TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:631687 original size:8 final size:8 Alignment explanation
Indices: 631676--631705 Score: 39 Period size: 8 Copynumber: 3.8 Consensus size: 8 631666 GAAAATATAA * 631676 AATTTTTT 1 AATTTTTC 631684 AATTTTTC 1 AATTTTTC * * 631692 GAATTTTC 1 AATTTTTC 631700 AATTTT 1 AATTTT 631706 AGAATACTCC Statistics Matches: 17, Mismatches: 5, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.27, C:0.07, G:0.03, T:0.63 Consensus pattern (8 bp): AATTTTTC Left flanking sequence: Indices 631176 -- 631675 AAAAAATTTGTTTCTAAAAAGTCCCTGAACATTCTATGCTATTTCTAGAGAGTTCCAGAATATTC AAAAATTTATATAACTTTCCAGGAATTTCTAGAAATGCTCAGGAAGATCCAGAGTTCTCAGAACA TGTCAGAATTTCCTGGCATTTTCCAATATGTACCATTTTTCAGAAAATTCCAAAAGTTGTTTCAC GTTTCCAAAAACATTTAGTGTTTTCTAGAGCGTCGCAGAATACTTGAAAGTGATCTCAAATTTTC CAAAAAAGGTTCCAGGACGTTCGAGGATTTTTTGAACCATTCTTGAAAATTCTAAAAAACTCTCA ACATTTTTTCGGAAATTGCAATTCAACAATTCTGGTCATTTTTTTTTTTGAAAAATAAATTAAAG GAAAAAATCTCCATTTTTTTCGATTTTTCAACTTTTCAATTCAACAAAATTTCAAAAAAAAATTA CCTAAAAAATTTGACCGAATTTTCTTTAAAAAATCGAAAATATAA Right flanking sequence: Indices 631706 -- 632205 AGAATACTCCAGATTTCATCACAATTTTTCTCGCATTTTCTTGAGAGCATCAGAATTGTTCTACT CTCTGCAAAACTTTTCTCGATTTCAGACTAATTGCTCCGGACGGGTCCTACACGGATTTGAGTGA TCATGGTGCTCAATTCGACGACGAATTCACACAAATCACCGAGTCTGTCATGGACAAGGAAACGT GTCTGAAACTGCTCTACGACCCGCTGCGGTCGTGTTTGAACGAACTTGGATCCGCGTTAGAGCAC TCTAGAATGACAGACACCGAGTTTTGTGCTCTTTTTGCAATATTGTTATTCAATACAGGTTAGTG CTGTCTGGAAGAGAGGTGTCAATTGAAAGTGCAATTTCAGCCGCTGATAACTTATCGGACGCGAG TCGTAACGCCGTAGTGATGGCCAGAAATCGGGTGATGAAGGATTGGTTCGAGTTTTATGCGAAAC AGGGGATAGACCCACATGAGGTAGAGAAGCATCCTTCATTTAAAA Found at i:631689 original size:7 final size:7 Alignment explanation
Indices: 631679--631705 Score: 29 Period size: 7 Copynumber: 3.6 Consensus size: 7 631669 AATATAAAAT 631679 TTTTTAA 1 TTTTTAA 631686 TTTTTCGAA 1 TTTTT--AA * 631695 TTTTCAA 1 TTTTTAA 631702 TTTT 1 TTTT 631706 AGAATACTCC Statistics Matches: 17, Mismatches: 1, Indels: 4 0.77 0.05 0.18 Matches are distributed among these distances: 7 11 0.65 9 6 0.35 ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67 Consensus pattern (7 bp): TTTTTAA Left flanking sequence: Indices 631179 -- 631678 AAATTTGTTTCTAAAAAGTCCCTGAACATTCTATGCTATTTCTAGAGAGTTCCAGAATATTCAAA AATTTATATAACTTTCCAGGAATTTCTAGAAATGCTCAGGAAGATCCAGAGTTCTCAGAACATGT CAGAATTTCCTGGCATTTTCCAATATGTACCATTTTTCAGAAAATTCCAAAAGTTGTTTCACGTT TCCAAAAACATTTAGTGTTTTCTAGAGCGTCGCAGAATACTTGAAAGTGATCTCAAATTTTCCAA AAAAGGTTCCAGGACGTTCGAGGATTTTTTGAACCATTCTTGAAAATTCTAAAAAACTCTCAACA TTTTTTCGGAAATTGCAATTCAACAATTCTGGTCATTTTTTTTTTTGAAAAATAAATTAAAGGAA AAAATCTCCATTTTTTTCGATTTTTCAACTTTTCAATTCAACAAAATTTCAAAAAAAAATTACCT AAAAAATTTGACCGAATTTTCTTTAAAAAATCGAAAATATAAAAT Right flanking sequence: Indices 631706 -- 632205 AGAATACTCCAGATTTCATCACAATTTTTCTCGCATTTTCTTGAGAGCATCAGAATTGTTCTACT CTCTGCAAAACTTTTCTCGATTTCAGACTAATTGCTCCGGACGGGTCCTACACGGATTTGAGTGA TCATGGTGCTCAATTCGACGACGAATTCACACAAATCACCGAGTCTGTCATGGACAAGGAAACGT GTCTGAAACTGCTCTACGACCCGCTGCGGTCGTGTTTGAACGAACTTGGATCCGCGTTAGAGCAC TCTAGAATGACAGACACCGAGTTTTGTGCTCTTTTTGCAATATTGTTATTCAATACAGGTTAGTG CTGTCTGGAAGAGAGGTGTCAATTGAAAGTGCAATTTCAGCCGCTGATAACTTATCGGACGCGAG TCGTAACGCCGTAGTGATGGCCAGAAATCGGGTGATGAAGGATTGGTTCGAGTTTTATGCGAAAC AGGGGATAGACCCACATGAGGTAGAGAAGCATCCTTCATTTAAAA Found at i:631696 original size:9 final size:8 Alignment explanation
Indices: 631676--631710 Score: 33 Period size: 8 Copynumber: 4.4 Consensus size: 8 631666 GAAAATATAA * 631676 AATTTTTT 1 AATTTTTG 631684 AATTTTTCG 1 AATTTTT-G * 631693 AA-TTTTC 1 AATTTTTG * 631700 AATTTTAG 1 AATTTTTG 631708 AAT 1 AAT 631711 ACTCCAGATT Statistics Matches: 21, Mismatches: 4, Indels: 4 0.72 0.14 0.14 Matches are distributed among these distances: 7 2 0.10 8 17 0.81 9 2 0.10 ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57 Consensus pattern (8 bp): AATTTTTG Left flanking sequence: Indices 631176 -- 631675 AAAAAATTTGTTTCTAAAAAGTCCCTGAACATTCTATGCTATTTCTAGAGAGTTCCAGAATATTC AAAAATTTATATAACTTTCCAGGAATTTCTAGAAATGCTCAGGAAGATCCAGAGTTCTCAGAACA TGTCAGAATTTCCTGGCATTTTCCAATATGTACCATTTTTCAGAAAATTCCAAAAGTTGTTTCAC GTTTCCAAAAACATTTAGTGTTTTCTAGAGCGTCGCAGAATACTTGAAAGTGATCTCAAATTTTC CAAAAAAGGTTCCAGGACGTTCGAGGATTTTTTGAACCATTCTTGAAAATTCTAAAAAACTCTCA ACATTTTTTCGGAAATTGCAATTCAACAATTCTGGTCATTTTTTTTTTTGAAAAATAAATTAAAG GAAAAAATCTCCATTTTTTTCGATTTTTCAACTTTTCAATTCAACAAAATTTCAAAAAAAAATTA CCTAAAAAATTTGACCGAATTTTCTTTAAAAAATCGAAAATATAA Right flanking sequence: Indices 631711 -- 632210 ACTCCAGATTTCATCACAATTTTTCTCGCATTTTCTTGAGAGCATCAGAATTGTTCTACTCTCTG CAAAACTTTTCTCGATTTCAGACTAATTGCTCCGGACGGGTCCTACACGGATTTGAGTGATCATG GTGCTCAATTCGACGACGAATTCACACAAATCACCGAGTCTGTCATGGACAAGGAAACGTGTCTG AAACTGCTCTACGACCCGCTGCGGTCGTGTTTGAACGAACTTGGATCCGCGTTAGAGCACTCTAG AATGACAGACACCGAGTTTTGTGCTCTTTTTGCAATATTGTTATTCAATACAGGTTAGTGCTGTC TGGAAGAGAGGTGTCAATTGAAAGTGCAATTTCAGCCGCTGATAACTTATCGGACGCGAGTCGTA ACGCCGTAGTGATGGCCAGAAATCGGGTGATGAAGGATTGGTTCGAGTTTTATGCGAAACAGGGG ATAGACCCACATGAGGTAGAGAAGCATCCTTCATTTAAAAATTTC Found at i:633506 original size:10 final size:10 Alignment explanation
