TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:5393911 original size:9 final size:9 Alignment explanation
Indices: 5393899--5393917 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 5393889 ATAATGGAAA 5393899 AAATGATAT 1 AAATGATAT * 5393908 AAATTATAT 1 AAATGATAT 5393917 A 1 A 5393918 CTATCCTTAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37 Consensus pattern (9 bp): AAATGATAT Left flanking sequence: Indices 5393399 -- 5393898 CGCATCCTTTTAGGCTAGAAGTCTGCATTAGCAGAATAACTTTTGAGCTTTCACCGAATGTCTGT CCCATGTCTGCTCTCTCTTTTCCTTTTTGTTTTTGTTTTCCTCTGGTCAATGTTTCAATTCCTTC TGGTTTTTTTGAATCACAATAAACATTCTCCAGAAAATTGTCTCGATTCTCACTTGTTGTGTTGA AAAATATTCACGGAAATCGTTCGGGCAGTAGGTTAGAATGCGGAATTCAAAATCCTGGAATAAAA AATAGTTATGAATCTGTTACATGTGATCTTTGTTGTATCACTGATCACTATTCCCGTGTTCCTAG CTTCTTCACATGCTTCATCATTCTTTGAGCTCTGGTAACTTATTTTGCATGGCGTGTTATCAGTG AGTTGTTGAATGGTGTGACATGAATTTCCGAGAGAAAAACTATAGAAAATAATTATGTATTTGGG GACTTTCGAAGTACAATGAAATGGGGGAACGAAGCATAATGGAAA Right flanking sequence: Indices 5393918 -- 5394417 CTATCCTTATTAATTATTCTGCAATCAAATATGGAAAAGATCACGCAAGTTTGGAGGAAAGATTG GGAATGGAAATTGACTAGATTCGTTCGGAGATTCAGATGAATACTTCGTCGATTATTGAATACTG AGCACGACCCGGTTGAGGAATGAATTCGAGCCAATCTGATGGAGTATTCGGTAGAAGACCCATTG TATGTACTTTATAGATGGCAAGACCGATTGCTCCGAGGTTTCCAAGGCAGAAGATGAGCTTGTGA ATAAACATTGATCCAGTTGCAGGGCTCTGAAAATGTTAGAATATTTTTTTGTTTAACGCCTTCTC CAAACAACAAAAACTAAAAGGTACAAAAACCAGTACTAATTAGCTTCAAACTATAGTTTGTGGGA ACTCGCAACTTACCTCAAGCGGTTTGAATGTGGAATTGACTGCGAATAATGCTTTCAGCGGCCTA AACACCATCATTCCGACCATCATAATTGGGAAAATCGACACACCG Found at i:5395011 original size:9 final size:9 Alignment explanation
Indices: 5394997--5395017 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 5394987 CTCGGTTTTA * 5394997 TTTATAACT 1 TTTATAAAT 5395006 TTTATAAAT 1 TTTATAAAT 5395015 TTT 1 TTT 5395018 TCAGATCAAG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62 Consensus pattern (9 bp): TTTATAAAT Left flanking sequence: Indices 5394497 -- 5394996 GTGCCAGATGCTCGTGTTGATCAGCGGATCGATCGGCTTCGGCCTGAAAATTGAGAAATTATAAA ATTAAGGTTTTAATAATAAGCAGATTTTTTTCTTTCTTAATGTTTTTTAAATACACAATTTTAGC GAATAACTGTTTTTTTAAGACTTTTCAATTCTCGAAGAAATTCAACTCACGCTATGTTGAACGGT GGCAGCTGTCGAGTAGAAGCCTGGCGGGTTAAAATTACTGTCCGCAGTACGACAATTCTTCGAAG AGTAAGTGTAGTCAAGTTTCCAAGCCGATAGTGACATTCTGGAAAAGAATTGAATATTTAAGAGC AAGAAACAAATGGCAATGAAAATTAATGAAAGAGCAAAAATCGATAAATACGCCAGGTGGTTGCT GACGCGTTCTTTGATCGCGTTGGCGCACTCTCGGTGTCGGCATAAAATTTAAACTGATATTTTTC TTCCCTCGGCGTTTATTGTTGTTTTTGTTTTTTCTCTCGGTTTTA Right flanking sequence: Indices 5395018 -- 5395517 TCAGATCAAGATATGAGTGGAGCAGTTTATGGAGGAGGTATGGGAACTTTGATCTTTTAAGTTAT AGATAAAACGCCGTTTTCTTTGCAGACGAGGTTAGCGGCTTGGTTTTCGATGCCGGATCTCAATC ATTCCGCGTGGGATTTGCTGGAGAAGAATACCCAAAGGCAAGAAACATTTCAAGAATTGATAAAT TTATACCTTCAAATATATTATTGCTTTATTTTTTTAGGGAGATATTCCATCATACATTGCCGTTC AAGAAGCACTTCCTGATGATACTATTGAGAAACAAGAGGCTATGGAAGAAGTACGCAGTTTCAAT TTTTAATTCATTTTCAATGAAATCATTATTTTTAGGGTGATAACTCGAAAGTGCAAACAAAACGC GAGAAGAATTTTTTCATCGGAACGACCAAAATCATTGTGCCACGCGCCAGAACTAACATGGAAAG TTTTATGAAAGAAGGATTAAGTGAGTAATTTGACAGAAGTTAAAG Found at i:5398702 original size:8 final size:9 Alignment explanation
Indices: 5398691--5398708 Score: 29 Period size: 8 Copynumber: 2.1 Consensus size: 9 5398681 TTCTATTCTT 5398691 CTCTC-AAA 1 CTCTCGAAA 5398699 CTCTCGAAA 1 CTCTCGAAA 5398708 C 1 C 5398709 CGGAAAAGTT Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 8 5 0.56 9 4 0.44 ACGTcount: A:0.33, C:0.39, G:0.06, T:0.22 Consensus pattern (9 bp): CTCTCGAAA Left flanking sequence: Indices 5398191 -- 5398690 TTTGGCGGCGAATATACGGAGATTTTTGAAACCCCTCTTTTTGAAAACATTAAGGGTTTGAGCGA ATTTACGCTCTACAATTTCGAGTAGTATTTTTGAAAAAAAGTGCATAATTAAAAAATGTCTGGGT TTTTAAGTTAACGACAGGTTTACAGAAAAACATTTTGGTTTAAAAAATTCTTTCAAGAAATCTCC AGCCTTGCCGCAAATACCCAACGAGACCCAAAAAGTTCATTTTCAGATGCTTCAACGCTTCGAAA ACCACACCACGCGGCTTGGACTGTGAGAAGGAATTTGTGGCTCACGCAATTTGTACAGAAGAGGC GAATAACAAATCCTAAGCTGTATTATTCCTTATTTTGAATCTGTAATAAACTTTGCAATCCTCTT TGTCCTTTGAAAATCACACAAAAAAGAATAACATCGCAGGTAATTTGAGCCGAAACTCTTGGGAA ATTGCTCACTTTTCACTTGGAAACACTTTTTGGAATTCTATTCTT Right flanking sequence: Indices 5398709 -- 5399208 CGGAAAAGTTCCTTGAAACGGAGAAAAGTGCACGCAATTTTCTTTAATTCAATTGAATTGTCCCT CGAGAAGTCGTGACTCCAATTTTCTTTTATAAATTTTTTCCTACGTTTCCCTTAAAACCTGATTG ATTTGTGATTCAAGTTGGTTGGAAATTTCATTTCTTTCTTCAAATTATGCCTGCCAAGTGTGATA AGCAGCTGTCACTTTCAGAATATACATTTTCCTTTTTTTTGAGAAATGAAATGAGCTTTTCTTCT TGCTCTTTTTCTTGTTCTTCTTTTAGTATTACCGGTACAGAGAGTGTAGATAGTTAGAGAGTGAC AGACATCCGGGACCCAATGGGGCGGGGCGCGCGGAAGAGATGATTTGTGTCGATATACGAAGTTC TCCTCGTTGTCATCATTTGTCATCATCAAACAAGATCATGACTAACAAATGATGGCTTAATGTAA ACAAAAAAAATAATATTTTGGTTATTTATAAGAACTTAAAGGTAG Found at i:5399120 original size:10 final size:10 Alignment explanation
