TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:8068236 original size:7 final size:7 Alignment explanation
Indices: 8068224--8068256 Score: 45 Period size: 7 Copynumber: 4.7 Consensus size: 7 8068214 TTTATTTATT 8068224 TATTTAC 1 TATTTAC * 8068231 TATTTAT 1 TATTTAC ** 8068238 TATTTTA 1 TATTTAC 8068245 TATTTAC 1 TATTTAC 8068252 TATTT 1 TATTT 8068257 TATAATAAGG Statistics Matches: 21, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 7 21 1.00 ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67 Consensus pattern (7 bp): TATTTAC Left flanking sequence: Indices 8067724 -- 8068223 ACATCGTCAGCATAAGCGTTGCACATAGCGTGTAGCGTGTTTTTTTAAACTTTAGTCGTTTACGT AAAATTTTATTTTCTAAATTATTACGAACTTAAAATTAAAATTTTGATATTATTATTCCCACGTT TAAAATAAACAATAAAATGTCTCCTAAAATTTTGATATTTAGAGTGTTTTCAAGTGGGATTTCCA TATTTCCCGGGTTGCGTCGCGTTAGTACAAAACTTATCACTTGAGTTTCATCGCTTGCGTTAAGT TTCAGAAAAACTCCGCTTGACCTATTTTTTGACTTCATTTAGTTTTGCTTGTTGTTTGTAGGACT TTGATCTGGTGATCTCGTAAAAGTTTAAATTAAGCTTTTTGACATTATCCCAAAAATGGCATCAA CCCAAACAAAGCTTAAAGATTGGATTAAACGAGAAAACCCTGCATGCTCTGTTTCCTTCGAAATG TGCCTAGCCCTGGGAAATTTTATAATTTAATTTAATTTATTTATT Right flanking sequence: Indices 8068257 -- 8068756 TATAATAAGGCGAAAGCAATTGATTCTTGCTACCAACAAGAAAGGCTATAAGGGGCTTTATGGTA TTTCAAGCAATTTTTAGCTAGCAATCGGATCATCTCAACTCAAATTTACTTTTGGTGGCGACGAT TTATTCTTCGTGTTCGCTACGATTGTTGCTTAAAGTTGGAGCGTTGTTACCCATTACCACAAACA AATTGAAAAAAAAAGAATTAGAGATTCGACGAATTTTGCAAAGAAGCATGTGCCGTCATCAAAGA GTTGCGAGGGATAGGAGAGTGTTGCAACGGAATAACATTTGATACAAAATGTTTCTTACCTGAAA GCACTTAAAGTTAGTTCCCTGAAACCCTGAAACAAAACTTACATAACACACAATTTCTGAATTCT TTTACACATAAAATTGCAAAAATAGGTTCAATTGCAGGATAAATACTAGCAAACATTCCAGGAAT ATTTGCTAGCTTTCCCACTTCTATTTCAAATATTGGAACTGTTAG Found at i:8068611 original size:8 final size:8 Alignment explanation
Indices: 8068598--8068614 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 8068588 AAAGTTAGTT 8068598 CCCTGAAA 1 CCCTGAAA 8068606 CCCTGAAA 1 CCCTGAAA 8068614 C 1 C 8068615 AAAACTTACA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.41, G:0.12, T:0.12 Consensus pattern (8 bp): CCCTGAAA Left flanking sequence: Indices 8068098 -- 8068597 CCAAAAATGGCATCAACCCAAACAAAGCTTAAAGATTGGATTAAACGAGAAAACCCTGCATGCTC TGTTTCCTTCGAAATGTGCCTAGCCCTGGGAAATTTTATAATTTAATTTAATTTATTTATTTATT TACTATTTATTATTTTATATTTACTATTTTATAATAAGGCGAAAGCAATTGATTCTTGCTACCAA CAAGAAAGGCTATAAGGGGCTTTATGGTATTTCAAGCAATTTTTAGCTAGCAATCGGATCATCTC AACTCAAATTTACTTTTGGTGGCGACGATTTATTCTTCGTGTTCGCTACGATTGTTGCTTAAAGT TGGAGCGTTGTTACCCATTACCACAAACAAATTGAAAAAAAAAGAATTAGAGATTCGACGAATTT TGCAAAGAAGCATGTGCCGTCATCAAAGAGTTGCGAGGGATAGGAGAGTGTTGCAACGGAATAAC ATTTGATACAAAATGTTTCTTACCTGAAAGCACTTAAAGTTAGTT Right flanking sequence: Indices 8068615 -- 8069114 AAAACTTACATAACACACAATTTCTGAATTCTTTTACACATAAAATTGCAAAAATAGGTTCAATT GCAGGATAAATACTAGCAAACATTCCAGGAATATTTGCTAGCTTTCCCACTTCTATTTCAAATAT TGGAACTGTTAGGATTGTTCCAACTGTGCTGTACATTGTGAAGAATGGAAAAATTGTCTGCAAAT AATTTTTAGTAAACGTTTTAAAACTCGGAAAAATCTCACTTGGAACATCAAAGTCATCATTAACT GTCGATTTAGCTCTTTTGTTCTTACACTCATCGAATTTAAATCTTCTTTTAATTTAAAGTATATT TTCATGGCGCAAAATACAATAGTGAGAAAACAAGAGGCAATCATTAAAAGAAATCCCAAATAGCA CACAAAATCAATCATTCGAAAATGTGATTTCCCATTGAGATCATCTTCCCAATACTGCAATGCAA CGAATACAATTTGGAATGTATCTTCTTCGTAAATATCCAAAACAA Found at i:8074891 original size:8 final size:8 Alignment explanation
Indices: 8074878--8074895 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 8074868 TGACGCTTAC 8074878 TATTTTCT 1 TATTTTCT * 8074886 TATTTTTT 1 TATTTTCT 8074894 TA 1 TA 8074896 GCAGTCGGAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78 Consensus pattern (8 bp): TATTTTCT Left flanking sequence: Indices 8074378 -- 8074877 GAGTGGTGATTTCATTTGTTTGCTAAATTTTACTTCGTGAAGTTCTACTTTCCACGTTGATTTTT TGTAGTTTTTTTTTTTGCGAAATTATAATACAAACTGTGTTTTTTCTCAATAATATATCTGCGCA AGCGAAAATACGGATTCTGTTTTGAAAACTCACGGGTTGTGCGATAAACTCAATCCACGTATAGA CCAAAGAATAAAATGCAAAAACAGCCATCACATGTCGATAACTTCCAAATAATCTCTCAGCTCTA GTAAGAATGAGAAACAAAAGACACGAGTTGGTAAGTTGCCCAACTATGAAACCTGCATATTGGGC TATATGAAGACACAATTTAAGAGTCAGCCCCATTGGATTTAATTGCGACGAAAATACACAAACAT CGATGCTTATATATAAATATGATAAGGAGGAGTTAATGCCAAAAACTGGGAAGTGAGCATACAAA ATAATAACATGAATTGTTCTTAAGAAAACTCCCGATGACGCTTAC Right flanking sequence: Indices 8074896 -- 8075395 GCAGTCGGAAATGACTAACATGTATGTAATATATTTTTAATCCTTGAAGAAATTGAAAACCGACA ATCTATTCTTGGTCCTAATCTATGACGTTGAAGTAGCTCATAAATTACAAAAAGTACACATTCCA CAATTTCATCGCACAAGTGTAGTACAGCACAATTAAAATTAATTATAAATACGAGAAGTTAAAAA TACAGTGACTGTGACTAGTTAGGAATGAGACAGAAGGCAGCAGTTCACCATATGGACACTCAACA CTCCGGTCAAGAAATTTGAGATCCAGAAAACCACTCGAGAAAACGTCAAATAGGCCACGACCAAA GAACTTCAGAAAGGTTCTTGGAAGGCCGTCCCGCCTATCTCCGCCGTCGAGAAGCTTCTCCCTAG AGTAACAAGAGTGGAGCTTACCAGACTAAATGCTTTAGAAGGATCCCAAATCAGTGGCAGAGGCC CTCGGTCTCCCTACGAAAGTCTTCAATCCAGGTTGATCACCATGA Found at i:8076748 original size:10 final size:9 Alignment explanation
