGATTGCTACTACACTTCCGGAGAAGAATCCTGAAAAAAAATTAGAAATTTCAA ATATTTACCGGCAAAATTATCGATTTTTAAAAGAAAACTATTGATTTATTTGCAAAAAAACGTAT TTTTTGGAGATCTCCGCTTTTTCGGGACATAATTCTTCGTAACTTTTTTTCGAAATTTTCAAGAG GTTATCGATTATTTTTGTTGGAAAAACACGGGGTTCTGGCCTTCCTCACTACATTTTTCGCGCTC CATTGACAATCGCCAGCCGGACAACGCGTGGGAAAGTCGTGTACTCCACACGGACATATACATTT AGTTTTACAATCGAGCCGCGACGCGACACGCAACGCGCCGTAAATGTACCCCAGATAAGGCCGAG CCAAAATGGCCTAGTTTGGCACAAACTCTTCCATTTCAATTTCTG Found at i:11232150 original size:9 final size:9 Alignment explanation
Indices: 11232136--11232153 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11232126 GGCCGCTTGT 11232136 ACCAGGAAA 1 ACCAGGAAA 11232145 ACCAGGAAA 1 ACCAGGAAA 11232154 TTGTCGGCTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00 Consensus pattern (9 bp): ACCAGGAAA Left flanking sequence: Indices 11231636 -- 11232135 TTGGAAGACACAATTGTAATAGTACCTACAATAAATTAGATGTGAAACTAACTAATTGGCAACTA ATTTAATTTTACCATTCTTTGAGGTAAGATCTGTCGGAAATGTGTGATGGGCGAAAGTTGAACGC GACGAAAACGTAGAAAATTCCGAGAAGATGGATCGGAAGAAGAGACCAATTTATTGTTGATGAAA GCCATGAATATGGGAACTGAAAAATTATCGATTTTTTTTCAAAAAGAAATCAGTCCCTAAAAATC ATTTTAAAAAACTAACCATTTTGTCTTTAGTAGAATTTCTAGTAAACTGCAAAACGAAATAAATG GGATTTTGATTTGAAATTTTTTTGAAACAAGAAATCGGGCAAACACGTGTAATCGGTTTTTGGGA GTTCATCATTTAAAATAGTTTTTTTTTCAAAAAAGAGAAAAGATTTCGGCAATTCTTATTTTTAA GCATATTTTGTTTATTTTCCAACCTGTATACTGTCGGCCGCTTGT Right flanking sequence: Indices 11232154 -- 11232653 TTGTCGGCTGCAAATTTAGATGTCCAGGGGGATGTCGGCTGCAAACCAGCCCTGTGCGGCACTCG GTAATTTTTTTCGGAGTGTTTTGAAAAAATTGCGGTTTTAGGCATAAAATTTATAATAATATGTG ATATGTCTGCTGCACCGAATTTTAAAGGCAAAATTTAATTTTTTATTTAGATTTCACAAATCACT CCAAATCCAAAATAGTCGACGGCAAGTCCCTAGGTAACGGTGGTACAGCATAAGATGGAGGTCTC GAGGTGAATGTTGATACTTTTCTGACTTGAGTGGATACTTTGCACGGAAGAATGTCATCCAACTC CCGATATTGACGAATTTGAATAATTCTTCCATCAAATGCTCTTCGCTGGATTGTTGTCGTTTTTG AGGGCAGCGCGTCCAATGGGAAGGCGGTGGACCTGAAAAAAACCGGTGGGATTACTGTCGGGTAC TGTAGGGGTACTATAGGAGTACTGTAGGGGCACTGAATTGGTACT Found at i:11232983 original size:11 final size:10 Alignment explanation
Indices: 11232963--11232987 Score: 34 Period size: 11 Copynumber: 2.4 Consensus size: 10 11232953 AATTTTTAAA 11232963 CAAATTTTTT 1 CAAATTTTTT * 11232973 GAAATTGTTTT 1 CAAATT-TTTT 11232984 CAAA 1 CAAA 11232988 CCTCATAAAT Statistics Matches: 12, Mismatches: 2, Indels: 1 0.80 0.13 0.07 Matches are distributed among these distances: 10 5 0.42 11 7 0.58 ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48 Consensus pattern (10 bp): CAAATTTTTT Left flanking sequence: Indices 11232463 -- 11232962 GAATGTCATCCAACTCCCGATATTGACGAATTTGAATAATTCTTCCATCAAATGCTCTTCGCTGG ATTGTTGTCGTTTTTGAGGGCAGCGCGTCCAATGGGAAGGCGGTGGACCTGAAAAAAACCGGTGG GATTACTGTCGGGTACTGTAGGGGTACTATAGGAGTACTGTAGGGGCACTGAATTGGTACTGTAG TGGTATGAAAGGGGTACTATAGGGGTACTGTAAGGGTACCCTAGGGGTAATGTAGGGGTACTATA