Indices: 5399105--5399124 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 5399095 GTTCTCCTCG 5399105 TTGTCATCAT 1 TTGTCATCAT 5399115 TTGTCATCAT 1 TTGTCATCAT 5399125 CAAACAAGAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50 Consensus pattern (10 bp): TTGTCATCAT Left flanking sequence: Indices 5398605 -- 5399104 AGAATAACATCGCAGGTAATTTGAGCCGAAACTCTTGGGAAATTGCTCACTTTTCACTTGGAAAC ACTTTTTGGAATTCTATTCTTCTCTCAAACTCTCGAAACCGGAAAAGTTCCTTGAAACGGAGAAA AGTGCACGCAATTTTCTTTAATTCAATTGAATTGTCCCTCGAGAAGTCGTGACTCCAATTTTCTT TTATAAATTTTTTCCTACGTTTCCCTTAAAACCTGATTGATTTGTGATTCAAGTTGGTTGGAAAT TTCATTTCTTTCTTCAAATTATGCCTGCCAAGTGTGATAAGCAGCTGTCACTTTCAGAATATACA TTTTCCTTTTTTTTGAGAAATGAAATGAGCTTTTCTTCTTGCTCTTTTTCTTGTTCTTCTTTTAG TATTACCGGTACAGAGAGTGTAGATAGTTAGAGAGTGACAGACATCCGGGACCCAATGGGGCGGG GCGCGCGGAAGAGATGATTTGTGTCGATATACGAAGTTCTCCTCG Right flanking sequence: Indices 5399125 -- 5399624 CAAACAAGATCATGACTAACAAATGATGGCTTAATGTAAACAAAAAAAATAATATTTTGGTTATT TATAAGAACTTAAAGGTAGTAGGAGATTTCAGAAATGCCAAAACTTAAAAACGAAAAATTAAAAA ATATTAAAAAAAAACTATTTTATACAACGAGATATTCCCATTGTGACTTATGTATCTTCCTGTCT GAATTTCCGCAGGAATTAAAGCTTCAAAACCAATTTTTGACCAATCAGATGGAAAAAATGGGCTC AGATTCTCATTTCAAAGGGGATTCAAACTCTAGAAAAAAAAGTTATTGGAATTTCTGATTTTCAG ACTTTTAAAGAAAATATTTTAAATCAATCATTCACGCTACTCCACCTCTAAAAACCGAATTCATA GTCTTATTCCAGTAATTCCAAAGTGACGTGTGTATTACCTCCAATTCAAAGATCATGCCATCAAA TTGCGGTTTTTCAAGGATTTTCAATGTTTCTCTCCTATAATTAAC Found at i:5399253 original size:7 final size:7 Alignment explanation
Indices: 5399229--5399254 Score: 31 Period size: 7 Copynumber: 3.7 Consensus size: 7 5399219 CAGAAATGCC * 5399229 AAAACTT 1 AAAAATT ** 5399236 AAAAACG 1 AAAAATT 5399243 AAAAATT 1 AAAAATT 5399250 AAAAA 1 AAAAA 5399255 ATATTAAAAA Statistics Matches: 14, Mismatches: 5, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.73, C:0.08, G:0.04, T:0.15 Consensus pattern (7 bp): AAAAATT Left flanking sequence: Indices 5398729 -- 5399228 GAGAAAAGTGCACGCAATTTTCTTTAATTCAATTGAATTGTCCCTCGAGAAGTCGTGACTCCAAT TTTCTTTTATAAATTTTTTCCTACGTTTCCCTTAAAACCTGATTGATTTGTGATTCAAGTTGGTT GGAAATTTCATTTCTTTCTTCAAATTATGCCTGCCAAGTGTGATAAGCAGCTGTCACTTTCAGAA TATACATTTTCCTTTTTTTTGAGAAATGAAATGAGCTTTTCTTCTTGCTCTTTTTCTTGTTCTTC TTTTAGTATTACCGGTACAGAGAGTGTAGATAGTTAGAGAGTGACAGACATCCGGGACCCAATGG GGCGGGGCGCGCGGAAGAGATGATTTGTGTCGATATACGAAGTTCTCCTCGTTGTCATCATTTGT CATCATCAAACAAGATCATGACTAACAAATGATGGCTTAATGTAAACAAAAAAAATAATATTTTG GTTATTTATAAGAACTTAAAGGTAGTAGGAGATTTCAGAAATGCC Right flanking sequence: Indices 5399255 -- 5399754 ATATTAAAAAAAAACTATTTTATACAACGAGATATTCCCATTGTGACTTATGTATCTTCCTGTCT GAATTTCCGCAGGAATTAAAGCTTCAAAACCAATTTTTGACCAATCAGATGGAAAAAATGGGCTC AGATTCTCATTTCAAAGGGGATTCAAACTCTAGAAAAAAAAGTTATTGGAATTTCTGATTTTCAG ACTTTTAAAGAAAATATTTTAAATCAATCATTCACGCTACTCCACCTCTAAAAACCGAATTCATA GTCTTATTCCAGTAATTCCAAAGTGACGTGTGTATTACCTCCAATTCAAAGATCATGCCATCAAA TTGCGGTTTTTCAAGGATTTTCAATGTTTCTCTCCTATAATTAACGTCCTTTTCATTCCATTTTT TGTCAAACTCATTTCCATATCCTTTTTTTTTAGACTCTTCTTCTTTCTTTTTCCACTTTAAACAT ATGTTTATGTATGTATATCCGTTTTTCTTCGCCGTTTCCTCCATT Found at i:5399262 original size:10 final size:10 Alignment explanation
Indices: 5399243--5399267 Score: 43 Period size: 10 Copynumber: 2.5 Consensus size: 10 5399233 CTTAAAAACG 5399243 AAAAATTAAA 1 AAAAATTAAA * 5399253 AAATATTAAA 1 AAAAATTAAA 5399263 AAAAA 1 AAAAA 5399268 ACTATTTTAT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (10 bp): AAAAATTAAA Left flanking sequence: Indices 5398743 -- 5399242 CAATTTTCTTTAATTCAATTGAATTGTCCCTCGAGAAGTCGTGACTCCAATTTTCTTTTATAAAT TTTTTCCTACGTTTCCCTTAAAACCTGATTGATTTGTGATTCAAGTTGGTTGGAAATTTCATTTC TTTCTTCAAATTATGCCTGCCAAGTGTGATAAGCAGCTGTCACTTTCAGAATATACATTTTCCTT TTTTTTGAGAAATGAAATGAGCTTTTCTTCTTGCTCTTTTTCTTGTTCTTCTTTTAGTATTACCG GTACAGAGAGTGTAGATAGTTAGAGAGTGACAGACATCCGGGACCCAATGGGGCGGGGCGCGCGG AAGAGATGATTTGTGTCGATATACGAAGTTCTCCTCGTTGTCATCATTTGTCATCATCAAACAAG ATCATGACTAACAAATGATGGCTTAATGTAAACAAAAAAAATAATATTTTGGTTATTTATAAGAA CTTAAAGGTAGTAGGAGATTTCAGAAATGCCAAAACTTAAAAACG Right flanking sequence: Indices 5399268 -- 5399767 ACTATTTTATACAACGAGATATTCCCATTGTGACTTATGTATCTTCCTGTCTGAATTTCCGCAGG AATTAAAGCTTCAAAACCAATTTTTGACCAATCAGATGGAAAAAATGGGCTCAGATTCTCATTTC AAAGGGGATTCAAACTCTAGAAAAAAAAGTTATTGGAATTTCTGATTTTCAGACTTTTAAAGAAA ATATTTTAAATCAATCATTCACGCTACTCCACCTCTAAAAACCGAATTCATAGTCTTATTCCAGT AATTCCAAAGTGACGTGTGTATTACCTCCAATTCAAAGATCATGCCATCAAATTGCGGTTTTTCA AGGATTTTCAATGTTTCTCTCCTATAATTAACGTCCTTTTCATTCCATTTTTTGTCAAACTCATT TCCATATCCTTTTTTTTTAGACTCTTCTTCTTTCTTTTTCCACTTTAAACATATGTTTATGTATG TATATCCGTTTTTCTTCGCCGTTTCCTCCATTTTCTTCGGCTGCT Found at i:5399926 original size:8 final size:8 Alignment explanation