Indices: 8076733--8076753 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 8076723 CTTTTAATTA 8076733 TTCACCACAT 1 TTCACCA-AT 8076743 TTCACCAAT 1 TTCACCAAT 8076752 TT 1 TT 8076754 GATAGTTTGG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 4 0.36 10 7 0.64 ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38 Consensus pattern (9 bp): TTCACCAAT Left flanking sequence: Indices 8076233 -- 8076732 AGTTTGAACTCTATGCTTTTGGGATCTCTTGAGTATTTTCATTTGGTCTAGTGACGTAGCAATAA GGAATCAAACAATGAATATTCGGATTGATGCAGAAATTGTTGAGTGTCTATCAGACTTTAGTTGT TTGGCATCGTAGTGAGTTGAACATTCAATGTCTTGTAGGTTTGAAGATTGATGGTTCACATTTCC GATTATATCTTTGAACTCTGCACTATAAATATTCAAACATGTGCTTATTTATGCCGTTTGAACAA ATTCTCTGAAATTGTGATCTACGCTCTACACAAATGTGATGCTTTTTTTTAAATCAAAATTGCGA ATTCAAAAAATGTAGTGAATGTAAAAAAATTTTATTTTTGTTTTTGAACATTTATAATATGCAGG TATTGAATGCTGAAGTTAAACAGTTTCAAAAACAAAGCTTATTATATGGATCACTACATTTTAAA TTAATTGTATTATAAGAATTGTTGGAAAAGATAGTCTTTTAATTA Right flanking sequence: Indices 8076754 -- 8077253 GATAGTTTGGTTGTTGATGTTTTCATAAAAAGTATTTAACTAGTATAAAATAGCTGGAATCTTTT TTTGTATTTTGTATATTAAACATTTTTTATAAATCCAGGAATAACCGATATACGAGTTATTAAAG ATTTTCGAGATATTCATACAAATATCTAATTGTAAGATACAATAATTGTATACCTAGCAATATAC TTTTTTGGCCAAGAAAATTTTATTGCTGGCCATTTTGATCATTCCCAAAAAAACTTACTTTTAAA ACAATAAATTATGATCGACTTGTTCAAATTTTTCTAAAATAAAAAATATATACTGTTTCATATTA AGTTGCAATTACAAACTGTTCAATTGGTTCCTATGAGTTTCGTTGCCCAAAAGGCTTAAAATTTT TTAATAACGAAACCCACAAACTAAAATTATTTTCAACATCTAATTTCAATGAATTCTAGGAAAAC TCGTTTCAACTACCGTAATCCAGCCGCTTTGTCTATTTATACACA Found at i:8076830 original size:7 final size:7 Alignment explanation
Indices: 8076818--8076832 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8076808 TGGAATCTTT 8076818 TTTTGTA 1 TTTTGTA 8076825 TTTTGTA 1 TTTTGTA 8076832 T 1 T 8076833 ATTAAACATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73 Consensus pattern (7 bp): TTTTGTA Left flanking sequence: Indices 8076318 -- 8076817 CGGATTGATGCAGAAATTGTTGAGTGTCTATCAGACTTTAGTTGTTTGGCATCGTAGTGAGTTGA ACATTCAATGTCTTGTAGGTTTGAAGATTGATGGTTCACATTTCCGATTATATCTTTGAACTCTG CACTATAAATATTCAAACATGTGCTTATTTATGCCGTTTGAACAAATTCTCTGAAATTGTGATCT ACGCTCTACACAAATGTGATGCTTTTTTTTAAATCAAAATTGCGAATTCAAAAAATGTAGTGAAT GTAAAAAAATTTTATTTTTGTTTTTGAACATTTATAATATGCAGGTATTGAATGCTGAAGTTAAA CAGTTTCAAAAACAAAGCTTATTATATGGATCACTACATTTTAAATTAATTGTATTATAAGAATT GTTGGAAAAGATAGTCTTTTAATTATTCACCACATTTCACCAATTTGATAGTTTGGTTGTTGATG TTTTCATAAAAAGTATTTAACTAGTATAAAATAGCTGGAATCTTT Right flanking sequence: Indices 8076833 -- 8077332 ATTAAACATTTTTTATAAATCCAGGAATAACCGATATACGAGTTATTAAAGATTTTCGAGATATT CATACAAATATCTAATTGTAAGATACAATAATTGTATACCTAGCAATATACTTTTTTGGCCAAGA AAATTTTATTGCTGGCCATTTTGATCATTCCCAAAAAAACTTACTTTTAAAACAATAAATTATGA TCGACTTGTTCAAATTTTTCTAAAATAAAAAATATATACTGTTTCATATTAAGTTGCAATTACAA ACTGTTCAATTGGTTCCTATGAGTTTCGTTGCCCAAAAGGCTTAAAATTTTTTAATAACGAAACC CACAAACTAAAATTATTTTCAACATCTAATTTCAATGAATTCTAGGAAAACTCGTTTCAACTACC GTAATCCAGCCGCTTTGTCTATTTATACACAAAGAATACACTGTTGTCAGTTATCTTTTTTATAG AGAATTTCCTACCTAAAAACAAACCTCAAGGCTTTTCTATCAACT Found at i:8077885 original size:9 final size:9 Alignment explanation
Indices: 8077871--8077888 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 8077861 AAAAGGGGAA 8077871 ACAGAGTTT 1 ACAGAGTTT 8077880 ACAGAGTTT 1 ACAGAGTTT 8077889 TACCTTTTAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33 Consensus pattern (9 bp): ACAGAGTTT Left flanking sequence: Indices 8077371 -- 8077870 AAGTCGAGTCTATCATCTCTGTGTGTGTGTAACTTTTGAATACAGGTCAGGTTGCCCATGGGTGC AAATTGTGTAATTTCAAGGTTATATGACGAATTCCAAAATATAAAATCGTTTCTGTTTTTATAAA ATAATCCTATTAATCCAAGTCGGTATTAGTTTTTGATTTATTTTGTGTAGTTGCTTGTTTGGACT ACTACTAAATAAATAAACATATTTTAAAAATCCTTGAAAGAAATCCTATAGTTAGCAAACTTATA AGAAAAGTGACGCCAAAATCACTATTCGTGTAATAGAGACCACGTGAAGACGCGTTAATTACAGG ATGCATGATCTTCATTAAAAATTAAACAACATTTTGATTGCATGCGTCTTAAAGATACTAGAAAC AATAATAAAATAATTGAAATTTTCAAATCTTTGCACTGCATAATTTAAAACATGCTTCTCCAACG CTTATATAGTGCTAAATCGAAGTGTTTTAGTGTAAAAAAGGGGAA Right flanking sequence: Indices 8077889 -- 8078388 TACCTTTTACAATGTTGGAAATCAAAATTTTTTTTCTAGCTACAAACCTTTTCCCTGTTACAAAC CCTGTTATATTTGCGTTTCAACTTTATTTTTTTAAAGGTGGTGTAGTCGAATTTTTTATTGCTTT ATTAGACTCAAAATTGTATGAAAACAACGAATTTCATAATGAAACTTTTTGAAAACTTTTCAAAA CAAAAAAGTTATGACGGCTCAAAAAATGGCCTAAAATTAGTTAAATATTGAAATTTGACCGACTT GTCAGTGTCGTAGCGGCTGGAAACAACTTTTTTTGAAATCACCGTCAAATTTTGGGTATATGGTG CAATTATCTTGGGTTTCATTTCGATGGACGGCGAGATTTCTAAGGTTTTTTTTACCAAATCTCGC AGTCCATCGAATTCAAAATTCTGTTTTTGATTGTTAATTTGAGAATGTTTTCAATATATTAGAGG TTTTTCAAAATACATCACATATAACAGTATTAATTAAACAAAGTT Found at i:8078451 original size:8 final size:8 Alignment explanation
