TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10208470 original size:9 final size:9 Alignment explanation
Indices: 10208449--10208470 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 10208439 TATAACTTCT * 10208449 TCTTGTTCA 1 TCTTGCTCA * 10208458 TCTTGCTCG 1 TCTTGCTCA 10208467 TCTT 1 TCTT 10208471 CAACCGCTTC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.05, C:0.27, G:0.14, T:0.55 Consensus pattern (9 bp): TCTTGCTCA Left flanking sequence: Indices 10207949 -- 10208448 GTCGGCATCGGAATGCTTGGACAAGATGGAATGATTACATTGTCAAAATCAGAAGAGCACGCTGT GAAGGATGTCGGATATTTTTGTGTTTCGAGTTGCGATATCAAGCTGGTTCCACGGAAGACTGGCA GTGGGACGTTGTTCGAATGGTACTGTTGACTACTGGTGGGCGCAGCTGAGCTTTTAAGCATAAGG TTACGAGTTTTTTCGCTCATGTTTCTGAAACCATTCTGAAATTAAAATATCAGGCCGCCTTTGGA AGTACTTGTATAAATCATGAGACAAACATAATGATTGGATAATCGATCTTTGCAAGCTATCTTTA TATTTATTTTGCAAGACGAAAAAATAACAACTTATTCAACAATAACAAAAAGTAAAAACAGTGTA CCCGTTATAATCAATTAAAATTTGATTAAACTGGCTCTTCTTTAATTTTAACAGGCTGTCTAACT TCTTCTTGAGGCTGTCTAATTTCTTCTTTGGGCTGTATAACTTCT Right flanking sequence: Indices 10208471 -- 10208970 CAACCGCTTCATCATCTTCATCTTCTGCTGCCCACCATCCAATACATCCCAATCCAGTACTAGCC ATCGTACCTTTGATTTCCATAGATTTCTCTGTTTTTCTCTCTTCGTGTGTTAACTCTGGTTTGAG ATCTCTGCAAACAAATCAATATTTTAATTTCGATGAAATACAAAATGTCTCACTTGAAAATGATT TCCGTCACTCGGAATCTCACAATCTTCCCTGGATCCATATACAGTTTTGCTGGTGGTTCTCCATC TTCCTGTGCATATTCCCAATACCAAACTTGCCCTTCTTCTTCGAAAACATGAGGTTCTGGAAGCT TTTCCGCCGGTACAAAAATGTCTTCGAAGAATTGAATTGTTAGACAAAGACCTTGTCGTGATGAA CCAATCACTTTGGCCTCAATAACTTCATCGACAAATGGCCGAAAAACGATCATACGGAACTGAAG ATTTATTTCATTTCTCAAATACGACTGTACATTGATTTATTACCT Found at i:10208489 original size:9 final size:9 Alignment explanation
Indices: 10208455--10208496 Score: 35 Period size: 9 Copynumber: 4.7 Consensus size: 9 10208445 TTCTTCTTGT ** 10208455 TCATCTTGC 1 TCATCTTCA * 10208464 TCGTCTTCA 1 TCATCTTCA * ** 10208473 ACCGCTTCA 1 TCATCTTCA 10208482 TCATCTTCA 1 TCATCTTCA * 10208491 TCTTCT 1 TCATCT 10208497 GCTGCCCACC Statistics Matches: 23, Mismatches: 10, Indels: 0 0.70 0.30 0.00 Matches are distributed among these distances: 9 23 1.00 ACGTcount: A:0.14, C:0.36, G:0.07, T:0.43 Consensus pattern (9 bp): TCATCTTCA Left flanking sequence: Indices 10207955 -- 10208454 ATCGGAATGCTTGGACAAGATGGAATGATTACATTGTCAAAATCAGAAGAGCACGCTGTGAAGGA TGTCGGATATTTTTGTGTTTCGAGTTGCGATATCAAGCTGGTTCCACGGAAGACTGGCAGTGGGA CGTTGTTCGAATGGTACTGTTGACTACTGGTGGGCGCAGCTGAGCTTTTAAGCATAAGGTTACGA GTTTTTTCGCTCATGTTTCTGAAACCATTCTGAAATTAAAATATCAGGCCGCCTTTGGAAGTACT TGTATAAATCATGAGACAAACATAATGATTGGATAATCGATCTTTGCAAGCTATCTTTATATTTA TTTTGCAAGACGAAAAAATAACAACTTATTCAACAATAACAAAAAGTAAAAACAGTGTACCCGTT ATAATCAATTAAAATTTGATTAAACTGGCTCTTCTTTAATTTTAACAGGCTGTCTAACTTCTTCT