Indices: 5399909--5399927 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 5399899 GGATGTTCGA * 5399909 TTTCCGGT 1 TTTCCAGT 5399917 TTTCCAGT 1 TTTCCAGT 5399925 TTT 1 TTT 5399928 TTGAGCCAAC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.05, C:0.21, G:0.16, T:0.58 Consensus pattern (8 bp): TTTCCAGT Left flanking sequence: Indices 5399409 -- 5399908 AAACTCTAGAAAAAAAAGTTATTGGAATTTCTGATTTTCAGACTTTTAAAGAAAATATTTTAAAT CAATCATTCACGCTACTCCACCTCTAAAAACCGAATTCATAGTCTTATTCCAGTAATTCCAAAGT GACGTGTGTATTACCTCCAATTCAAAGATCATGCCATCAAATTGCGGTTTTTCAAGGATTTTCAA TGTTTCTCTCCTATAATTAACGTCCTTTTCATTCCATTTTTTGTCAAACTCATTTCCATATCCTT TTTTTTTAGACTCTTCTTCTTTCTTTTTCCACTTTAAACATATGTTTATGTATGTATATCCGTTT TTCTTCGCCGTTTCCTCCATTTTCTTCGGCTGCTGCTCCTTTTTTTTGGGCCGATAATTCAATTC AGTCCTGTCTTTCAATGGAAAAGAGGTCCTCAAGAAGAGCTATTTTTATTCCTTTTTCTCTATAA TAATCACAGAGAGTGTATCATTTGGAAAGCCGGATGGATGTTCGA Right flanking sequence: Indices 5399928 -- 5400427 TTGAGCCAACATTCTAGCTGTCCTACATTGATTTCTTTATTTTTTCTGAAAATTGACTTTGGGAC TTTTTTTCTCTTTCTTGGCGTGCCTACCTCTTGCCTATTTTCATTTTGAAATAAGACACTTGTGT AGGCAAACGTTTAGGCATCATAAAAATTGTAGGTAGGCTGGCAGGTTATTTGTGCCTACCTGAAG ACCTACTGTGTAGATGTTAGGTCTTCAACCTGAATAAAATAAGTAGTGTACTTCCTTCTTAAAAT ACGATTCGGGTTCCAGAACTTAAAATGATTTTTTAAATTTTCAGGTCTTCCCATAAGTTCACACA GTGGTTGCTAAGTTTGAGCAATTTGAAATAGTCACGTCTAAAACTGCTCAATAATAATCTTAACC ATACTAAACATGTACATTTATAAAAGATTCGATTTTGTTCTGTCAGACGTGTTCAAAAGTTTTGA AAAATATACAAAACTTATGGGAAGACCTGATAAAAAGCAATGAAA Found at i:5400654 original size:8 final size:8 Alignment explanation
Indices: 5400641--5400656 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5400631 TTCTAAATTC 5400641 AATTTTAA 1 AATTTTAA 5400649 AATTTTAA 1 AATTTTAA 5400657 TTATGTTCTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (8 bp): AATTTTAA Left flanking sequence: Indices 5400141 -- 5400640 AGGTCTTCAACCTGAATAAAATAAGTAGTGTACTTCCTTCTTAAAATACGATTCGGGTTCCAGAA CTTAAAATGATTTTTTAAATTTTCAGGTCTTCCCATAAGTTCACACAGTGGTTGCTAAGTTTGAG CAATTTGAAATAGTCACGTCTAAAACTGCTCAATAATAATCTTAACCATACTAAACATGTACATT TATAAAAGATTCGATTTTGTTCTGTCAGACGTGTTCAAAAGTTTTGAAAAATATACAAAACTTAT GGGAAGACCTGATAAAAAGCAATGAAAACGGGAAGTTTTATTTTAAAAGTTTTAATAAAAATAGA AAATCATTCAAAATCGACGAATTGTGCTGAATTTTTAATTCACGCGCAAATGATTTTATGTTCTA GTTATCTAAACAATATTGACAATTGTTGACCCATTTGATAATTATATTTTTCACCTTAATTATTT ATTCCAGAATTAAATTTTGTGTCAGAGTTTTTCAATTCTAAATTC Right flanking sequence: Indices 5400657 -- 5401156 TTATGTTCTGTTGTACTCAGTGAATACTAATAAATCGAAATGATAAAACAAATTATTACATTTAA AAGTTGCTTTCTAACTAACTCTAACTATAAGTCATCTAAAATAATTAACTTCATAAATTTATTGA AACAGTAGTTTCTTGCCAAAACGCATTTATTGCAGAAATTTACCAAAAGTCTCTCTCGTTTACTT TAATGTTTCCATCAACTTCTATAATTAATATTTTGATTCCAGATATGCCTACAGTATCCCAATCA GTGATAGGAAATAGTGCAGAAGAGCGAGAACTTCAAATATGCCGTCTTGGGTGGTCTCTTCTTCT TTTGTGGTTGGTTATGATAATTTACATGACAAAGGCACGTTTTTGTTGTTTGGCTGTTAACAATT GATATGATAATTCGTTCTTTTTTTTGTAGGAGATTTGGTTCGGTGAGACTTCGATCGGAATAGAA GAAGAACGTTTGATTCGGAAAAGAAAACGGTCAATTTATAGTTTT Found at i:5401965 original size:7 final size:7 Alignment explanation
Indices: 5401953--5401966 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5401943 TCGACGATTC 5401953 AGAAATT 1 AGAAATT 5401960 AGAAATT 1 AGAAATT 5401967 TATTTTTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): AGAAATT Left flanking sequence: Indices 5401453 -- 5401952 TAAATCTAAGCAAATTTTGCTTTATTAGAAACATTTTCAAATAAGTATATAAAATCGAGTTGCCT CACTGGTGAAATATAACTATTTCACAGTGTTTTGCAAAATTGTTTCAACCATTACTCAAAGGAAA TTTATAAGTTGAAGAAAAAATAAATTATGCATTTTTTTGGTTACTAGATATTCATTTCATAATAT ACCAAGAAAAACACATACCTTTAAAACAAGTTTTTTGAAACAGTCAAAAAATATACTCAATTAAA ATAGTATGAAGAATCTAAAGTTTCACAGCTAGTTGTTTGCTTTCGTTTGGCTTTATTGCCCTTTG TATTTATAGATTATTCAGTTTTTAAATCTTTCTGAATTAATGAATAATAGTAATTAATTAACACT ACAATGAAGGTTTTTTGAAAACACTAAGAAAAAAATATAGCCGGAAATAGTTTAAAAATCCGTTT AGTTTTTGAGAAATTTCAGTTTTTCTTAAATTTTTTCGACGATTC Right flanking sequence: Indices 5401967 -- 5402466 TATTTTTTTAAATTCATATTTCTATAGTTCTGTAAAAGAGTAGAAGATAAATTTTGTTAGATTCT TAATTTTGAGGTTCAGACAATTCTAACAAAAACGCAGTGTTTTGAAAATGTTTGAAATTGAATTT TTCTGAAAATCAACAGTATTTAGCTACTTGTTAAATATTAAATCCAAATATCCACTGACCTTACT TCAACTATAAAATATGCTTTAAAATTTGGCACCAAGTTGAATAAAAAAAAAAGAAAACAATTTGC AAAATTTTTAAAAATTGATTATTTAAATGTTCTGCATATATAAAATTTTATAAAATTATGATTAG GTTCTTCACAAGTTTAACTAGACATCCACACAGTACACAGATATCATAAAAATTTAAGAATATTA AACGGAACACATTTGTTCTATTTATTAAAATAGGTTATTGATACAGTTAGAATTTTTGGATATGT GGCCTTAATACTTATTTTGACTCTTATGCTTCCAGATATTTTAAA Found at i:5402013 original size:8 final size:8 Alignment explanation
Indices: 5401998--5402017 Score: 26 Period size: 8 Copynumber: 2.6 Consensus size: 8 5401988 CTATAGTTCT 5401998 GTAAAAGA 1 GTAAAAGA * 5402006 GTAGAAGA 1 GTAAAAGA 5402014 -TAAA 1 GTAAA 5402018 TTTTGTTAGA Statistics Matches: 10, Mismatches: 2, Indels: 1 0.77 0.15 0.08 Matches are distributed among these distances: 7 3 0.30 8 7 0.70 ACGTcount: A:0.60, C:0.00, G:0.25, T:0.15 Consensus pattern (8 bp): GTAAAAGA Left flanking sequence: Indices 5401498 -- 5401997 TATATAAAATCGAGTTGCCTCACTGGTGAAATATAACTATTTCACAGTGTTTTGCAAAATTGTTT CAACCATTACTCAAAGGAAATTTATAAGTTGAAGAAAAAATAAATTATGCATTTTTTTGGTTACT AGATATTCATTTCATAATATACCAAGAAAAACACATACCTTTAAAACAAGTTTTTTGAAACAGTC AAAAAATATACTCAATTAAAATAGTATGAAGAATCTAAAGTTTCACAGCTAGTTGTTTGCTTTCG