Indices: 8078436--8078451 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 8078426 TCGAATTCAG * 8078436 GAATTTAT 1 GAAATTAT 8078444 GAAATTAT 1 GAAATTAT 8078452 AGTTACCTTC Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44 Consensus pattern (8 bp): GAAATTAT Left flanking sequence: Indices 8077936 -- 8078435 CTTTTCCCTGTTACAAACCCTGTTATATTTGCGTTTCAACTTTATTTTTTTAAAGGTGGTGTAGT CGAATTTTTTATTGCTTTATTAGACTCAAAATTGTATGAAAACAACGAATTTCATAATGAAACTT TTTGAAAACTTTTCAAAACAAAAAAGTTATGACGGCTCAAAAAATGGCCTAAAATTAGTTAAATA TTGAAATTTGACCGACTTGTCAGTGTCGTAGCGGCTGGAAACAACTTTTTTTGAAATCACCGTCA AATTTTGGGTATATGGTGCAATTATCTTGGGTTTCATTTCGATGGACGGCGAGATTTCTAAGGTT TTTTTTACCAAATCTCGCAGTCCATCGAATTCAAAATTCTGTTTTTGATTGTTAATTTGAGAATG TTTTCAATATATTAGAGGTTTTTCAAAATACATCACATATAACAGTATTAATTAAACAAAGTTTT CAACTTCAAAGCCTTCCTAGCATTTTTCTGAAATATCGAATTCAG Right flanking sequence: Indices 8078452 -- 8078951 AGTTACCTTCCACTATCATGTCCAATACAAACATTCACACATCTTCTCATTCTATTTCATTGTCG GTAGTCCAAAAGTTGTTCTTTTTTGGTCTTTTCCAGTGGTCAAATACAATGTGGGCGGCGCTACG AAGGCGTCGAGAAGTGATGTCAATGAAATACTGTAGGCGTTGTGTATATATTGAGAAGTGTCTCT GAATTTACGAAAACTCAAGTTTCATTTCATTTTCCTCTGATTTCGACAGTCGAATTCAAAAATGG GTAAGCCTTTCAAATTTCCAGTCAAAACCAAAAAATTAACTATGATTTTCAGGATTCCTTCTTGG GGTTGTTCGGTCGCTTCGCCAACGTCGCGAGGCCGCAGATTCCGAGAATAGTAGTTTCAAAGAAG CAACTCATAAGGATTTGTCTTCATCTTTTGTTGAGCATCAGATGCACATTGCTCAACTCTCCGAA AGATTCTTTCACTCAAAAATTGATATCGTTGAACCAAAAAAATCG Found at i:8078548 original size:10 final size:10 Alignment explanation
Indices: 8078529--8078548 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 8078519 AGTCCAAAAG * 8078529 TTGTTCTTTT 1 TTGGTCTTTT 8078539 TTGGTCTTTT 1 TTGGTCTTTT 8078549 CCAGTGGTCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.10, G:0.15, T:0.75 Consensus pattern (10 bp): TTGGTCTTTT Left flanking sequence: Indices 8078029 -- 8078528 AAATTGTATGAAAACAACGAATTTCATAATGAAACTTTTTGAAAACTTTTCAAAACAAAAAAGTT ATGACGGCTCAAAAAATGGCCTAAAATTAGTTAAATATTGAAATTTGACCGACTTGTCAGTGTCG TAGCGGCTGGAAACAACTTTTTTTGAAATCACCGTCAAATTTTGGGTATATGGTGCAATTATCTT GGGTTTCATTTCGATGGACGGCGAGATTTCTAAGGTTTTTTTTACCAAATCTCGCAGTCCATCGA ATTCAAAATTCTGTTTTTGATTGTTAATTTGAGAATGTTTTCAATATATTAGAGGTTTTTCAAAA TACATCACATATAACAGTATTAATTAAACAAAGTTTTCAACTTCAAAGCCTTCCTAGCATTTTTC TGAAATATCGAATTCAGGAATTTATGAAATTATAGTTACCTTCCACTATCATGTCCAATACAAAC ATTCACACATCTTCTCATTCTATTTCATTGTCGGTAGTCCAAAAG Right flanking sequence: Indices 8078549 -- 8079048 CCAGTGGTCAAATACAATGTGGGCGGCGCTACGAAGGCGTCGAGAAGTGATGTCAATGAAATACT GTAGGCGTTGTGTATATATTGAGAAGTGTCTCTGAATTTACGAAAACTCAAGTTTCATTTCATTT TCCTCTGATTTCGACAGTCGAATTCAAAAATGGGTAAGCCTTTCAAATTTCCAGTCAAAACCAAA AAATTAACTATGATTTTCAGGATTCCTTCTTGGGGTTGTTCGGTCGCTTCGCCAACGTCGCGAGG CCGCAGATTCCGAGAATAGTAGTTTCAAAGAAGCAACTCATAAGGATTTGTCTTCATCTTTTGTT GAGCATCAGATGCACATTGCTCAACTCTCCGAAAGATTCTTTCACTCAAAAATTGATATCGTTGA ACCAAAAAAATCGAAGGGATTGACAAAACAAGAAGCTGCTCAAAAACTGAAAACCGACGGAAAAA ATGCTCTTTCGCCACCAAAAACTATCAGCAATATGGAGCTGTTTG Found at i:8079280 original size:9 final size:9 Alignment explanation
Indices: 8079255--8079280 Score: 38 Period size: 9 Copynumber: 2.9 Consensus size: 9 8079245 TACGTCGGAA 8079255 TTTTCATCG 1 TTTTCATCG ** 8079264 TTGCCATCG 1 TTTTCATCG 8079273 TTTTCATC 1 TTTTCATC 8079281 ATGTGTGTTG Statistics Matches: 13, Mismatches: 4, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.12, C:0.27, G:0.12, T:0.50 Consensus pattern (9 bp): TTTTCATCG Left flanking sequence: Indices 8078755 -- 8079254 GATTTTCAGGATTCCTTCTTGGGGTTGTTCGGTCGCTTCGCCAACGTCGCGAGGCCGCAGATTCC GAGAATAGTAGTTTCAAAGAAGCAACTCATAAGGATTTGTCTTCATCTTTTGTTGAGCATCAGAT GCACATTGCTCAACTCTCCGAAAGATTCTTTCACTCAAAAATTGATATCGTTGAACCAAAAAAAT CGAAGGGATTGACAAAACAAGAAGCTGCTCAAAAACTGAAAACCGACGGAAAAAATGCTCTTTCG CCACCAAAAACTATCAGCAATATGGAGCTGTTTGTTCGTCAATTTAAGTCAGTTTATTATCTATT TAAATTTTAAAACATTATCAGAAAATTTTAGAAATCTTCTTTGGGTTCTCATGTTCGGTGCAGCT GCGCTTTGTTTCTTGACCTACATCTATGATCCAACGTGAGTCGTTAAAAACTAAAACAAAAAGCG AATATAAATTAAATTTTAGCGATGCTTTGAATCTGTACGTCGGAA Right flanking sequence: Indices 8079281 -- 8079780 ATGTGTGTTGTCTCGTTCTTTGAAGAGAAAAAGGGAGTCGAAGTGGTTCGAGCTTTCCAAACACT TATGCCAACTTCTTGTCAAGTGATAAGAGATGGAAAAGAGGTTAGTTTTTTTTTTCTGATGAGAT ATTAATTGACAAAAATTTGAAAGTCTTGAATTTTTTGTACGGAGAATGCGACATTTATTAGATAT TTTATAAACTTCACTTTGTCACTTTGAAGTATTCTCCAAGAACATACCAAACCTCATTATTTTCA GATACTCTTAAATCCCGAGGAGCTTGTCGTGGGTGATGTTGTAGTTGTTCGTTCTGGTTGCAAAG TCCCAGCTGATATGAGAATCATCGCTTGCACTGATTTCTTCTTAGAAACAAGTTCAATCACCGGA GAAGCTGAACCATTGGAGTTCCATTCCAAAACTGCCGACGCTAAAACTTCAATTTTCGAATCTTA CAACATTGCTTTTAATGGATCATTCTGTGTTGACGGAGAGGGATA Found at i:8079499 original size:8 final size:8 Alignment explanation
