TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11688541 original size:8 final size:8 Alignment explanation
Indices: 11688520--11688549 Score: 39 Period size: 8 Copynumber: 3.9 Consensus size: 8 11688510 TTGAAAATTT * 11688520 CCGGCGAA 1 CCGGCAAA 11688528 -CGGCAAA 1 CCGGCAAA 11688535 CCGGCAAA 1 CCGGCAAA * 11688543 TCGGCAA 1 CCGGCAA 11688550 GTTGCCGGGA Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 7 6 0.32 8 13 0.68 ACGTcount: A:0.33, C:0.33, G:0.30, T:0.03 Consensus pattern (8 bp): CCGGCAAA Left flanking sequence: Indices 11688020 -- 11688519 CCTCCGCCAACAGCGCCACCTACCTCTGCAGCAACACCCAATCGGATTCTGCCATCCAGCAATGC GGCGTCACCATACGGATCTCCACTCGGTTCATCAATTCTGTCCAATCAGCCACTCGTCTTGCCAT TCGCGCCGATCAACGGGGATTTTGATTTTAGCGCGGCGATCGCTGCCGCTTCACAGCCCAAAGGT CAGTTGGGATGGGGATTTTCGGGGGGTTGTTTTTTTTCGAAAAAATTTGGTTCTAAAAAATTTAT ATTTACCTACTTTCTACAAACTCGTGTGAAGCTTTTGATTAGTGCGAAAATTATCGAAAAAAATT TTTATTAAAAATTTTAAAATGTAACCGAATATAATTTCTAAAAAAAAGGATTATAGAACATATCC AACATTTAAAATTATTATTTTTTCGACTTGCCTAAAAAAATAAAATTATTGGATTTTCTTAATCT ACTCTCTGTAATCTGGCTCGAAACACTCTTCCGCATTGAAAATTT Right flanking sequence: Indices 11688550 -- 11689049 GTTGCCGGGAATGAAATTTCTGGCAAATTACCGGAATTGAAGTTTCTGGCAAATCGGCAAATTGT CGGAGTTGAAAATTTCCAGACATCCGCCAAATTTCCGGAATTAACAATTTCCGGCAAATCGGCAA ATTGCCGGAATTAACAATTTCCGGCAAATCGTCAAATTGGCGGAATTGAAAATTTCCGGCAAAAT AGCGGAATTGAAATTTCTGGCAAATCGGCAAATTGCCGGAATTGAAATTTCCGGCAAATCGGCAA TTTGCCGGCAAACCGGTAAATTGGCGGAATTAAAAATTCTGGCACATTGCCGATTTGGCGATTTT TTGGTAATTGACGTTTTGCCGACAATTTCTTGTTTTGCTCATGTTTTTTAAAAATCAAATTTCAA AAAGGCACAGTTTTTAACCGTATTCAAAAAACCCTCTTTAAAAACGTTCGGCAAATTTATATCCG GCAAACTGCAATTTGGCAATTTGCCGGAATAAAATTTGCCAAACT Found at i:11688679 original size:8 final size:8 Alignment explanation
Indices: 11688666--11688681 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11688656 TAACAATTTC 11688666 CGGCAAAT 1 CGGCAAAT 11688674 CGGCAAAT 1 CGGCAAAT 11688682 TGCCGGAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): CGGCAAAT Left flanking sequence: Indices 11688166 -- 11688665 GGATTTTGATTTTAGCGCGGCGATCGCTGCCGCTTCACAGCCCAAAGGTCAGTTGGGATGGGGAT TTTCGGGGGGTTGTTTTTTTTCGAAAAAATTTGGTTCTAAAAAATTTATATTTACCTACTTTCTA CAAACTCGTGTGAAGCTTTTGATTAGTGCGAAAATTATCGAAAAAAATTTTTATTAAAAATTTTA AAATGTAACCGAATATAATTTCTAAAAAAAAGGATTATAGAACATATCCAACATTTAAAATTATT ATTTTTTCGACTTGCCTAAAAAAATAAAATTATTGGATTTTCTTAATCTACTCTCTGTAATCTGG CTCGAAACACTCTTCCGCATTGAAAATTTCCGGCGAACGGCAAACCGGCAAATCGGCAAGTTGCC GGGAATGAAATTTCTGGCAAATTACCGGAATTGAAGTTTCTGGCAAATCGGCAAATTGTCGGAGT TGAAAATTTCCAGACATCCGCCAAATTTCCGGAATTAACAATTTC Right flanking sequence: Indices 11688682 -- 11689181 TGCCGGAATTAACAATTTCCGGCAAATCGTCAAATTGGCGGAATTGAAAATTTCCGGCAAAATAG CGGAATTGAAATTTCTGGCAAATCGGCAAATTGCCGGAATTGAAATTTCCGGCAAATCGGCAATT TGCCGGCAAACCGGTAAATTGGCGGAATTAAAAATTCTGGCACATTGCCGATTTGGCGATTTTTT GGTAATTGACGTTTTGCCGACAATTTCTTGTTTTGCTCATGTTTTTTAAAAATCAAATTTCAAAA AGGCACAGTTTTTAACCGTATTCAAAAAACCCTCTTTAAAAACGTTCGGCAAATTTATATCCGGC AAACTGCAATTTGGCAATTTGCCGGAATAAAATTTGCCAAACTGCAATTGTCGCCCTGTGCACTT CTAAAAGAGTACTACAAGGTGAATGATCAAGTGTTCATTCCAACGTAGTTGTGATAAGTATTTCA TCCCTATCACCTTCCTTATCTGCGTGCCTTCGCATCACTTTTCTA Found at i:11688825 original size:8 final size:8 Alignment explanation
Indices: 11688814--11688829 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 11688804 CGGCAATTTG 11688814 CCGGCAAA 1 CCGGCAAA * 11688822 CCGGTAAA 1 CCGGCAAA 11688830 TTGGCGGAAT Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06 Consensus pattern (8 bp): CCGGCAAA Left flanking sequence: Indices 11688314 -- 11688813 TTGATTAGTGCGAAAATTATCGAAAAAAATTTTTATTAAAAATTTTAAAATGTAACCGAATATAA TTTCTAAAAAAAAGGATTATAGAACATATCCAACATTTAAAATTATTATTTTTTCGACTTGCCTA AAAAAATAAAATTATTGGATTTTCTTAATCTACTCTCTGTAATCTGGCTCGAAACACTCTTCCGC ATTGAAAATTTCCGGCGAACGGCAAACCGGCAAATCGGCAAGTTGCCGGGAATGAAATTTCTGGC AAATTACCGGAATTGAAGTTTCTGGCAAATCGGCAAATTGTCGGAGTTGAAAATTTCCAGACATC CGCCAAATTTCCGGAATTAACAATTTCCGGCAAATCGGCAAATTGCCGGAATTAACAATTTCCGG CAAATCGTCAAATTGGCGGAATTGAAAATTTCCGGCAAAATAGCGGAATTGAAATTTCTGGCAAA TCGGCAAATTGCCGGAATTGAAATTTCCGGCAAATCGGCAATTTG Right flanking sequence: Indices 11688830 -- 11689329 TTGGCGGAATTAAAAATTCTGGCACATTGCCGATTTGGCGATTTTTTGGTAATTGACGTTTTGCC GACAATTTCTTGTTTTGCTCATGTTTTTTAAAAATCAAATTTCAAAAAGGCACAGTTTTTAACCG TATTCAAAAAACCCTCTTTAAAAACGTTCGGCAAATTTATATCCGGCAAACTGCAATTTGGCAAT TTGCCGGAATAAAATTTGCCAAACTGCAATTGTCGCCCTGTGCACTTCTAAAAGAGTACTACAAG GTGAATGATCAAGTGTTCATTCCAACGTAGTTGTGATAAGTATTTCATCCCTATCACCTTCCTTA TCTGCGTGCCTTCGCATCACTTTTCTAATGTTTTCCGCCTAGAAATTGGAAACTTTTGATGCCCC TAGTTTTTTTTTTTTGAAACTTTCGTCATTTCGTTCTTTCATTTTTTCACCGGGGAGTTGAAAAG AAGAGTCGAACGAGAGGACGCAGAGAAGCGGAGAGTTATTTAGAT Found at i:11688873 original size:8 final size:8 Alignment explanation