TTTGGCTTTATTGCCCTTTGTATTTATAGATTATTCAGTTTTTAAATCTTTCTGAATTAATGAAT AATAGTAATTAATTAACACTACAATGAAGGTTTTTTGAAAACACTAAGAAAAAAATATAGCCGGA AATAGTTTAAAAATCCGTTTAGTTTTTGAGAAATTTCAGTTTTTCTTAAATTTTTTCGACGATTC AGAAATTAGAAATTTATTTTTTTAAATTCATATTTCTATAGTTCT Right flanking sequence: Indices 5402018 -- 5402517 TTTTGTTAGATTCTTAATTTTGAGGTTCAGACAATTCTAACAAAAACGCAGTGTTTTGAAAATGT TTGAAATTGAATTTTTCTGAAAATCAACAGTATTTAGCTACTTGTTAAATATTAAATCCAAATAT CCACTGACCTTACTTCAACTATAAAATATGCTTTAAAATTTGGCACCAAGTTGAATAAAAAAAAA AGAAAACAATTTGCAAAATTTTTAAAAATTGATTATTTAAATGTTCTGCATATATAAAATTTTAT AAAATTATGATTAGGTTCTTCACAAGTTTAACTAGACATCCACACAGTACACAGATATCATAAAA ATTTAAGAATATTAAACGGAACACATTTGTTCTATTTATTAAAATAGGTTATTGATACAGTTAGA ATTTTTGGATATGTGGCCTTAATACTTATTTTGACTCTTATGCTTCCAGATATTTTAAAATTCAA GTTGTTAGTCTGATTGTTCTAAATGTTCTGGTTACAAGATTTTTC Found at i:5403733 original size:7 final size:7 Alignment explanation
Indices: 5403721--5403750 Score: 32 Period size: 7 Copynumber: 4.6 Consensus size: 7 5403711 AATTTAAGTG 5403721 AAACTCA 1 AAACTCA 5403728 AAACTC- 1 AAACTCA * 5403734 -AACTCC 1 AAACTCA * 5403740 AGACTCA 1 AAACTCA 5403747 AAAC 1 AAAC 5403751 GACAGAAATT Statistics Matches: 18, Mismatches: 3, Indels: 4 0.72 0.12 0.16 Matches are distributed among these distances: 5 5 0.28 7 13 0.72 ACGTcount: A:0.50, C:0.33, G:0.03, T:0.13 Consensus pattern (7 bp): AAACTCA Left flanking sequence: Indices 5403221 -- 5403720 AAGAGGTGTAAAAGGGAAATATGATTCATTGGGAGGTGGACAGAGATGTAAAATTATAGGTTAGA TTAACGAATTGACGTTACTACCAGGAGTGGGCGGCAAATTCGGCAAATGTGCCGTTCTATGCAAA CTTGCAAAAATTTGTAATTTTTAGATGTTTTTGGAGCACCAAAACTGCCTGAACAAAAACATACG TGCCTGCCACACACCTTCCTATTTCTGAAAGTACAACAATAATCCATAGTGAACATTCAACAACA AGCAGTCAGTCTGACACAAAATTTCAAACAATTCAGAAACAGTAATTAATTTGAGAAATATTTTT TGAAAATTATTTCAGAACCATGTTTATTTATTTGGAAGACAAAATTATTTCTGTAGCTTAATTTG ATACTATTCTTCATGTGAAATTGAAAAATTATTTACACCTGAACCGGAAAAAATTACTTTACTAC TAGTGTTCTAGTCAGTTATTCAATTAAAAATGCATAATTTAAGTG Right flanking sequence: Indices 5403751 -- 5404250 GACAGAAATTAGTAGGGCGTTCCGTAATGCAACCATATATTCATTTTAAAAGAAATAACCTAAAA ACAAGGTTCAGAATCTGATCACCCAATTGGCTGCACCATTTGAAGTGAGCATTGACATTGTTGAA AATGGATCTAGAAAACATCGAGGATTTGCTTTTGTACAATGCAGATCACTTGCCGAGGCAAACGT TTTGTTGGCTAAATTTTCAGGGGTATGCTACTTTTTTCTTAGATTTTGATTTTTTTTAATGGAAA AGTCGTATAGGAATTCATTAAAAATTTCAGAGGATATTACAAGGGAGCCTTAATAAGGCACTGAA AAGGTTTGACAACAATGCTCTGATTGATTATTTGATAATCCTAGATTCAATCAAACCATTTCTGA TTTTCAATTCCAATTAATGTATTTTTCTGAATTAATACTGTTTCATAAAGCGTATAAATAGTTTT TTCATAATTCAGTATTATTTTAGAATATACAGTAATTTGTATCCA Found at i:5404261 original size:8 final size:8 Alignment explanation
Indices: 5404248--5404263 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5404238 TAATTTGTAT 5404248 CCAATCAC 1 CCAATCAC 5404256 CCAATCAC 1 CCAATCAC 5404264 TTCAGATTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12 Consensus pattern (8 bp): CCAATCAC Left flanking sequence: Indices 5403748 -- 5404247 AACGACAGAAATTAGTAGGGCGTTCCGTAATGCAACCATATATTCATTTTAAAAGAAATAACCTA AAAACAAGGTTCAGAATCTGATCACCCAATTGGCTGCACCATTTGAAGTGAGCATTGACATTGTT GAAAATGGATCTAGAAAACATCGAGGATTTGCTTTTGTACAATGCAGATCACTTGCCGAGGCAAA CGTTTTGTTGGCTAAATTTTCAGGGGTATGCTACTTTTTTCTTAGATTTTGATTTTTTTTAATGG AAAAGTCGTATAGGAATTCATTAAAAATTTCAGAGGATATTACAAGGGAGCCTTAATAAGGCACT GAAAAGGTTTGACAACAATGCTCTGATTGATTATTTGATAATCCTAGATTCAATCAAACCATTTC TGATTTTCAATTCCAATTAATGTATTTTTCTGAATTAATACTGTTTCATAAAGCGTATAAATAGT TTTTTCATAATTCAGTATTATTTTAGAATATACAGTAATTTGTAT Right flanking sequence: Indices 5404264 -- 5404763 TTCAGATTTTTTTCCTCTTCCATATTTTTCTTTTATATTTGAAACAGTAATATTTTCAGCTCTTC ACAAAAGTCAATTTCGCAAAGAAAGAGCCAAAACCAGCGGAGAATGTTATGAGCAATGTATGCTT TCACTCATTTGGAATAGTTATTTAATTTTCATACTTTCAGATATCAAATGTCTTCGTACGTGGAA TATCTCGTGACATGCCGGATACTGAACTCTATCAAGCTTTTGGAGGAATCACTGACGGAGTTGTT CAATGCCACGTGGCAGATGGATATGGTTTTGTGCTCTTTGACACAAGAGCCAATGCACAGAAAAA GATAGTCGAGATGGATGGGAAGACATTGGTTGGGAAATGGAGAAACAAAATTTAAAGATTTTTTT TGGATTTTCAGAATGGAAAGCTGATTTCTGTGAGCTGGGCAAGACCGGATACTGTTGGAAGGAAG AGAAAAAGACCGATGAGTGAGGAAAGGTGAATCTTGTTTCATGTT Found at i:5405410 original size:9 final size:9 Alignment explanation
Indices: 5405393--5405411 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 5405383 TATTCCAATT 5405393 ACCACCACA 1 ACCACCACA * 5405402 ACCAGCACA 1 ACCACCACA 5405411 A 1 A 5405412 ATACTTCAAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.47, G:0.05, T:0.00 Consensus pattern (9 bp): ACCACCACA Left flanking sequence: Indices 5404893 -- 5405392 TAATTTTTTTTGTTTTTATTTTGTGATTTTTATCTGACGACTTTTTTTTCAATATTTTTACCACC GTTAAATATGTGATTATTATTTATGTATAAAATATGTGAAACTAGGATGCTGTCGAAAATTTGCA AATTTTTCTTTTGAAAATATTTTTTACTGAGAAACCGAAACAATGAAAGAAATAGATTGCAAATT ATATAACTAACAATTTGATGATTCTCTGAAAAAACGAAATTCTTCTGTTGCTATAAGTCATTTTA AATTATCGAAATAAGGAAAACCGGTTACACTCCGTTTTGAACGTAGAAAAGTGAAAGACAGTTTG AAAGATATTCGATACATGTGTAGTTGGTCTAAATTTATGGCTTGAAAACTATGTCAGTTTCAATT ACCAGAAACAATAATACAAACTCCATTTTCCAGCCCAACACCATCCAGCACTGATCTTGGACTTC