GAGGTACTTAATTATTCCAATAAACATCTAGTTTTTTTTCTTAAAAATTTGAATTTCATCTGAAC TTTATTCAAAACCTAAAACTTGATTTTTGCGCAAAAAGTGGACGGGACTTACATCTGTGGGCAGT CTTTATTAGTGATGCATCTCATTCGATTTAATTGTATAAAACAGTCCTCTCCGTTAACCTGAAAA TTTGAATTTTTGACAAAGTCGGAAATTGAAAAAATAATTTTTAAA Right flanking sequence: Indices 11232988 -- 11233487 CCTCATAAATAATAGCCGGCATAGCTCTATGATGATGTAAAATAATCGTGTGTAATATGTATAAA AACATGGGAAAGTTGAAGTTAGGGAACAAAATTTGGAAGCCGAATATGGTCTGAGGGCAGTAGAT TCCGAATGAGACGTCCAGAAGCTCGATCTGAAAAAAAAAGTTTTTTTGAAACATTTCCCTTTGAA AAGGTTTTTTTGCTCATTAAAACCTACCAAAACTGTCGAGAAATAGAAATAAATCGATATAAAAG TTAGAATCATCGAGCGATTATACAGGTAGTGCCTTCGTTGAACAGCGTTGTAGATTAATCTGAAA TGTTTAGGTTTTAAAATGACTTTTTTGGAATTTTCAATCAAAAATTTGAATTTCTCATCAAATTT TACTACTAGAAGTATTTTTCGCAATGCGGAAACTTCCATTTTGTGAGATTAGGGGGAAGCAGCCG ACGCCTCACGGGTTGGTAGGCAGTGTTGGCGGCCGACATTTCGAT Found at i:11233244 original size:10 final size:10 Alignment explanation
Indices: 11233223--11233245 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 11233213 AACTGTCGAG 11233223 AAATAGAAAT 1 AAATAGAAAT * * 11233233 AAATCGATAT 1 AAATAGAAAT 11233243 AAA 1 AAA 11233246 AGTTAGAATC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.65, C:0.04, G:0.09, T:0.22 Consensus pattern (10 bp): AAATAGAAAT Left flanking sequence: Indices 11232723 -- 11233222 GAGGTACTTAATTATTCCAATAAACATCTAGTTTTTTTTCTTAAAAATTTGAATTTCATCTGAAC TTTATTCAAAACCTAAAACTTGATTTTTGCGCAAAAAGTGGACGGGACTTACATCTGTGGGCAGT CTTTATTAGTGATGCATCTCATTCGATTTAATTGTATAAAACAGTCCTCTCCGTTAACCTGAAAA TTTGAATTTTTGACAAAGTCGGAAATTGAAAAAATAATTTTTAAACAAATTTTTTGAAATTGTTT TCAAACCTCATAAATAATAGCCGGCATAGCTCTATGATGATGTAAAATAATCGTGTGTAATATGT ATAAAAACATGGGAAAGTTGAAGTTAGGGAACAAAATTTGGAAGCCGAATATGGTCTGAGGGCAG TAGATTCCGAATGAGACGTCCAGAAGCTCGATCTGAAAAAAAAAGTTTTTTTGAAACATTTCCCT TTGAAAAGGTTTTTTTGCTCATTAAAACCTACCAAAACTGTCGAG Right flanking sequence: Indices 11233246 -- 11233745 AGTTAGAATCATCGAGCGATTATACAGGTAGTGCCTTCGTTGAACAGCGTTGTAGATTAATCTGA AATGTTTAGGTTTTAAAATGACTTTTTTGGAATTTTCAATCAAAAATTTGAATTTCTCATCAAAT TTTACTACTAGAAGTATTTTTCGCAATGCGGAAACTTCCATTTTGTGAGATTAGGGGGAAGCAGC CGACGCCTCACGGGTTGGTAGGCAGTGTTGGCGGCCGACATTTCGATAACTTGCAGCTGACGTTT TATGAGCGGATGCAACCGACATCTCGCGGTTTGGTAGTTGGCGACCAATAGGTTCTCAGCCGACA CCTCACGGTTTTACAATTAGCAGCCGACGTCTCACCGGGTTTCTGCTGGCAGCCGACACTTCACA AGCCCGCTAATTTGCAAACTTGTCCAACTCGCCTGCTTAGTTTCGAAAAATCTTTGGCATACGGA TAAAAAGCGATAGACGTCGACGCAAATATAATCACAAGAAATACA Found at i:11236039 original size:8 final size:9 Alignment explanation