Indices: 11688856--11688873 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11688846 TTCTGGCACA 11688856 TTGCCGAT 1 TTGCCGAT * 11688864 TTGGCGAT 1 TTGCCGAT 11688872 TT 1 TT 11688874 TTTGGTAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.11, C:0.17, G:0.28, T:0.44 Consensus pattern (8 bp): TTGCCGAT Left flanking sequence: Indices 11688356 -- 11688855 TTTTAAAATGTAACCGAATATAATTTCTAAAAAAAAGGATTATAGAACATATCCAACATTTAAAA TTATTATTTTTTCGACTTGCCTAAAAAAATAAAATTATTGGATTTTCTTAATCTACTCTCTGTAA TCTGGCTCGAAACACTCTTCCGCATTGAAAATTTCCGGCGAACGGCAAACCGGCAAATCGGCAAG TTGCCGGGAATGAAATTTCTGGCAAATTACCGGAATTGAAGTTTCTGGCAAATCGGCAAATTGTC GGAGTTGAAAATTTCCAGACATCCGCCAAATTTCCGGAATTAACAATTTCCGGCAAATCGGCAAA TTGCCGGAATTAACAATTTCCGGCAAATCGTCAAATTGGCGGAATTGAAAATTTCCGGCAAAATA GCGGAATTGAAATTTCTGGCAAATCGGCAAATTGCCGGAATTGAAATTTCCGGCAAATCGGCAAT TTGCCGGCAAACCGGTAAATTGGCGGAATTAAAAATTCTGGCACA Right flanking sequence: Indices 11688874 -- 11689373 TTTGGTAATTGACGTTTTGCCGACAATTTCTTGTTTTGCTCATGTTTTTTAAAAATCAAATTTCA AAAAGGCACAGTTTTTAACCGTATTCAAAAAACCCTCTTTAAAAACGTTCGGCAAATTTATATCC GGCAAACTGCAATTTGGCAATTTGCCGGAATAAAATTTGCCAAACTGCAATTGTCGCCCTGTGCA CTTCTAAAAGAGTACTACAAGGTGAATGATCAAGTGTTCATTCCAACGTAGTTGTGATAAGTATT TCATCCCTATCACCTTCCTTATCTGCGTGCCTTCGCATCACTTTTCTAATGTTTTCCGCCTAGAA ATTGGAAACTTTTGATGCCCCTAGTTTTTTTTTTTTGAAACTTTCGTCATTTCGTTCTTTCATTT TTTCACCGGGGAGTTGAAAAGAAGAGTCGAACGAGAGGACGCAGAGAAGCGGAGAGTTATTTAGA TCTTTTCTGTGCCCCGGGAGATAGAGAGAGAGATAGTTGTGTGTT Found at i:11689025 original size:8 final size:8 Alignment explanation
Indices: 11689012--11689027 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11689002 CCGGCAAACT 11689012 GCAATTTG 1 GCAATTTG 11689020 GCAATTTG 1 GCAATTTG 11689028 CCGGAATAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38 Consensus pattern (8 bp): GCAATTTG Left flanking sequence: Indices 11688512 -- 11689011 GAAAATTTCCGGCGAACGGCAAACCGGCAAATCGGCAAGTTGCCGGGAATGAAATTTCTGGCAAA TTACCGGAATTGAAGTTTCTGGCAAATCGGCAAATTGTCGGAGTTGAAAATTTCCAGACATCCGC CAAATTTCCGGAATTAACAATTTCCGGCAAATCGGCAAATTGCCGGAATTAACAATTTCCGGCAA ATCGTCAAATTGGCGGAATTGAAAATTTCCGGCAAAATAGCGGAATTGAAATTTCTGGCAAATCG GCAAATTGCCGGAATTGAAATTTCCGGCAAATCGGCAATTTGCCGGCAAACCGGTAAATTGGCGG AATTAAAAATTCTGGCACATTGCCGATTTGGCGATTTTTTGGTAATTGACGTTTTGCCGACAATT TCTTGTTTTGCTCATGTTTTTTAAAAATCAAATTTCAAAAAGGCACAGTTTTTAACCGTATTCAA AAAACCCTCTTTAAAAACGTTCGGCAAATTTATATCCGGCAAACT Right flanking sequence: Indices 11689028 -- 11689527 CCGGAATAAAATTTGCCAAACTGCAATTGTCGCCCTGTGCACTTCTAAAAGAGTACTACAAGGTG AATGATCAAGTGTTCATTCCAACGTAGTTGTGATAAGTATTTCATCCCTATCACCTTCCTTATCT GCGTGCCTTCGCATCACTTTTCTAATGTTTTCCGCCTAGAAATTGGAAACTTTTGATGCCCCTAG TTTTTTTTTTTTGAAACTTTCGTCATTTCGTTCTTTCATTTTTTCACCGGGGAGTTGAAAAGAAG AGTCGAACGAGAGGACGCAGAGAAGCGGAGAGTTATTTAGATCTTTTCTGTGCCCCGGGAGATAG AGAGAGAGATAGTTGTGTGTTATCAATGATGATTGTTGTCTCTGCGTATCCTATCGCACAGTTTC TTCGTCTTCTTCCCGCTTGTTTCTCTGGTAACTCTATTCGACAGGAATTGACGTCACTTTTTTTC TCAAGCGTTTCTCTCTACTAGGAGTCTCTAATCACACACACACAC Found at i:11689259 original size:8 final size:8 Alignment explanation
Indices: 11689239--11689267 Score: 30 Period size: 8 Copynumber: 3.6 Consensus size: 8 11689229 TTTTTTGAAA * 11689239 CTTTCGTC 1 CTTTCGTT * 11689247 ATTTCGTT 1 CTTTCGTT * 11689255 CTTTCATT 1 CTTTCGTT * 11689263 TTTTC 1 CTTTC 11689268 ACCGGGGAGT Statistics Matches: 16, Mismatches: 5, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 8 16 1.00 ACGTcount: A:0.07, C:0.24, G:0.07, T:0.62 Consensus pattern (8 bp): CTTTCGTT Left flanking sequence: Indices 11688739 -- 11689238 CAAAATAGCGGAATTGAAATTTCTGGCAAATCGGCAAATTGCCGGAATTGAAATTTCCGGCAAAT CGGCAATTTGCCGGCAAACCGGTAAATTGGCGGAATTAAAAATTCTGGCACATTGCCGATTTGGC GATTTTTTGGTAATTGACGTTTTGCCGACAATTTCTTGTTTTGCTCATGTTTTTTAAAAATCAAA TTTCAAAAAGGCACAGTTTTTAACCGTATTCAAAAAACCCTCTTTAAAAACGTTCGGCAAATTTA TATCCGGCAAACTGCAATTTGGCAATTTGCCGGAATAAAATTTGCCAAACTGCAATTGTCGCCCT GTGCACTTCTAAAAGAGTACTACAAGGTGAATGATCAAGTGTTCATTCCAACGTAGTTGTGATAA GTATTTCATCCCTATCACCTTCCTTATCTGCGTGCCTTCGCATCACTTTTCTAATGTTTTCCGCC TAGAAATTGGAAACTTTTGATGCCCCTAGTTTTTTTTTTTTGAAA Right flanking sequence: Indices 11689268 -- 11689767 ACCGGGGAGTTGAAAAGAAGAGTCGAACGAGAGGACGCAGAGAAGCGGAGAGTTATTTAGATCTT TTCTGTGCCCCGGGAGATAGAGAGAGAGATAGTTGTGTGTTATCAATGATGATTGTTGTCTCTGC GTATCCTATCGCACAGTTTCTTCGTCTTCTTCCCGCTTGTTTCTCTGGTAACTCTATTCGACAGG AATTGACGTCACTTTTTTTCTCAAGCGTTTCTCTCTACTAGGAGTCTCTAATCACACACACACAC AGTGAGACCCCCGATAGTTTTTCCAATCTTCAACGTCTCCGATCTTCATCATCAGTTGACCGTAT TATTATTATTATCGATAGGATCACATATTATTTTAATTTTTTTTTTTGGTCTACAGTTTCAATGG AGTCACTGGTTTTCAATGGACATTCTCATATGAATGGTATGAACTGGTAGGATGGATTTGAGCAG CAATACAATTAAGTTACTCGGAAAATTGAAGACTTTAGGGTTTTT Found at i:11689700 original size:9 final size:10 Alignment explanation