Indices: 8079486--8079501 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 8079476 TTTATAAACT 8079486 TCACTTTG 1 TCACTTTG 8079494 TCACTTTG 1 TCACTTTG 8079502 AAGTATTCTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50 Consensus pattern (8 bp): TCACTTTG Left flanking sequence: Indices 8078986 -- 8079485 TGAAAACCGACGGAAAAAATGCTCTTTCGCCACCAAAAACTATCAGCAATATGGAGCTGTTTGTT CGTCAATTTAAGTCAGTTTATTATCTATTTAAATTTTAAAACATTATCAGAAAATTTTAGAAATC TTCTTTGGGTTCTCATGTTCGGTGCAGCTGCGCTTTGTTTCTTGACCTACATCTATGATCCAACG TGAGTCGTTAAAAACTAAAACAAAAAGCGAATATAAATTAAATTTTAGCGATGCTTTGAATCTGT ACGTCGGAATTTTCATCGTTGCCATCGTTTTCATCATGTGTGTTGTCTCGTTCTTTGAAGAGAAA AAGGGAGTCGAAGTGGTTCGAGCTTTCCAAACACTTATGCCAACTTCTTGTCAAGTGATAAGAGA TGGAAAAGAGGTTAGTTTTTTTTTTCTGATGAGATATTAATTGACAAAAATTTGAAAGTCTTGAA TTTTTTGTACGGAGAATGCGACATTTATTAGATATTTTATAAACT Right flanking sequence: Indices 8079502 -- 8080001 AAGTATTCTCCAAGAACATACCAAACCTCATTATTTTCAGATACTCTTAAATCCCGAGGAGCTTG TCGTGGGTGATGTTGTAGTTGTTCGTTCTGGTTGCAAAGTCCCAGCTGATATGAGAATCATCGCT TGCACTGATTTCTTCTTAGAAACAAGTTCAATCACCGGAGAAGCTGAACCATTGGAGTTCCATTC CAAAACTGCCGACGCTAAAACTTCAATTTTCGAATCTTACAACATTGCTTTTAATGGATCATTCT GTGTTGACGGAGAGGGATATGGTATCATCATTCGTACCGGAGAGAACACTGTTATCGGACAAATT GCTTCTTTGACTCTTGGACAAAAGGACAAGAAATGCAAATTTGAGACTGAAATCGAGCGTTTCGT TCAATTTATCACTGTTATGGCAATCACCATGGCAACTGTCATCTTCACAATTGGACTTCTTGTTA ATGGGGGAAATGACGTCATTCGTCTCTTTGTTACTGGTTTCCTTA Found at i:8084722 original size:7 final size:7 Alignment explanation
Indices: 8084710--8084725 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 8084700 ATTTCTTGAA 8084710 TGATTTT 1 TGATTTT 8084717 TGATTTT 1 TGATTTT 8084724 TG 1 TG 8084726 GGCTGTTTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69 Consensus pattern (7 bp): TGATTTT Left flanking sequence: Indices 8084210 -- 8084709 ACATTGGGAAACAGCAAAAGCAGCAAACTGAATGTAATGGATTACTCGATAAAGCATCATAGAGT CGTACAAAAACACCCTAATACTAATTTTTGGAAGTTAATTTATACTCCAATCAGAAAGAGGCGTT TTTAAGTTACTGGAAGAATGGAGGAAGTGTAGTCTTGAATTGAATTGTATTAATATTGAAATCAG CTGCTCCGGTTGTCTGTGATTCATTCTTTCAAAGGAAGTGAAGAAAATGGGAGGAGTGTCTGTCT CAAATCACATACTGATGCACAGAACAGATTAAATGAAGTAAAAGAATGGTGTGTCGGCTCGGAAA AAAAAAACAAAAAAGGTAGAAAACAGAGTAACATTGTTTTGATGACTTTACACTTTTTTGCAGAA ATTCGAATTATTAATTCTGAATGATTCTTTTTGTAGAAACTAGAGATTAGAATAACTTGGACACC TGGCCATTGATGTACCCGATGGAAATTGCAGCCAAATTTCTTGAA Right flanking sequence: Indices 8084726 -- 8085225 GGCTGTTTCAAATAATATCAAACTGAAAAACCACAAATTCATAGATGTCTAAAATATTTTAAAAT CACATTTTTTAAACACGAAATCCGTAATCATCATACCGTTTCTGATTTGTTGTTTTTTAATGGAT GTTTCTGAAAGTGACAAATTATAATCCTATTTATTAATATTTTCAAAACAAGCCAACTAAAGTAT TTCGAGTACAATTCTTATTATTCCGTGATTGGGAGTGATGTTGCAGGTGATTCTCGATAATTGGG AAACATTGGGAAACTGATGAAGTGCATTCAAAAATTTCAGATGTGTCGTATTTCTAAGGAAGTTA TCAGACAAATTCCAGAAAGGAATTTATTAGGAAACTTGCTTTACAAATTTTACCAGTTGAAGCAA CACAAAGAATTTTCAATCTGTGGAAATTCAAACTTTGATGAACATCCGATCTCTAAATTATTATT TTTCTTTCAGATTAATATCATCATCACACTACAAATACACATTAT Found at i:8084995 original size:10 final size:10 Alignment explanation
Indices: 8084980--8084999 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 8084970 ATTCTCGATA 8084980 ATTGGGAAAC 1 ATTGGGAAAC 8084990 ATTGGGAAAC 1 ATTGGGAAAC 8085000 TGATGAAGTG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20 Consensus pattern (10 bp): ATTGGGAAAC Left flanking sequence: Indices 8084480 -- 8084979 ACTGATGCACAGAACAGATTAAATGAAGTAAAAGAATGGTGTGTCGGCTCGGAAAAAAAAAACAA AAAAGGTAGAAAACAGAGTAACATTGTTTTGATGACTTTACACTTTTTTGCAGAAATTCGAATTA TTAATTCTGAATGATTCTTTTTGTAGAAACTAGAGATTAGAATAACTTGGACACCTGGCCATTGA TGTACCCGATGGAAATTGCAGCCAAATTTCTTGAATGATTTTTGATTTTTGGGCTGTTTCAAATA ATATCAAACTGAAAAACCACAAATTCATAGATGTCTAAAATATTTTAAAATCACATTTTTTAAAC ACGAAATCCGTAATCATCATACCGTTTCTGATTTGTTGTTTTTTAATGGATGTTTCTGAAAGTGA CAAATTATAATCCTATTTATTAATATTTTCAAAACAAGCCAACTAAAGTATTTCGAGTACAATTC TTATTATTCCGTGATTGGGAGTGATGTTGCAGGTGATTCTCGATA Right flanking sequence: Indices 8085000 -- 8085499 TGATGAAGTGCATTCAAAAATTTCAGATGTGTCGTATTTCTAAGGAAGTTATCAGACAAATTCCA GAAAGGAATTTATTAGGAAACTTGCTTTACAAATTTTACCAGTTGAAGCAACACAAAGAATTTTC AATCTGTGGAAATTCAAACTTTGATGAACATCCGATCTCTAAATTATTATTTTTCTTTCAGATTA ATATCATCATCACACTACAAATACACATTATTACAGAGAACGCTTGTCGTGCTAATTCCATAACT ACAATTGATATCACTAATTTATTTCATTCAGTTTTTACAATACCATCATTTTGTACTATTCGAAA TTATTTTTTACAACAGCTATACTTGTCAAAATAAAGACTGTGTTCGTTTTCAAATACTTCGGGAC AGTATTTCAAATTATCACTACGCGTTTTGGAAAGGTTTAATGCGAGTTATAGTGATAATTGGTTC AATTGGCGAGTACACAACATGATAATGCTGAAATACTGAATAACC Found at i:8085650 original size:8 final size:9 Alignment explanation
Indices: 8085637--8085655 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 8085627 TTTGATCAAC 8085637 ATCTCA-TG 1 ATCTCAGTG 8085645 ATCTCAGTG 1 ATCTCAGTG 8085654 AT 1 AT 8085656 TTCTGCTTAA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 6 0.60 9 4 0.40 ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37 Consensus pattern (9 bp): ATCTCAGTG Left flanking sequence: Indices 8085137 -- 8085636 GGAAATTCAAACTTTGATGAACATCCGATCTCTAAATTATTATTTTTCTTTCAGATTAATATCAT CATCACACTACAAATACACATTATTACAGAGAACGCTTGTCGTGCTAATTCCATAACTACAATTG ATATCACTAATTTATTTCATTCAGTTTTTACAATACCATCATTTTGTACTATTCGAAATTATTTT TTACAACAGCTATACTTGTCAAAATAAAGACTGTGTTCGTTTTCAAATACTTCGGGACAGTATTT CAAATTATCACTACGCGTTTTGGAAAGGTTTAATGCGAGTTATAGTGATAATTGGTTCAATTGGC