Indices: 11236017--11236040 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 11236007 TCGTTCTGGA 11236017 ATTTTTTGG 1 ATTTTTTGG 11236026 ATTTTTTGG 1 ATTTTTTGG 11236035 ATTTTT 1 ATTTTT 11236041 CAGGCGGTGC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.12, C:0.00, G:0.17, T:0.71 Consensus pattern (9 bp): ATTTTTTGG Left flanking sequence: Indices 11235517 -- 11236016 GAATTATCAACAATATAATTATTATCCAGAAGGCCTTCAACACGAAAAACCTCGTAGTGGTGGTT GATGGAGGGCTCCAGGTGCAGTTGCCAGCCGTCTAAAAATTAATTTTAATTTTGACACGAAAATC GAGAAATTTAAATGAAAAAAGTTTTTTAAAAATTGAATTTTGTTGATTTTCACCCAAAAATTTCT AAATTTTCATATGCAATCAGTGGGAAAAATGAATTTTTCTGGTTTTTTCTCAATATTTCTCCATT TCAAACCTTCTTTCAACACGCCATTCCGGGAATTCCGCGCGTAAAAAACCCGCTTCACACGAAAA TGCACCAAAGCCATTGAGCACATTGCACAGGGCTCCGTGATGAGGAAAACGTCGGATCCGGTGCC AAGATAGTCATCGCCGTGTCTTTTCGGCAGATTTCCAACCATTTCCATTACCGGGTGGCCGAGTG GATGGGAAGACGGGCGGCCCGTGGAGAGGAGCTCGTCGTTCTGGA Right flanking sequence: Indices 11236041 -- 11236540 CAGGCGGTGCAAATTACCTGCACAGCTATACAACCATCCCCCAGCCGAGCAGCTTCGCCGAGCCA TCGATCCACGTATTTTTTCAGCGATTCTGTGAGAAAAGAGCCGTCTAGAAGTTGCTCGAGCTCAT GATTCGGGTGAAATCCTGTTGGCCAGAGCTCCTTAGCCACTTGGAATTGCCGTCGGGTCTGTGGC TTGGTTCTCGCGACTTTTACTGGCTGAAAATTGAAAAATTAGGAATTTTCAGATTTTTTTTGATT TTCTACCACTAAATCTTCCACCCGAGCTTCTGCGTCCTCCAACTTTCCCACGATAAGCTTTGCGA CTTCCTCCGACTCTGCTATCAGCACACTTCCGTCTTTTCCGACTCTTTTCAAGTGTGAAAGCTCT TCTGGAAGTTCTGGAAGTCGCCTGATAATCTGAAAATATAGAATTTCGACTAATTTTGGGGAAAG GGTAAGTTTCCCTACTGTCCCAATAATTTTCTTGTTTTCAAGTCG Found at i:11236444 original size:9 final size:9 Alignment explanation
Indices: 11236430--11236448 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11236420 GTGAAAGCTC 11236430 TTCTGGAAG 1 TTCTGGAAG 11236439 TTCTGGAAG 1 TTCTGGAAG 11236448 T 1 T 11236449 CGCCTGATAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37 Consensus pattern (9 bp): TTCTGGAAG Left flanking sequence: Indices 11235930 -- 11236429 TCGGCAGATTTCCAACCATTTCCATTACCGGGTGGCCGAGTGGATGGGAAGACGGGCGGCCCGTG GAGAGGAGCTCGTCGTTCTGGAATTTTTTGGATTTTTTGGATTTTTCAGGCGGTGCAAATTACCT GCACAGCTATACAACCATCCCCCAGCCGAGCAGCTTCGCCGAGCCATCGATCCACGTATTTTTTC AGCGATTCTGTGAGAAAAGAGCCGTCTAGAAGTTGCTCGAGCTCATGATTCGGGTGAAATCCTGT TGGCCAGAGCTCCTTAGCCACTTGGAATTGCCGTCGGGTCTGTGGCTTGGTTCTCGCGACTTTTA CTGGCTGAAAATTGAAAAATTAGGAATTTTCAGATTTTTTTTGATTTTCTACCACTAAATCTTCC ACCCGAGCTTCTGCGTCCTCCAACTTTCCCACGATAAGCTTTGCGACTTCCTCCGACTCTGCTAT CAGCACACTTCCGTCTTTTCCGACTCTTTTCAAGTGTGAAAGCTC Right flanking sequence: Indices 11236449 -- 11236948 CGCCTGATAATCTGAAAATATAGAATTTCGACTAATTTTGGGGAAAGGGTAAGTTTCCCTACTGT CCCAATAATTTTCTTGTTTTCAAGTCGTAAAGCTTGGAAGGAAGTCGATGGGATTGTGTCGCAAG TGAGAGTTGAATCCAGAATTGGGTAGACTTTAATTCTGGAATTTTGTTGTTGTTTTTGAGGATTT TTGAGGATTTTTATTTCAAAAATGGTTTTTACGGCTTACCTCATCGTATCGATTTTTCTAATTTT TTCCGGAGGCTCTTCCAGTGACATTTTCCTTGCAAATCTGAAAAAAAACTGTTTAAAAATAGATA AAACGGCAAAAATTAAATAAATAAATCCAAAAAATAAATATGGAAAAAAGTGTGCGGCGGCATTG CCTGCCTCCGCCCCGCCCACATTTCCGCGCCGCACCCGAATCATGTGCATTTTGCAGCTGTTTAT TTATTTTTAATCCCGTCACTTTTATCAATTTTCGTCGGTTTTTCC Found at i:11236654 original size:9 final size:10 Alignment explanation