Indices: 11689686--11689706 Score: 35 Period size: 9 Copynumber: 2.2 Consensus size: 10 11689676 GACATTCTCA 11689686 TATGAA-TGG 1 TATGAACTGG 11689695 TATGAACTGG 1 TATGAACTGG 11689705 TA 1 TA 11689707 GGATGGATTT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 6 0.55 10 5 0.45 ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33 Consensus pattern (10 bp): TATGAACTGG Left flanking sequence: Indices 11689186 -- 11689685 TTTCCGCCTAGAAATTGGAAACTTTTGATGCCCCTAGTTTTTTTTTTTTGAAACTTTCGTCATTT CGTTCTTTCATTTTTTCACCGGGGAGTTGAAAAGAAGAGTCGAACGAGAGGACGCAGAGAAGCGG AGAGTTATTTAGATCTTTTCTGTGCCCCGGGAGATAGAGAGAGAGATAGTTGTGTGTTATCAATG ATGATTGTTGTCTCTGCGTATCCTATCGCACAGTTTCTTCGTCTTCTTCCCGCTTGTTTCTCTGG TAACTCTATTCGACAGGAATTGACGTCACTTTTTTTCTCAAGCGTTTCTCTCTACTAGGAGTCTC TAATCACACACACACACAGTGAGACCCCCGATAGTTTTTCCAATCTTCAACGTCTCCGATCTTCA TCATCAGTTGACCGTATTATTATTATTATCGATAGGATCACATATTATTTTAATTTTTTTTTTTG GTCTACAGTTTCAATGGAGTCACTGGTTTTCAATGGACATTCTCA Right flanking sequence: Indices 11689707 -- 11690206 GGATGGATTTGAGCAGCAATACAATTAAGTTACTCGGAAAATTGAAGACTTTAGGGTTTTTCGCC TAGAAAAAATTATGAAGTAGCTCTGGAAATGTTAAATAAAATATTTAGAGAAGTAATGAAGTTAC ATCTAAAATGCGAACCCCTTTTCTTACAATTAGAAGTGGCACTAACTAAATAGCGAATAGTTTAT TGAACAGATTATTTTAATACAAACTTGCATCGTAATTTAGTATAGATTTGACGGAGTGGGTCTCG CCACGATATCTTGACGACATTCGGCATTGTGTTTTATTTTAGATATTACACAACTGTTGATTTTT TTATTAAAAAAAACTATTTTATGAAATTTGATATTATTAAAGGTGGAGTAGCGCCAGTAGGGAAA TTGTTAAAAACCACTCCTTTGGTCGCAAAATGACCAAATATCATGATAAAACTTTTCAAAAAATT TTTGAATATTTTTTATTCACTATCAAAAAATTCCCTCCAATTTCC Found at i:11691558 original size:9 final size:9 Alignment explanation
Indices: 11691544--11691561 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11691534 GAACAGAATT 11691544 TTTTTTAAA 1 TTTTTTAAA 11691553 TTTTTTAAA 1 TTTTTTAAA 11691562 CTGTGTTTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (9 bp): TTTTTTAAA Left flanking sequence: Indices 11691044 -- 11691543 ATCCAGACATTTAGATATACGTCCTTAAACAAAATTACACCTAGTTTTATTAAATATTTTGAACA ACTCGAAAATTGTCTAATTTTCAACGAAATATTGTAGCAAAAAACCTAACTTTTCTTTAGTATTT CCAGGAGGACCACAACAAAACGGACTCGGCGGCGGCGGCGGAGGTGGAGGAGTACCGGGACCTTC TAGTGGAATTGCCGGAATGTCTGTACAACCACCAACTAGCAGTACACCATCCCAACAACAATCCG TACAATCACTTGAAGGCACATCTGGGCTCATTGGAAGTGCAATGAAGCCAATGTTGGGAATTGAT GCTGTCAGCTTTCCAGGTTTGTGGGATTTTTGTACGAAAAATTCTGAAAAATCGATCAATTTGCG TCATATAATGTGGAATTTCGAAAAAAAAAATTCAAAATTGAATTTTTTCAAAATCGAGTAATGCC TAATATAGGCTTAAATAATTAATTCATGATTAATAGAACAGAATT Right flanking sequence: Indices 11691562 -- 11692061 CTGTGTTTCACAGAGTAATCACGCTAATGAATAATTAAACGAAAAATTAAAGAAATTTTAAAGTT CTGTTTTTAATTGAATAATTAAGCATAAGCTTATATGTTTTTAGGCATATAAATTTTTTTTTTAA TTTTCAAAAAAATTTAACGAAAATCCATAATCCAATCAGTATATAAAAAATTTTGTAATAAAAAA TTGCATTTTAAAAGTTGTTCTGTATAAAGTATAATGTACAAGCAAACAAAAACTTTTTCAATCAA AAAAAAATTGAATAGTTGAGCATAAGCTTATACGAGTAAGACATCAAAAAATATCATATTTTAAG AAAAAAATATTTGAAAATGTTGTATCGATAGTTATTTTAATTAATCCATTTATTTAAATAGTCAT ATTTTTCTTCCATTTTTTGGCAATATAGTGACAATATGAAAATATTTTTGTGGTAAAAAATTTAT TTTAAAAATTGTTCTTTATAGAGTATAATATACAAGCTAATGAAT Found at i:11691790 original size:7 final size:7 Alignment explanation
Indices: 11691778--11691794 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11691768 AAGTTGTTCT 11691778 GTATAAA 1 GTATAAA * 11691785 GTATAAT 1 GTATAAA 11691792 GTA 1 GTA 11691795 CAAGCAAACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35 Consensus pattern (7 bp): GTATAAA Left flanking sequence: Indices 11691278 -- 11691777 CAGTACACCATCCCAACAACAATCCGTACAATCACTTGAAGGCACATCTGGGCTCATTGGAAGTG CAATGAAGCCAATGTTGGGAATTGATGCTGTCAGCTTTCCAGGTTTGTGGGATTTTTGTACGAAA AATTCTGAAAAATCGATCAATTTGCGTCATATAATGTGGAATTTCGAAAAAAAAAATTCAAAATT GAATTTTTTCAAAATCGAGTAATGCCTAATATAGGCTTAAATAATTAATTCATGATTAATAGAAC AGAATTTTTTTTAAATTTTTTAAACTGTGTTTCACAGAGTAATCACGCTAATGAATAATTAAACG AAAAATTAAAGAAATTTTAAAGTTCTGTTTTTAATTGAATAATTAAGCATAAGCTTATATGTTTT TAGGCATATAAATTTTTTTTTTAATTTTCAAAAAAATTTAACGAAAATCCATAATCCAATCAGTA TATAAAAAATTTTGTAATAAAAAATTGCATTTTAAAAGTTGTTCT Right flanking sequence: Indices 11691795 -- 11692294 CAAGCAAACAAAAACTTTTTCAATCAAAAAAAAATTGAATAGTTGAGCATAAGCTTATACGAGTA AGACATCAAAAAATATCATATTTTAAGAAAAAAATATTTGAAAATGTTGTATCGATAGTTATTTT AATTAATCCATTTATTTAAATAGTCATATTTTTCTTCCATTTTTTGGCAATATAGTGACAATATG AAAATATTTTTGTGGTAAAAAATTTATTTTAAAAATTGTTCTTTATAGAGTATAATATACAAGCT AATGAATGATTAAAGAATACAAAAATGAAGACTAAAAAATTTTCAGTTAGAAAAAAATTTAACTT AAAAAATATATATGATCATTCAAATAAAGCTATTACATTTTATTATATTAAAAATTTATTTTCCA AAAAAATAATTTTTTTGGCAATATTGTGAAAACATTCCAGTTATCGAACAGTTCGAAACCATTGT TTTTCCAAATCAGCGGAATTCTAAAAAAATATATTTTTTGACCGC Found at i:11692731 original size:8 final size:8 Alignment explanation
Indices: 11692718--11692733 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11692708 AATTTTTGGC 11692718 TGAAAAAA 1 TGAAAAAA 11692726 TGAAAAAA 1 TGAAAAAA 11692734 ATTAGACTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12 Consensus pattern (8 bp): TGAAAAAA Left flanking sequence: Indices 11692218 -- 11692717 ATTCCAGTTATCGAACAGTTCGAAACCATTGTTTTTCCAAATCAGCGGAATTCTAAAAAAATATA TTTTTTGACCGCATTTTTTTTGGCAAAAAAATTCCAAATATTCCCATTTTTCATCCTATTCGATT ATTCTACAGAATTCGGCACAACGGACTGGCAGTCACCGATGCTCTCCGGCGGCTACAGCTCGAGC CCATCGCCAACAATGACGGGCGGCTCAATGCGAATGGGCGGTGGACCGCTGCACGGTGAAGATGA ATCGAATCGAAAGCGACAAGTACGATTGCTAAAGAATCGAGAGGCAGCGAAAGAGTGCCGCAGAA AAAAGAAGGTAATTTTTTGGAGCGGAAATTTGGAGGGAAAAAAATTATTTTTTGGCTGAAAAATT