TGAGGCTGTCTAATTTCTTCTTTGGGCTGTATAACTTCTTCTTGT Right flanking sequence: Indices 10208497 -- 10208996 GCTGCCCACCATCCAATACATCCCAATCCAGTACTAGCCATCGTACCTTTGATTTCCATAGATTT CTCTGTTTTTCTCTCTTCGTGTGTTAACTCTGGTTTGAGATCTCTGCAAACAAATCAATATTTTA ATTTCGATGAAATACAAAATGTCTCACTTGAAAATGATTTCCGTCACTCGGAATCTCACAATCTT CCCTGGATCCATATACAGTTTTGCTGGTGGTTCTCCATCTTCCTGTGCATATTCCCAATACCAAA CTTGCCCTTCTTCTTCGAAAACATGAGGTTCTGGAAGCTTTTCCGCCGGTACAAAAATGTCTTCG AAGAATTGAATTGTTAGACAAAGACCTTGTCGTGATGAACCAATCACTTTGGCCTCAATAACTTC ATCGACAAATGGCCGAAAAACGATCATACGGAACTGAAGATTTATTTCATTTCTCAAATACGACT GTACATTGATTTATTACCTTAACTCTCGCTCTACAATCTCCTTCG Found at i:10210202 original size:7 final size:7 Alignment explanation
Indices: 10210186--10210202 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10210176 CTAACATATT 10210186 CAAATGC 1 CAAATGC * 10210193 CAAATTC 1 CAAATGC 10210200 CAA 1 CAA 10210203 CATCTTGCTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.29, G:0.06, T:0.18 Consensus pattern (7 bp): CAAATGC Left flanking sequence: Indices 10209686 -- 10210185 ATTTGATGGAACATTCTGGCAATGTTATAAAAGACTTCTTGTTGGCAAGCCCGTGCTTTTGAATA CTTCTTCATAAAAGCAATTCCTCGGATTCCGATGAGGTGTCTACTTGAGAGATCCTTCTTACAAG ACATATGAGTGAAAGTGAGAGCAAGCAGCATACAGATGAGTGGATTTCGTTTATTGGCTACCCAT ACTCGAAGATACTCTCCCATTGCATGTCGGTATGTTCCCGTGATAAGTGAATTATTGCCTGAAAT CGCTTGAAGAGCATGATTATCTTTAGCTTTGACGAGTGCTCTCATGATAAATCGATGGTAGCAGA CATTCTGAGAGTTGACGAATACGTAGTTCATTGCATTGAAAAGGCGTTTTTGGAGAACGTCAGAG AATGAGCCATTTTGAGGATCGCTGACTGCCTGGAAATTTAAATTACTTAAATGCGTCCAATAAGA TACAAATTGTTACCAAAGAAAAAGTGTGAAAGAATCTAACATATT Right flanking sequence: Indices 10210203 -- 10210702 CATCTTGCTTTGATTGCACAAAAATATACTAAATTCTGGAAAGTGGAGATTCTGAAAATTTTGTA ATGTGTGGAAAATTTTGAACAAATTAGCTCACTTGTCGGCTTTGAAAAGAGTTGGATGTAAAAAT GCATAACAACAGACAATGAGTGCGTCTTGATGTTTCTCCATTTTATTTAAACATTCGATTAACTT CAAACAGTAGTCATGTATCTGAAAATTAAAAATTTACACAATCAAATGTATGCTCGAATAATGAT TACATCTGTTCCCGAAAGCGATGTTTGAAAAGTCCCATTGGCTTCTACAGTTGCTCCCAGCCTTT TGACAAGGCGTTCCCAATTTGTATGTTTAACAACTCCAAAAGCACAAGTTTTCAAAGTATTACTG AGAGCAGGTGCTGGAAATTCGTATTGAAGACAATTAAAATGTTATTTCACTTACTAGTCGTTTTT CCTTTGGTAACCCGTCGTTTCTTCAAAATATCTGGAGAAATATAG Found at i:10211402 original size:10 final size:9 Alignment explanation
Indices: 10211383--10211403 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 10211373 TATCTGAAAT 10211383 AATTTTATA 1 AATTTTATA 10211392 AATTATTATA 1 AATT-TTATA 10211402 AA 1 AA 10211404 CAACACAGTG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 4 0.36 10 7 0.64 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (9 bp): AATTTTATA Left flanking sequence: Indices 10210883 -- 10211382 TGCTGGAGAGTTGACAAATGGATACGATTATCAATATGATCCGGTTGTAGTATCAGAACTTTATT