Indices: 11236631--11236655 Score: 50 Period size: 10 Copynumber: 2.5 Consensus size: 10 11236621 TTTGTTGTTG 11236631 TTTTTGAGGA 1 TTTTTGAGGA 11236641 TTTTTGAGGA 1 TTTTTGAGGA 11236651 TTTTT 1 TTTTT 11236656 ATTTCAAAAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 15 1.00 ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60 Consensus pattern (10 bp): TTTTTGAGGA Left flanking sequence: Indices 11236131 -- 11236630 TCTGTGAGAAAAGAGCCGTCTAGAAGTTGCTCGAGCTCATGATTCGGGTGAAATCCTGTTGGCCA GAGCTCCTTAGCCACTTGGAATTGCCGTCGGGTCTGTGGCTTGGTTCTCGCGACTTTTACTGGCT GAAAATTGAAAAATTAGGAATTTTCAGATTTTTTTTGATTTTCTACCACTAAATCTTCCACCCGA GCTTCTGCGTCCTCCAACTTTCCCACGATAAGCTTTGCGACTTCCTCCGACTCTGCTATCAGCAC ACTTCCGTCTTTTCCGACTCTTTTCAAGTGTGAAAGCTCTTCTGGAAGTTCTGGAAGTCGCCTGA TAATCTGAAAATATAGAATTTCGACTAATTTTGGGGAAAGGGTAAGTTTCCCTACTGTCCCAATA ATTTTCTTGTTTTCAAGTCGTAAAGCTTGGAAGGAAGTCGATGGGATTGTGTCGCAAGTGAGAGT TGAATCCAGAATTGGGTAGACTTTAATTCTGGAATTTTGTTGTTG Right flanking sequence: Indices 11236656 -- 11237155 ATTTCAAAAATGGTTTTTACGGCTTACCTCATCGTATCGATTTTTCTAATTTTTTCCGGAGGCTC TTCCAGTGACATTTTCCTTGCAAATCTGAAAAAAAACTGTTTAAAAATAGATAAAACGGCAAAAA TTAAATAAATAAATCCAAAAAATAAATATGGAAAAAAGTGTGCGGCGGCATTGCCTGCCTCCGCC CCGCCCACATTTCCGCGCCGCACCCGAATCATGTGCATTTTGCAGCTGTTTATTTATTTTTAATC CCGTCACTTTTATCAATTTTCGTCGGTTTTTCCGAGATTTCTCACATTTTTTCAATTCTCAATCT TCTTTCCACCTTATTTCATCGATTTATTGCGAAAATTCCAGAAGAAAATGGGCAACAATCAGTCT GGAGGGCCCGACGCCCGCTATGGAGGCCCAAACGACAAGGCGGGCCTCCGAAGGCATCGGATGAT GAGCGAAACGGCAAAAATCGCCGGACAAGTACTCCCGAACCCGGA Found at i:11237208 original size:10 final size:10 Alignment explanation
Indices: 11237193--11237212 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11237183 GAGATTTTCA 11237193 CAAAAAATCC 1 CAAAAAATCC * 11237203 CAAAAATTCC 1 CAAAAAATCC 11237213 TTTTTTAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15 Consensus pattern (10 bp): CAAAAAATCC Left flanking sequence: Indices 11236693 -- 11237192 CGATTTTTCTAATTTTTTCCGGAGGCTCTTCCAGTGACATTTTCCTTGCAAATCTGAAAAAAAAC TGTTTAAAAATAGATAAAACGGCAAAAATTAAATAAATAAATCCAAAAAATAAATATGGAAAAAA GTGTGCGGCGGCATTGCCTGCCTCCGCCCCGCCCACATTTCCGCGCCGCACCCGAATCATGTGCA TTTTGCAGCTGTTTATTTATTTTTAATCCCGTCACTTTTATCAATTTTCGTCGGTTTTTCCGAGA TTTCTCACATTTTTTCAATTCTCAATCTTCTTTCCACCTTATTTCATCGATTTATTGCGAAAATT CCAGAAGAAAATGGGCAACAATCAGTCTGGAGGGCCCGACGCCCGCTATGGAGGCCCAAACGACA AGGCGGGCCTCCGAAGGCATCGGATGATGAGCGAAACGGCAAAAATCGCCGGACAAGTACTCCCG AACCCGGATGGAGGACCGCCGATGATTTTTGATGTGAGATTTTCA Right flanking sequence: Indices 11237213 -- 11237712 TTTTTTAAATTATTTTTCAATATTTTCAGGACGGAAATGAGGACAAATCCGGCGAATGCCCAGTG GTATTCCGCTGGAGTTTCACACAAAACGCACAGCCACGTGTCGTCCATATCGTTGGATCATGGGA TAACTGGCAGACGCGGATCCCGATGGTAAAGTCGACAAACGACTTTTCGACAATCATCGACCTGC AACCCGGACAATACGAGTACAAATTCCAAGTGGACGGCTCGTGGGTCGTCGACGATAATCAGGGA AAGGCACAGGACGTTCATGGAAATGAGAACAATATGATCAATATTCAAGACTCGGATTTTGCAGT TTTCGAAGCGCTGGATGAAGACTTCCAGTCATCTACAGCCGGGGAGGTGCTCCGTGGCGAGTCGG AGAGCACCAAGAATCATGATACTCCGAATGACAGGTGAGAAAACTTCAGAAATGTTCACTAAAAA ACTAAAAAAAACTTTTTCAGAGAGCTCGAAAAACTGCGCTCCTTC Found at i:11237673 original size:8 final size:8 Alignment explanation