GAGAAAAATTAGACTTTTTTAAGATCGAAAATCAGATTTTTTTTTGGTTAAAATTTTCAGAAAAT CACGATTTTTGGACTGAAAATTTGGAAGAAAAAGGAATTTTTGGC Right flanking sequence: Indices 11692734 -- 11693233 ATTAGACTTTTTTTAGACTTAAAAATCATTATTTTTTTACTGAAAATGTGCAAAAAAAGTATATT TTTCGGCTAAAAATTTGGGGAAAAAATGAGATATTCTGACTGACATTACAAGAAAAAGTGCATTT TTTAGCTGAAAATTTCAGGAAAAAAAATGCGATTTTTTTAAAATTGAAAATCAGGTTTTTTGGTT AAATTTTCAGAAAATCAAGATTTTTGAACTGAAAATTTGAAAAAAAAAATTCTAGTTGAAAACTT CAGAAAAAGTTGTTTTTCGGCTCAAAAATCGAGGAAAAAAATAAAATTTTTTTGGCTTGAAAATC GGAAAAAAATCAATTTTTTTTTTGCCTAAAAATCGGAAAAAAAAACCAGTTTTAATTTAAATTGG AATTTTATTCAAATTTTCTGAAAAAATTAATTTTTTACCGTTTTTTACAAAAAAAAAATCCACCG ATTTTCTAATTTTTTTTCTTAAATTTCGAGAAAAAAAATTCGTGA Found at i:11694192 original size:8 final size:8 Alignment explanation
Indices: 11694175--11694192 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11694165 TTTTTACGGT 11694175 AAACTCAA 1 AAACTCAA * 11694183 AAATTCAA 1 AAACTCAA 11694191 AA 1 AA 11694193 TTGGGGCTTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17 Consensus pattern (8 bp): AAACTCAA Left flanking sequence: Indices 11693675 -- 11694174 TAGTTAACTACTTTCATTCAATTAATTGTGATATCGATCGGTTTTTTTTGTCTGTTTTCCCCCCT CACTATCATTTTATCGATTTTTTCCTCTCCTCAAGTGTTTTGCCACGTGTAGACGGAATTTTTGG CGCGTTTTTGTGTAGATATCCATTAAGTGGGCGGGGTTTGTCCAAGTTTTTTTTTTCTTTTTGAA AAATCAGAGTTCTTAGGTGTAACTGCAAAGTTGTTTTTTTTTTTTTTTGAAATCCCATTTTTCCT AAAAACGTCCAAGATAGGGGCGGGGCCCAATTAGGTACCGCCCCCTTTTTGAACTTTTCGAATTG ATTTCCCGAAATCTCGTTTTTCGCTTTTAAATTTCTAGAAAAAAATCTAATTTTTCCGAAAAAAA ACCACCCAATTTTTTTTTTTTTTTGAAAACTGAGTTTCAGAAATACAGGCCACGCCCACAAAATG GACGAAGTTTATTCACCACTTTTTCAAAAATAATTTTTTTACGGT Right flanking sequence: Indices 11694193 -- 11694692 TTGGGGCTTCAAAAATTTCTGAAAAATTCAAATTTTTGAAAAAAAAAACAATTCACAGAAAGGGC GGCGTTAACAAGCCACACTTATAAAATGGGCGGCGCTTAGCAAGCCACGCCCACAAAATGCACAA ACATTGTTTTGTTTTTTCTTAAAAATGGTATTCCTAGTAAATGCACAAACCAAATTTCGTGTAGA AAAATTACCCAATTTTTAAAAATAAATTTTAAAAAGGGCGGAGCTTAACAAGCCACGCCCATAAA TTGGGCGAAGCTTATTTGTCAATTTTTCGAAAGAAAAATTCCGGTAAATGCGAAAATTCAAATTC CGAGCTTCAAAAATCTCAAATATTTCCAATTTTCGAAAAAAAAAAGAAAATGCAAAACATGGGCG GAGCTTAACAAGCTTTAAGTCACCACGCCCACAAAATGGTCATTTTTGCGCATTTTCCCGACTAC ACGTGGCAAACCACTTCCCTCCGTTCCAATAGGAAATGCCGTTCT Found at i:11695636 original size:11 final size:10 Alignment explanation
Indices: 11695614--11695673 Score: 48 Period size: 10 Copynumber: 6.1 Consensus size: 10 11695604 GAAAACTATT * 11695614 AAAAAGTGGC 1 AAAATGTGGC * 11695624 AAATATTTGGC 1 AAA-ATGTGGC 11695635 AAAATGTGGC 1 AAAATGTGGC * * 11695645 AGAAAGTGGC 1 AAAATGTGGC * * 11695655 AGAA--AGGC 1 AAAATGTGGC * 11695663 AAAAAGTGGC 1 AAAATGTGGC 11695673 A 1 A 11695674 GTGACAAAAA Statistics Matches: 39, Mismatches: 8, Indels: 6 0.74 0.15 0.11 Matches are distributed among these distances: 8 6 0.15 10 25 0.64 11 8 0.21 ACGTcount: A:0.45, C:0.10, G:0.30, T:0.15 Consensus pattern (10 bp): AAAATGTGGC Left flanking sequence: Indices 11695114 -- 11695613 CAAACCATAGGAAATTGGAGTTTACTGGGAAAATTTGGAAATTGGTTTTGGTTACCTGGCTCGCA GAGCACAATTTGTTCTGTTGAAATTTTTTGGTGGAAATCATGTGCTTTTGCTTCAAGAAATTGAT ATTTTTACAAATTTTTGTGCTTATCGTGTTAATTGGATCGAGCCATGAGCAAGGTAAGGGGGCTT TTTGGGAGAATTCTTTTAAAAAAATCAATAATTTTTTTGGAATTTTTTTGTCATTATTTGTAGAA TTTTCAGCTGATAGTCGATAGGCTTTTGTTTAAAATAATAGCATTAAATTGCTAGAATTTCTTTT TTTTAATTTGTGCAATTTCAAAACAAAGTTTTTTTTGCCCGAAAAAAAGTCATTTTGCCACTTTT TGGCTGAAAAAAAATTGGGCAAAAATAAAAAATTGTCTGAATTTGTTGAAAACGGGTAATTCATA TATGGAGAATTTAGAAAATCTAGGTTTAACCCGTCGAAAACTATT Right flanking sequence: Indices 11695674 -- 11696173 GTGACAAAAAGTGGCAAAAAAAAGTGACAAAAAAGTAGCAAAAATTTATGGCAAAAATTCACAAT TTTGAAACTCCTCTAAAATGGTTAATTTTGTAGTTAAAGGACTCAAAATTGATATTCGAACTCTA AAAAATTGCCCTTTTTCAGAATATAGAGGTTTTGTACATTTCCAGAAATTTTTTTTTGCCCGAAA AAAGACAATTTGAAAAAATTGGATGGCTGAAAAAAAAACAAATTGGGCAAAAATAAAAAGTTGCC TAAGTTTGTTGAAAACGGGTAATTCATATATGGAGAATTCAGAAAAACTATGCTTAACCCATCAA AAACTATTAAAAAGTGGCAAAAATTTCAAAATTTTTTTTTTTTTTAATTAAAAAAAAAATTTTTT GTTCGACATTCGAAAACTCTCCCAATTATCAGATTACATATTTTTTTACCACCTTAAATCACCAT TTTTTTCAGGTTTTGGTGGTCCAATTGACGCAAAATCCACCAAAT Found at i:11695653 original size:10 final size:10 Alignment explanation
Indices: 11695631--11695674 Score: 53 Period size: 10 Copynumber: 4.6 Consensus size: 10 11695621 GGCAAATATT * * 11695631 TGGCAAAATG 1 TGGCAGAAAG 11695641 TGGCAGAAAG 1 TGGCAGAAAG 11695651 TGGCAGAAA- 1 TGGCAGAAAG * 11695660 -GGCAAAAAG 1 TGGCAGAAAG 11695669 TGGCAG 1 TGGCAG 11695675 TGACAAAAAG Statistics Matches: 28, Mismatches: 4, Indels: 4 0.78 0.11 0.11 Matches are distributed among these distances: 8 7 0.25 10 21 0.75 ACGTcount: A:0.41, C:0.11, G:0.36, T:0.11 Consensus pattern (10 bp): TGGCAGAAAG Left flanking sequence: Indices 11695131 -- 11695630 GAGTTTACTGGGAAAATTTGGAAATTGGTTTTGGTTACCTGGCTCGCAGAGCACAATTTGTTCTG TTGAAATTTTTTGGTGGAAATCATGTGCTTTTGCTTCAAGAAATTGATATTTTTACAAATTTTTG TGCTTATCGTGTTAATTGGATCGAGCCATGAGCAAGGTAAGGGGGCTTTTTGGGAGAATTCTTTT AAAAAAATCAATAATTTTTTTGGAATTTTTTTGTCATTATTTGTAGAATTTTCAGCTGATAGTCG