Indices: 633488--633508 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 633478 GGCTTTCTGG * 633488 AAATTTTGAA 1 AAATCTTGAA 633498 AAATCTTGAA 1 AAATCTTGAA 633508 A 1 A 633509 CGATTTCGAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33 Consensus pattern (10 bp): AAATCTTGAA Left flanking sequence: Indices 632988 -- 633487 TTTTTAGCTGTCTCGTTATGAAAATCAGGTAGTTTCAGCATTTAAGCAGCGTATGTATCATGTTT GGGAAAAAGTTTAGGTTTTGTATTCCCGTAATCCATCATATTACATTGAGCACTTTCACCGCTAC TTACCGACTCAATACAGACTTTTTTCACTTGGAAATTGTTTTAGCATCTGCAAAAAATATTTATT TATTAGTTTTAATAAGAAAAAACGGGAAAAATTGGTGCAAAACAAAAGAAAACACGCGGAAAACA AAGCAACATAAATGGCCGCTGAAACTTGTCGGCCCCTCGGCCATGGTCTAGAAACCACTTTTCCT CGTCCCTCGTGAGGAAAAAGTTGCAGTGTACACCACCTTTAAATGTGTTAGAACTTTCTAGAGAT TTCGAAAATATTTGAAAAGTTTCTGGGATTTTTGGTAAGTTCTACAAAAACTGAACTATTCTGGA CCACCTATTTGAAAATTTCAACAACAATCTAAAAAGGCTTTCTGG Right flanking sequence: Indices 633509 -- 634008 CGATTTCGATCAAAATTTCTGTAAGATTTTCGATCATTCATTGACCATTCATCCCTAGAAAAGTC AAAATATTTCTGGAAAAATCTAGATACTTCTCTTATTCTGAAACAGCGGAGAGGCCGCTGAGCAC CTAGATGTTTTCTCTGCGCTCTCCTCCTCACCTACGCTCTCTCATCCTCTTCTAGTTTCCAGGCT GGTCTTCTCGTGGGCAACACGTTGCTTCTTCTGACAGCCGTCCGCAATGCGATGGCAGTTCACCG TGAAAATTTTCACGTGATTCGTGTGTTCAATGTGATGGAATATGATAAATTAATTGATGATCTCG CGTTCACGTAACCCCAAAATGTCCTGCAGTTGTACATAGAATACCCAGCCCGCTAGAAAATACTT TTCGCTAGAAATTGATTCGCTAGTTTTAAAGTTTCAAAAGAAATTGTAATAAATATTTATAATTT ATGTTTTACTTTTCGTTTTTTTTTTTGCGTATTCTGAACTTTATA Found at i:634344 original size:9 final size:9 Alignment explanation
Indices: 634330--634353 Score: 34 Period size: 9 Copynumber: 2.7 Consensus size: 9 634320 AACTTATTGA 634330 AAGTTTCGG 1 AAGTTTCGG * 634339 AAGTTTCTG 1 AAGTTTCGG * 634348 AAATTT 1 AAGTTT 634354 TCTGGCGGAT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42 Consensus pattern (9 bp): AAGTTTCGG Left flanking sequence: Indices 633830 -- 634329 CTCGCGTTCACGTAACCCCAAAATGTCCTGCAGTTGTACATAGAATACCCAGCCCGCTAGAAAAT ACTTTTCGCTAGAAATTGATTCGCTAGTTTTAAAGTTTCAAAAGAAATTGTAATAAATATTTATA ATTTATGTTTTACTTTTCGTTTTTTTTTTTGCGTATTCTGAACTTTATACTTTTGCAAAAAATGT TGCAGAAATGCAAAAAGCTACAAGTAGTTTACCATGGCAGCCAATTTTTGGAAACAAAGACAGCT AATTTTCAGCACACCATTTTTCTATTGGAACATCATATGTACAGGCATCATGTAGGCTTCCTACG CCTTTCTCGTGCCTTCCATCAGCCTGCGTTTTTTTACATGAGTTGCGAACCCCGTATAATTTCAG GCGCTTTTGGGAAATTTCAGAAAGCTTCAGGAATCTCTTGAATTTTTTGAATCTTCTGGAAAGTT CAAAAATTTCCTGAAAAATGTTTAAAGTCTTTGGAAACTTATTGA Right flanking sequence: Indices 634354 -- 634853 TCTGGCGGATTTGAAAAACTTTGAAAACTTTTCAAATTTTATTGAAATTTCAAAGAACTACTGGG AACTTTTTGAATTTTATTTTTGATATCGAGGCTTTTCAAGAACGTTCAGGAAACTCTATAAAAGT TCTGGAAATATTGGGAAGATTTCTGGAAACTTCGAAACATTTCTGAAAAGTTTTGCAAGTTTTGA AAAGTTCTTGAAGAATGTTTAAAAAATCCTGGAAAGTTCTAGAAATTTTTGGAAGCTTCTAGGCA CTTTTTAGGAATTCGGAAACTTCCAGAAACTTTCTCAAGGCTTCTGGAGACTTCTGAAAACCTTT GGAAACATTTGCAAACTCTCAAGAACTTTCTGAAAGCTCGACGAATTTCTGAAATTTTCCGGAAA GTCTTAACCTCGTTTTTTTTCTTTTCTCTTGCAAAATTCTGTGTCAAAATTCAAAGTCAAACGAC GCAATAACCTCTAATTTTGAATTATCCTCCAATTGACGTCACACC Found at i:634357 original size:10 final size:10 Alignment explanation
Indices: 634327--634357 Score: 41 Period size: 10 Copynumber: 3.2 Consensus size: 10 634317 GGAAACTTAT 634327 TGAAAGTTTC 1 TGAAAGTTTC * 634337 -GGAAGTTTC 1 TGAAAGTTTC * 634346 TGAAATTTTC 1 TGAAAGTTTC 634356 TG 1 TG 634358 GCGGATTTGA Statistics Matches: 17, Mismatches: 3, Indels: 2 0.77 0.14 0.09 Matches are distributed among these distances: 9 8 0.47 10 9 0.53 ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42 Consensus pattern (10 bp): TGAAAGTTTC Left flanking sequence: Indices 633827 -- 634326 GATCTCGCGTTCACGTAACCCCAAAATGTCCTGCAGTTGTACATAGAATACCCAGCCCGCTAGAA AATACTTTTCGCTAGAAATTGATTCGCTAGTTTTAAAGTTTCAAAAGAAATTGTAATAAATATTT ATAATTTATGTTTTACTTTTCGTTTTTTTTTTTGCGTATTCTGAACTTTATACTTTTGCAAAAAA TGTTGCAGAAATGCAAAAAGCTACAAGTAGTTTACCATGGCAGCCAATTTTTGGAAACAAAGACA GCTAATTTTCAGCACACCATTTTTCTATTGGAACATCATATGTACAGGCATCATGTAGGCTTCCT ACGCCTTTCTCGTGCCTTCCATCAGCCTGCGTTTTTTTACATGAGTTGCGAACCCCGTATAATTT CAGGCGCTTTTGGGAAATTTCAGAAAGCTTCAGGAATCTCTTGAATTTTTTGAATCTTCTGGAAA GTTCAAAAATTTCCTGAAAAATGTTTAAAGTCTTTGGAAACTTAT Right flanking sequence: Indices 634358 -- 634857 GCGGATTTGAAAAACTTTGAAAACTTTTCAAATTTTATTGAAATTTCAAAGAACTACTGGGAACT TTTTGAATTTTATTTTTGATATCGAGGCTTTTCAAGAACGTTCAGGAAACTCTATAAAAGTTCTG GAAATATTGGGAAGATTTCTGGAAACTTCGAAACATTTCTGAAAAGTTTTGCAAGTTTTGAAAAG TTCTTGAAGAATGTTTAAAAAATCCTGGAAAGTTCTAGAAATTTTTGGAAGCTTCTAGGCACTTT TTAGGAATTCGGAAACTTCCAGAAACTTTCTCAAGGCTTCTGGAGACTTCTGAAAACCTTTGGAA ACATTTGCAAACTCTCAAGAACTTTCTGAAAGCTCGACGAATTTCTGAAATTTTCCGGAAAGTCT TAACCTCGTTTTTTTTCTTTTCTCTTGCAAAATTCTGTGTCAAAATTCAAAGTCAAACGACGCAA TAACCTCTAATTTTGAATTATCCTCCAATTGACGTCACACCCCTC Found at i:634382 original size:9 final size:10 Alignment explanation