GAGTACACAACATGATAATGCTGAAATACTGAATAACCATTTTGCTCCCATTCTTAAAAACAGTA ACACTTTGAGAATTCCGATCGGAAACTACAATAAAACAACTGAGACAAACGTCTGTAAATTTCTA TTTTACTGAACTTTAGTTGTAGTTCTCAAAATGCGTTTGATCAAC Right flanking sequence: Indices 8085656 -- 8086155 TTCTGCTTAAAAACAATGAGAGGGTGACGTAAACCTTATGTTCATTCATTTGGACTATTAAGGGG AAGGGGGTAAACGTTTTGGGTCTCCCAGAAATTTGAAAATGTTATTGCTTTTAAAAACTATAACA GCTTTTTGAATTTAATAGAACTGCTATGAATGACAACGAATAGTTCAAACTATATGAACTCACTA TCAGTTCCTGAATTCCTTAGGTCAGTGTACTTCTCAAGGTTTGAAATTATTTGAATAATAGGAAG TTATTTAATTCCTTAGCTTGCTTTCAGTTATTTGGCTTACCTAAGCTTTCTGAACACAATGAAAT CTTTTCAAATAGATGTTTTTATTAGTTGAGTTCATAATCAGAAAGTGTATTTGACGTCAATAGAA TAAAATTCTTCCTGACCAAAAAAAAAAGATTAATGGGTGATCACGGCTGAGAGGTTAAAATGTTG TCTCTTTTGAACATGATACATGTAGAAATTTTAAGGTTTTGTATT Found at i:8088006 original size:9 final size:9 Alignment explanation
Indices: 8087985--8088006 Score: 37 Period size: 8 Copynumber: 2.6 Consensus size: 9 8087975 TCTTTTTATC 8087985 AAATTTTTT 1 AAATTTTTT 8087994 -AATTTTTT 1 AAATTTTTT 8088002 AAATT 1 AAATT 8088007 CGAATTTATT Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 8 8 0.67 9 4 0.33 ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64 Consensus pattern (9 bp): AAATTTTTT Left flanking sequence: Indices 8087485 -- 8087984 ACTGAACATGCGAATTACATCTATAATTATAATGAATTTACCAGTTAAGGTAAAGGAGCATTTAC CAGAATACTGTCCATGAACATCTCCGCAAACTTTAATTGGTGCATCAACCTCAAGCATCACTGGC TGATCCAAAAAACTCTTCTTTGCCATTTGGCATAATTGGATCAGTTCATGCTCTTTCACCGTTTT CGTCAAACTTTTCTCGGGATGTCCAACCGACAAAACTTTTAGAATCAACTCGTCAATATCTAGTC TAGCAGCAAAATTTTCTAAAAGCAAGAAAAATGAAATCATTGTCAAAAGTCTGTGCATACCGTCT AAACTTCTATAACCTGAAGCCATTGTTGCCGATTGTAAATAATTGGAAGATTAGAAGTTAAAATA AATGAAAATAAAAATACATTCGATGTAAATCAATAAAAGAATATAACATCAGCATCAAAAAATTT AAAAGATAAGGGATATCACGTTAATATGATGATGTTCTTTTTATC Right flanking sequence: Indices 8088007 -- 8088506 CGAATTTATTCATTCGATAGTCGCAATAGCAATTGAATAAAATGATAAAAAGAAAGATGTTTTGT GAATGGGACTACAAGCACAATTTATTGGTATTAATGTAGAATGATGTGCCGACTTTGTTGGAACA GATTTGTGGGTATTCACACTATGTTTCTCAGTTAAATCTCCATTTTAACAATGCTTTCTGGCAAC TTCTACCAGAAAACAAAACTAATATTGGCCCAAAGTTTGACAGAAGTTTCATGTAGCATTTGAAA AAAAAACACATCAAACGTATATAAAGGAGTGGGCGACCAAGACGAAATATGTTTTAAGCTTCCCG TATTCGTAATTGATATAGTGCCTTTTGACTTCAGTGTAAGATCTTTTTATTTTAACTATTCATTA ATTCAATTAATTGAAGCCGATAATGGAAAACCTGACAAACAGTGAACGATTTGACCTTATTCGAA TTAAATTTTATCATCATCCATTTGAAGTATCCCCATATGACTTGT Found at i:8088405 original size:9 final size:8 Alignment explanation
Indices: 8088389--8088408 Score: 31 Period size: 9 Copynumber: 2.4 Consensus size: 8 8088379 TATTTTAACT 8088389 ATTCATTA 1 ATTCATTA 8088397 ATTCAATTA 1 ATTC-ATTA 8088406 ATT 1 ATT 8088409 GAAGCCGATA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 4 0.36 9 7 0.64 ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50 Consensus pattern (8 bp): ATTCATTA Left flanking sequence: Indices 8087889 -- 8088388 TACATTCGATGTAAATCAATAAAAGAATATAACATCAGCATCAAAAAATTTAAAAGATAAGGGAT ATCACGTTAATATGATGATGTTCTTTTTATCAAATTTTTTAATTTTTTAAATTCGAATTTATTCA TTCGATAGTCGCAATAGCAATTGAATAAAATGATAAAAAGAAAGATGTTTTGTGAATGGGACTAC AAGCACAATTTATTGGTATTAATGTAGAATGATGTGCCGACTTTGTTGGAACAGATTTGTGGGTA TTCACACTATGTTTCTCAGTTAAATCTCCATTTTAACAATGCTTTCTGGCAACTTCTACCAGAAA ACAAAACTAATATTGGCCCAAAGTTTGACAGAAGTTTCATGTAGCATTTGAAAAAAAAACACATC AAACGTATATAAAGGAGTGGGCGACCAAGACGAAATATGTTTTAAGCTTCCCGTATTCGTAATTG ATATAGTGCCTTTTGACTTCAGTGTAAGATCTTTTTATTTTAACT Right flanking sequence: Indices 8088409 -- 8088908 GAAGCCGATAATGGAAAACCTGACAAACAGTGAACGATTTGACCTTATTCGAATTAAATTTTATC ATCATCCATTTGAAGTATCCCCATATGACTTGTATGTTTGTGAAATTTTTGAAACCTTCATAGAA GATTTTGTCTCTTTTCTCAAAACATAATTTCTGAATCGGTCGATTATAAAAATTGCAATGAGAGG ATCTGAAGCAGGATATAAACTGCACGTGACTCCGACAATATTGATGTATTTTCCAACTTCAATCT CAAAAATCGGAAGAATGAAGACGAGTCCAACTGGGATGTACTGCGTAAAACATGGTAGAAGAGTT TGAAGAGCAAGACTCCAAAATAATTGTTTGCTTAGGGACCGTGTCTTCTTGCTCATTTGAACAGA CGCGTCGTGAAGCTTTTTGTACGTTTTGAAAGCGCAAAATAAACAGGTGGTGAAGCAAGTACTCT GAAAATATTTTTTTTATATTAAAACAAACATTTTAAACATGAATA Found at i:8088526 original size:9 final size:9 Alignment explanation
Indices: 8088510--8088527 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 8088500 GACTTGTATG 8088510 TTTGTGAAA 1 TTTGTGAAA * 8088519 TTTTTGAAA 1 TTTGTGAAA 8088528 CCTTCATAGA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50 Consensus pattern (9 bp): TTTGTGAAA Left flanking sequence: Indices 8088010 -- 8088509 ATTTATTCATTCGATAGTCGCAATAGCAATTGAATAAAATGATAAAAAGAAAGATGTTTTGTGAA TGGGACTACAAGCACAATTTATTGGTATTAATGTAGAATGATGTGCCGACTTTGTTGGAACAGAT TTGTGGGTATTCACACTATGTTTCTCAGTTAAATCTCCATTTTAACAATGCTTTCTGGCAACTTC TACCAGAAAACAAAACTAATATTGGCCCAAAGTTTGACAGAAGTTTCATGTAGCATTTGAAAAAA AAACACATCAAACGTATATAAAGGAGTGGGCGACCAAGACGAAATATGTTTTAAGCTTCCCGTAT TCGTAATTGATATAGTGCCTTTTGACTTCAGTGTAAGATCTTTTTATTTTAACTATTCATTAATT CAATTAATTGAAGCCGATAATGGAAAACCTGACAAACAGTGAACGATTTGACCTTATTCGAATTA AATTTTATCATCATCCATTTGAAGTATCCCCATATGACTTGTATG Right flanking sequence: Indices 8088528 -- 8089027 CCTTCATAGAAGATTTTGTCTCTTTTCTCAAAACATAATTTCTGAATCGGTCGATTATAAAAATT GCAATGAGAGGATCTGAAGCAGGATATAAACTGCACGTGACTCCGACAATATTGATGTATTTTCC AACTTCAATCTCAAAAATCGGAAGAATGAAGACGAGTCCAACTGGGATGTACTGCGTAAAACATG GTAGAAGAGTTTGAAGAGCAAGACTCCAAAATAATTGTTTGCTTAGGGACCGTGTCTTCTTGCTC ATTTGAACAGACGCGTCGTGAAGCTTTTTGTACGTTTTGAAAGCGCAAAATAAACAGGTGGTGAA GCAAGTACTCTGAAAATATTTTTTTTATATTAAAACAAACATTTTAAACATGAATAAGATGATTT TTTAAAAGAAAACTAATTTTTTTGAAAAATTGGAAAATTGTGTTTTTAAAATTTTTTCTAACTTG GTCTGTTCTTAAACTGCAAAGACATTCTAATGTCAGAGATATTCT Found at i:8088956 original size:8 final size:8 Alignment explanation