ATAGGCTTTTGTTTAAAATAATAGCATTAAATTGCTAGAATTTCTTTTTTTTAATTTGTGCAATT TCAAAACAAAGTTTTTTTTGCCCGAAAAAAAGTCATTTTGCCACTTTTTGGCTGAAAAAAAATTG GGCAAAAATAAAAAATTGTCTGAATTTGTTGAAAACGGGTAATTCATATATGGAGAATTTAGAAA ATCTAGGTTTAACCCGTCGAAAACTATTAAAAAGTGGCAAATATT Right flanking sequence: Indices 11695675 -- 11696174 TGACAAAAAGTGGCAAAAAAAAGTGACAAAAAAGTAGCAAAAATTTATGGCAAAAATTCACAATT TTGAAACTCCTCTAAAATGGTTAATTTTGTAGTTAAAGGACTCAAAATTGATATTCGAACTCTAA AAAATTGCCCTTTTTCAGAATATAGAGGTTTTGTACATTTCCAGAAATTTTTTTTTGCCCGAAAA AAGACAATTTGAAAAAATTGGATGGCTGAAAAAAAAACAAATTGGGCAAAAATAAAAAGTTGCCT AAGTTTGTTGAAAACGGGTAATTCATATATGGAGAATTCAGAAAAACTATGCTTAACCCATCAAA AACTATTAAAAAGTGGCAAAAATTTCAAAATTTTTTTTTTTTTTAATTAAAAAAAAAATTTTTTG TTCGACATTCGAAAACTCTCCCAATTATCAGATTACATATTTTTTTACCACCTTAAATCACCATT TTTTTCAGGTTTTGGTGGTCCAATTGACGCAAAATCCACCAAATC Found at i:11695668 original size:8 final size:8 Alignment explanation
Indices: 11695652--11695668 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 11695642 GGCAGAAAGT * 11695652 GGCAGAAA 1 GGCAAAAA 11695660 GGCAAAAA 1 GGCAAAAA 11695668 G 1 G 11695669 TGGCAGTGAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.53, C:0.12, G:0.35, T:0.00 Consensus pattern (8 bp): GGCAAAAA Left flanking sequence: Indices 11695152 -- 11695651 AAATTGGTTTTGGTTACCTGGCTCGCAGAGCACAATTTGTTCTGTTGAAATTTTTTGGTGGAAAT CATGTGCTTTTGCTTCAAGAAATTGATATTTTTACAAATTTTTGTGCTTATCGTGTTAATTGGAT CGAGCCATGAGCAAGGTAAGGGGGCTTTTTGGGAGAATTCTTTTAAAAAAATCAATAATTTTTTT GGAATTTTTTTGTCATTATTTGTAGAATTTTCAGCTGATAGTCGATAGGCTTTTGTTTAAAATAA TAGCATTAAATTGCTAGAATTTCTTTTTTTTAATTTGTGCAATTTCAAAACAAAGTTTTTTTTGC CCGAAAAAAAGTCATTTTGCCACTTTTTGGCTGAAAAAAAATTGGGCAAAAATAAAAAATTGTCT GAATTTGTTGAAAACGGGTAATTCATATATGGAGAATTTAGAAAATCTAGGTTTAACCCGTCGAA AACTATTAAAAAGTGGCAAATATTTGGCAAAATGTGGCAGAAAGT Right flanking sequence: Indices 11695669 -- 11696168 TGGCAGTGACAAAAAGTGGCAAAAAAAAGTGACAAAAAAGTAGCAAAAATTTATGGCAAAAATTC ACAATTTTGAAACTCCTCTAAAATGGTTAATTTTGTAGTTAAAGGACTCAAAATTGATATTCGAA CTCTAAAAAATTGCCCTTTTTCAGAATATAGAGGTTTTGTACATTTCCAGAAATTTTTTTTTGCC CGAAAAAAGACAATTTGAAAAAATTGGATGGCTGAAAAAAAAACAAATTGGGCAAAAATAAAAAG TTGCCTAAGTTTGTTGAAAACGGGTAATTCATATATGGAGAATTCAGAAAAACTATGCTTAACCC ATCAAAAACTATTAAAAAGTGGCAAAAATTTCAAAATTTTTTTTTTTTTTAATTAAAAAAAAAAT TTTTTGTTCGACATTCGAAAACTCTCCCAATTATCAGATTACATATTTTTTTACCACCTTAAATC ACCATTTTTTTCAGGTTTTGGTGGTCCAATTGACGCAAAATCCAC Found at i:11695706 original size:10 final size:10 Alignment explanation
Indices: 11695673--11695693 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 11695663 AAAAAGTGGC 11695673 AGTGACAAAA 1 AGTGACAAAA * 11695683 AGTGGCAAAA 1 AGTGACAAAA 11695693 A 1 A 11695694 AAAGTGACAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.57, C:0.10, G:0.24, T:0.10 Consensus pattern (10 bp): AGTGACAAAA Left flanking sequence: Indices 11695173 -- 11695672 CTCGCAGAGCACAATTTGTTCTGTTGAAATTTTTTGGTGGAAATCATGTGCTTTTGCTTCAAGAA ATTGATATTTTTACAAATTTTTGTGCTTATCGTGTTAATTGGATCGAGCCATGAGCAAGGTAAGG GGGCTTTTTGGGAGAATTCTTTTAAAAAAATCAATAATTTTTTTGGAATTTTTTTGTCATTATTT GTAGAATTTTCAGCTGATAGTCGATAGGCTTTTGTTTAAAATAATAGCATTAAATTGCTAGAATT TCTTTTTTTTAATTTGTGCAATTTCAAAACAAAGTTTTTTTTGCCCGAAAAAAAGTCATTTTGCC ACTTTTTGGCTGAAAAAAAATTGGGCAAAAATAAAAAATTGTCTGAATTTGTTGAAAACGGGTAA TTCATATATGGAGAATTTAGAAAATCTAGGTTTAACCCGTCGAAAACTATTAAAAAGTGGCAAAT ATTTGGCAAAATGTGGCAGAAAGTGGCAGAAAGGCAAAAAGTGGC Right flanking sequence: Indices 11695694 -- 11696193 AAAGTGACAAAAAAGTAGCAAAAATTTATGGCAAAAATTCACAATTTTGAAACTCCTCTAAAATG GTTAATTTTGTAGTTAAAGGACTCAAAATTGATATTCGAACTCTAAAAAATTGCCCTTTTTCAGA ATATAGAGGTTTTGTACATTTCCAGAAATTTTTTTTTGCCCGAAAAAAGACAATTTGAAAAAATT GGATGGCTGAAAAAAAAACAAATTGGGCAAAAATAAAAAGTTGCCTAAGTTTGTTGAAAACGGGT AATTCATATATGGAGAATTCAGAAAAACTATGCTTAACCCATCAAAAACTATTAAAAAGTGGCAA AAATTTCAAAATTTTTTTTTTTTTTAATTAAAAAAAAAATTTTTTGTTCGACATTCGAAAACTCT CCCAATTATCAGATTACATATTTTTTTACCACCTTAAATCACCATTTTTTTCAGGTTTTGGTGGT CCAATTGACGCAAAATCCACCAAATCGCAAACAACTACAGCTCAA Found at i:11696028 original size:9 final size:9 Alignment explanation
Indices: 11696016--11696033 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11696006 TAAAAAGTGG 11696016 CAAAAATTT 1 CAAAAATTT * 11696025 CAAAATTTT 1 CAAAAATTT 11696034 TTTTTTTTTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39 Consensus pattern (9 bp): CAAAAATTT Left flanking sequence: Indices 11695516 -- 11696015 AATTGGGCAAAAATAAAAAATTGTCTGAATTTGTTGAAAACGGGTAATTCATATATGGAGAATTT AGAAAATCTAGGTTTAACCCGTCGAAAACTATTAAAAAGTGGCAAATATTTGGCAAAATGTGGCA GAAAGTGGCAGAAAGGCAAAAAGTGGCAGTGACAAAAAGTGGCAAAAAAAAGTGACAAAAAAGTA GCAAAAATTTATGGCAAAAATTCACAATTTTGAAACTCCTCTAAAATGGTTAATTTTGTAGTTAA AGGACTCAAAATTGATATTCGAACTCTAAAAAATTGCCCTTTTTCAGAATATAGAGGTTTTGTAC ATTTCCAGAAATTTTTTTTTGCCCGAAAAAAGACAATTTGAAAAAATTGGATGGCTGAAAAAAAA ACAAATTGGGCAAAAATAAAAAGTTGCCTAAGTTTGTTGAAAACGGGTAATTCATATATGGAGAA TTCAGAAAAACTATGCTTAACCCATCAAAAACTATTAAAAAGTGG Right flanking sequence: Indices 11696034 -- 11696533 TTTTTTTTTTAATTAAAAAAAAAATTTTTTGTTCGACATTCGAAAACTCTCCCAATTATCAGATT ACATATTTTTTTACCACCTTAAATCACCATTTTTTTCAGGTTTTGGTGGTCCAATTGACGCAAAA TCCACCAAATCGCAAACAACTACAGCTCAAACTACAGTACCCCCACCGGAAACTACAGCTGCCTC AGAAGTTCATGCGACCACTTCTGACACAAATCGAATTTCAATACTCATTTCTCTTTTTTCTTTAT CTATAATCCAACTGTTTCCGTTTTTATAATTGAATTCTCAATGATATAAACCTAAACCAATTTCA AAGTTCCTGGGGTGGGGAATTGAATGAAAATAGGCGGAGTCTGGAGCACTTGAGCCCTGAATCTA GTTTCAGAACAAATCAGTTTTCAAATTTTTATAACTGTGTGTTGACTGAAAATGAGCTTCTATTT GATTATAGCTATGGTATCCATGGTTACCATGAGCCATGGTGCACC Found at i:11696910 original size:7 final size:7 Alignment explanation