GAATGCTTCCATTGCTAGATCATCATGCTTCTGCATCATTTCAAGACTTCCTTTCAGATACCAGT AAGCACCAGATGCTTCGTTGTTGTAACAAGGATTTTTGGTCAATTGATCCAGGAAGTTCTAAAAA AAACTGTATTTTGTTATTACATAATATTTCTCACCATTGCAAGTTTCGGATGTCCTCTGTTCTTG TAAAGCCTTGGCACATCTAGAATAAATCCTTCATCTTCTTCTACATTGAAATTTCTTTTCAATAA TTTATGTTCCAACACGGAAGACTGTTCGACTTCATCCAAACTGAAGAGACAAATGACGAGATGGC AGTGCATACTGACTGGAAACAGATTGACATCAATATCATAATCGATATCGCTTCCGACAGGTGGA AAAGGCAAACATTCATATGTTCCATTTGTGTAAGTTATCTGAAAT Right flanking sequence: Indices 10211404 -- 10211903 CAACACAGTGATAGACTTTATGAACAACTTACAAGGCATGCGGGATCCTTTGTTGTAGAACGAAT TGCTTTGACACCATTGCACATTGCCAGAATTGACATTCCAGCTTGTCGGAATTTGCTCTTTGCTA AATACATTCCAATGAGAGTTTCATGTTGTGGTTCTGCATCTCGTTCGAATTCTTTACTCCGGAGA ACAAATGCTTCGAGAGATTGAATTGCTTTCTCTTCATCATTCATTGTAATGTAGTACTGAGCGAC TTTGCGAATCAAATCATGAAACCACTCAAAATCCACTTGTAAAATTTCATTGTTGATCAATTGAG CAGCTTGTAGACGAGTACGCATTGCGAGAGGTCGTAGGTTCAGCCGATCAAGCATTTCAATTCTT TTTTCGTAAAACTTCCAATTCTCATTATTGAGATGAATAGCTCTATCGTAACAAACGGCAGCTTC TTCAATCATTCCGAATTTTTCAGCTTCATCTCCCCAATGTACCCA Found at i:10213105 original size:10 final size:10 Alignment explanation
Indices: 10213092--10213115 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 10213082 ACGTTGTACA * * 10213092 AAAAATGGAT 1 AAAAACGAAT 10213102 AAAAACGAAT 1 AAAAACGAAT 10213112 AAAA 1 AAAA 10213116 TTCAACAAAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.71, C:0.04, G:0.12, T:0.12 Consensus pattern (10 bp): AAAAACGAAT Left flanking sequence: Indices 10212592 -- 10213091 TCTTCCTTGAGAGTTTGTCCTCCAGTAACCCGCATAAATTGATCATAGTCATATTCATTTCTCAT GAATCTATTGATAGCGTTCACTAATTCTTCATCATCAATGGCTTCAGCTGGCTCTTCTACTCTTT TTCTATTCCCGGACCCATTGTGTAATCCAGTAAGATGAGGTTTTGTATCAATTCCAGCAATAATT CCATTTGTATCATCATCATCATCAAAATCGTATTCTTCTACTTCAGGAACATCAGAACCTTGTTC TAAAATATTACCGTACTCTTCTTCTTCCTCTATTAAGAAATCGGAAGTTGATGGTTGATTTGGAT CCATGTTTCTTCAAGCAATAATACTATGAAAAAGAAGTTTGTGATCTGTTTTAAAATAAAAAGAA GCGATCGGTACGCGATGAAAATTTGAATTTCGACCATTAACTCTAACATTCATGTTTTATAAAAA AAAAATTGAAAAATGTAGAAATAACAAGTGTAACAACGTTGTACA Right flanking sequence: Indices 10213116 -- 10213615 TTCAACAAAATGTACCAAATATTTCAACAAAAAAAACAAATCAATTGTACTCCATAGGAAGTCGA TTTGGTCCGGAGAAGGGCTCGAATGGGTCGAAGGTATCGATATTCTGATGGGTGCGGTTCTGATA TCCACCTCTTCGGCTTCCTCCGTGGAAATTTCCGCCGCGTCCACGCTTGAAACCACCGTCTTGAC CTCCATCTTGTCCTGGTCTTTTCTGAAATCATTTATTTTGAATCTGAATAAATATTGAACCACTA ACTCTGAAGATATTATGATTCGAGCCTCCTCCACCTCGATTGGCGCCTCCGCGATGAAAGCCTCT ACCACCACGTCCTCTACCGCCGCCTCCGAATCTTTGATTTCCTACACCTCCGTATTTGGTTTGAA TCTCAGCAAGTTCTTCCATAGACAATAACTGCATACTTTCAATAAATTCGTCCTTCATAGTAATT ACTAATTTTGGAAAATCTGCAACGACTCGAGTTCTTGTCATTTCA Found at i:10214959 original size:7 final size:7 Alignment explanation