Indices: 8088939--8088957 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 8088929 ACTAATTTTT 8088939 TTGAAAAA 1 TTGAAAAA * 8088947 TTGGAAAA 1 TTGAAAAA 8088955 TTG 1 TTG 8088958 TGTTTTTAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32 Consensus pattern (8 bp): TTGAAAAA Left flanking sequence: Indices 8088439 -- 8088938 TGAACGATTTGACCTTATTCGAATTAAATTTTATCATCATCCATTTGAAGTATCCCCATATGACT TGTATGTTTGTGAAATTTTTGAAACCTTCATAGAAGATTTTGTCTCTTTTCTCAAAACATAATTT CTGAATCGGTCGATTATAAAAATTGCAATGAGAGGATCTGAAGCAGGATATAAACTGCACGTGAC TCCGACAATATTGATGTATTTTCCAACTTCAATCTCAAAAATCGGAAGAATGAAGACGAGTCCAA CTGGGATGTACTGCGTAAAACATGGTAGAAGAGTTTGAAGAGCAAGACTCCAAAATAATTGTTTG CTTAGGGACCGTGTCTTCTTGCTCATTTGAACAGACGCGTCGTGAAGCTTTTTGTACGTTTTGAA AGCGCAAAATAAACAGGTGGTGAAGCAAGTACTCTGAAAATATTTTTTTTATATTAAAACAAACA TTTTAAACATGAATAAGATGATTTTTTAAAAGAAAACTAATTTTT Right flanking sequence: Indices 8088958 -- 8089457 TGTTTTTAAAATTTTTTCTAACTTGGTCTGTTCTTAAACTGCAAAGACATTCTAATGTCAGAGAT ATTCTATGGTAAAATTATTGTATCTTACCATAATGGGGCAACTTAACAGAGCCCCAAACAAATCA GTATATCGAAGTAACAGCCTACCATCAACTTGATGTGTCTGTAATATTATTTTCCAAAAAAATAA TTTTTAAAACATTTTTAACTTACATAATACAACGGAGCAATGAATGCAATCTTATCCATATCTTC TTCATACAACTCTTTCACTATTTTTTGAAAGAAATCTTTTTTCAGTTGAATAGGTCTGTAGTTGA CATACATTGAAATGGACCAGATTATAAACAACGTGAAGGGTGGAACAAATAGAGAAAATATATTA TTTCCTTTAAAAAACTTCAGGTGTTGTGATCTGAATAATTTTTAAAAAAATTTAAGGAGAAAGCA CATTGTGGAAATATTACCTGCAAACGGCAATGTATCGAAAAATGA Found at i:8090468 original size:7 final size:7 Alignment explanation
Indices: 8090456--8090470 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8090446 TATAAAAAAA 8090456 CTTTTTG 1 CTTTTTG 8090463 CTTTTTG 1 CTTTTTG 8090470 C 1 C 8090471 AATTATAGCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.20, G:0.13, T:0.67 Consensus pattern (7 bp): CTTTTTG Left flanking sequence: Indices 8089956 -- 8090455 AAATAAATGAGTGAAATGCAATAATGATAATTATGCTTCTTGTCTCTACAAATGCTAATACCAAA ACAAAGATCTTAGCTTTTCTTTTAGTCATGATAATGAAATGCCTATCTAATAAATGAAAATATCA ATAAGTCAGTTAACAGTGTCTTCTGTTTTCTTAATGACGTTTTTATATTTCCCAGTTAAAATGCT ATCAATGCAGATATCTTAATTGAGAATAAACAGTTTTCAAGCAATATATTTATTACAAAGAAAAC AAAGCACCCTGTTTTGTAAGGTTTCGAAGTGCCTTTTTATTTTTGACTATTCCAGTAATTCACAC AGTGCCGGGGTTATGTACCATTTAGCCGAGTATTATTAAATTTTATTTCGGACATTTATAACACG TCTCAAAAAATTTTGTATCTGAAGACACAACATGCACGTCTTTTTGGAAGAAAATAGTTTTCATT TAAAAAATTAAACTAAGAAATAACTTGCACAGGTATATAAAAAAA Right flanking sequence: Indices 8090471 -- 8090970 AATTATAGCTAAGGTAATTTCGGGGAAAGAAATCTAAAGTATTTATATTATTTTTCCAATAGATA ATCAACAAGTATTCATCAAGTTCTCTAGTAAATCTATGGCAGTGTACCAAAAAACGTACGATACG TTCCTGGTAGGTGGTCAAACTTTAAGTATGTTCCTGATAATGATCATTCCATAAATTCTATCATC AGCTTCCTTTAGATGAAAAATTGTTTTTTGCATAACTGAATCCGCATGGTAAAATTAGTAACCCG TTTCCAACTGGTGCCATTTCAATTTCTTTCGAAAGGTTCGACTGCATAAATACATTTTTACAACG AAGAAAACAAAAAAGGCAAAATAATGCAAGTTATTCAACAATTATTCAATTCGTCTTTTTATTAG TTTTTTTATGACCGACTTTTAACTTGTGAAAAATACACTTTTATATAAATATAAAAGCGTCTGCG AAAACTTGCAACTGGGTGCTATCTGTTTCATAGTTAACTTTAAAC Found at i:8091129 original size:7 final size:7 Alignment explanation
Indices: 8091117--8091137 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 8091107 TTTTTTTTTG 8091117 CAAGAAT 1 CAAGAAT * 8091124 CAAGAAA 1 CAAGAAT 8091131 CAAGAAT 1 CAAGAAT 8091138 TCTTGCAAAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.62, C:0.14, G:0.14, T:0.10 Consensus pattern (7 bp): CAAGAAT Left flanking sequence: Indices 8090617 -- 8091116 AAACTTTAAGTATGTTCCTGATAATGATCATTCCATAAATTCTATCATCAGCTTCCTTTAGATGA AAAATTGTTTTTTGCATAACTGAATCCGCATGGTAAAATTAGTAACCCGTTTCCAACTGGTGCCA TTTCAATTTCTTTCGAAAGGTTCGACTGCATAAATACATTTTTACAACGAAGAAAACAAAAAAGG CAAAATAATGCAAGTTATTCAACAATTATTCAATTCGTCTTTTTATTAGTTTTTTTATGACCGAC TTTTAACTTGTGAAAAATACACTTTTATATAAATATAAAAGCGTCTGCGAAAACTTGCAACTGGG TGCTATCTGTTTCATAGTTAACTTTAAACAAATATTTTTTGTTAAGACTGTGAAAACTTATAAAC TCCAGGTTTTACATCAAATCAACAAAATTGAGGAATTTCAGTCTAGTTCCTTCAAAATAGAAGTA CGGATTGGCGTGTTCACTACAAGGCCGGCCAAAAGTTTTTTTTTG Right flanking sequence: Indices 8091138 -- 8091637 TCTTGCAAAAAAAAAACCAAGAAAAAACCAAAAAAAACCAAGAAAAATTTCTTGAAAACAGGAAT ATCTGCTTAGATAATAGATTTGCCAAAAAGTGAAAACGAATTATACTAAAGTGGCTAAATATTAT GAAATTGACATTAATAGTCAATTTCGGGTTTTAAATCAAATAGACAAATACTCACTGATTTCAAA GAAGCTATTACGTAAAAATATATTGATTCGGAAATTGCACTGTTAAGGAGTAATTAGATTTTTAC TACATTTCACGGATTTGGCAGGCATAGTTACAGAAATCACAAACTAAGCTATTTTCTGAAATAAC AAAATTCCTAAAATGAAACATTCTGAAAAATTAGAATAAAGTGAGCCAGTGAGAGATGAGACAAT GAGTATTCGCAAATCAAACATCGGACATTTTTGGTACTATAATTGCACCTGGTTCAGTTTTTTGG GACGAATGGGAAATTTCTTGCAAAAAAACTTGATTTCATTGATGT Found at i:8091172 original size:10 final size:10 Alignment explanation