Indices: 11696895--11696910 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11696885 AAAACATTTT * 11696895 TTTAGAA 1 TTTACAA 11696902 TTTACAA 1 TTTACAA 11696909 TT 1 TT 11696911 CCATTCCAGA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50 Consensus pattern (7 bp): TTTACAA Left flanking sequence: Indices 11696395 -- 11696894 GAGTCTGGAGCACTTGAGCCCTGAATCTAGTTTCAGAACAAATCAGTTTTCAAATTTTTATAACT GTGTGTTGACTGAAAATGAGCTTCTATTTGATTATAGCTATGGTATCCATGGTTACCATGAGCCA TGGTGCACCACAACTTCAGCTAGGCCTTGGAAATTCTATGATGCCGGAGGTTCATGCAACAGGTA GGCTTTGGAATGTATTCACGTGGTGCCAGGCTGTCCCATTACGGTTTGATCCACAAAAAATGCGG GAATTTTTTGCCCAAAAAATGTGACGTCAGTACACTCTTAACCATTCGAAATCAGTTGAGAACTC AGCGTCTCTTCTCTCGCATTTTTTGTAGATCTACGTAGATCAAGCAGAAATACGACATTCTGACA CCACGTGAGTATTGGGTAGTGCTCTAGAAGCCTAACAATCTTACAAAAAGTTTTGAAAACCCCAA AAGATTTTCCAGTTTTTAGGATTTTCTCGCAGCCGAAAACATTTT Right flanking sequence: Indices 11696911 -- 11697410 CCATTCCAGAAAACTGTCCAAAAGTTTCTCCAAAGTTTAAAGAGCTTTTAGATTTTTTGGATTTT TAGAATTTTACGATTCCATTCCAGCAATTTCTGAAAATTTTAAGTTCCCGCAAAAAGCTTATTTT CAAATATTTTCATAACATTTTCAAATTGCCGGCAAAATGTAACTTTTATTTGTGCCCCACTGACC AAAAATGTACTTAAATCAACGAATAATCGCTTAATAAAAAACGACAATATTTATTAAAGTGTGGC TAAAAATGGGCCTTATTCTCCAGAACTTTAAACCGCCATAACTTTATTTAAAATAAATTTTCAAA ACTTCTCATTACGAAATTCGGTAGTTTTAGGTCATTTTAGGTCTAAAAAAGCAAAGTCTCAAATT TCGGTACTCCACGGGGTTTAAAAAATTAACGATTTCAGGCTTAAATTTTAAAGCTTTTGTTTTCT AAAATTTTTTTGATCTCTAGAAATTGTTTGAGAAGCTTGAAATTA Found at i:11696973 original size:9 final size:9 Alignment explanation
Indices: 11696956--11696984 Score: 37 Period size: 9 Copynumber: 3.2 Consensus size: 9 11696946 TTTAAAGAGC * 11696956 TTTTAGATT 1 TTTTGGATT 11696965 TTTTGGATT 1 TTTTGGATT * * 11696974 TTTAGAATT 1 TTTTGGATT 11696983 TT 1 TT 11696985 ACGATTCCAT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66 Consensus pattern (9 bp): TTTTGGATT Left flanking sequence: Indices 11696456 -- 11696955 AACTGTGTGTTGACTGAAAATGAGCTTCTATTTGATTATAGCTATGGTATCCATGGTTACCATGA GCCATGGTGCACCACAACTTCAGCTAGGCCTTGGAAATTCTATGATGCCGGAGGTTCATGCAACA GGTAGGCTTTGGAATGTATTCACGTGGTGCCAGGCTGTCCCATTACGGTTTGATCCACAAAAAAT GCGGGAATTTTTTGCCCAAAAAATGTGACGTCAGTACACTCTTAACCATTCGAAATCAGTTGAGA ACTCAGCGTCTCTTCTCTCGCATTTTTTGTAGATCTACGTAGATCAAGCAGAAATACGACATTCT GACACCACGTGAGTATTGGGTAGTGCTCTAGAAGCCTAACAATCTTACAAAAAGTTTTGAAAACC CCAAAAGATTTTCCAGTTTTTAGGATTTTCTCGCAGCCGAAAACATTTTTTTAGAATTTACAATT CCATTCCAGAAAACTGTCCAAAAGTTTCTCCAAAGTTTAAAGAGC Right flanking sequence: Indices 11696985 -- 11697484 ACGATTCCATTCCAGCAATTTCTGAAAATTTTAAGTTCCCGCAAAAAGCTTATTTTCAAATATTT TCATAACATTTTCAAATTGCCGGCAAAATGTAACTTTTATTTGTGCCCCACTGACCAAAAATGTA CTTAAATCAACGAATAATCGCTTAATAAAAAACGACAATATTTATTAAAGTGTGGCTAAAAATGG GCCTTATTCTCCAGAACTTTAAACCGCCATAACTTTATTTAAAATAAATTTTCAAAACTTCTCAT TACGAAATTCGGTAGTTTTAGGTCATTTTAGGTCTAAAAAAGCAAAGTCTCAAATTTCGGTACTC CACGGGGTTTAAAAAATTAACGATTTCAGGCTTAAATTTTAAAGCTTTTGTTTTCTAAAATTTTT TTGATCTCTAGAAATTGTTTGAGAAGCTTGAAATTAGCGCCATAAACATTTCAGAGAAGGATCGA TGCACCATGATGTTTTCTTACAAATTTCAGGGTTTTTGCACAGAA Found at i:11696975 original size:8 final size:8 Alignment explanation
Indices: 11696956--11696990 Score: 38 Period size: 8 Copynumber: 4.1 Consensus size: 8 11696946 TTTAAAGAGC 11696956 TTTTAGATT 1 TTTTAGA-T * 11696965 TTTTGGAT 1 TTTTAGAT * 11696973 TTTTAGAA 1 TTTTAGAT 11696981 TTTTACGAT 1 TTTTA-GAT 11696990 T 1 T 11696991 CCATTCCAGC Statistics Matches: 21, Mismatches: 4, Indels: 2 0.78 0.15 0.07 Matches are distributed among these distances: 8 12 0.57 9 9 0.43 ACGTcount: A:0.23, C:0.03, G:0.14, T:0.60 Consensus pattern (8 bp): TTTTAGAT Left flanking sequence: Indices 11696456 -- 11696955 AACTGTGTGTTGACTGAAAATGAGCTTCTATTTGATTATAGCTATGGTATCCATGGTTACCATGA GCCATGGTGCACCACAACTTCAGCTAGGCCTTGGAAATTCTATGATGCCGGAGGTTCATGCAACA GGTAGGCTTTGGAATGTATTCACGTGGTGCCAGGCTGTCCCATTACGGTTTGATCCACAAAAAAT GCGGGAATTTTTTGCCCAAAAAATGTGACGTCAGTACACTCTTAACCATTCGAAATCAGTTGAGA ACTCAGCGTCTCTTCTCTCGCATTTTTTGTAGATCTACGTAGATCAAGCAGAAATACGACATTCT GACACCACGTGAGTATTGGGTAGTGCTCTAGAAGCCTAACAATCTTACAAAAAGTTTTGAAAACC CCAAAAGATTTTCCAGTTTTTAGGATTTTCTCGCAGCCGAAAACATTTTTTTAGAATTTACAATT CCATTCCAGAAAACTGTCCAAAAGTTTCTCCAAAGTTTAAAGAGC Right flanking sequence: Indices 11696991 -- 11697490 CCATTCCAGCAATTTCTGAAAATTTTAAGTTCCCGCAAAAAGCTTATTTTCAAATATTTTCATAA CATTTTCAAATTGCCGGCAAAATGTAACTTTTATTTGTGCCCCACTGACCAAAAATGTACTTAAA TCAACGAATAATCGCTTAATAAAAAACGACAATATTTATTAAAGTGTGGCTAAAAATGGGCCTTA TTCTCCAGAACTTTAAACCGCCATAACTTTATTTAAAATAAATTTTCAAAACTTCTCATTACGAA ATTCGGTAGTTTTAGGTCATTTTAGGTCTAAAAAAGCAAAGTCTCAAATTTCGGTACTCCACGGG GTTTAAAAAATTAACGATTTCAGGCTTAAATTTTAAAGCTTTTGTTTTCTAAAATTTTTTTGATC TCTAGAAATTGTTTGAGAAGCTTGAAATTAGCGCCATAAACATTTCAGAGAAGGATCGATGCACC ATGATGTTTTCTTACAAATTTCAGGGTTTTTGCACAGAATATCAA Found at i:11697050 original size:10 final size:10 Alignment explanation