TTCTCTTCTCAAACGTCCAGTAATTCCATCTCATTTATTCCAATT Right flanking sequence: Indices 5405412 -- 5405911 ATACTTCAACCATCACTTATTCCATTCCTTAACCCATCATTCCCATTATTATTCCCTCAGAATCC ACTTCTAGCTCAACCTGATTTAACGCAATATTTGAATTTTTTGATGTAAAATAAAATAAAATTGT GGAGGAATACATATTATTTACGTAGCACAGCCTCAAGTTCAAAATGAAAAAAAACAAACGGCGGG AAATTAGAAAAAAAGAATCGAAAATCAATTATTCCTATTATTTTTTGATAACATAACGGCTGCAT ATCAACAAGCGAAATGACTGAAATTCATAACGCCGAGGTGAGTTCATTTTCAGATTTTCCGAGAT TTTCCGTTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAG ATAAATGACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCA AGATTTGTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAA Found at i:5405730 original size:8 final size:9 Alignment explanation
Indices: 5405717--5405740 Score: 32 Period size: 10 Copynumber: 2.7 Consensus size: 9 5405707 AGGTGAGTTC 5405717 ATTTTC-AG 1 ATTTTCGAG 5405725 ATTTTCCGAG 1 ATTTT-CGAG 5405735 ATTTTC 1 ATTTTC 5405741 CGTTCATTTT Statistics Matches: 14, Mismatches: 0, Indels: 3 0.82 0.00 0.18 Matches are distributed among these distances: 8 5 0.36 9 2 0.14 10 7 0.50 ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50 Consensus pattern (9 bp): ATTTTCGAG Left flanking sequence: Indices 5405217 -- 5405716 GAAAGATATTCGATACATGTGTAGTTGGTCTAAATTTATGGCTTGAAAACTATGTCAGTTTCAAT TACCAGAAACAATAATACAAACTCCATTTTCCAGCCCAACACCATCCAGCACTGATCTTGGACTT CTTCTCTTCTCAAACGTCCAGTAATTCCATCTCATTTATTCCAATTACCACCACAACCAGCACAA ATACTTCAACCATCACTTATTCCATTCCTTAACCCATCATTCCCATTATTATTCCCTCAGAATCC ACTTCTAGCTCAACCTGATTTAACGCAATATTTGAATTTTTTGATGTAAAATAAAATAAAATTGT GGAGGAATACATATTATTTACGTAGCACAGCCTCAAGTTCAAAATGAAAAAAAACAAACGGCGGG AAATTAGAAAAAAAGAATCGAAAATCAATTATTCCTATTATTTTTTGATAACATAACGGCTGCAT ATCAACAAGCGAAATGACTGAAATTCATAACGCCGAGGTGAGTTC Right flanking sequence: Indices 5405741 -- 5406240 CGTTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAGATAA ATGACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCAAGAT TTGTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAATTGAAGCCTGTTGAAGTTCATAAA CTTTACTTTTGTAATGAGCCAGTAAGAGAAACCACTTTATTCGAACTAGATTGAGGAAGTTTGAA TATTTCCACAATTCAATCATTACTAAAGTTCATTTTGTGTAGCTGTTATAATTTTCATGTGAAAC CGTAACTTTTACATTTCAGAACCGCCACCACAAAAATCGATATTCTGAAGGCAGATGACTTCCGA CCAATGAAACGTGGACAACATGCGTGGAAAGAAAACGATCAAAAAATGATTCACAGGATGCAGAA AGAGAAGAAGGCAGTTAGTGTGGAACAAGGAATTGTCGGTGCTGT Found at i:5405738 original size:10 final size:10 Alignment explanation
Indices: 5405723--5405742 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 5405713 GTTCATTTTC 5405723 AGATTTTCCG 1 AGATTTTCCG 5405733 AGATTTTCCG 1 AGATTTTCCG 5405743 TTCATTTTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40 Consensus pattern (10 bp): AGATTTTCCG Left flanking sequence: Indices 5405223 -- 5405722 TATTCGATACATGTGTAGTTGGTCTAAATTTATGGCTTGAAAACTATGTCAGTTTCAATTACCAG AAACAATAATACAAACTCCATTTTCCAGCCCAACACCATCCAGCACTGATCTTGGACTTCTTCTC TTCTCAAACGTCCAGTAATTCCATCTCATTTATTCCAATTACCACCACAACCAGCACAAATACTT CAACCATCACTTATTCCATTCCTTAACCCATCATTCCCATTATTATTCCCTCAGAATCCACTTCT AGCTCAACCTGATTTAACGCAATATTTGAATTTTTTGATGTAAAATAAAATAAAATTGTGGAGGA ATACATATTATTTACGTAGCACAGCCTCAAGTTCAAAATGAAAAAAAACAAACGGCGGGAAATTA GAAAAAAAGAATCGAAAATCAATTATTCCTATTATTTTTTGATAACATAACGGCTGCATATCAAC AAGCGAAATGACTGAAATTCATAACGCCGAGGTGAGTTCATTTTC Right flanking sequence: Indices 5405743 -- 5406242 TTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAGATAAAT GACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCAAGATTT GTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAATTGAAGCCTGTTGAAGTTCATAAACT TTACTTTTGTAATGAGCCAGTAAGAGAAACCACTTTATTCGAACTAGATTGAGGAAGTTTGAATA TTTCCACAATTCAATCATTACTAAAGTTCATTTTGTGTAGCTGTTATAATTTTCATGTGAAACCG TAACTTTTACATTTCAGAACCGCCACCACAAAAATCGATATTCTGAAGGCAGATGACTTCCGACC AATGAAACGTGGACAACATGCGTGGAAAGAAAACGATCAAAAAATGATTCACAGGATGCAGAAAG AGAAGAAGGCAGTTAGTGTGGAACAAGGAATTGTCGGTGCTGTAA Found at i:5406251 original size:7 final size:7 Alignment explanation
Indices: 5406239--5406253 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 5406229 TGTCGGTGCT 5406239 GTAAGAG 1 GTAAGAG 5406246 GTAAGAG 1 GTAAGAG 5406253 G 1 G 5406254 GGAAGTTTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.47, T:0.13 Consensus pattern (7 bp): GTAAGAG Left flanking sequence: Indices 5405739 -- 5406238 TCCGTTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAGAT AAATGACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCAAG ATTTGTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAATTGAAGCCTGTTGAAGTTCATA AACTTTACTTTTGTAATGAGCCAGTAAGAGAAACCACTTTATTCGAACTAGATTGAGGAAGTTTG AATATTTCCACAATTCAATCATTACTAAAGTTCATTTTGTGTAGCTGTTATAATTTTCATGTGAA ACCGTAACTTTTACATTTCAGAACCGCCACCACAAAAATCGATATTCTGAAGGCAGATGACTTCC GACCAATGAAACGTGGACAACATGCGTGGAAAGAAAACGATCAAAAAATGATTCACAGGATGCAG AAAGAGAAGAAGGCAGTTAGTGTGGAACAAGGAATTGTCGGTGCT Right flanking sequence: Indices 5406254 -- 5406753 GGAAGTTTTGAAGGTAGTGAAGATTAAATCGATTGAAACGTTTGAACTGTAGACATGAAACAGTA ACCGATTAACTTCAGAATCATTGGAAAGCTGGAGAACGTCTTCTTCATCAGAACGTCCAAGTGCC GAGGAAGGTTCAATGACCAAAAAAGTTTCGAATGAGGTGGTGAAGAGAGTTGCAGTCAAAAGAGT GAGTTGTTGTACATACATACTATTGCATTGAAACAGTTTTGCTTCTTCAAGATTAATCTAATAAA ACCTCATGAAACAGAAAATCAAATTGTTTTCAGGAGCTTCCATCTGCTGAATACCATTCAGTTCG TTACGATGAACGGAATTTGAGTCTTCGAAAAGCACAAGTTGAGCTGAAAACTGCACAAGAAGCTC CAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACTGTGTCACTCATCCACAC GATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCA Found at i:5407015 original size:9 final size:9 Alignment explanation