Indices: 634363--634384 Score: 37 Period size: 9 Copynumber: 2.3 Consensus size: 10 634353 TTCTGGCGGA 634363 TTTGAAAAAC 1 TTTGAAAAAC 634373 TTTG-AAAAC 1 TTTGAAAAAC 634382 TTT 1 TTT 634385 TCAAATTTTA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 8 0.67 10 4 0.33 ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41 Consensus pattern (10 bp): TTTGAAAAAC Left flanking sequence: Indices 633863 -- 634362 TTGTACATAGAATACCCAGCCCGCTAGAAAATACTTTTCGCTAGAAATTGATTCGCTAGTTTTAA AGTTTCAAAAGAAATTGTAATAAATATTTATAATTTATGTTTTACTTTTCGTTTTTTTTTTTGCG TATTCTGAACTTTATACTTTTGCAAAAAATGTTGCAGAAATGCAAAAAGCTACAAGTAGTTTACC ATGGCAGCCAATTTTTGGAAACAAAGACAGCTAATTTTCAGCACACCATTTTTCTATTGGAACAT CATATGTACAGGCATCATGTAGGCTTCCTACGCCTTTCTCGTGCCTTCCATCAGCCTGCGTTTTT TTACATGAGTTGCGAACCCCGTATAATTTCAGGCGCTTTTGGGAAATTTCAGAAAGCTTCAGGAA TCTCTTGAATTTTTTGAATCTTCTGGAAAGTTCAAAAATTTCCTGAAAAATGTTTAAAGTCTTTG GAAACTTATTGAAAGTTTCGGAAGTTTCTGAAATTTTCTGGCGGA Right flanking sequence: Indices 634385 -- 634884 TCAAATTTTATTGAAATTTCAAAGAACTACTGGGAACTTTTTGAATTTTATTTTTGATATCGAGG CTTTTCAAGAACGTTCAGGAAACTCTATAAAAGTTCTGGAAATATTGGGAAGATTTCTGGAAACT TCGAAACATTTCTGAAAAGTTTTGCAAGTTTTGAAAAGTTCTTGAAGAATGTTTAAAAAATCCTG GAAAGTTCTAGAAATTTTTGGAAGCTTCTAGGCACTTTTTAGGAATTCGGAAACTTCCAGAAACT TTCTCAAGGCTTCTGGAGACTTCTGAAAACCTTTGGAAACATTTGCAAACTCTCAAGAACTTTCT GAAAGCTCGACGAATTTCTGAAATTTTCCGGAAAGTCTTAACCTCGTTTTTTTTCTTTTCTCTTG CAAAATTCTGTGTCAAAATTCAAAGTCAAACGACGCAATAACCTCTAATTTTGAATTATCCTCCA ATTGACGTCACACCCCTCCCCGTGTCTCCCGTATTCTCACCGTAT Found at i:634684 original size:10 final size:10 Alignment explanation
Indices: 634671--634694 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 634661 AGACTTCTGA * * 634671 AAACCTTTGG 1 AAACATTTGC 634681 AAACATTTGC 1 AAACATTTGC 634691 AAAC 1 AAAC 634695 TCTCAAGAAC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25 Consensus pattern (10 bp): AAACATTTGC Left flanking sequence: Indices 634171 -- 634670 CATCAGCCTGCGTTTTTTTACATGAGTTGCGAACCCCGTATAATTTCAGGCGCTTTTGGGAAATT TCAGAAAGCTTCAGGAATCTCTTGAATTTTTTGAATCTTCTGGAAAGTTCAAAAATTTCCTGAAA AATGTTTAAAGTCTTTGGAAACTTATTGAAAGTTTCGGAAGTTTCTGAAATTTTCTGGCGGATTT GAAAAACTTTGAAAACTTTTCAAATTTTATTGAAATTTCAAAGAACTACTGGGAACTTTTTGAAT TTTATTTTTGATATCGAGGCTTTTCAAGAACGTTCAGGAAACTCTATAAAAGTTCTGGAAATATT GGGAAGATTTCTGGAAACTTCGAAACATTTCTGAAAAGTTTTGCAAGTTTTGAAAAGTTCTTGAA GAATGTTTAAAAAATCCTGGAAAGTTCTAGAAATTTTTGGAAGCTTCTAGGCACTTTTTAGGAAT TCGGAAACTTCCAGAAACTTTCTCAAGGCTTCTGGAGACTTCTGA Right flanking sequence: Indices 634695 -- 635194 TCTCAAGAACTTTCTGAAAGCTCGACGAATTTCTGAAATTTTCCGGAAAGTCTTAACCTCGTTTT TTTTCTTTTCTCTTGCAAAATTCTGTGTCAAAATTCAAAGTCAAACGACGCAATAACCTCTAATT TTGAATTATCCTCCAATTGACGTCACACCCCTCCCCGTGTCTCCCGTATTCTCACCGTATTTCCA CATGGCCGCAAAAAAAAAATGCATAATTGAGCACTCAGTGAAAATGTGTGCTCCGTCTGTTTCTG TTTTGCTATTCAAGAGCTTCGAACACTTTTAGAGTAGAAAACAAAAAAGAACAATTTTTTGTTGC AAAAAAAAAACAAAAAAACAACAAAATAAGTGGGTATTGTTGTTTGTTTGAACGAAGCGAACCGA TTTTTCTCCACACTAATTCCTTCCGCTTTTGTTGTTTTATTTTTGAGTTTTCTTTTCAGAATTCA TCGTTCTATACAACTTTCTTCCCTTTTCTCAAGAATCTCGAATAT Found at i:634773 original size:7 final size:7 Alignment explanation
Indices: 634758--634773 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 634748 TAACCTCGTT * 634758 TTTTTTC 1 TTTTCTC 634765 TTTTCTC 1 TTTTCTC 634772 TT 1 TT 634774 GCAAAATTCT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81 Consensus pattern (7 bp): TTTTCTC Left flanking sequence: Indices 634258 -- 634757 TGAATTTTTTGAATCTTCTGGAAAGTTCAAAAATTTCCTGAAAAATGTTTAAAGTCTTTGGAAAC TTATTGAAAGTTTCGGAAGTTTCTGAAATTTTCTGGCGGATTTGAAAAACTTTGAAAACTTTTCA AATTTTATTGAAATTTCAAAGAACTACTGGGAACTTTTTGAATTTTATTTTTGATATCGAGGCTT TTCAAGAACGTTCAGGAAACTCTATAAAAGTTCTGGAAATATTGGGAAGATTTCTGGAAACTTCG AAACATTTCTGAAAAGTTTTGCAAGTTTTGAAAAGTTCTTGAAGAATGTTTAAAAAATCCTGGAA AGTTCTAGAAATTTTTGGAAGCTTCTAGGCACTTTTTAGGAATTCGGAAACTTCCAGAAACTTTC TCAAGGCTTCTGGAGACTTCTGAAAACCTTTGGAAACATTTGCAAACTCTCAAGAACTTTCTGAA AGCTCGACGAATTTCTGAAATTTTCCGGAAAGTCTTAACCTCGTT Right flanking sequence: Indices 634774 -- 635273 GCAAAATTCTGTGTCAAAATTCAAAGTCAAACGACGCAATAACCTCTAATTTTGAATTATCCTCC AATTGACGTCACACCCCTCCCCGTGTCTCCCGTATTCTCACCGTATTTCCACATGGCCGCAAAAA AAAAATGCATAATTGAGCACTCAGTGAAAATGTGTGCTCCGTCTGTTTCTGTTTTGCTATTCAAG AGCTTCGAACACTTTTAGAGTAGAAAACAAAAAAGAACAATTTTTTGTTGCAAAAAAAAAACAAA AAAACAACAAAATAAGTGGGTATTGTTGTTTGTTTGAACGAAGCGAACCGATTTTTCTCCACACT AATTCCTTCCGCTTTTGTTGTTTTATTTTTGAGTTTTCTTTTCAGAATTCATCGTTCTATACAAC TTTCTTCCCTTTTCTCAAGAATCTCGAATATCAAAAAAAATTCAATTATTCCCAAGTGGCTTGTG ACCTGTTTGTTGGCATCAACACAAAAAAAGAGGTCGTCGGTTTTT Found at i:635036 original size:8 final size:8 Alignment explanation