Indices: 11697035--11697066 Score: 48 Period size: 10 Copynumber: 3.1 Consensus size: 10 11697025 GCAAAAAGCT 11697035 TATTTTCAAA 1 TATTTTCAAA 11697045 TATTTTCATAA 1 TATTTTCA-AA * 11697056 CATTTTCAAA 1 TATTTTCAAA 11697066 T 1 T 11697067 TGCCGGCAAA Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 10 10 0.53 11 9 0.47 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (10 bp): TATTTTCAAA Left flanking sequence: Indices 11696535 -- 11697034 CAACTTCAGCTAGGCCTTGGAAATTCTATGATGCCGGAGGTTCATGCAACAGGTAGGCTTTGGAA TGTATTCACGTGGTGCCAGGCTGTCCCATTACGGTTTGATCCACAAAAAATGCGGGAATTTTTTG CCCAAAAAATGTGACGTCAGTACACTCTTAACCATTCGAAATCAGTTGAGAACTCAGCGTCTCTT CTCTCGCATTTTTTGTAGATCTACGTAGATCAAGCAGAAATACGACATTCTGACACCACGTGAGT ATTGGGTAGTGCTCTAGAAGCCTAACAATCTTACAAAAAGTTTTGAAAACCCCAAAAGATTTTCC AGTTTTTAGGATTTTCTCGCAGCCGAAAACATTTTTTTAGAATTTACAATTCCATTCCAGAAAAC TGTCCAAAAGTTTCTCCAAAGTTTAAAGAGCTTTTAGATTTTTTGGATTTTTAGAATTTTACGAT TCCATTCCAGCAATTTCTGAAAATTTTAAGTTCCCGCAAAAAGCT Right flanking sequence: Indices 11697067 -- 11697566 TGCCGGCAAAATGTAACTTTTATTTGTGCCCCACTGACCAAAAATGTACTTAAATCAACGAATAA TCGCTTAATAAAAAACGACAATATTTATTAAAGTGTGGCTAAAAATGGGCCTTATTCTCCAGAAC TTTAAACCGCCATAACTTTATTTAAAATAAATTTTCAAAACTTCTCATTACGAAATTCGGTAGTT TTAGGTCATTTTAGGTCTAAAAAAGCAAAGTCTCAAATTTCGGTACTCCACGGGGTTTAAAAAAT TAACGATTTCAGGCTTAAATTTTAAAGCTTTTGTTTTCTAAAATTTTTTTGATCTCTAGAAATTG TTTGAGAAGCTTGAAATTAGCGCCATAAACATTTCAGAGAAGGATCGATGCACCATGATGTTTTC TTACAAATTTCAGGGTTTTTGCACAGAATATCAAAACTTTAAAGTTTATTGTTGCAGCTAGGGCT TCCTTGTAAGCGTTAAAATGCCTGCCTGTTTGACCTTAAGACCTG Found at i:11698217 original size:9 final size:10 Alignment explanation
Indices: 11698203--11698225 Score: 39 Period size: 10 Copynumber: 2.4 Consensus size: 10 11698193 ATTCGGAATT 11698203 TTTTGA-AGA 1 TTTTGATAGA 11698212 TTTTGATAGA 1 TTTTGATAGA 11698222 TTTT 1 TTTT 11698226 TTATACGATC Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 9 6 0.46 10 7 0.54 ACGTcount: A:0.26, C:0.00, G:0.17, T:0.57 Consensus pattern (10 bp): TTTTGATAGA Left flanking sequence: Indices 11697703 -- 11698202 GCATCAGGGCCCTAAAACCGCGCCTGGCTACCATGAAAGCCCTAGTTGCAGCGAAAATTTTCCAA AAATTAACATATTCTTGTTAAACCAAATAGTATCCTCAATTCCAGCCCTAATCCCAATGCTAACC GGCACCAATGTTCCTGAATCAGAAGAAGAAATCGATGCTCCAATCTATGATCAACGCGAAGTCGA GAAGATCCGTGGAATTGCCCATAACATTGCCGAAAACGCGAAAAATCCGGAAAAACTGATGCCAG ACTTCATGGCCGCCAATCCGGGGATCATGTCCACCATGGAGTCGTTGAAGCTGTCAGATTTCGGA AAAACCAGCACAGTGGTGCCGTCGATTTCCACGTCACCGGGTCCGATTTTCACGTTGGCAAATGG GATTCCAGCTGTTGGCACTCCTGGAACCCAATCCTCAACTACTGTTAAGGCTTAACTGATTATGT GTGATAATAAAGACAATCTCTGTTGATTTTCAGCTATTCGGAATT Right flanking sequence: Indices 11698226 -- 11698725 TTATACGATCGGAAGATCGGATTTTATCTATGGAAGATCAGATCCTCAGGATTTCTTAGGTGGAA TCTGATCTTCCATGCCTGAAATTTTCAGCATTCACCTAAGGAGTTCGCTTGAGGTAGATGAAGTT CCGCCTGAACTAGATCCGATTCCACCTATGGAAGATCAGATGGAAGATCAGATCCCACGAATGAA AGTTCATGTTCCACCTATTGAAGATCGGATTCCACCTATGGTAGATCATAACTTTTGGAAGATCA GAATTCATCTGACTGGTAAGCTAGATGTGGTTCTACTTATGATAGATCAGATTCTAACTACTTTA GATCAGAATCCACCTATGGAATTTTAGATTTGACCTTTGGAAGATCAGATCCCACGAATGTAAGT TCAGATTCCACCTGCTGAAGATCAGATTCCAAATAAATGTTTTTTTAAATTTTCAAAACAATTAA TATTTGTCACGTGTTTGCGTTTTGATTGGATTTATTGTGTTTTTC Found at i:11698735 original size:7 final size:7 Alignment explanation
Indices: 11698723--11698736 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11698713 TATTGTGTTT 11698723 TTCAAAA 1 TTCAAAA 11698730 TTCAAAA 1 TTCAAAA 11698737 CAAAAATCAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): TTCAAAA Left flanking sequence: Indices 11698223 -- 11698722 TTTTTATACGATCGGAAGATCGGATTTTATCTATGGAAGATCAGATCCTCAGGATTTCTTAGGTG GAATCTGATCTTCCATGCCTGAAATTTTCAGCATTCACCTAAGGAGTTCGCTTGAGGTAGATGAA GTTCCGCCTGAACTAGATCCGATTCCACCTATGGAAGATCAGATGGAAGATCAGATCCCACGAAT GAAAGTTCATGTTCCACCTATTGAAGATCGGATTCCACCTATGGTAGATCATAACTTTTGGAAGA TCAGAATTCATCTGACTGGTAAGCTAGATGTGGTTCTACTTATGATAGATCAGATTCTAACTACT TTAGATCAGAATCCACCTATGGAATTTTAGATTTGACCTTTGGAAGATCAGATCCCACGAATGTA AGTTCAGATTCCACCTGCTGAAGATCAGATTCCAAATAAATGTTTTTTTAAATTTTCAAAACAAT TAATATTTGTCACGTGTTTGCGTTTTGATTGGATTTATTGTGTTT Right flanking sequence: Indices 11698737 -- 11699236 CAAAAATCAGTATCAAAAAATCAATACTCACTTCTTCGCCAGAAAATGGAGGATTTCAATCGTCG TGCCGAAGAATTGGATCAAGTCGAGAAGAACGTCAGTTTAGGGTTGAAGAAAATTCAAGAGTATG TAACGTTTATCAAATCTTTCAATCATTATCAAATTTTCAGTGAAATGGACAGTATCCAGCTGGAA GTCGAGCCAGACGACGTGGAGATTACGTCGACTAAGCGTGGATTCTGGGAGCACGACATCACGAA TTTGTCGCCGTTTCCGGTTGTATGCAGGGTCCGAGCCACCAGCCCATCGATGTTCGTGGTGAATA AGAATGTGTTCTTGTTGAAGCCCATGGATTTTTTTAAGTTGATGGTTGGTTTTGCCACGTTGCCG AGTATTTACTGTGGCATACTGTAAAGGTACTATTGTACTGCAGCAGTTTTGTTGGAGTACTGTAG GGGTACTGAAGGAGTGCTGTAGGTGTACTGTAGTGTTAATGTAGC Found at i:11700818 original size:10 final size:10 Alignment explanation