Indices: 5406997--5407018 Score: 37 Period size: 9 Copynumber: 2.6 Consensus size: 9 5406987 ATCACCATTG 5406997 GAAG-TGAA 1 GAAGATGAA 5407005 GAAGATGAA 1 GAAGATGAA 5407014 GAAGA 1 GAAGA 5407019 GAATTCAGGT Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 8 4 0.31 9 9 0.69 ACGTcount: A:0.55, C:0.00, G:0.36, T:0.09 Consensus pattern (9 bp): GAAGATGAA Left flanking sequence: Indices 5406497 -- 5406996 AAGATTAATCTAATAAAACCTCATGAAACAGAAAATCAAATTGTTTTCAGGAGCTTCCATCTGCT GAATACCATTCAGTTCGTTACGATGAACGGAATTTGAGTCTTCGAAAAGCACAAGTTGAGCTGAA AACTGCACAAGAAGCTCCAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACT GTGTCACTCATCCACACGATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCACAA GTGTCGGAAGATATTCCTCCACCAAAAAATAAGGAATCAGGAACACCCCCACTTAAAGAAAAAAC TCCTGAACCAATTCCAGAAGAACCGAAGAAAGTTGAGGAAGAAGTGAAGAAGCCAGAAGTACCAA AGAATGAAGAGCCGAAAATGGAGGAACCAGTGAAAGAAGAAGCACCAAAAGTAGAGGAAAAGAAG GAAGAGGTGAAAATGGTTGAGGACCCAAAAGTAGAATCACCATTG Right flanking sequence: Indices 5407019 -- 5407518 GAATTCAGGTAAAAAAGCACATTTTTTAAAGTTTTTACTGTTTCAATTATTCGTTATGAGTGTTT GAAATAAAATACAATTTTAGTAGATCTACATATCATATACGTAGGATGGTGAATTTTAAAAGTTT CATAGTTTCATAAATCATTACCAACCAATCTTACAGCAAAATTTCAGATAAATGTGAAACGTTAT CCGGATAGTGGAGAACTGACAATTCTCACCGAAAAGGATGGAATGGTTAGCTTCACGTGTTCAAC AAAGCATCGAATCAAGAAGAAATCGAAGAAGGATGAAGAATGATACTAGTTGATTTGATAACTGT GGAAATAAAGTTTTTGGGGCTGTAAACTTACTGATAACCAAATAGTTTTGGTGTTCAGCTAAGCT GTTTTTGTTTCAAACTTTTTTCTGAAAATGTAATTGAAAAATACTCGAGTCTATCTTTAAAAAAG TATAATGCTGTTCTATGCATATAGGTTCACATTTCAGCGAATGAA Found at i:5407157 original size:8 final size:8 Alignment explanation
Indices: 5407144--5407160 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 5407134 GAATTTTAAA 5407144 AGTTTCAT 1 AGTTTCAT 5407152 AGTTTCAT 1 AGTTTCAT 5407160 A 1 A 5407161 AATCATTACC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47 Consensus pattern (8 bp): AGTTTCAT Left flanking sequence: Indices 5406644 -- 5407143 CAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACTGTGTCACTCATCCACAC GATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCACAAGTGTCGGAAGATATTCC TCCACCAAAAAATAAGGAATCAGGAACACCCCCACTTAAAGAAAAAACTCCTGAACCAATTCCAG AAGAACCGAAGAAAGTTGAGGAAGAAGTGAAGAAGCCAGAAGTACCAAAGAATGAAGAGCCGAAA ATGGAGGAACCAGTGAAAGAAGAAGCACCAAAAGTAGAGGAAAAGAAGGAAGAGGTGAAAATGGT TGAGGACCCAAAAGTAGAATCACCATTGGAAGTGAAGAAGATGAAGAAGAGAATTCAGGTAAAAA AGCACATTTTTTAAAGTTTTTACTGTTTCAATTATTCGTTATGAGTGTTTGAAATAAAATACAAT TTTAGTAGATCTACATATCATATACGTAGGATGGTGAATTTTAAA Right flanking sequence: Indices 5407161 -- 5407660 AATCATTACCAACCAATCTTACAGCAAAATTTCAGATAAATGTGAAACGTTATCCGGATAGTGGA GAACTGACAATTCTCACCGAAAAGGATGGAATGGTTAGCTTCACGTGTTCAACAAAGCATCGAAT CAAGAAGAAATCGAAGAAGGATGAAGAATGATACTAGTTGATTTGATAACTGTGGAAATAAAGTT TTTGGGGCTGTAAACTTACTGATAACCAAATAGTTTTGGTGTTCAGCTAAGCTGTTTTTGTTTCA AACTTTTTTCTGAAAATGTAATTGAAAAATACTCGAGTCTATCTTTAAAAAAGTATAATGCTGTT CTATGCATATAGGTTCACATTTCAGCGAATGAACAATCATAATTTCGACCGAAAAATTACTGTTT CAAAGAGCACACTTGTAGAATCTTACTTTTTAATAACTACTGGAAATCACAAGGAAAGTATTTCA GCTCACAAATCGACTTCCGAATGTCATTCGACAGTAGACCTTTAG Found at i:5407318 original size:10 final size:10 Alignment explanation
Indices: 5407303--5407322 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 5407293 AGAAGAAATC 5407303 GAAGAAGGAT 1 GAAGAAGGAT * 5407313 GAAGAATGAT 1 GAAGAAGGAT 5407323 ACTAGTTGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15 Consensus pattern (10 bp): GAAGAAGGAT Left flanking sequence: Indices 5406803 -- 5407302 CCCCACTTAAAGAAAAAACTCCTGAACCAATTCCAGAAGAACCGAAGAAAGTTGAGGAAGAAGTG AAGAAGCCAGAAGTACCAAAGAATGAAGAGCCGAAAATGGAGGAACCAGTGAAAGAAGAAGCACC AAAAGTAGAGGAAAAGAAGGAAGAGGTGAAAATGGTTGAGGACCCAAAAGTAGAATCACCATTGG AAGTGAAGAAGATGAAGAAGAGAATTCAGGTAAAAAAGCACATTTTTTAAAGTTTTTACTGTTTC AATTATTCGTTATGAGTGTTTGAAATAAAATACAATTTTAGTAGATCTACATATCATATACGTAG GATGGTGAATTTTAAAAGTTTCATAGTTTCATAAATCATTACCAACCAATCTTACAGCAAAATTT CAGATAAATGTGAAACGTTATCCGGATAGTGGAGAACTGACAATTCTCACCGAAAAGGATGGAAT GGTTAGCTTCACGTGTTCAACAAAGCATCGAATCAAGAAGAAATC Right flanking sequence: Indices 5407323 -- 5407822 ACTAGTTGATTTGATAACTGTGGAAATAAAGTTTTTGGGGCTGTAAACTTACTGATAACCAAATA GTTTTGGTGTTCAGCTAAGCTGTTTTTGTTTCAAACTTTTTTCTGAAAATGTAATTGAAAAATAC TCGAGTCTATCTTTAAAAAAGTATAATGCTGTTCTATGCATATAGGTTCACATTTCAGCGAATGA ACAATCATAATTTCGACCGAAAAATTACTGTTTCAAAGAGCACACTTGTAGAATCTTACTTTTTA ATAACTACTGGAAATCACAAGGAAAGTATTTCAGCTCACAAATCGACTTCCGAATGTCATTCGAC AGTAGACCTTTAGACTAGTTCACTACTTGTGAGATCCAAGTTCAAACATTTTTTTGTACATTTTG AATAAGTTAAAGGTTATATTGGGACATTCAGCCACAAAATGAAACTCCTAAACTATGCTAAACTT GTCCCCTTACTGGAAATGAAAGCCCCAAACGTGAATCTGAGTAAT Found at i:5407321 original size:7 final size:7 Alignment explanation