Indices: 10214943--10214959 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10214933 AAAAATGGAT 10214943 AAAACCA 1 AAAACCA * 10214950 AAAACTA 1 AAAACCA 10214957 AAA 1 AAA 10214960 GAAAACATTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.76, C:0.18, G:0.00, T:0.06 Consensus pattern (7 bp): AAAACCA Left flanking sequence: Indices 10214443 -- 10214942 CTCGTTTTCCACATTCTTTTGATTTTCAATTTTCCTCTTGTAGGCTTTGATAACGTCTTCAGGAG ATTTTTCGTCTTCCGATGAGGGATAATTCACCAAAACTGAAAATTGTTTTTGTTTAAATTGATAT CAAACTTGAAACTAACATTCAGAAGTTATATTTGGAATTTCCGTTGGTACATCATCATCATCGTC CAGTATTTCTCCGTCTTCCTGATAGTCTTCTACTTCTTTTGGTTCAGGAGTATGGCTCGTAGTCA TATTACTGAAAATTCAATTACTCTTGCGACATTCGAAGTTTATTTAAATCGCAAGTAATAAAAGC CTATTTTTAGTTTAACATATTGAAATTTATATATTCTTTTAAAGAAATGCACTACAAAATGCTTG AGACGCCGAAAATTTAGCACCACATTTTTCGTTGTCTTCCAGATGTCAAACAAAATGGGCACGTG ATTACAATCAAGCAAAATGCTAATCATTTTTGAAAAAAAATGGAT Right flanking sequence: Indices 10214960 -- 10215459 GAAAACATTGAAAAGAGAAGGAAGAAGGGAACAAATCTGCAAGAGTGAATTCACATTAATTCACA TAATAAAATATTTTTATAAAAAAAATTTAGGCGTGTGCGCTTTGTCGTGGCCGTGTTTGCACAAA GCACACACAACTTGACGACAAGGAAGATAGAGACAATCATAAACAAAAGAGACTATTTACAGCAG GATTAGAAAGTTTAAACTAATTCGTGAACTTGATAACAACAATTTCAATAATATAAACTGAGAAA ACCAACAAAAAAATCAGGAAGAGTAAAAAAATATGAAAAATTGAAGTTTCAAAAAAATGTAAGGA TTACGGTATGAGAAAATGTTGAACTGTGAATTTTTTCGTGTCCGCGTTGAACTTTCTGATTTCTC TCCGGTCGATAATTTTTTAAGGCCTAAAAATCCTATTTTATTCAAGAATTATTATGTGCTCCTTC AATAATTTTGCTATTTAAAAACGTTATATTTTAGTGTTCCACATT Found at i:10215264 original size:8 final size:9 Alignment explanation
Indices: 10215246--10215264 Score: 31 Period size: 9 Copynumber: 2.2 Consensus size: 9 10215236 GGAAGAGTAA 10215246 AAAAATATG 1 AAAAATATG 10215255 AAAAAT-TG 1 AAAAATATG 10215263 AA 1 AA 10215265 GTTTCAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 4 0.40 9 6 0.60 ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21 Consensus pattern (9 bp): AAAAATATG Left flanking sequence: Indices 10214746 -- 10215245 TTAAATCGCAAGTAATAAAAGCCTATTTTTAGTTTAACATATTGAAATTTATATATTCTTTTAAA GAAATGCACTACAAAATGCTTGAGACGCCGAAAATTTAGCACCACATTTTTCGTTGTCTTCCAGA TGTCAAACAAAATGGGCACGTGATTACAATCAAGCAAAATGCTAATCATTTTTGAAAAAAAATGG ATAAAACCAAAAACTAAAAGAAAACATTGAAAAGAGAAGGAAGAAGGGAACAAATCTGCAAGAGT GAATTCACATTAATTCACATAATAAAATATTTTTATAAAAAAAATTTAGGCGTGTGCGCTTTGTC GTGGCCGTGTTTGCACAAAGCACACACAACTTGACGACAAGGAAGATAGAGACAATCATAAACAA AAGAGACTATTTACAGCAGGATTAGAAAGTTTAAACTAATTCGTGAACTTGATAACAACAATTTC AATAATATAAACTGAGAAAACCAACAAAAAAATCAGGAAGAGTAA Right flanking sequence: Indices 10215265 -- 10215764 GTTTCAAAAAAATGTAAGGATTACGGTATGAGAAAATGTTGAACTGTGAATTTTTTCGTGTCCGC GTTGAACTTTCTGATTTCTCTCCGGTCGATAATTTTTTAAGGCCTAAAAATCCTATTTTATTCAA GAATTATTATGTGCTCCTTCAATAATTTTGCTATTTAAAAACGTTATATTTTAGTGTTCCACATT TGTATTAAACTTTGGTTGATCCTCGTAAATAATTGAATATCAGTTCTAGTTTTAGGAATCAGAAA AACAATGAACTCCCAGCAAGAATGGGAACATGCATATAGCCTTGCTGAACGAATGTATAATAAGC AAGCACCGACTAAAAGGGAGGAGCTGAATCCAACGGAGAGGGTGATTTGTTCTCGATTCGAAACA ATCTTCGATTATGACCCGTTCAAAGGTAGGTGCTTATGGGAATTTTTTAAATGTAACTTACGTAG GTTATTTTTAGATGAGTACACATTTCGTGATCAAGCTTTATTGTT Found at i:10219268 original size:7 final size:7 Alignment explanation