Indices: 11237660--11237676 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 11237650 AGAAATGTTC 11237660 ACTAAAAA 1 ACTAAAAA 11237668 ACTAAAAA 1 ACTAAAAA 11237676 A 1 A 11237677 AACTTTTTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12 Consensus pattern (8 bp): ACTAAAAA Left flanking sequence: Indices 11237160 -- 11237659 GGACCGCCGATGATTTTTGATGTGAGATTTTCACAAAAAATCCCAAAAATTCCTTTTTTAAATTA TTTTTCAATATTTTCAGGACGGAAATGAGGACAAATCCGGCGAATGCCCAGTGGTATTCCGCTGG AGTTTCACACAAAACGCACAGCCACGTGTCGTCCATATCGTTGGATCATGGGATAACTGGCAGAC GCGGATCCCGATGGTAAAGTCGACAAACGACTTTTCGACAATCATCGACCTGCAACCCGGACAAT ACGAGTACAAATTCCAAGTGGACGGCTCGTGGGTCGTCGACGATAATCAGGGAAAGGCACAGGAC GTTCATGGAAATGAGAACAATATGATCAATATTCAAGACTCGGATTTTGCAGTTTTCGAAGCGCT GGATGAAGACTTCCAGTCATCTACAGCCGGGGAGGTGCTCCGTGGCGAGTCGGAGAGCACCAAGA ATCATGATACTCCGAATGACAGGTGAGAAAACTTCAGAAATGTTC Right flanking sequence: Indices 11237677 -- 11238176 AACTTTTTCAGAGAGCTCGAAAAACTGCGCTCCTTCACCCAAGAGATCCCATCAATGGATATGCT TCGGAAGGCAGCCGGACCACCAGTAATTCCACCACAACTCATGCAGGTGCTTCTCAACAAGGAGA CGCCCGAGTCATGCGATCCGAATGTGCTGCCGGAGCCGAATCATGTGATGCTCAACCACATGTAC GCGCTCTCCATCAAGGACAGCGTTATGGTGCTCTCATCGACGCAACGCTATCGCAAGAAGTTCGT CACCACTCTTCTCTACAAGCCTGTCTAACTGTTTTTCTTGTTTTGTGGGGTTTTTTGTTGAAAAA AATCGAAAAAAATGCCCTGACTAATCAGCGATTAGCTCCGCCCACTATTGAACCAATCATACTGC GGTACGGTTTTTCCTATTTTTAATTCAAAATTTCTTGATTTCGCTCGATTATATTCTTTTAAAAA AAGTGTTTTTAACTATTTTTAAATAGAAATCTACCATTTTTCCCA Found at i:11239006 original size:10 final size:10 Alignment explanation
Indices: 11238991--11239015 Score: 43 Period size: 10 Copynumber: 2.5 Consensus size: 10 11238981 TTCCACTTTC 11238991 TTTTTTGATT 1 TTTTTTGATT * 11239001 TTTTTTTATT 1 TTTTTTGATT 11239011 TTTTT 1 TTTTT 11239016 CGCCTCAAAA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.08, C:0.00, G:0.04, T:0.88 Consensus pattern (10 bp): TTTTTTGATT Left flanking sequence: Indices 11238491 -- 11238990 AAATTTTCTCCCACTCTTTAGTTTTTGTATTATAGTCGCCTCTTTTTCCCCCATTAATTTTCTTT CTGTTCTATTTCCAATAGTGTTTTAAGAAACGAAAAACGTCGTAGCCAACTCTTATTTAATACGG TCTGCCCCCTTGGAACCCACTTTTACCACACTACCAATCAGCTGAGTGTATATACCAATTCTCAA TGTTTCCCTGCCCCTTTTCTTCTTCTTCTACTTCCAACAGCTTTATTTTTCCTATTTTTCTCGTA TTTTTCTTGGGCTTTCATGTAGGCGACCTCCGCCTGCCTCCCGCCAAAAATTCACGTCAAAACGC AGAGAATAGGCAAAAGTGAGGCGGACAGGTTTCAGGCAGACGTCTGAAACCGCGCCTGCCTACCA TGGAAGCCCTAATTTTTGAAATCAGTTTCTTTTAAAAAATCCACTGTGAATAATTTGACATTCCA ATTTGTTCACCATCTCCCTCGTTTCTTGTTTTTTTTTCCACTTTC Right flanking sequence: Indices 11239016 -- 11239515 CGCCTCAAAAAAGATTCTGTCTCGTAGTTTTCTGTCCCTTTAATACATTTTTCATCGATTTTTCC CCTTTTGCTGGCTTGAGCTACAGTAGCCGTTTCGCACGGTACTTGTATATCTATGTTTGTGTGTG