Indices: 8091146--8091184 Score: 62 Period size: 10 Copynumber: 3.8 Consensus size: 10 8091136 ATTCTTGCAA 8091146 AAAAAAAACC 1 AAAAAAAACC 8091156 AAGAAAAAACC 1 AA-AAAAAACC 8091167 AAAAAAAACC 1 AAAAAAAACC * 8091177 AAGAAAAA 1 AAAAAAAA 8091185 TTTCTTGAAA Statistics Matches: 27, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 10 17 0.63 11 10 0.37 ACGTcount: A:0.79, C:0.15, G:0.05, T:0.00 Consensus pattern (10 bp): AAAAAAAACC Left flanking sequence: Indices 8090646 -- 8091145 ATTCCATAAATTCTATCATCAGCTTCCTTTAGATGAAAAATTGTTTTTTGCATAACTGAATCCGC ATGGTAAAATTAGTAACCCGTTTCCAACTGGTGCCATTTCAATTTCTTTCGAAAGGTTCGACTGC ATAAATACATTTTTACAACGAAGAAAACAAAAAAGGCAAAATAATGCAAGTTATTCAACAATTAT TCAATTCGTCTTTTTATTAGTTTTTTTATGACCGACTTTTAACTTGTGAAAAATACACTTTTATA TAAATATAAAAGCGTCTGCGAAAACTTGCAACTGGGTGCTATCTGTTTCATAGTTAACTTTAAAC AAATATTTTTTGTTAAGACTGTGAAAACTTATAAACTCCAGGTTTTACATCAAATCAACAAAATT GAGGAATTTCAGTCTAGTTCCTTCAAAATAGAAGTACGGATTGGCGTGTTCACTACAAGGCCGGC CAAAAGTTTTTTTTTGCAAGAATCAAGAAACAAGAATTCTTGCAA Right flanking sequence: Indices 8091185 -- 8091684 TTTCTTGAAAACAGGAATATCTGCTTAGATAATAGATTTGCCAAAAAGTGAAAACGAATTATACT AAAGTGGCTAAATATTATGAAATTGACATTAATAGTCAATTTCGGGTTTTAAATCAAATAGACAA ATACTCACTGATTTCAAAGAAGCTATTACGTAAAAATATATTGATTCGGAAATTGCACTGTTAAG GAGTAATTAGATTTTTACTACATTTCACGGATTTGGCAGGCATAGTTACAGAAATCACAAACTAA GCTATTTTCTGAAATAACAAAATTCCTAAAATGAAACATTCTGAAAAATTAGAATAAAGTGAGCC AGTGAGAGATGAGACAATGAGTATTCGCAAATCAAACATCGGACATTTTTGGTACTATAATTGCA CCTGGTTCAGTTTTTTGGGACGAATGGGAAATTTCTTGCAAAAAAACTTGATTTCATTGATGTTT CACTTTTTTTTAAATAATAATCAAGAATTTTGTGATAATTTTTGT Found at i:8091729 original size:8 final size:8 Alignment explanation
Indices: 8091716--8091731 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 8091706 AATAATTTCC 8091716 GAAAATTT 1 GAAAATTT 8091724 GAAAATTT 1 GAAAATTT 8091732 CCAGCAACAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (8 bp): GAAAATTT Left flanking sequence: Indices 8091216 -- 8091715 ATAGATTTGCCAAAAAGTGAAAACGAATTATACTAAAGTGGCTAAATATTATGAAATTGACATTA ATAGTCAATTTCGGGTTTTAAATCAAATAGACAAATACTCACTGATTTCAAAGAAGCTATTACGT AAAAATATATTGATTCGGAAATTGCACTGTTAAGGAGTAATTAGATTTTTACTACATTTCACGGA TTTGGCAGGCATAGTTACAGAAATCACAAACTAAGCTATTTTCTGAAATAACAAAATTCCTAAAA TGAAACATTCTGAAAAATTAGAATAAAGTGAGCCAGTGAGAGATGAGACAATGAGTATTCGCAAA TCAAACATCGGACATTTTTGGTACTATAATTGCACCTGGTTCAGTTTTTTGGGACGAATGGGAAA TTTCTTGCAAAAAAACTTGATTTCATTGATGTTTCACTTTTTTTTAAATAATAATCAAGAATTTT GTGATAATTTTTGTAAAAAAATGTGAGAGTTTTTTAATAATTTCC Right flanking sequence: Indices 8091732 -- 8092231 CCAGCAACATTTCTTCCAAAATTTCTTGCAAAATTTCTTGCAAAATTTTGGCCTTGGTTCACTAT TCCGTCGAAATTACGATTCATTGAGCACACTTTTGAGGAACATACATCAAGAACTTTAATTATCC AAGAACGTCTTTTATTATACAAAATCACAGAGAATTCACATCGTTATTCTATTTTCCAGTTGATG AAAACCCTTCCGAATTGATAGCAGAAATTTTTGAGCTTTTCGTTGTCGATGGTGACTCTTTTCTA AAAATAAAGTTACGGAACCGATCGATCATGAAAATTGCAATCAATGGATCCATGGCAGGGTATAA ACAACATGTCACTCCAACAAGATTTCCAGCTTTTCCAACTTCAACTTCAAAAAGCGGAAGAATAA AAATAAGCCCGACTGGTATATATTGAGTAAAGCATGGTAGGAGAGTTTGAAGTCCAAGAGTCAGA AATAATTGCTTATTGAGTGCTCTTGTTCTTTTGCTCATTTGAATT Found at i:8092093 original size:9 final size:9 Alignment explanation
Indices: 8092079--8092097 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 8092069 TCCAACAAGA * 8092079 TTTCCAGCT 1 TTTCCAACT 8092088 TTTCCAACT 1 TTTCCAACT 8092097 T 1 T 8092098 CAACTTCAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.32, G:0.05, T:0.47 Consensus pattern (9 bp): TTTCCAACT Left flanking sequence: Indices 8091579 -- 8092078 GTTCAGTTTTTTGGGACGAATGGGAAATTTCTTGCAAAAAAACTTGATTTCATTGATGTTTCACT TTTTTTTAAATAATAATCAAGAATTTTGTGATAATTTTTGTAAAAAAATGTGAGAGTTTTTTAAT AATTTCCGAAAATTTGAAAATTTCCAGCAACATTTCTTCCAAAATTTCTTGCAAAATTTCTTGCA AAATTTTGGCCTTGGTTCACTATTCCGTCGAAATTACGATTCATTGAGCACACTTTTGAGGAACA TACATCAAGAACTTTAATTATCCAAGAACGTCTTTTATTATACAAAATCACAGAGAATTCACATC GTTATTCTATTTTCCAGTTGATGAAAACCCTTCCGAATTGATAGCAGAAATTTTTGAGCTTTTCG TTGTCGATGGTGACTCTTTTCTAAAAATAAAGTTACGGAACCGATCGATCATGAAAATTGCAATC AATGGATCCATGGCAGGGTATAAACAACATGTCACTCCAACAAGA Right flanking sequence: Indices 8092098 -- 8092597 CAACTTCAAAAAGCGGAAGAATAAAAATAAGCCCGACTGGTATATATTGAGTAAAGCATGGTAGG AGAGTTTGAAGTCCAAGAGTCAGAAATAATTGCTTATTGAGTGCTCTTGTTCTTTTGCTCATTTG AATTGAAAAATCATTGAGCTTCTTGTAGGTTTTATAGGCACAAACAATACATGTTCCAAAACAAA TACTCTGAAAGTGTTTAGTTTTCCATTTGCATCAAGTTGGATATATTACCATAATATTGCAGCTC AAAAATGCTCCAAACAAATCAGGAAAATTGAACTGACGACTCCCATCTTCCCCTCGAGTCTGAAA ATTTGGAGCATAATAATATGAAAAGAAAAATAACAACTCACAAAATACAAAGGAGCGATAAAAGC AATTTTGTCAATATCTTCGTCATACAATTCCAAAGTCACATTTCTGAAGTAATCCTTCTTCATCT GATTCGGTCCAAAATTAATATAGATTGATGAACCCCAAATTGTGA Found at i:8092732 original size:7 final size:7 Alignment explanation