Indices: 10219256--10219269 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10219246 AAACTGTAGC 10219256 TTTACTG 1 TTTACTG 10219263 TTTACTG 1 TTTACTG 10219270 AAATTTCGCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): TTTACTG Left flanking sequence: Indices 10218756 -- 10219255 TTTAACGCCTGCCTTGTTTTGTAGAATTCGATAACTAGATAGTTGTCGAATAACCGAGTGTATGC GTATTTTATGAATTTTCAGAAATGAAGATTGTTTTATTAAAAAATAAATCGTTGAACGCTAAATT TAGGTGAAAGTCTCATTTTCATATTCGGAGATAAAATTTCAATGCATAGGTCGATTGAAGAAAAA AAAGTACAAGTTTTGTGCAAAAGCACGATGCCCGGTCTCGGCACGATATATTTGTTAAATACAAA AACGTGTGCTCCTTTAGAGAGTACTGTAGACAATAAAAACATTCAAATTTGACCAAATTGAGAAA AAAAATTATGAAAAATCGATGAAAATTGCGCATCAACGAAAGTTTCAAATTACAGTAATCTTTAA AGGCGCGCATCTTTTCGCATTTAACAAAACATTTGTAGTGTCGAGACCGGGTACCGTATTTTCTT GGAAAAATCGCAAAAGTGTACCTTTTCCCAGTTTAAAACTGTAGC Right flanking sequence: Indices 10219270 -- 10219769 AAATTTCGCGTCCTCGCTAAAATGCATTATCTTATTATTCCGATGTTATTTTTAGATTACTATAT ACTCATTACCATATAGTTGAATTGTTCCATTTTTTCGATTCGAACGTCACTCCTAAATTTAGCAA TTGAAAAAGCAATTAGAACAACAGTATCCTTCTTTTTCTCACAAAAAAGTTGTTTTGAGCACCTG ACAATCGCTTCTCTTGTGTCCATTTTCAGCTTCTTCACATCACAACGACTACTAACATGACCAGT CGTTGAATAATACTAATATTCGTCTCCTCCCTCTCTTCTCACTTTTCATGAATTATCTCTCATTC ACTTGCTCGTATACGCCTACTTTTTCATTCTTATCCAACTACTCATTTTACTGATTGAGAAATAA TGTTTTCTCTTTCTGATGAGTCCAATATTAGTATCTTCTTCTGCTTCTACATTATAATGTTCATT GTGACAATGAATTTGTGGAGAATTCTGAAGATTAAGGGAAAGGTA Found at i:10223697 original size:9 final size:9 Alignment explanation
Indices: 10223683--10223730 Score: 47 Period size: 9 Copynumber: 5.7 Consensus size: 9 10223673 CAGATCCAAA 10223683 TCCATATCC 1 TCCATATCC ** 10223692 TCCATAAGC 1 TCCATATCC * 10223701 TCCATATGC 1 TCCATATCC * 10223710 TCCGTA--- 1 TCCATATCC 10223716 TCCATATCC 1 TCCATATCC 10223725 TCCATA 1 TCCATA 10223731 GTATGATGGA Statistics Matches: 31, Mismatches: 5, Indels: 6 0.74 0.12 0.14 Matches are distributed among these distances: 6 5 0.16 9 26 0.84 ACGTcount: A:0.25, C:0.38, G:0.06, T:0.31 Consensus pattern (9 bp): TCCATATCC Left flanking sequence: Indices 10223183 -- 10223682 AATAATATTCTGATAGCATTTTTTGAGTCGACGAGTATCAGAATGTCAGAGATTTGCAGATTAAA GGAATTATTAGATGAGGAGCTTGAACTTTCAAAAATCATTTTTTGGAGCAAAAGTTTGTATAAAA GACAACAGAAAATAAAATTCGATATTTCAAAACTTGTTTGGTTTTGGTGTCGACTCAATATTTGA AAGTTTTGATAAAATACACCTGTTCAGTATTTGCGTCAGCGAAATTAATGTTTAAAAAAATTGAT