Indices: 635023--635045 Score: 39 Period size: 8 Copynumber: 2.9 Consensus size: 8 635013 TTGTTGCAAA 635023 AAAAAAAC 1 AAAAAAAC 635031 AAAAAAAC 1 AAAAAAAC * 635039 AACAAAA 1 AAAAAAA 635046 TAAGTGGGTA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00 Consensus pattern (8 bp): AAAAAAAC Left flanking sequence: Indices 634523 -- 635022 TTTCTGAAAAGTTTTGCAAGTTTTGAAAAGTTCTTGAAGAATGTTTAAAAAATCCTGGAAAGTTC TAGAAATTTTTGGAAGCTTCTAGGCACTTTTTAGGAATTCGGAAACTTCCAGAAACTTTCTCAAG GCTTCTGGAGACTTCTGAAAACCTTTGGAAACATTTGCAAACTCTCAAGAACTTTCTGAAAGCTC GACGAATTTCTGAAATTTTCCGGAAAGTCTTAACCTCGTTTTTTTTCTTTTCTCTTGCAAAATTC TGTGTCAAAATTCAAAGTCAAACGACGCAATAACCTCTAATTTTGAATTATCCTCCAATTGACGT CACACCCCTCCCCGTGTCTCCCGTATTCTCACCGTATTTCCACATGGCCGCAAAAAAAAAATGCA TAATTGAGCACTCAGTGAAAATGTGTGCTCCGTCTGTTTCTGTTTTGCTATTCAAGAGCTTCGAA CACTTTTAGAGTAGAAAACAAAAAAGAACAATTTTTTGTTGCAAA Right flanking sequence: Indices 635046 -- 635545 TAAGTGGGTATTGTTGTTTGTTTGAACGAAGCGAACCGATTTTTCTCCACACTAATTCCTTCCGC TTTTGTTGTTTTATTTTTGAGTTTTCTTTTCAGAATTCATCGTTCTATACAACTTTCTTCCCTTT TCTCAAGAATCTCGAATATCAAAAAAAATTCAATTATTCCCAAGTGGCTTGTGACCTGTTTGTTG GCATCAACACAAAAAAAGAGGTCGTCGGTTTTTGAGATTTTCCAAGGTTTTCAAGGTATACTGTA GATGATAATCACATCGTTTACAAAATCAGGCAGGTATGTAGGCAAGTAGGCAGGCCTAAGGTCGT GCCTGCCTTTCATAAAAGCTTTACAGATATGATGTAGTCATATTTGATCTCCGATTTAAAAGTCT CTTTATTGTGTTTTTGTGTCCTCAGAACGCCTTTTCAATTATGATTTCATTTTATTTTTTTTGTG TATTTGTTCTGCAAAAATGACACATTTAAAATTCCAGTCAAGTCG Found at i:635295 original size:9 final size:9 Alignment explanation
Indices: 635267--635297 Score: 32 Period size: 9 Copynumber: 3.3 Consensus size: 9 635257 AGAGGTCGTC ** 635267 GGTTTTTGA 1 GGTTTTCAA * 635276 GATTTTCCAA 1 GGTTTT-CAA 635286 GGTTTTCAA 1 GGTTTTCAA 635295 GGT 1 GGT 635298 ATACTGTAGA Statistics Matches: 17, Mismatches: 4, Indels: 2 0.74 0.17 0.09 Matches are distributed among these distances: 9 11 0.65 10 6 0.35 ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45 Consensus pattern (9 bp): GGTTTTCAA Left flanking sequence: Indices 634767 -- 635266 TTCTCTTGCAAAATTCTGTGTCAAAATTCAAAGTCAAACGACGCAATAACCTCTAATTTTGAATT ATCCTCCAATTGACGTCACACCCCTCCCCGTGTCTCCCGTATTCTCACCGTATTTCCACATGGCC GCAAAAAAAAAATGCATAATTGAGCACTCAGTGAAAATGTGTGCTCCGTCTGTTTCTGTTTTGCT ATTCAAGAGCTTCGAACACTTTTAGAGTAGAAAACAAAAAAGAACAATTTTTTGTTGCAAAAAAA AAACAAAAAAACAACAAAATAAGTGGGTATTGTTGTTTGTTTGAACGAAGCGAACCGATTTTTCT CCACACTAATTCCTTCCGCTTTTGTTGTTTTATTTTTGAGTTTTCTTTTCAGAATTCATCGTTCT ATACAACTTTCTTCCCTTTTCTCAAGAATCTCGAATATCAAAAAAAATTCAATTATTCCCAAGTG GCTTGTGACCTGTTTGTTGGCATCAACACAAAAAAAGAGGTCGTC Right flanking sequence: Indices 635298 -- 635797 ATACTGTAGATGATAATCACATCGTTTACAAAATCAGGCAGGTATGTAGGCAAGTAGGCAGGCCT AAGGTCGTGCCTGCCTTTCATAAAAGCTTTACAGATATGATGTAGTCATATTTGATCTCCGATTT AAAAGTCTCTTTATTGTGTTTTTGTGTCCTCAGAACGCCTTTTCAATTATGATTTCATTTTATTT TTTTTGTGTATTTGTTCTGCAAAAATGACACATTTAAAATTCCAGTCAAGTCGTTCGGAAAATAA CAAAAACCATTTCCAAAACTCCACGTCACTTGCTTTTATTCCTTGATTCTCACGCTTTTCACTAA TGATTTTCCCAGAACGGAGAATAGGTGTTTTGTATTCCATTTTGCAGAGAAAAATGTCAGCAAAT TTTGCTTTATTTTTATGAATTTTGGATAAATTTTTGCTTTAAAAATGTGAAAATGCTTCAAAATT GCATTGTTGGTTTCAATTTTTAAAACAATTTTTTCAGAATAAATT Found at i:635709 original size:10 final size:10 Alignment explanation
Indices: 635696--635722 Score: 31 Period size: 11 Copynumber: 2.6 Consensus size: 10 635686 ATTTTGCTTT * 635696 ATTTTTATGA 1 ATTTTTATAA * 635706 ATTTTGGATAA 1 ATTTT-TATAA 635717 ATTTTT 1 ATTTTT 635723 GCTTTAAAAA Statistics Matches: 13, Mismatches: 3, Indels: 2 0.72 0.17 0.11 Matches are distributed among these distances: 10 5 0.38 11 8 0.62 ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59 Consensus pattern (10 bp): ATTTTTATAA Left flanking sequence: Indices 635196 -- 635695 AAAAAAAATTCAATTATTCCCAAGTGGCTTGTGACCTGTTTGTTGGCATCAACACAAAAAAAGAG GTCGTCGGTTTTTGAGATTTTCCAAGGTTTTCAAGGTATACTGTAGATGATAATCACATCGTTTA CAAAATCAGGCAGGTATGTAGGCAAGTAGGCAGGCCTAAGGTCGTGCCTGCCTTTCATAAAAGCT TTACAGATATGATGTAGTCATATTTGATCTCCGATTTAAAAGTCTCTTTATTGTGTTTTTGTGTC CTCAGAACGCCTTTTCAATTATGATTTCATTTTATTTTTTTTGTGTATTTGTTCTGCAAAAATGA CACATTTAAAATTCCAGTCAAGTCGTTCGGAAAATAACAAAAACCATTTCCAAAACTCCACGTCA CTTGCTTTTATTCCTTGATTCTCACGCTTTTCACTAATGATTTTCCCAGAACGGAGAATAGGTGT TTTGTATTCCATTTTGCAGAGAAAAATGTCAGCAAATTTTGCTTT Right flanking sequence: Indices 635723 -- 636222 GCTTTAAAAATGTGAAAATGCTTCAAAATTGCATTGTTGGTTTCAATTTTTAAAACAATTTTTTC AGAATAAATTAGCACGAAATTCAAATACAAATTTTTAAAAAAGGTTATAGAAAAATAGAAAATAT CTTACTCGAACTATTTAAAAACATCGGCGGGGATCTCAAAATTTGATCTTTCAACTATTTACCGG GAAACTCAATTTCAACTTTTTCGATAATTTTTGATGGGATATTCAAGTTTTTCTAATAAATTTCA AATTAAAATTTATTTCTAAATTTGTTCAAATTTTCGGGAAATTGAAAGTTTTTCTCCAAAAAAAT TTGATGTGATATTCAAATTTAAATTTTCAAAAAAAAATTTAGGAGACAAAAATTAAGAAAAAAAG TTTAATTTTTTTTCGAAGGAACAGTTAAATTTAAACTTATGAAAATAATTTGCGAGAATTTCAAG ATTCAAATTTTCAAAAAAAAAATTGTTCTAAAAATTCTAATTAAT Found at i:635851 original size:7 final size:8 Alignment explanation