TTTTTTTTTAATTGAAAATTGTGCTCGCCCACGCTTGATGCTTTTAGTGCTTTTTAATCATTTTT TAGCTGAAAATCTTCGTCATTTGACTCTGTAACTGCGAATTTCGATTTTTTGCGACAAAAATAGG GATTTTTAGCTAAAAAATCCCACGTTTAGTCGTTTTTTTTAGGAAAAAATTCACCAAAACTAAAT TTGCACTGAAAATAAACTTCAAAATGCGGATTTTTAGGCCAAAAAATAATAAAATCAATGATTTT CTGATCAAAAAAATCGATTTCAGAGCGGAAATTTGCCTGAAACTCGTAAAATGTATACCAAAATC GAAATTTAACTAAAAATCCACATAAAAATGCAGATTTTAATCTAA Found at i:11239697 original size:8 final size:9 Alignment explanation
Indices: 11239686--11239703 Score: 29 Period size: 9 Copynumber: 2.1 Consensus size: 9 11239676 TGTTTTTCAC 11239686 TGAG-ATTT 1 TGAGCATTT 11239694 TGAGCATTT 1 TGAGCATTT 11239703 T 1 T 11239704 CACTTTTAAT Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 8 4 0.44 9 5 0.56 ACGTcount: A:0.22, C:0.06, G:0.22, T:0.50 Consensus pattern (9 bp): TGAGCATTT Left flanking sequence: Indices 11239186 -- 11239685 CTTTTAGTGCTTTTTAATCATTTTTTAGCTGAAAATCTTCGTCATTTGACTCTGTAACTGCGAAT TTCGATTTTTTGCGACAAAAATAGGGATTTTTAGCTAAAAAATCCCACGTTTAGTCGTTTTTTTT AGGAAAAAATTCACCAAAACTAAATTTGCACTGAAAATAAACTTCAAAATGCGGATTTTTAGGCC AAAAAATAATAAAATCAATGATTTTCTGATCAAAAAAATCGATTTCAGAGCGGAAATTTGCCTGA AACTCGTAAAATGTATACCAAAATCGAAATTTAACTAAAAATCCACATAAAAATGCAGATTTTAA TCTAAAAATCGTTCAAATTACCTTTTTGTCAGTAGAAAATCGAATTTTCATTGAAAAAACCGATT TCAGAGCGAAAAACCATAAAATTCCCTACAAAAAACGGGCTTTTGCAAGCTAAAAATTCGATTTT TAGCCGATTTTCTAGTGAAAATCACTCTATTTTCATGTTTTTCAC Right flanking sequence: Indices 11239704 -- 11240203 CACTTTTAATTCGATTAGTTTCCACACATTTTGGCAACAAAAAAGAAAAAAGCCAGCGTTATTTG TTTATTTTCGAACATTTTTCGCCTCGTTTTTACTTTTTTTTTCGTTCTGTTTTCTGTTTTTCCTC GTGTCGCGAAGCAATTGTTTTTGTTTTTTTCGGTCTCTTTCAGTTGACTTTTCCTTCTCCTCTGC CACCAGCCAACAACAACAAATATGCCAAAGAGAACTGGATTTCGATGTGTTATTTTCATCGTTTT TTCGCTGAAATTCGCCGTTTTGAGCTCGAAAAATGAATTTTTGGAGAAAAAAAGCTTTAAAAAAT TAGCAAAAAATTGAAAACCTTGAAAAATTGCCAAAAACAGAGGTTTTTGACTCAATTTTTCGAGT TAAAATGATTAAAACTTGCCAAAAAATCAGATTTTAACTTGAAATTAGGAAAAACTTATATTTTA AAGTCAAAACTTGACTTTAAAATATCAATTCTAAATAATTTTAAG Found at i:11239754 original size:7 final size:7 Alignment explanation
Indices: 11239742--11239755 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11239732 TTTTGGCAAC 11239742 AAAAAAG 1 AAAAAAG 11239749 AAAAAAG 1 AAAAAAG 11239756 CCAGCGTTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (7 bp): AAAAAAG Left flanking sequence: Indices 11239242 -- 11239741 ACTGCGAATTTCGATTTTTTGCGACAAAAATAGGGATTTTTAGCTAAAAAATCCCACGTTTAGTC GTTTTTTTTAGGAAAAAATTCACCAAAACTAAATTTGCACTGAAAATAAACTTCAAAATGCGGAT TTTTAGGCCAAAAAATAATAAAATCAATGATTTTCTGATCAAAAAAATCGATTTCAGAGCGGAAA TTTGCCTGAAACTCGTAAAATGTATACCAAAATCGAAATTTAACTAAAAATCCACATAAAAATGC AGATTTTAATCTAAAAATCGTTCAAATTACCTTTTTGTCAGTAGAAAATCGAATTTTCATTGAAA AAACCGATTTCAGAGCGAAAAACCATAAAATTCCCTACAAAAAACGGGCTTTTGCAAGCTAAAAA