TTCGATCAATATAAGAACAAAAAAATATAAGAACACGTTTTTACAGTTTTTTTTTGTTTTAGTCT TAACTAAAATACCAACGAACAATTAAGCCTTGAGATAATCCAGAAATGTATTTAAATTCAGAAAA TCATTCATTTCAGAACTTTCGTACACATTCGAAACATATTCAGTTTAGTTCTGAGTAGGTCCAAA TCCAGCTTCTCTCTTTCCGTAATATCCAGCATATGCAGATCCAAA Right flanking sequence: Indices 10223731 -- 10224230 GTATGATGGATAATAAGATGAAGCATATCCATAATATTGGGCAGAAGCTTCTCGAACAATTGAGC ACATGGCAATGGCGAGGACGCAGAGAAGGCTGAAAAATGGATATTGAGAAAACTGTTGAAGGCCC GAAACTTACAATTTAGAATTCATAATGAATTGAGTAATAGAAGAATGTGAAGGTCCTTGCTTATT CTCCCAAAAGTTTCCACTTTTATACCCAAAGTGTGTATACATTTTCACCCGTTTCCCAGTTTGCT CACTCATGTTCATTGCCCAAGCCGTAGTTTTTCATACGTTTTTCACTAGTTCATAATCAAACCTG TCAAAAGGGCACAGTTGCCATAGAGTTCTGACGGTTTTAAGATTTTTTTAAACATAATCATCGAT CAATGTGTATTTGGCAGGTTTACTTATTGAGGAAAAAAGTAAAAAGCGTGAACAGCGACGGGTGC AATGAATGAATGAAATGAGCAAACAATGCCAGGTATAAAAATAAT Found at i:10224475 original size:9 final size:9 Alignment explanation
Indices: 10224444--10224477 Score: 40 Period size: 9 Copynumber: 3.8 Consensus size: 9 10224434 CAGGATATGG * 10224444 ATACGGAGC 1 ATATGGAGC * 10224453 ATATGGAAC 1 ATATGGAGC * * 10224462 TTATGGAGG 1 ATATGGAGC 10224471 ATATGGA 1 ATATGGA 10224478 CTTGGATCTG Statistics Matches: 19, Mismatches: 6, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 9 19 1.00 ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24 Consensus pattern (9 bp): ATATGGAGC Left flanking sequence: Indices 10223944 -- 10224443 TTTATACCCAAAGTGTGTATACATTTTCACCCGTTTCCCAGTTTGCTCACTCATGTTCATTGCCC AAGCCGTAGTTTTTCATACGTTTTTCACTAGTTCATAATCAAACCTGTCAAAAGGGCACAGTTGC CATAGAGTTCTGACGGTTTTAAGATTTTTTTAAACATAATCATCGATCAATGTGTATTTGGCAGG TTTACTTATTGAGGAAAAAAGTAAAAAGCGTGAACAGCGACGGGTGCAATGAATGAATGAAATGA GCAAACAATGCCAGGTATAAAAATAATTTTTGAGTGAGAAGAAAGCAAGATCATTCTTCTACAAT ACGACTGAAAATGAATGCTAAGTTGTAAGTTTTGACTGACTTTAAAACTTTTAATTTCCAATTTC AGCCTTCTCTGCGTCCTCGTCATTGCCATGTGCTCAATTGTTCAAGAAGCTTCTGCTCAATATTA TGGATATGTTTCATCTTATTATCCATCATACTATGCAGGATATGG Right flanking sequence: Indices 10224478 -- 10224977 CTTGGATCTGCATATGCTGGATATTACGGAAAGAGAGAAGCTGGATTTGGACCTACTCAGAACTA AACTGAATATTTTTTGAATGTGTACGAACGATCTGAAATGAATGATTTTGATTCTGTAACCTAAT ACAATTGTCAAAAATACACTAAATATACAAAATATTCACAAAATATAAAAGCTCTGAAATGAAAA TTTCTAAATTTCAAATTATTTTTTTTGAAAACTACGTAGATTAGCATCAAACATCATAATACTGA ATGCAATGCTTTCAAAAGTTAATTTAGAAACTTTTCAAATATTCTAAATCAGTAATCGAATTCCA ACATGTGTTACCTGAAGTTTGAAAAAAATCACCTGTACCATTTCTTACACAAAAATTGTTTAGCC AGATGTGAAAGTTTTCTAAATGTTTTCGGTTAGCTGGAAATCTGCAAATGGATCCTACCTGAATG AAAGTGAACGTTATTTTAATTATTGGTTCTATTCTCAACTTTTTT Found at i:10224640 original size:9 final size:9 Alignment explanation