Indices: 635834--635849 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 635824 AAAAAAGGTT 635834 ATAGAAAA 1 ATAGAAAA 635842 ATAGAAAA 1 ATAGAAAA 635850 TATCTTACTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12 Consensus pattern (8 bp): ATAGAAAA Left flanking sequence: Indices 635334 -- 635833 GGCAGGTATGTAGGCAAGTAGGCAGGCCTAAGGTCGTGCCTGCCTTTCATAAAAGCTTTACAGAT ATGATGTAGTCATATTTGATCTCCGATTTAAAAGTCTCTTTATTGTGTTTTTGTGTCCTCAGAAC GCCTTTTCAATTATGATTTCATTTTATTTTTTTTGTGTATTTGTTCTGCAAAAATGACACATTTA AAATTCCAGTCAAGTCGTTCGGAAAATAACAAAAACCATTTCCAAAACTCCACGTCACTTGCTTT TATTCCTTGATTCTCACGCTTTTCACTAATGATTTTCCCAGAACGGAGAATAGGTGTTTTGTATT CCATTTTGCAGAGAAAAATGTCAGCAAATTTTGCTTTATTTTTATGAATTTTGGATAAATTTTTG CTTTAAAAATGTGAAAATGCTTCAAAATTGCATTGTTGGTTTCAATTTTTAAAACAATTTTTTCA GAATAAATTAGCACGAAATTCAAATACAAATTTTTAAAAAAGGTT Right flanking sequence: Indices 635850 -- 636349 TATCTTACTCGAACTATTTAAAAACATCGGCGGGGATCTCAAAATTTGATCTTTCAACTATTTAC CGGGAAACTCAATTTCAACTTTTTCGATAATTTTTGATGGGATATTCAAGTTTTTCTAATAAATT TCAAATTAAAATTTATTTCTAAATTTGTTCAAATTTTCGGGAAATTGAAAGTTTTTCTCCAAAAA AATTTGATGTGATATTCAAATTTAAATTTTCAAAAAAAAATTTAGGAGACAAAAATTAAGAAAAA AAGTTTAATTTTTTTTCGAAGGAACAGTTAAATTTAAACTTATGAAAATAATTTGCGAGAATTTC AAGATTCAAATTTTCAAAAAAAAAATTGTTCTAAAAATTCTAATTAATTTTTTTTTATTTGAAGG GAAATTTAAATTTAAATGTTTCAAAAAATTTCAATATTTTTTCTCCTCTCAATCTTTCCTTTAAT TCCCTAAAAATTTCCAAAGTTAATTTTTCAAATTTCAGACTTTTG Found at i:636904 original size:8 final size:8 Alignment explanation
Indices: 636891--636918 Score: 40 Period size: 8 Copynumber: 3.4 Consensus size: 8 636881 TTAATGGTAT 636891 GTAGGCAG 1 GTAGGCAG 636899 GTAGGCAG 1 GTAGGCAG * 636907 GCAGGCATG 1 GTAGGCA-G 636916 GTA 1 GTA 636919 AAGTCAAACT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 8 14 0.82 9 3 0.18 ACGTcount: A:0.25, C:0.14, G:0.46, T:0.14 Consensus pattern (8 bp): GTAGGCAG Left flanking sequence: Indices 636391 -- 636890 TGACCCAAAACCACTTCATTCGCCGGGAAAATTCGAACATGAAATATCCATAAAATCACATATTC TCTCTGAATAACCCTATAAAGTTCCAATTTTAGTCGACCAACACCGCATGACCATTTGTTTCCCA CCTTCATTTTGCATTCGTTAAAAGAAAATGAAATATTTACACACCTCGTGGTCTAAGTAGTGGGC CCCAGATGGAAAGCAGAGAGTCTATTCAAAATAGAAAATAATTGACGTCATTTCTATTTTTGCGG ATTTCTATTTTTCCACTAAATGTTTATTCTGTGGTGTCTTGCAAAAAGGTCCATATATATTCCAT TTATTAGGAATTTTGCAAAAAAATTGTTTTTGAACATTTCTGATGATATATACAACTATGCTAGT ACATCATTTGTTGGATTTTTAAAGGAAAAAAAAATTCCAATTTATAAACGATATTTGTAGGTACT GTTATAGGTCCTGCTTGCTATAGAACACGTGAGCATTAATGGTAT Right flanking sequence: Indices 636919 -- 637418 AAGTCAAACTTAAAATTTTCAAGGTAATCGGTATTTTTTTAACTGTTTACAAAAACTTTTGCTTC TTTAGTTTCATTTTGTTTCAGCTGGCCTAGAAATTTGATTCCGTTGTTTTTTTAATTCTGACCAA ACGTTTCCGCCAATTTTCATGGATTTTTTTTGAATTAAAATTTGTAAAAATCGGACATTTTTACG AGTTCTCAACTTGCCAGACGATTTAAATTTTGGTAAACTGCCAATTTTGCCAAAAATTGGAAAAA GTGCAATGTGACAAGTTGCCGACGGGCCTAAAGCGAGCAATTTGCACAGTTGCCGATTTGCCGGA AAATTCAATTTTTTGGCAAATTGCCGGGTTTCCGAACCGAAATTTTGAAAATAACTTTTTGCTGA ATTTTTGAACATTTTTTTGGTAGATGAATTTAAAAATATACATACATTTTTAGATGTTACGGTAA ATTTCGAAATATGGACAAATTGTCGATTTTCTTGATTTTCCGGCA Found at i:637003 original size:10 final size:10 Alignment explanation
Indices: 636975--637003 Score: 37 Period size: 10 Copynumber: 3.0 Consensus size: 10 636965 TTACAAAAAC * 636975 TTTTGCTTC- 1 TTTTGTTTCA * 636984 TTTAGTTTCA 1 TTTTGTTTCA 636994 TTTTGTTTCA 1 TTTTGTTTCA 637004 GCTGGCCTAG Statistics Matches: 16, Mismatches: 3, Indels: 1 0.80 0.15 0.05 Matches are distributed among these distances: 9 7 0.44 10 9 0.56 ACGTcount: A:0.10, C:0.14, G:0.10, T:0.66 Consensus pattern (10 bp): TTTTGTTTCA Left flanking sequence: Indices 636475 -- 636974 AGTTCCAATTTTAGTCGACCAACACCGCATGACCATTTGTTTCCCACCTTCATTTTGCATTCGTT AAAAGAAAATGAAATATTTACACACCTCGTGGTCTAAGTAGTGGGCCCCAGATGGAAAGCAGAGA GTCTATTCAAAATAGAAAATAATTGACGTCATTTCTATTTTTGCGGATTTCTATTTTTCCACTAA ATGTTTATTCTGTGGTGTCTTGCAAAAAGGTCCATATATATTCCATTTATTAGGAATTTTGCAAA AAAATTGTTTTTGAACATTTCTGATGATATATACAACTATGCTAGTACATCATTTGTTGGATTTT TAAAGGAAAAAAAAATTCCAATTTATAAACGATATTTGTAGGTACTGTTATAGGTCCTGCTTGCT ATAGAACACGTGAGCATTAATGGTATGTAGGCAGGTAGGCAGGCAGGCATGGTAAAGTCAAACTT AAAATTTTCAAGGTAATCGGTATTTTTTTAACTGTTTACAAAAAC Right flanking sequence: Indices 637004 -- 637503 GCTGGCCTAGAAATTTGATTCCGTTGTTTTTTTAATTCTGACCAAACGTTTCCGCCAATTTTCAT GGATTTTTTTTGAATTAAAATTTGTAAAAATCGGACATTTTTACGAGTTCTCAACTTGCCAGACG ATTTAAATTTTGGTAAACTGCCAATTTTGCCAAAAATTGGAAAAAGTGCAATGTGACAAGTTGCC GACGGGCCTAAAGCGAGCAATTTGCACAGTTGCCGATTTGCCGGAAAATTCAATTTTTTGGCAAA TTGCCGGGTTTCCGAACCGAAATTTTGAAAATAACTTTTTGCTGAATTTTTGAACATTTTTTTGG TAGATGAATTTAAAAATATACATACATTTTTAGATGTTACGGTAAATTTCGAAATATGGACAAAT TGTCGATTTTCTTGATTTTCCGGCAAAAAACCACAATTTGCCAATTTCGCCGAATTTCACAGTTG AGCTAAACCTTTTTCACCTTTCCTTTTTCTGAGTCAGAAGTCCGG Found at i:637451 original size:10 final size:9 Alignment explanation