TTCGATTTTTAGCCGATTTTCTAGTGAAAATCACTCTATTTTCATGTTTTTCACTGAGATTTTGA GCATTTTCACTTTTAATTCGATTAGTTTCCACACATTTTGGCAAC Right flanking sequence: Indices 11239756 -- 11240255 CCAGCGTTATTTGTTTATTTTCGAACATTTTTCGCCTCGTTTTTACTTTTTTTTTCGTTCTGTTT TCTGTTTTTCCTCGTGTCGCGAAGCAATTGTTTTTGTTTTTTTCGGTCTCTTTCAGTTGACTTTT CCTTCTCCTCTGCCACCAGCCAACAACAACAAATATGCCAAAGAGAACTGGATTTCGATGTGTTA TTTTCATCGTTTTTTCGCTGAAATTCGCCGTTTTGAGCTCGAAAAATGAATTTTTGGAGAAAAAA AGCTTTAAAAAATTAGCAAAAAATTGAAAACCTTGAAAAATTGCCAAAAACAGAGGTTTTTGACT CAATTTTTCGAGTTAAAATGATTAAAACTTGCCAAAAAATCAGATTTTAACTTGAAATTAGGAAA AACTTATATTTTAAAGTCAAAACTTGACTTTAAAATATCAATTCTAAATAATTTTAAGCTAAAAT CTAGTTGAAACGCAAGTTTTAAATGTTTAAATTCAAAAATTGATT Found at i:11239823 original size:7 final size:7 Alignment explanation
Indices: 11239813--11239828 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11239803 TTTTTTTTCG 11239813 TTCTGTT 1 TTCTGTT 11239820 TTCTGTT 1 TTCTGTT 11239827 TT 1 TT 11239829 TCCTCGTGTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.12, G:0.12, T:0.75 Consensus pattern (7 bp): TTCTGTT Left flanking sequence: Indices 11239313 -- 11239812 TTTAGGAAAAAATTCACCAAAACTAAATTTGCACTGAAAATAAACTTCAAAATGCGGATTTTTAG GCCAAAAAATAATAAAATCAATGATTTTCTGATCAAAAAAATCGATTTCAGAGCGGAAATTTGCC TGAAACTCGTAAAATGTATACCAAAATCGAAATTTAACTAAAAATCCACATAAAAATGCAGATTT TAATCTAAAAATCGTTCAAATTACCTTTTTGTCAGTAGAAAATCGAATTTTCATTGAAAAAACCG ATTTCAGAGCGAAAAACCATAAAATTCCCTACAAAAAACGGGCTTTTGCAAGCTAAAAATTCGAT TTTTAGCCGATTTTCTAGTGAAAATCACTCTATTTTCATGTTTTTCACTGAGATTTTGAGCATTT TCACTTTTAATTCGATTAGTTTCCACACATTTTGGCAACAAAAAAGAAAAAAGCCAGCGTTATTT GTTTATTTTCGAACATTTTTCGCCTCGTTTTTACTTTTTTTTTCG Right flanking sequence: Indices 11239829 -- 11240328 TCCTCGTGTCGCGAAGCAATTGTTTTTGTTTTTTTCGGTCTCTTTCAGTTGACTTTTCCTTCTCC TCTGCCACCAGCCAACAACAACAAATATGCCAAAGAGAACTGGATTTCGATGTGTTATTTTCATC GTTTTTTCGCTGAAATTCGCCGTTTTGAGCTCGAAAAATGAATTTTTGGAGAAAAAAAGCTTTAA AAAATTAGCAAAAAATTGAAAACCTTGAAAAATTGCCAAAAACAGAGGTTTTTGACTCAATTTTT CGAGTTAAAATGATTAAAACTTGCCAAAAAATCAGATTTTAACTTGAAATTAGGAAAAACTTATA TTTTAAAGTCAAAACTTGACTTTAAAATATCAATTCTAAATAATTTTAAGCTAAAATCTAGTTGA AACGCAAGTTTTAAATGTTTAAATTCAAAAATTGATTCGAAAAACTCAATTTTTGACTATTTTCC AAGGTTGTCAAATTTTTTTGCTAATTTTTTAGCGAAAAAAAGTGG Found at i:11240045 original size:9 final size:9 Alignment explanation
Indices: 11240022--11240055 Score: 36 Period size: 9 Copynumber: 3.6 Consensus size: 9 11240012 AAAAAGCTTT 11240022 AAAAAATTAG 1 AAAAAATT-G 11240032 CAAAAAATTG 1 -AAAAAATTG ** 11240042 AAAACCTTG 1 AAAAAATTG 11240051 AAAAA 1 AAAAA 11240056 TTGCCAAAAA Statistics Matches: 20, Mismatches: 3, Indels: 2 0.80 0.12 0.08 Matches are distributed among these distances: 9 11 0.55 10 1 0.05 11 8 0.40 ACGTcount: A:0.65, C:0.09, G:0.09, T:0.18 Consensus pattern (9 bp): AAAAAATTG Left flanking sequence: Indices 11239522 -- 11240021 