Indices: 8092720--8092736 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 8092710 ATTTTTTTTC 8092720 AAATTAA 1 AAATTAA 8092727 AAATTAA 1 AAATTAA 8092734 AAA 1 AAA 8092737 GGAGCTAATG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24 Consensus pattern (7 bp): AAATTAA Left flanking sequence: Indices 8092220 -- 8092719 CTCATTTGAATTGAAAAATCATTGAGCTTCTTGTAGGTTTTATAGGCACAAACAATACATGTTCC AAAACAAATACTCTGAAAGTGTTTAGTTTTCCATTTGCATCAAGTTGGATATATTACCATAATAT TGCAGCTCAAAAATGCTCCAAACAAATCAGGAAAATTGAACTGACGACTCCCATCTTCCCCTCGA GTCTGAAAATTTGGAGCATAATAATATGAAAAGAAAAATAACAACTCACAAAATACAAAGGAGCG ATAAAAGCAATTTTGTCAATATCTTCGTCATACAATTCCAAAGTCACATTTCTGAAGTAATCCTT CTTCATCTGATTCGGTCCAAAATTAATATAGATTGATGAACCCCAAATTGTGAAAAAGAAGAACG GTGGGATAAGCCATAGGTACACATTAATTCCTTCAAAATAGTGGAGTTTGTTGTTTCTGAAAATT ATATACCTGTTATTTCCAATTAAAACGCCACTGGTATTTTTTTTC Right flanking sequence: Indices 8092737 -- 8093236 GGAGCTAATGCCAAGTTGTGGAGAGAAAAGTATAGAAAATCTATGCTTTATGGACTTACTTGCAA ACTGCAATGTATCTGAAAATGAAGTGAGTGGCAAGCATGGAGATACAGAATGCAAATGATCCACA GTACATTGCTGAACAAATATTGAAATTATGGAGTTTTCTACAATCAACTTACTTGAAATGATAAC TCCAGCAGAAATATGATCCTTCAGAACACTGTTCACATAAAACAAAATTCCAGATCCGTGAAGAT GCATTACCTGAAATAAAGCTGAATTCACATAATCGCCCTTTTAAAACTAACTGGTAGAGTTAAAA TCTCAATTGTTGCGTAAATGATCGCATAGATTGAAAATGTAATCATCATAATTCGATATCTTCCG AATGAGGCTCCAGCTCGAATTTTAATCAAATACAGCAGTACGGTATTCGCCATAATAGCAATGAA AAAACATAAAAATTGGCAGATTCGAAGATAGGGAGATACCGCCAT Found at i:8093287 original size:7 final size:7 Alignment explanation
Indices: 8093267--8093287 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 8093257 GGTTAGCTCC * 8093267 TTTTATA 1 TTTGATA * 8093274 TTCGATA 1 TTTGATA 8093281 TTTGATA 1 TTTGATA 8093288 AAAAACATGC Statistics Matches: 11, Mismatches: 3, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.29, C:0.05, G:0.10, T:0.57 Consensus pattern (7 bp): TTTGATA Left flanking sequence: Indices 8092767 -- 8093266 TATAGAAAATCTATGCTTTATGGACTTACTTGCAAACTGCAATGTATCTGAAAATGAAGTGAGTG GCAAGCATGGAGATACAGAATGCAAATGATCCACAGTACATTGCTGAACAAATATTGAAATTATG GAGTTTTCTACAATCAACTTACTTGAAATGATAACTCCAGCAGAAATATGATCCTTCAGAACACT GTTCACATAAAACAAAATTCCAGATCCGTGAAGATGCATTACCTGAAATAAAGCTGAATTCACAT AATCGCCCTTTTAAAACTAACTGGTAGAGTTAAAATCTCAATTGTTGCGTAAATGATCGCATAGA TTGAAAATGTAATCATCATAATTCGATATCTTCCGAATGAGGCTCCAGCTCGAATTTTAATCAAA TACAGCAGTACGGTATTCGCCATAATAGCAATGAAAAAACATAAAAATTGGCAGATTCGAAGATA GGGAGATACCGCCATTTTCCATCGTAATGTGTTTCGGTTAGCTCC Right flanking sequence: Indices 8093288 -- 8093787 AAAAACATGCTTTCCTAGATGGCTTTATTCATTAAAACAATTGAAGTTATGAAAATGATGACGAA GAAAATAAGGTATCTACGTTGAAGGATTAAGGGGTTTAGTCACAACTTGACGCGCTAGAAATAAA ATAATTGATGTTTGATACAAAACAAAATAATTTTTATTAAAAACAATTTATTATAAAGGCATTTA TTAAATAATATTTACAAAGCGGAGGAATAAAAGTTAATGTGAAGGTAGATTTTAAAAGGATGATT GACGGTTAAACAAAAGTTATTCTGCGACAGTGGATTTTCCATCTTCGTTCATTGTGGAAGTCTTT GGTGCAGTCCGAGCTTCTTTTCCCAAAACGTAGTTTCGGAATTTGTCAATCATGAAAATCGCGAT AATTGGATCAATGGCAGGGTAGAGACTACAAGCTGCTCCAACGACGTTTCCAATCCTACCAAAAT GAATTTCAAAAAATGGAAGAAAAAACATTGCGCCGACAGGAATAT Found at i:8093996 original size:7 final size:7 Alignment explanation
Indices: 8093984--8093998 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 8093974 AGTAATTGGG 8093984 TTTTAAA 1 TTTTAAA 8093991 TTTTAAA 1 TTTTAAA 8093998 T 1 T 8093999 CAAAATTTGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (7 bp): TTTTAAA Left flanking sequence: Indices 8093484 -- 8093983 TAAATAATATTTACAAAGCGGAGGAATAAAAGTTAATGTGAAGGTAGATTTTAAAAGGATGATTG ACGGTTAAACAAAAGTTATTCTGCGACAGTGGATTTTCCATCTTCGTTCATTGTGGAAGTCTTTG GTGCAGTCCGAGCTTCTTTTCCCAAAACGTAGTTTCGGAATTTGTCAATCATGAAAATCGCGATA ATTGGATCAATGGCAGGGTAGAGACTACAAGCTGCTCCAACGACGTTTCCAATCCTACCAAAATG AATTTCAAAAAATGGAAGAAAAAACATTGCGCCGACAGGAATATATTGTGTAACACAGGGTAGAA TCGTTTGGAGCCCGAGAGTCCAAAATAGTTGCTTGTTCATATGTCTTGTTCTTTCACTCATTTGT ATTGTCAAATCATTCAATTTCTTATAAGTTTTGTAGGCACAAATTACACAAGTCATCAGACAGAT TGTCTGAAACAGTTTAGGTTCAGAGGGGGAGCAAGAGTAATTGGG Right flanking sequence: Indices 8093999 -- 8094498 CAAAATTTGCCCAAGTAAACGAATTTCAAACAAAAACGAAATTGCTTTAAAAATTCCCCATAATT TGATATGTGAGTTCAAATTGAAAAAAAAAACTCGCCATTATGACGCAGCTAATAGTAGCTCCCAG TAAATCAGAAAACCGAAAAAGACAACTTCCATCTTCGTTACGGGTCTGAGAAAAAGATCAAATGA AAAATAGAAAATTAAATAACTTACAAAATACAATGGACCCATGAAAGATATTTTGTCAATATCTT CGTCATACAACTGCATGGTTATATTTCGAAAGAAATCCTTTTTAATTTGATTTGGTCCAAAATTG AAATAAATTGACAAAGTCCAAACAATGAAAAGAATTGTAGGAGGTATAAATAAATTATATATTTT AATTCCATCAAAGTAATATAATTTCCCATGTCTGAATAAATACATATAACAAGTTGTACGATAGG TAAAAGTTAGTGTACCTGCAAACTGCTACATATCTGTAGATAAAA Found at