Indices: 637427--637451 Score: 34 Period size: 8 Copynumber: 2.8 Consensus size: 9 637417 CAAAAAACCA 637427 CAATTT-GC 1 CAATTTCGC 637435 CAATTTCGC 1 CAATTTCGC 637444 CGAATTTC 1 C-AATTTC 637452 ACAGTTGAGC Statistics Matches: 15, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 8 6 0.40 9 3 0.20 10 6 0.40 ACGTcount: A:0.24, C:0.28, G:0.12, T:0.36 Consensus pattern (9 bp): CAATTTCGC Left flanking sequence: Indices 636927 -- 637426 CTTAAAATTTTCAAGGTAATCGGTATTTTTTTAACTGTTTACAAAAACTTTTGCTTCTTTAGTTT CATTTTGTTTCAGCTGGCCTAGAAATTTGATTCCGTTGTTTTTTTAATTCTGACCAAACGTTTCC GCCAATTTTCATGGATTTTTTTTGAATTAAAATTTGTAAAAATCGGACATTTTTACGAGTTCTCA ACTTGCCAGACGATTTAAATTTTGGTAAACTGCCAATTTTGCCAAAAATTGGAAAAAGTGCAATG TGACAAGTTGCCGACGGGCCTAAAGCGAGCAATTTGCACAGTTGCCGATTTGCCGGAAAATTCAA TTTTTTGGCAAATTGCCGGGTTTCCGAACCGAAATTTTGAAAATAACTTTTTGCTGAATTTTTGA ACATTTTTTTGGTAGATGAATTTAAAAATATACATACATTTTTAGATGTTACGGTAAATTTCGAA ATATGGACAAATTGTCGATTTTCTTGATTTTCCGGCAAAAAACCA Right flanking sequence: Indices 637452 -- 637951 ACAGTTGAGCTAAACCTTTTTCACCTTTCCTTTTTCTGAGTCAGAAGTCCGGTCTGAATCTATTG GTTTTTCAGTCACAAACAACATAAATTGGAAGCACAAATTACACAAATTGGCAACCAAATTGGTC GGTAGACCGCCGCCACAAAAAATGTTCCCTTTCAATATGGAGGCAGAAATATATATATTCATATT TTTAAAAAAGTGTTCTTTCATTTTCTGTGATTTTTTATTCTTTTTGATATATGCTGTGTTCTTTG TTTTATATATGTTCATATCAAAAAATAACTCTAAGACTTATGGGCTTAATGCTTAAAAACTTCCC CGTTCTCATTGTCAGTCAAAACTTCTGAATCTTGAATTGTTCCTGACCTGACATACGAATCTGTT TTTCATTTTGTGTTTTGTTTTTCTCAAAACTTTCGATCCCGAGTACAAATATTGTGATTAGTTCC AGCAGTACTTGTATTTTTTGAAAATATTTTTCTTTGAAATGTCTG Found at i:637857 original size:7 final size:7 Alignment explanation
Indices: 637847--637863 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 637837 CTGTTTTTCA 637847 TTTTGTG 1 TTTTGTG * 637854 TTTTGTT 1 TTTTGTG 637861 TTT 1 TTT 637864 CTCAAAACTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82 Consensus pattern (7 bp): TTTTGTG Left flanking sequence: Indices 637347 -- 637846 TACATACATTTTTAGATGTTACGGTAAATTTCGAAATATGGACAAATTGTCGATTTTCTTGATTT TCCGGCAAAAAACCACAATTTGCCAATTTCGCCGAATTTCACAGTTGAGCTAAACCTTTTTCACC TTTCCTTTTTCTGAGTCAGAAGTCCGGTCTGAATCTATTGGTTTTTCAGTCACAAACAACATAAA TTGGAAGCACAAATTACACAAATTGGCAACCAAATTGGTCGGTAGACCGCCGCCACAAAAAATGT TCCCTTTCAATATGGAGGCAGAAATATATATATTCATATTTTTAAAAAAGTGTTCTTTCATTTTC TGTGATTTTTTATTCTTTTTGATATATGCTGTGTTCTTTGTTTTATATATGTTCATATCAAAAAA TAACTCTAAGACTTATGGGCTTAATGCTTAAAAACTTCCCCGTTCTCATTGTCAGTCAAAACTTC TGAATCTTGAATTGTTCCTGACCTGACATACGAATCTGTTTTTCA Right flanking sequence: Indices 637864 -- 638363 CTCAAAACTTTCGATCCCGAGTACAAATATTGTGATTAGTTCCAGCAGTACTTGTATTTTTTGAA AATATTTTTCTTTGAAATGTCTGAAATTTATAGAAAAGTGTAAGCTCGTTCACGGAGCATCTGGA GAAATTTTAAGTATTGAAAACAACGTTTCAAGAGTTTTTGCCAATATTTTTTAAATAAAATTTTC AATAATTTTAAGAATAACTTTTAAACCTTTTTAACTTTCAGGCAAAAAGTTTTTAAATTTATTTT TCTAAATATTTTTTCAAACTTCTTGGCAACTTTTAAAAATTTTAAGTAAGTCAAGTTTTCAACCA ACTTTTTTTTTCATTTTTCAAATTGAAAACCTTTCATATTCATTATAGAATTTTCAGTAAATCTT TCGTGTAAATTTCGATCGATAAAATTATTTTTAAAAATTCCACTGTGTTTTTTGAATTTGCAGAA CATTTCTTTCAAGTTTTTTTTCAAAAGTTTGCAAGGTTTTAGTCG Found at i:638207 original size:7 final size:7 Alignment explanation
Indices: 638195--638208 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 638185 ACCAACTTTT 638195 TTTTTCA 1 TTTTTCA 638202 TTTTTCA 1 TTTTTCA 638209 AATTGAAAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTTCA Left flanking sequence: Indices 637695 -- 638194 ATATGCTGTGTTCTTTGTTTTATATATGTTCATATCAAAAAATAACTCTAAGACTTATGGGCTTA ATGCTTAAAAACTTCCCCGTTCTCATTGTCAGTCAAAACTTCTGAATCTTGAATTGTTCCTGACC TGACATACGAATCTGTTTTTCATTTTGTGTTTTGTTTTTCTCAAAACTTTCGATCCCGAGTACAA ATATTGTGATTAGTTCCAGCAGTACTTGTATTTTTTGAAAATATTTTTCTTTGAAATGTCTGAAA TTTATAGAAAAGTGTAAGCTCGTTCACGGAGCATCTGGAGAAATTTTAAGTATTGAAAACAACGT TTCAAGAGTTTTTGCCAATATTTTTTAAATAAAATTTTCAATAATTTTAAGAATAACTTTTAAAC CTTTTTAACTTTCAGGCAAAAAGTTTTTAAATTTATTTTTCTAAATATTTTTTCAAACTTCTTGG CAACTTTTAAAAATTTTAAGTAAGTCAAGTTTTCAACCAACTTTT Right flanking sequence: Indices 638209 -- 638708 AATTGAAAACCTTTCATATTCATTATAGAATTTTCAGTAAATCTTTCGTGTAAATTTCGATCGAT AAAATTATTTTTAAAAATTCCACTGTGTTTTTTGAATTTGCAGAACATTTCTTTCAAGTTTTTTT TCAAAAGTTTGCAAGGTTTTAGTCGATGATTTTATAAAAATTCTTTTAAAATTTTTGAAAAATTT TTTGAGTTTTTATAACTATTAAATCAAAACTTTTTTAGCATTGTAAAATATTTTTTCGAGATTCG TAAGATTAAATTTTGACTTCTGTGCTCTGAGATTTGTGCCAAATCTCTTCTGTTTCTTCTACTCA TTCATTCATTCGCTCTGTTGCAACTTTCCTCATGTGCAGATGCAATTTAGCGTGTGACTGATTGA CCAGCAATAAATTATATCATATCTGTTTAACTTTTGCAGAATATTCAGTAGTAATAGTAGTAGTT GGTAACATGTGATATATTCAAGATGTGAGAACTATGAAAGATCAT Found at i:638391 original size:11 final size:10 Alignment explanation
Indices: 638375--638404 Score: 37 Period size: 10 Copynumber: 2.9 Consensus size: 10 638365 TGATTTTATA * 638375 AAAATTCTTTT 1 AAAATT-TTTG 638386 AAAATTTTTG 1 AAAATTTTTG * 638396 AAAAATTTT 1 AAAATTTTT 638405 TTGAGTTTTT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 10 11 0.65 11 6 0.35 ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50 Consensus pattern (10 bp): AAAATTTTTG Left flanking sequence: Indices 637875 -- 638374 CGATCCCGAGTACAAATATTGTGATTAGTTCCAGCAGTACTTGTATTTTTTGAAAATATTTTTCT TTGAAATGTCTGAAATTTATAGAAAAGTGTAAGCTCGTTCACGGAGCATCTGGAGAAATTTTAAG TATTGAAAACAACGTTTCAAGAGTTTTTGCCAATATTTTTTAAATAAAATTTTCAATAATTTTAA GAATAACTTTTAAACCTTTTTAACTTTCAGGCAAAAAGTTTTTAAATTTATTTTTCTAAATATTT TTTCAAACTTCTTGGCAACTTTTAAAAATTTTAAGTAAGTCAAGTTTTCAACCAACTTTTTTTTT CATTTTTCAAATTGAAAACCTTTCATATTCATTATAGAATTTTCAGTAAATCTTTCGTGTAAATT TCGATCGATAAAATTATTTTTAAAAATTCCACTGTGTTTTTTGAATTTGCAGAACATTTCTTTCA AGTTTTTTTTCAAAAGTTTGCAAGGTTTTAGTCGATGATTTTATA Right flanking sequence: Indices 638405 -- 638904 TTGAGTTTTTATAACTATTAAATCAAAACTTTTTTAGCATTGTAAAATATTTTTTCGAGATTCGT AAGATTAAATTTTGACTTCTGTGCTCTGAGATTTGTGCCAAATCTCTTCTGTTTCTTCTACTCAT TCATTCATTCGCTCTGTTGCAACTTTCCTCATGTGCAGATGCAATTTAGCGTGTGACTGATTGAC CAGCAATAAATTATATCATATCTGTTTAACTTTTGCAGAATATTCAGTAGTAATAGTAGTAGTTG GTAACATGTGATATATTCAAGATGTGAGAACTATGAAAGATCATTGAGCAGAATTTTAATGTGAA CGTTTTAAGGGTGGTTGAGCATTCAAATGTCATGTATGCACCTGAATATGCGTGTATATATTCCA GGTTTGTATCAGTTTTTTGAGAATTATTTATAATTTATTTAATTCCAAAAAAAATTAGTTTTCTT TAAATTTCAAATATTAGTATTTTGGCAAAATCACGTTTTATTTCC Found at i:640165 original size:9 final size:9 Alignment explanation