Indices: 10224618--10224654 Score: 42 Period size: 9 Copynumber: 3.9 Consensus size: 9 10224608 ACAATTGTCA * 10224618 AAAATACAC 1 AAAATATAC * 10224627 TAAATATAC 1 AAAATATAC 10224636 AAAATATTCAC 1 AAAATA-T-AC 10224647 AAAATATA 1 AAAATATA 10224655 AAAGCTCTGA Statistics Matches: 23, Mismatches: 3, Indels: 4 0.77 0.10 0.13 Matches are distributed among these distances: 9 13 0.57 10 2 0.09 11 8 0.35 ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24 Consensus pattern (9 bp): AAAATATAC Left flanking sequence: Indices 10224118 -- 10224617 GATCAATGTGTATTTGGCAGGTTTACTTATTGAGGAAAAAAGTAAAAAGCGTGAACAGCGACGGG TGCAATGAATGAATGAAATGAGCAAACAATGCCAGGTATAAAAATAATTTTTGAGTGAGAAGAAA GCAAGATCATTCTTCTACAATACGACTGAAAATGAATGCTAAGTTGTAAGTTTTGACTGACTTTA AAACTTTTAATTTCCAATTTCAGCCTTCTCTGCGTCCTCGTCATTGCCATGTGCTCAATTGTTCA AGAAGCTTCTGCTCAATATTATGGATATGTTTCATCTTATTATCCATCATACTATGCAGGATATG GATACGGAGCATATGGAACTTATGGAGGATATGGACTTGGATCTGCATATGCTGGATATTACGGA AAGAGAGAAGCTGGATTTGGACCTACTCAGAACTAAACTGAATATTTTTTGAATGTGTACGAACG ATCTGAAATGAATGATTTTGATTCTGTAACCTAATACAATTGTCA Right flanking sequence: Indices 10224655 -- 10225154 AAAGCTCTGAAATGAAAATTTCTAAATTTCAAATTATTTTTTTTGAAAACTACGTAGATTAGCAT CAAACATCATAATACTGAATGCAATGCTTTCAAAAGTTAATTTAGAAACTTTTCAAATATTCTAA ATCAGTAATCGAATTCCAACATGTGTTACCTGAAGTTTGAAAAAAATCACCTGTACCATTTCTTA CACAAAAATTGTTTAGCCAGATGTGAAAGTTTTCTAAATGTTTTCGGTTAGCTGGAAATCTGCAA ATGGATCCTACCTGAATGAAAGTGAACGTTATTTTAATTATTGGTTCTATTCTCAACTTTTTTTT CTTGTTACACTGACATCTTGGCATTTTTATTTTCATTTTTTCAAAAAGGTACGTCTGAAATCCTG ATCGGATATTATCACTCGGTATTTTTTCAGGAATTTTTTGTCAATAGTACTCCTTATTTCAACTT TTTCTTGAAACTCCATCTTTTTTATATGTATCTGCTTTGTGGATC Found at i:10224683 original size:8 final size:7 Alignment explanation
Indices: 10224670--10224689 Score: 31 Period size: 8 Copynumber: 2.7 Consensus size: 7 10224660 TCTGAAATGA 10224670 AAATTTC 1 AAATTTC 10224677 TAAATTTC 1 -AAATTTC 10224685 AAATT 1 AAATT 10224690 ATTTTTTTTG Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 5 0.42 8 7 0.58 ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45 Consensus pattern (7 bp): AAATTTC Left flanking sequence: Indices 10224170 -- 10224669 GAACAGCGACGGGTGCAATGAATGAATGAAATGAGCAAACAATGCCAGGTATAAAAATAATTTTT GAGTGAGAAGAAAGCAAGATCATTCTTCTACAATACGACTGAAAATGAATGCTAAGTTGTAAGTT TTGACTGACTTTAAAACTTTTAATTTCCAATTTCAGCCTTCTCTGCGTCCTCGTCATTGCCATGT GCTCAATTGTTCAAGAAGCTTCTGCTCAATATTATGGATATGTTTCATCTTATTATCCATCATAC TATGCAGGATATGGATACGGAGCATATGGAACTTATGGAGGATATGGACTTGGATCTGCATATGC TGGATATTACGGAAAGAGAGAAGCTGGATTTGGACCTACTCAGAACTAAACTGAATATTTTTTGA ATGTGTACGAACGATCTGAAATGAATGATTTTGATTCTGTAACCTAATACAATTGTCAAAAATAC ACTAAATATACAAAATATTCACAAAATATAAAAGCTCTGAAATGA Right flanking sequence: Indices 10224690 -- 10225189 ATTTTTTTTGAAAACTACGTAGATTAGCATCAAACATCATAATACTGAATGCAATGCTTTCAAAA