Indices: 11700803--11700823 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 11700793 AAATTTCCAG 11700803 GAAAATCCCA 1 GAAAATCCCA * 11700813 GAAAATTCCA 1 GAAAATCCCA 11700823 G 1 G 11700824 GTCCTACCTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.48, C:0.24, G:0.14, T:0.14 Consensus pattern (10 bp): GAAAATCCCA Left flanking sequence: Indices 11700303 -- 11700802 AGTGCTGTAGAAGTGCGTTAGGATTACTGTAGTTTAAAAAAAGTTGTTGTGTTTTGAAGGGAGAT TGAGTTAGGGGTAGTGTAGGAGTATGGTTGTGGAACTTTAGTAGTACTGTAGGTGTATTGTATTG GAATTGTAGGGGTACGTTAGGGTTACTGTGTTTCTGTAGGAACACTCCTGGATTACTCCAGTAGT GCTGTAGGGGTACCGTATTGGTACTGTATGGGTACTATATAGGAACTATAGGGGTACTGTATTGG TACCGTAGGAGGTACTATAGGGTACTGTAGAAGCACTTTAGCATTATTCCAGGAGTGTTGTAGGA TTACTGTAAGATTACTGTAGGAGTACTGTAGCTTCAAAACCAATTTCAGACCGGAGACTTCCACT TTCAAATGATCAGATTCGCGCGAGCGATGGAAGTTGGTGACAAGCTCACCATGAAAGGAAAAATC ATGAATCCTGCGAATATGTAAGTTTCAGAAATTGCAAATTTCCAG Right flanking sequence: Indices 11700824 -- 11701323 GTCCTACCTTCATCTTTATCAGGGCTTTAATAGTGTCTACGAGAAAAGTCCTCTTTCGCTTCACA TCAGAGTGCAGTACCTGAGAAACTCAATTATCTACAACAGTTGGTTTGTGAGTGTTAGGGTTACT GTAGTTGCATGCCTACCAACGCGCCTACCATCTCATGTTTAGGTTATACTACTTTCAGGGAAGTT GGGGAGGCGAACAGTTCTCCCAACAGCCGTTCCTCAGTGGCAACTACTACTCAATTTCAGTTCTG TGAGTTTATAGATTTCTGAGAATTTTTATTATTTTCTATTTCAGCAAAGGACCCACCTACTACAG TATTTATATGGGGAACCTACTGATAACCAAGTATGCATTCAGAAATCCCGCAAATTGGCAAATTG GAAATTTGCTGGGTTATGGAGATTGGACAGTTACCTCTGTTTCAATGTAAGTACCGACTATGTAG ATATCGATTCTTTTACTGAAAAATTTTAGGACCTGCGTTCGTCCG Found at i:11701123 original size:10 final size:9 Alignment explanation
Indices: 11701105--11701123 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11701095 ATTTCTGAGA 11701105 ATTTTTATT 1 ATTTTTATT 11701114 ATTTTCTATT 1 ATTTT-TATT 11701124 TCAGCAAAGG Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 9 5 0.56 10 4 0.44 ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74 Consensus pattern (9 bp): ATTTTTATT Left flanking sequence: Indices 11700605 -- 11701104 ATTATTCCAGGAGTGTTGTAGGATTACTGTAAGATTACTGTAGGAGTACTGTAGCTTCAAAACCA ATTTCAGACCGGAGACTTCCACTTTCAAATGATCAGATTCGCGCGAGCGATGGAAGTTGGTGACA AGCTCACCATGAAAGGAAAAATCATGAATCCTGCGAATATGTAAGTTTCAGAAATTGCAAATTTC CAGGAAAATCCCAGAAAATTCCAGGTCCTACCTTCATCTTTATCAGGGCTTTAATAGTGTCTACG AGAAAAGTCCTCTTTCGCTTCACATCAGAGTGCAGTACCTGAGAAACTCAATTATCTACAACAGT TGGTTTGTGAGTGTTAGGGTTACTGTAGTTGCATGCCTACCAACGCGCCTACCATCTCATGTTTA GGTTATACTACTTTCAGGGAAGTTGGGGAGGCGAACAGTTCTCCCAACAGCCGTTCCTCAGTGGC AACTACTACTCAATTTCAGTTCTGTGAGTTTATAGATTTCTGAGA Right flanking sequence: Indices 11701124 -- 11701623 TCAGCAAAGGACCCACCTACTACAGTATTTATATGGGGAACCTACTGATAACCAAGTATGCATTC AGAAATCCCGCAAATTGGCAAATTGGAAATTTGCTGGGTTATGGAGATTGGACAGTTACCTCTGT TTCAATGTAAGTACCGACTATGTAGATATCGATTCTTTTACTGAAAAATTTTAGGACCTGCGTTC GTCCGGGAGTTCCGACAACTCCTGATCCAAAAGCAACTACTACACCGACTCCGACCACCACAAAA GCCCAGAATATTATCGCCGAGGATCCGAATGGTGGACAACTTGGAGGCGGCGAGCTGGTTGTCAC GAACCCGGGAAGTGTCGGGTCAGGGAGTGGGAATAGTGGAAACTCCAGTAACAATAACAATAGCT CTGGAAATAGTAATTATGGAAGTAATAACTCTGGATCCGGAAATGGGAACTCAAATTCTGGAAAT GGAAATTCTGGAAACGGCAACGGAAATAATGCCGGCAATTCTGGC Found at i:11701211 original size:8 final size:8 Alignment explanation
Indices: 11701198--11701219 Score: 37 Period size: 8 Copynumber: 2.9 Consensus size: 8 11701188 CAGAAATCCC 11701198 GCAAATTG 1 GCAAATTG 11701206 GCAAATTG 1 GCAAATTG 11701214 G-AAATT 1 GCAAATT 11701220 TGCTGGGTTA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 7 5 0.36 8 9 0.64 ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27 Consensus pattern (8 bp): GCAAATTG Left flanking sequence: Indices 11700698 -- 11701197 ATGATCAGATTCGCGCGAGCGATGGAAGTTGGTGACAAGCTCACCATGAAAGGAAAAATCATGAA TCCTGCGAATATGTAAGTTTCAGAAATTGCAAATTTCCAGGAAAATCCCAGAAAATTCCAGGTCC TACCTTCATCTTTATCAGGGCTTTAATAGTGTCTACGAGAAAAGTCCTCTTTCGCTTCACATCAG AGTGCAGTACCTGAGAAACTCAATTATCTACAACAGTTGGTTTGTGAGTGTTAGGGTTACTGTAG TTGCATGCCTACCAACGCGCCTACCATCTCATGTTTAGGTTATACTACTTTCAGGGAAGTTGGGG AGGCGAACAGTTCTCCCAACAGCCGTTCCTCAGTGGCAACTACTACTCAATTTCAGTTCTGTGAG TTTATAGATTTCTGAGAATTTTTATTATTTTCTATTTCAGCAAAGGACCCACCTACTACAGTATT TATATGGGGAACCTACTGATAACCAAGTATGCATTCAGAAATCCC Right flanking sequence: Indices 11701220 -- 11701719 TGCTGGGTTATGGAGATTGGACAGTTACCTCTGTTTCAATGTAAGTACCGACTATGTAGATATCG ATTCTTTTACTGAAAAATTTTAGGACCTGCGTTCGTCCGGGAGTTCCGACAACTCCTGATCCAAA AGCAACTACTACACCGACTCCGACCACCACAAAAGCCCAGAATATTATCGCCGAGGATCCGAATG GTGGACAACTTGGAGGCGGCGAGCTGGTTGTCACGAACCCGGGAAGTGTCGGGTCAGGGAGTGGG AATAGTGGAAACTCCAGTAACAATAACAATAGCTCTGGAAATAGTAATTATGGAAGTAATAACTC TGGATCCGGAAATGGGAACTCAAATTCTGGAAATGGAAATTCTGGAAACGGCAACGGAAATAATG CCGGCAATTCTGGCAATGGTAGGTGGCCGAATATTTCGCGCACCCGCTACCGCCTACAACCGCAA GTTACCGCCCGCTACCGTCCGCTACCGCCCGCTACCACCCGTTAC Found at