Indices: 5407306--5407321 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 5407296 AGAAATCGAA * 5407306 GAAGGAT 1 GAAGAAT 5407313 GAAGAAT 1 GAAGAAT 5407320 GA 1 GA 5407322 TACTAGTTGA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.38, T:0.12 Consensus pattern (7 bp): GAAGAAT Left flanking sequence: Indices 5406806 -- 5407305 CACTTAAAGAAAAAACTCCTGAACCAATTCCAGAAGAACCGAAGAAAGTTGAGGAAGAAGTGAAG AAGCCAGAAGTACCAAAGAATGAAGAGCCGAAAATGGAGGAACCAGTGAAAGAAGAAGCACCAAA AGTAGAGGAAAAGAAGGAAGAGGTGAAAATGGTTGAGGACCCAAAAGTAGAATCACCATTGGAAG TGAAGAAGATGAAGAAGAGAATTCAGGTAAAAAAGCACATTTTTTAAAGTTTTTACTGTTTCAAT TATTCGTTATGAGTGTTTGAAATAAAATACAATTTTAGTAGATCTACATATCATATACGTAGGAT GGTGAATTTTAAAAGTTTCATAGTTTCATAAATCATTACCAACCAATCTTACAGCAAAATTTCAG ATAAATGTGAAACGTTATCCGGATAGTGGAGAACTGACAATTCTCACCGAAAAGGATGGAATGGT TAGCTTCACGTGTTCAACAAAGCATCGAATCAAGAAGAAATCGAA Right flanking sequence: Indices 5407322 -- 5407821 TACTAGTTGATTTGATAACTGTGGAAATAAAGTTTTTGGGGCTGTAAACTTACTGATAACCAAAT AGTTTTGGTGTTCAGCTAAGCTGTTTTTGTTTCAAACTTTTTTCTGAAAATGTAATTGAAAAATA CTCGAGTCTATCTTTAAAAAAGTATAATGCTGTTCTATGCATATAGGTTCACATTTCAGCGAATG AACAATCATAATTTCGACCGAAAAATTACTGTTTCAAAGAGCACACTTGTAGAATCTTACTTTTT AATAACTACTGGAAATCACAAGGAAAGTATTTCAGCTCACAAATCGACTTCCGAATGTCATTCGA CAGTAGACCTTTAGACTAGTTCACTACTTGTGAGATCCAAGTTCAAACATTTTTTTGTACATTTT GAATAAGTTAAAGGTTATATTGGGACATTCAGCCACAAAATGAAACTCCTAAACTATGCTAAACT TGTCCCCTTACTGGAAATGAAAGCCCCAAACGTGAATCTGAGTAA Found at i:5410264 original size:7 final size:7 Alignment explanation
Indices: 5410249--5410272 Score: 27 Period size: 7 Copynumber: 3.4 Consensus size: 7 5410239 TTGGTGAGAA * 5410249 TTTGGTT 1 TTTGATT 5410256 TTTGATT 1 TTTGATT ** 5410263 TTGAATT 1 TTTGATT 5410270 TTT 1 TTT 5410273 TGAACCATTG Statistics Matches: 13, Mismatches: 4, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.12, C:0.00, G:0.17, T:0.71 Consensus pattern (7 bp): TTTGATT Left flanking sequence: Indices 5409749 -- 5410248 ACATTTCCAGGCGGAACTGCTTCATTGCTTCCGCTAAGTGAGTTGGAGTGATTGTATTGAGTGGC TCGGCGTTCATTCGGTTCGATTTTCTTGACAAACGAGTCCATTTCACTCTCGATTTGGTTGCTTC TAAACAATAAACCTTTGCGATTGTAATTCCAACTTTTCTACCTACCTCTCAACAACCTTCGTCTG AAGCCTTTTCCTATTTCCCTCTGAAACCGGTGGAGTAGACGTGGGCTGTTTTGATGGAGAGAACG GGATGTGGTTGACAACCTTTTTCACAACTTCTTGGACGGATTTTCGTTTATTTTTGTCGTTTGAG CCCTTGCTGTTCGATGACGGCGGCGCTGGTACCGGTTTCCCTCGTCTAGTATTTTTGCTGAAATT TTCTGTTGACTTGAAGATATTAAAAAAAAAAAATTAAAATGTCCTTACTGTGAGCTTTCAGTGTC CGAATCGCTCTTCTTTACCTCGCGTCGCTTCTGATTTGGTGAGAA Right flanking sequence: Indices 5410273 -- 5410772 TGAACCATTGCTTGCTTCTGGTTTTTTTGTTACTTCTTGCTTCGCTTTCTGTAAAAAAGTTAGTT AGTTTTGAACATATTTTTGGCGAACACTGTCAATTTTCTGTCGCACTCTTTCAACTCTCTATCGC ACAATGATACTGACGCAAATTTTGAGCAACGCCACGGCTTTCTGTTACACAACAGCGCAACTTTC TGTCGCCGATTGGCAGCTTTCTGCCTAAAACGACCAAATTCTGTTGACACGTCAGCTAGTCGAGA GGTGTCGGAAACCCACTCTCAACTTTCTGTCGCACGTGGCCAGTTTATTTGCACACAGCGGCGCA GCTTTCTGACTCAAACTGACGCAAAATTCCGCAATATACTTGATGAACTCACTCTATTGAACATA TTCATAATGTGAATATTCTGATTCCGTGAAGTTTTGAACTCCAAAGATGGATGTCGTGATAGAAA AAGTAATGAATTGGTTCGAAAATACTTTTATGCGAAAAAATATAA Found at i:5410622 original size:10 final size:10 Alignment explanation
Indices: 5410603--5410622 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 5410593 GCGCAGCTTT * 5410603 CTGACTCAAA 1 CTGACGCAAA 5410613 CTGACGCAAA 1 CTGACGCAAA 5410623 ATTCCGCAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.30, G:0.15, T:0.15 Consensus pattern (10 bp): CTGACGCAAA Left flanking sequence: Indices 5410103 -- 5410602 TACCGGTTTCCCTCGTCTAGTATTTTTGCTGAAATTTTCTGTTGACTTGAAGATATTAAAAAAAA AAAATTAAAATGTCCTTACTGTGAGCTTTCAGTGTCCGAATCGCTCTTCTTTACCTCGCGTCGCT TCTGATTTGGTGAGAATTTGGTTTTTGATTTTGAATTTTTTGAACCATTGCTTGCTTCTGGTTTT TTTGTTACTTCTTGCTTCGCTTTCTGTAAAAAAGTTAGTTAGTTTTGAACATATTTTTGGCGAAC ACTGTCAATTTTCTGTCGCACTCTTTCAACTCTCTATCGCACAATGATACTGACGCAAATTTTGA GCAACGCCACGGCTTTCTGTTACACAACAGCGCAACTTTCTGTCGCCGATTGGCAGCTTTCTGCC TAAAACGACCAAATTCTGTTGACACGTCAGCTAGTCGAGAGGTGTCGGAAACCCACTCTCAACTT TCTGTCGCACGTGGCCAGTTTATTTGCACACAGCGGCGCAGCTTT Right flanking sequence: Indices 5410623 -- 5411122 ATTCCGCAATATACTTGATGAACTCACTCTATTGAACATATTCATAATGTGAATATTCTGATTCC GTGAAGTTTTGAACTCCAAAGATGGATGTCGTGATAGAAAAAGTAATGAATTGGTTCGAAAATAC TTTTATGCGAAAAAATATAATTAGTTGGCAACGTGGTTTTGATTTTGTTTTTTGAAAAAATAAGC TCACGGGATAAATAAAGTTTATTTCTAGTTTTTTTAAAATTTAACTTACGGCGCGCGGCGTCGGC TTGAGGCAGGCGTGAGGCCCGCATTTCGCAGCTGGGACACCTACTTTGAGGTACAAGCTGACACA AAAAATCTGCCTACGAGGCGGGCGTAGGTGAGCAGGCAGCCAGGTCGCCTGCTTTCCGTCGCATC TTTTCAATTTTTGTCGCTCAACAGGCACACTTCTGGCGGACTATACAAATTTTCTGTAGAACTTT GTATATCATACTGCCAAGTTTCTGACGCAAAAATCCGCAGTATAT Found at i:5411669 original size:7 final size:7 Alignment explanation