TTCAAATTACCTTTTTGTCAGTAGAAAATCGAATTTTCATTGAAAAAACCGATTTCAGAGCGAAA AACCATAAAATTCCCTACAAAAAACGGGCTTTTGCAAGCTAAAAATTCGATTTTTAGCCGATTTT CTAGTGAAAATCACTCTATTTTCATGTTTTTCACTGAGATTTTGAGCATTTTCACTTTTAATTCG ATTAGTTTCCACACATTTTGGCAACAAAAAAGAAAAAAGCCAGCGTTATTTGTTTATTTTCGAAC ATTTTTCGCCTCGTTTTTACTTTTTTTTTCGTTCTGTTTTCTGTTTTTCCTCGTGTCGCGAAGCA ATTGTTTTTGTTTTTTTCGGTCTCTTTCAGTTGACTTTTCCTTCTCCTCTGCCACCAGCCAACAA CAACAAATATGCCAAAGAGAACTGGATTTCGATGTGTTATTTTCATCGTTTTTTCGCTGAAATTC GCCGTTTTGAGCTCGAAAAATGAATTTTTGGAGAAAAAAAGCTTT Right flanking sequence: Indices 11240056 -- 11240555 TTGCCAAAAACAGAGGTTTTTGACTCAATTTTTCGAGTTAAAATGATTAAAACTTGCCAAAAAAT CAGATTTTAACTTGAAATTAGGAAAAACTTATATTTTAAAGTCAAAACTTGACTTTAAAATATCA ATTCTAAATAATTTTAAGCTAAAATCTAGTTGAAACGCAAGTTTTAAATGTTTAAATTCAAAAAT TGATTCGAAAAACTCAATTTTTGACTATTTTCCAAGGTTGTCAAATTTTTTTGCTAATTTTTTAG CGAAAAAAAGTGGAAGATTACTTTTTTTGTCTACATTAACAAAAATATCTGCAAAAATTTGATTA AATACTAAAAAATTGCAATTCCCTAGTTTCTAACTGTTTAAATTCAAAAATTGCTTTTAAAAAAA CTCAATTTTTGGCTATTTTTCAATGTTTTCACATTTTTTTGCTATTTTTTAGCAAGAAAAGTGGA AAATTACTTCTTTTTTTAATCTACATTAACAAAAATATTTTTGAA Found at i:11240483 original size:9 final size:8 Alignment explanation
Indices: 11240447--11240483 Score: 31 Period size: 9 Copynumber: 4.1 Consensus size: 8 11240437 TTAAAAAAAC 11240447 TCAATTTT 1 TCAATTTT * 11240455 TGGCTATTTT 1 T--CAATTTT 11240465 TCAATGTTT 1 TCAAT-TTT 11240474 TCACATTTT 1 TCA-ATTTT 11240483 T 1 T 11240484 TTGCTATTTT Statistics Matches: 23, Mismatches: 2, Indels: 7 0.72 0.06 0.22 Matches are distributed among these distances: 8 4 0.17 9 10 0.43 10 9 0.39 ACGTcount: A:0.19, C:0.14, G:0.08, T:0.59 Consensus pattern (8 bp): TCAATTTT Left flanking sequence: Indices 11239947 -- 11240446 GTTATTTTCATCGTTTTTTCGCTGAAATTCGCCGTTTTGAGCTCGAAAAATGAATTTTTGGAGAA AAAAAGCTTTAAAAAATTAGCAAAAAATTGAAAACCTTGAAAAATTGCCAAAAACAGAGGTTTTT GACTCAATTTTTCGAGTTAAAATGATTAAAACTTGCCAAAAAATCAGATTTTAACTTGAAATTAG GAAAAACTTATATTTTAAAGTCAAAACTTGACTTTAAAATATCAATTCTAAATAATTTTAAGCTA AAATCTAGTTGAAACGCAAGTTTTAAATGTTTAAATTCAAAAATTGATTCGAAAAACTCAATTTT TGACTATTTTCCAAGGTTGTCAAATTTTTTTGCTAATTTTTTAGCGAAAAAAAGTGGAAGATTAC TTTTTTTGTCTACATTAACAAAAATATCTGCAAAAATTTGATTAAATACTAAAAAATTGCAATTC CCTAGTTTCTAACTGTTTAAATTCAAAAATTGCTTTTAAAAAAAC Right flanking sequence: Indices 11240484 -- 11240983 TTGCTATTTTTTAGCAAGAAAAGTGGAAAATTACTTCTTTTTTTAATCTACATTAACAAAAATAT TTTTGAAAATTAGATTAAACACTAAAAAATGTCCAGAAATTAGTAAAATTCGAGATAATTTGTAG TATTGTAGTTATTTTCAATGTTCACTGATAAAACGTCAAAACAATAATAAAAGCGACGAATTTTT GAATTTCAATATCAAAATTTCAAAAAAAAAAAACAAAAACACACTTTTTTTTTTGGAAAATTTTG GATTAAATCGATTTTTATCGATTTTGGATCATTGCAACCTGCCCTCCACTGATTAGATTCTAATT ATCAGTGACACAAATGTCCTTCTCATGTACTATACTCCAGCAGTCTGCGTCTCTCTCCCTCCGAT TGACTGGTTTTTTTCTTGAAGTGACACTAACTAACGAACCGAATTTACACTACTTTTCTTCTCCA TCGAAACTATTTTACAACGTTTCTCACTTTTCGAAATAAGTAAGA Found at