Indices: 640151--640169 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 640141 TTTGTCATTT 640151 ATTTTCAAA 1 ATTTTCAAA 640160 ATTTTCAAA 1 ATTTTCAAA 640169 A 1 A 640170 AGAAAAATTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42 Consensus pattern (9 bp): ATTTTCAAA Left flanking sequence: Indices 639651 -- 640150 CAGGTATGCAAAATGATTAAACCAAACATCTCCTAATCCAGACACCTTTCTCGGTAGCAATTTTC ATTGCAATTTTTTTTTCTCGAATAATCAAAAAAAGCGAAAACAAAGTATCTTTAATAGACTTCTT CATCATCAGCAATTTCTTTGGAAAAGCAAGTTTTTCGATCTCCACAATTTTCAGAACCTATTCAT CGCATGTTTTCCGGGCCCCGGGGGTTCCGATTATTATTCTTGTTCTCTGGGAATAAGTCATTTGT GAGCTTTTTTGTTCAGTTTTCGATCAAAACCCAAAGCGACCCGCTTATATTAATAATGGTCTTGG TCTACATGCCAAAAAATGCAGACTAATCAAATTTTCAATTCAATGTGTCATTGTTGAAATGTCAA GTTCCAAAAAATTGCTCTATAATGTAGTTTTTGCATAGTTTTTTTAAAAATTTTTTTAGATTCAT TTTCGAACTCCGAAAATACCGAATTAGTTCAAGAATTTGTCATTT Right flanking sequence: Indices 640170 -- 640669 AGAAAAATTAAAATTTTCTAACAAAAAGAGACTTTTCAAAAATTAGGCATGAGCCTAAGTCCACT AAGCCTAAGCCCACTAAGCCTAAGCCCACTAAGCCTAAGCCCACTAAGCCTAAGCCCACTTAGGC TAAGCCCATTAAGCCTAAGCCTAAGCATGAACCTAACCCAAAATTTCTCGAAGTTGAATTTGAAC TATACCGCATGAATTTTTAGTGTGAAGCTGTACTTTCCAGCACTTTACATGTACTTTTTCCCCGA CTCTCCCTTAAATTTAATGTTTTTTCGGGAATTCGACAAATAACAAACTCAGTTCTATTTTCGAA TCGACCACAAAATCGACCCATTAGCATTCCCTAATTGCTGCTCCGCCGAAGAGAAGCTCGTCATA CATAAATTTAAAGGCAAGAAAAAGGGATACCGAACCTTCGATCTTACTCTTTTTTGCTCTTTTTG TTTTGTTTTGCAGGAGAGTTCCTTTTTTGCTGCAAAAATATTTGT Found at i:640251 original size:9 final size:9 Alignment explanation
Indices: 640224--640284 Score: 52 Period size: 9 Copynumber: 7.8 Consensus size: 9 640214 AGGCATGAGC * 640224 CTAAGTCCA 1 CTAAGCCCA 640233 CTAAG--C- 1 CTAAGCCCA 640239 CTAAGCCCA 1 CTAAGCCCA 640248 CTAAG--C- 1 CTAAGCCCA 640254 CTAAGCCCA 1 CTAAGCCCA 640263 CTAAG--C- 1 CTAAGCCCA 640269 CTAAGCCCA 1 CTAAGCCCA 640278 CTAAGCC 1 CTAAGCC 640285 TAAGCCCACT Statistics Matches: 43, Mismatches: 0, Indels: 18 0.70 0.00 0.30 Matches are distributed among these distances: 6 15 0.35 7 3 0.07 8 3 0.07 9 22 0.51 ACGTcount: A:0.33, C:0.39, G:0.13, T:0.15 Consensus pattern (9 bp): CTAAGCCCA Left flanking sequence: Indices 639724 -- 640223 TTTTTTTTCTCGAATAATCAAAAAAAGCGAAAACAAAGTATCTTTAATAGACTTCTTCATCATCA GCAATTTCTTTGGAAAAGCAAGTTTTTCGATCTCCACAATTTTCAGAACCTATTCATCGCATGTT TTCCGGGCCCCGGGGGTTCCGATTATTATTCTTGTTCTCTGGGAATAAGTCATTTGTGAGCTTTT TTGTTCAGTTTTCGATCAAAACCCAAAGCGACCCGCTTATATTAATAATGGTCTTGGTCTACATG CCAAAAAATGCAGACTAATCAAATTTTCAATTCAATGTGTCATTGTTGAAATGTCAAGTTCCAAA AAATTGCTCTATAATGTAGTTTTTGCATAGTTTTTTTAAAAATTTTTTTAGATTCATTTTCGAAC TCCGAAAATACCGAATTAGTTCAAGAATTTGTCATTTATTTTCAAAATTTTCAAAAAGAAAAATT AAAATTTTCTAACAAAAAGAGACTTTTCAAAAATTAGGCATGAGC Right flanking sequence: Indices 640285 -- 640784 TAAGCCCACTTAGGCTAAGCCCATTAAGCCTAAGCCTAAGCATGAACCTAACCCAAAATTTCTCG AAGTTGAATTTGAACTATACCGCATGAATTTTTAGTGTGAAGCTGTACTTTCCAGCACTTTACAT GTACTTTTTCCCCGACTCTCCCTTAAATTTAATGTTTTTTCGGGAATTCGACAAATAACAAACTC AGTTCTATTTTCGAATCGACCACAAAATCGACCCATTAGCATTCCCTAATTGCTGCTCCGCCGAA GAGAAGCTCGTCATACATAAATTTAAAGGCAAGAAAAAGGGATACCGAACCTTCGATCTTACTCT TTTTTGCTCTTTTTGTTTTGTTTTGCAGGAGAGTTCCTTTTTTGCTGCAAAAATATTTGTCCAAT TTTCTTCTAGGTAGCTGAACAATTTAGAGAATTCTTGCGTCATGAATTAGACAAATTCATTATTT TTCTTGTTTTCGTGGGAGAAATGTGAAGCTTAGGGCTTAGGCTTA Found at i:642706 original size:7 final size:7 Alignment explanation
Indices: 642694--642707 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 642684 AATTAGAGAA 642694 TATTTTC 1 TATTTTC 642701 TATTTTC 1 TATTTTC 642708 CTTATCATGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71 Consensus pattern (7 bp): TATTTTC Left flanking sequence: Indices 642194 -- 642693 AGGTAGGCATGCAGGCGGCAAATAGGCATCATGTAGGCTTGCATGCAGGCATATTCTGTAAGTTA ACAAGTTTGCAGAATATGGGCATGTAGGTAGAAGCAATCATGTGGACACGCGTTTCTAAAAGCAT GCTGGCGGCTAGCATAGGTAGGCAGGTACATGTAGGTATTATGTATGCGTTCAAGGATGATTTAG GCGGTCAGTTTGCAGGTTGGCATGATGTAGGCATAACGTAGGCAGGCACCGCCTAGCATACCTCC AGGTGTCAAAAAAATTCCATAGTGACCCACAAAACACGCGCTGGTCAACCCGAGTGAGACCTTTC CCGTGAATCATAACCTAATCCTATTTATGAATTTTCGATATGTATAATTATATTCTAGTTTTGGT TTGTTTTTTTCCTCGTTCTTCTAGTTTTGGGTTTGTTCCGCGTAGACTTCCTTTTTCTTTTTTTT TTTGTTTAGTCTCACTGGTCATTCATCTATCTTCTAATTAGAGAA Right flanking sequence: Indices 642708 -- 643207 CTTATCATGAGGCGTTTCCCGGCGGTGCTCTCCTCCCGGAAACACTTGGCAAAAACTAGGTAGGC ACGCAGGCACGCATCAAGAAAAACTTGATTCCCTAGATTTTTGAAATCAAGAATCCAACTCTTTC AAATTTCACGATTAATATGCGGACATTTGTATGTGCGTAATCAGAAACCAGTGCACATGCGTGGA AGGGGATGCTCTTGTTCTTACGGCTCACGGAGCACAATGTTCAAACAGCGACGGTGTTTCTAGCA TTTGTTTTTCTGATTCTATCTTTTTTTCAACAGATAGATTAGAGCTATTTGTGATGTGGGTTTTC ATCCGTTTCTAGTACCAATTTCCAAACTTGTTTAGTTTCAGCAAAAATAGTAAAAAAATCGGAAA TGTTAATCGGAAATTTCAGAAGGAAACATTTTTTCCAGATTAGTTTTTGCATTACGAGCTTATCC TAAATCCTAGAAACAAACCTGCCTGACCTACGCCTACCTTGTGAC Found at i:642782 original size:8 final size:8 Alignment explanation