Indices: 5411657--5411674 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 5411647 TTGAGTGAAG 5411657 ACTACAA 1 ACTACAA 5411664 ACTACAA 1 ACTACAA 5411671 ACTA 1 ACTA 5411675 TAGACCTTCC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17 Consensus pattern (7 bp): ACTACAA Left flanking sequence: Indices 5411157 -- 5411656 GTGAATCCGTTTATTCCGGAAATTCCACCGAAACTGCAAGAACGAATGATAGAAAAAGTAATAAA CTTTTTTATTTCAAAGTTTTTTTTTTGAAAATTTGAATAAAGTTGACAACGTGGTTTTCATTTTA AAAATGGTCACGCAATACATTTTTTGTTGAAATTTCATTCATAAAACTTGAGTAAATAATATATC CTGTTATATGTCATGGTCCCCAGTATAATATTCGAAAAATCAGAAATTAAACAGAAAAATCGATA ACTCATAAAATTTTATTTATTTTTTAATGGAGTTCAATATTCTCTTCCTTCAAGCAAATGGGTCT CGAAGCGCCGCCGGCATCACCTGAGCCCCATCATCTTTGCACACCAACGCTGAAACGGTTTCCGT CGATTGTTGCTCGTCGCGCTGGAAATTGTAGACACGGCGGTTCTCGTGGTGGAAGATATTGATGG TATGGAACTTCCATGGAGTACCCAGTGCTGAAAATTTGAGTGAAG Right flanking sequence: Indices 5411675 -- 5412174 TAGACCTTCCTTGGCGCCGTCGTAATGAATCTCACAACATGTCAGTGGGCCGAGCGATGGTTGAT TGGCCATCACGAAGAGATCGGACTGAAAATAATCGATAATATAATCAAAAATCGATAATTTTAGC GGAAAGTCGATAAGTTAGTGAAAAGTCGATAGTCCGCCGGAATTTCCCAAAAAAATCGATATTCA ATAATTTGGCAAAAATCAATTCTCCTGCGGGAAAACTCACATGTCCTCTCTGAAATGGAGTTGGA TGTGTATGAGAATACCGTAATGCCTGCTTATCAGTCGCACGACCCTCATCATCTCGAATCAAAAT CGATATCTTTTCGCTGGGACCGTCTGGCGTTGAATCGGAAGAAGTTCGAATGAGGATCGTAAACG CCGCCGGACAATCGTCGTCATCGTATTTCGATCGAACCGATGATCCCATCTCTTTAATCGATTCC GCCGCCATTATCGATTAATTTGATTATCGATTTTTTGTCGATTTT Found at i:5412161 original size:7 final size:7 Alignment explanation
Indices: 5412136--5412161 Score: 27 Period size: 7 Copynumber: 3.4 Consensus size: 7 5412126 TTCCGCCGCC 5412136 ATTATCG 1 ATTATCG * 5412143 ATTAATTTG 1 ATT-A-TCG 5412152 ATTATCG 1 ATTATCG 5412159 ATT 1 ATT 5412162 TTTTGTCGAT Statistics Matches: 15, Mismatches: 2, Indels: 4 0.71 0.10 0.19 Matches are distributed among these distances: 7 8 0.53 8 2 0.13 9 5 0.33 ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50 Consensus pattern (7 bp): ATTATCG Left flanking sequence: Indices 5411636 -- 5412135 GTGCTGAAAATTTGAGTGAAGACTACAAACTACAAACTATAGACCTTCCTTGGCGCCGTCGTAAT GAATCTCACAACATGTCAGTGGGCCGAGCGATGGTTGATTGGCCATCACGAAGAGATCGGACTGA AAATAATCGATAATATAATCAAAAATCGATAATTTTAGCGGAAAGTCGATAAGTTAGTGAAAAGT CGATAGTCCGCCGGAATTTCCCAAAAAAATCGATATTCAATAATTTGGCAAAAATCAATTCTCCT GCGGGAAAACTCACATGTCCTCTCTGAAATGGAGTTGGATGTGTATGAGAATACCGTAATGCCTG CTTATCAGTCGCACGACCCTCATCATCTCGAATCAAAATCGATATCTTTTCGCTGGGACCGTCTG GCGTTGAATCGGAAGAAGTTCGAATGAGGATCGTAAACGCCGCCGGACAATCGTCGTCATCGTAT TTCGATCGAACCGATGATCCCATCTCTTTAATCGATTCCGCCGCC Right flanking sequence: Indices 5412162 -- 5412661 TTTTGTCGATTTTATTAAGTATAGTTGAAAATGATTTAAATCAGAGAAATTCGGCTTTTATAGGG GGAAAAACGTGAGTAAATTTTGTAAATGTTCATTGACGAACTTATTATTTATTTTCTCGTAAAAA TCTATAAAATTTTGTTTTTCGAGAAATGTTTTTAAAATATCAATATTTAAAATCAATTTTTTTTA CCTTTGTCGAAAAATCGATATTTCTTCTGAAAATCAATAATTATCGTTTTTTTTGTTTAAAAAAT CTCAACTTTTGCTCTCTTAAAAATCAGTAAAAGGCGAAATTTCCCCAACGATAACTCTTTTTGAT TTCGATGAAAAATCTGCATTTTTCAATTTCAAAAAATAACTTTGTTTTAAATCTGCCGAATAATA AACCAGAAATAAGTGGATCTGAAATTGCTTTCAGACAATTTTTTTCACAAATCAATGGTTCATAA AATGACTCAGAAGAGTTTTTTCAGGTCTAATCTTAATTTTAAAAA Found at i:5413081 original size:7 final size:7 Alignment explanation
Indices: 5413071--5413087 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 5413061 CAAAAAAAAA 5413071 AAATCAC 1 AAATCAC * 5413078 AAATGAC 1 AAATCAC 5413085 AAA 1 AAA 5413088 CTTTTGAAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.65, C:0.18, G:0.06, T:0.12 Consensus pattern (7 bp): AAATCAC Left flanking sequence: Indices 5412571 -- 5413070 TGAAATTGCTTTCAGACAATTTTTTTCACAAATCAATGGTTCATAAAATGACTCAGAAGAGTTTT TTCAGGTCTAATCTTAATTTTAAAAATGTTGAAAAATGTTCTGACCGAAAATTTCAAATTTTTTC CGAAACTTTTCTTTTTTGAAAACATCGGATGGAGCAAAATATTTTGTAGTGACCTACTTAGAAGG TGTTCTTTCAAATAAAACAAGTCTCATTTCAAAGCCCAGGAATAAGTTGAAATTAAAAATACTTT AATTGCGTTTCAAACAAAATTACAATGCACAATTGAAAATATTCCACTCAACATCGGTTCAATTC TGCACACCACAACGCATCGACCACTTGCTGATCCACAAATTTCGCGAGTTCTGCGATTTTCTTAT CAGCCATCTGATAACATTGATCAGATGTTGTTCCTTTGGCAAGAGAAGCACAAGCTGTATTGGCA AATGAGGTTATGTCAGTCTAAAGAAATTATGAACTCAAAAAAAAA Right flanking sequence: Indices 5413088 -- 5413587 CTTTTGAAGTGACCGCATAATTCTTGGCATTTTCCAGCATTCTCTCACAAAACGCACATGTTAGA CGTTTCTCGTCCTGAAAATGAGAATAATAAAATTGAATCTTTCATGTAGACTCAAAAACGTTTGC CTGCCTGCATGCTAGGCGACCTACTCCTGCCTCGTGCCTACACTGCCTCCTACAGTCATGGAACA CTCTGTCAAAGGTACATAAGCAGGCATCTGCAGGGAAACCTGAAATAAAAAAATGTGACACTTAC AATTTCTTCTTTTTCGGGAACTTTTTCTCTTGAAGATTCGACAATTGTATTCCGAGACATGTATT TTGAACGAAGCGGTGGTGGAATAATTATCTGAAACGAAATTTTTTAATACATTAGTATCTTTTCC AGGTTTATGTTTTTAATATATCTATTTCATTGCTGAACTAAAAAAAATCTGAGGACTGAGGAATG GTAAGAAATTCCAATTATTTATAATTTTTGAATATATTGTTAACC Found at