Indices: 642769--642785 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 642759 AAAACTAGGT 642769 AGGCACGC 1 AGGCACGC 642777 AGGCACGC 1 AGGCACGC 642785 A 1 A 642786 TCAAGAAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.29, C:0.35, G:0.35, T:0.00 Consensus pattern (8 bp): AGGCACGC Left flanking sequence: Indices 642269 -- 642768 AGAATATGGGCATGTAGGTAGAAGCAATCATGTGGACACGCGTTTCTAAAAGCATGCTGGCGGCT AGCATAGGTAGGCAGGTACATGTAGGTATTATGTATGCGTTCAAGGATGATTTAGGCGGTCAGTT TGCAGGTTGGCATGATGTAGGCATAACGTAGGCAGGCACCGCCTAGCATACCTCCAGGTGTCAAA AAAATTCCATAGTGACCCACAAAACACGCGCTGGTCAACCCGAGTGAGACCTTTCCCGTGAATCA TAACCTAATCCTATTTATGAATTTTCGATATGTATAATTATATTCTAGTTTTGGTTTGTTTTTTT CCTCGTTCTTCTAGTTTTGGGTTTGTTCCGCGTAGACTTCCTTTTTCTTTTTTTTTTTGTTTAGT CTCACTGGTCATTCATCTATCTTCTAATTAGAGAATATTTTCTATTTTCCTTATCATGAGGCGTT TCCCGGCGGTGCTCTCCTCCCGGAAACACTTGGCAAAAACTAGGT Right flanking sequence: Indices 642786 -- 643285 TCAAGAAAAACTTGATTCCCTAGATTTTTGAAATCAAGAATCCAACTCTTTCAAATTTCACGATT AATATGCGGACATTTGTATGTGCGTAATCAGAAACCAGTGCACATGCGTGGAAGGGGATGCTCTT GTTCTTACGGCTCACGGAGCACAATGTTCAAACAGCGACGGTGTTTCTAGCATTTGTTTTTCTGA TTCTATCTTTTTTTCAACAGATAGATTAGAGCTATTTGTGATGTGGGTTTTCATCCGTTTCTAGT ACCAATTTCCAAACTTGTTTAGTTTCAGCAAAAATAGTAAAAAAATCGGAAATGTTAATCGGAAA TTTCAGAAGGAAACATTTTTTCCAGATTAGTTTTTGCATTACGAGCTTATCCTAAATCCTAGAAA CAAACCTGCCTGACCTACGCCTACCTTGTGACTGGACCTAATGCTTACCTACTGAACATTGCCTA CCCCTCGGTCATCTGCTTATAGCCTACTATTGTGTGTACTACCAT Found at i:643766 original size:8 final size:8 Alignment explanation
Indices: 643753--643768 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 643743 TGATGTGCAC 643753 CTTTTTTT 1 CTTTTTTT 643761 CTTTTTTT 1 CTTTTTTT 643769 TTGTTGGATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (8 bp): CTTTTTTT Left flanking sequence: Indices 643253 -- 643752 CTGCTTATAGCCTACTATTGTGTGTACTACCATAAATTTCTGCATAAATACTGCATAAATTTCAA TGACATACCGTGTGTCTAGCTTGCGGCAACATGTTTACCTTTCAAAAAGAGTACTGCCTAGTACA CAAGTACCTGCCTGTAGGCATGCGACTTACCTACTGGCTACCTTACGGCAATATACCTACCGCTT GGCTATTTTTCACCTGCCCAAATGCTATCTAGGTGGCTTACGCCTGTGCCTTGACTAGGTAGTGG CAAACATGAGATAACAGGGAGGTAGGCACGTAGGCTGTTAAGATTGCCCGGCTTTTCGGATTATT TTATCTTTACAAACACATGTGTTTTCCAGGTAAACCAAATTCCAATCTTAACTCGGTCAACAGAA GATTTAAATTTCTGAAAAAACACCGAAAAGATTTCGTGATAATCCATGTGGGTGGTGATGTCCAA GTATCGGGGTATAAAAGAAATCCATGTGCTCGGAATGATGTGCAC Right flanking sequence: Indices 643769 -- 644268 TTGTTGGATTTTCTCGGAAATATGAAACCAAATATAAGTTTGTACATAGTTTCGTCATTTCAAAC AGAAAATTTGTACGCAAAAAATAATATTTTTATTAGTTTTTTGTGTATGCAAGGGTGAGAGCAGC AAATTGAGCAAATAATAATAATGATAATAATAGCTCCAAATGTTTGCTGAAATTTTTTCCCAATA TGTTTTGAAGCGGTAAACATTTGCGTGCATATTTGGATATTTGCCCCCGCAGTTTTGTGGCTAAA AATTTTGTCGTTTTTAGGCTTACATCTTGCCTACCAGAGAGTTGTTTCCTATATCATGCCCCTTT AAGTGTGTGTGCCTGTCATTCGCCTGTCTGATGTCTGCCTACCTGATGTCTGCCTACCTGAGATA GCTACCAAGCCGAGGGCAGCCATGAGGTGTGACTACCCTATACCTACCAGTACCTACCAGAAACG TGCCTACATTACTCATGTCTGCCTACATGCCTACCGCACGCCTGC Found at i:644214 original size:10 final size:10 Alignment explanation
Indices: 644199--644218 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 644189 GACTACCCTA 644199 TACCTACCAG 1 TACCTACCAG 644209 TACCTACCAG 1 TACCTACCAG 644219 AAACGTGCCT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.40, G:0.10, T:0.20 Consensus pattern (10 bp): TACCTACCAG Left flanking sequence: Indices 643699 -- 644198 GATGTCCAAGTATCGGGGTATAAAAGAAATCCATGTGCTCGGAATGATGTGCACCTTTTTTTCTT TTTTTTTGTTGGATTTTCTCGGAAATATGAAACCAAATATAAGTTTGTACATAGTTTCGTCATTT CAAACAGAAAATTTGTACGCAAAAAATAATATTTTTATTAGTTTTTTGTGTATGCAAGGGTGAGA GCAGCAAATTGAGCAAATAATAATAATGATAATAATAGCTCCAAATGTTTGCTGAAATTTTTTCC CAATATGTTTTGAAGCGGTAAACATTTGCGTGCATATTTGGATATTTGCCCCCGCAGTTTTGTGG CTAAAAATTTTGTCGTTTTTAGGCTTACATCTTGCCTACCAGAGAGTTGTTTCCTATATCATGCC CCTTTAAGTGTGTGTGCCTGTCATTCGCCTGTCTGATGTCTGCCTACCTGATGTCTGCCTACCTG AGATAGCTACCAAGCCGAGGGCAGCCATGAGGTGTGACTACCCTA Right flanking sequence: Indices 644219 -- 644718 AAACGTGCCTACATTACTCATGTCTGCCTACATGCCTACCGCACGCCTGCCTATACTTCTTCCCC TCAATTTTTCACTAATGTTAATTCGCGTGAATGCATAAGCCAAAAAAGAGTGAAGTTTACTTTTT TTTTTTTTCAAAAAATGATGTTTCAAATTCACTCAGAAATGTTTGCTTGTCTCTTTGAAAAAGGT TCTCAAATTCATATTTCCTACAAAAAGAGCCTTCTGTTCAGAAATCCAATTCCATGAATATTTAG TTTGCCGCCAAATCTCAAATTTCTGGAACTAGTTCCCCAACTTTTCTTTACTTTTCAAAATTCAG AAATCACCGGCTCTTTTTGCAGATTGAGTGAAAAAATTCTCATTTTTCTTGTCAAGTGGGTGAAA GAAGCTTATGTATATGTATACGTATACAACTTTTTGTTGTTGTTCACTTTTTGCTGGATATACAA ATCGGATCGAATAGCGCACACAAAAAGTCACGAGGTTCGACCGAG Found at