GTTAATTTAGAAACTTTTCAAATATTCTAAATCAGTAATCGAATTCCAACATGTGTTACCTGAAG TTTGAAAAAAATCACCTGTACCATTTCTTACACAAAAATTGTTTAGCCAGATGTGAAAGTTTTCT AAATGTTTTCGGTTAGCTGGAAATCTGCAAATGGATCCTACCTGAATGAAAGTGAACGTTATTTT AATTATTGGTTCTATTCTCAACTTTTTTTTCTTGTTACACTGACATCTTGGCATTTTTATTTTCA TTTTTTCAAAAAGGTACGTCTGAAATCCTGATCGGATATTATCACTCGGTATTTTTTCAGGAATT TTTTGTCAATAGTACTCCTTATTTCAACTTTTTCTTGAAACTCCATCTTTTTTATATGTATCTGC TTTGTGGATCTCTTATATTTTCTGAAGAAGTTCAAAAATGTTGCG Found at i:10227833 original size:8 final size:8 Alignment explanation
Indices: 10227822--10227837 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 10227812 ATAATTTAGA * 10227822 GAAATTGT 1 GAAAATGT 10227830 GAAAATGT 1 GAAAATGT 10227838 TTTCTACAAC Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31 Consensus pattern (8 bp): GAAAATGT Left flanking sequence: Indices 10227322 -- 10227821 AATTCGCTCCAATGTGCGGGCAATATGAGTCTGTGATATAGACGGCGCCCGACTCAGATCTTATC AGTGATAGAAATTGCCCTGAAAAAAATGAAAATTATGATTGTGTGATTTTTTGATGTAGTGTCAA ATGTAGCATTCACACTTTGATCACCAACAAGCTACTGAACATACTGTACTTATCATTAATTAAAA AATAACTGTGGTAGTGAAGTGTCAGGTGATTCTACTGGGATAAAAATAGAGTCGTTACACAGTAT GGCACCTTTCCCTTTCTGTAAATTTAATTTTTTTTTCAAATTGAATTCAAAAATCCGATGTGACG TTGTTTTAAGTCAAAAAAAATTAAATCCATTTTAAAAATTAAAATAAAAACCGAAACTCCAAGAA AAACAAGCACTGAATCAATCAAAATCTGGAAATAACAGGACGCCGAGCGTCTATTCTTTTCAGAC CAATGTCGAACTCTTACAACTTGCCCTTCCATTTCATAATTTAGA Right flanking sequence: Indices 10227838 -- 10228337 TTTCTACAACTTTTCCTTACATTAGACTAAAATTTGTTTCTTTTGAATTTACCTAAAACTGTGAT TTCCATTATTTGATTGTTCGCTAACTTCTCAGATTCACAAACACAATACCATCCATTGGGAAAAA CTGGAGGCATATCTCCAACTCTTCTTAAAAGCTTCAATCTCTCCAATTGACGTTCTCTGTAAAAT CCTTTCAGCTGAAAATATAATTATTCAACACTTGAAATATCTATAAACTGTCACCTCTGGTTTTC CGAAAAACAATCCAACATCGCCAAGTCTCCTGACTCGATTCAATGGTTTTAAAGTAATATGAATA AGATAAACTATCAGAATAGTAGTAACAACAGATATTGGATGAGCCGTTAAAAAACCCCAAATCTG TTCCAGTAGCATCTTGAAACTATAAATTGAAAGTATTCATGAACGTGTCACCTTCCAATTCAAGT GAGAAATGATAAAACTATGCAAATTATAATCAAGAGTATTGAGAA Found at i:10228829 original size:7 final size:7 Alignment explanation
Indices: 10228817--10228831 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10228807 GCCTACCTTG 10228817 AGATAAA 1 AGATAAA 10228824 AGATAAA 1 AGATAAA 10228831 A 1 A 10228832 TCAACTAGGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13 Consensus pattern (7 bp): AGATAAA Left flanking sequence: Indices 10228317 -- 10228816 TATAATCAAGAGTATTGAGAAAAATGTGTTATCAGTAATTGAAACCTCCGAAAAACCATAGCATG GTTTCGTGGGAAAGAGAGAAATGAAAAAAAACAGTGCACTGCAAACATTAATTACCAAAAATCAA CTGGAGACAAAATCGTTTTGAATACTTCTTGATTTAAAAAATTGGTGGTTCCCAAAAGAAACATT TCAAATCGAAAACATGACAATGACAAATGCCAATTTTTAAATTAACATTTTTTGATTGGAAACTA ATTTATATATTTGCTATTTCTAGGCATATTTTGGCAAATTATTTGAAAATTATTTTTTAATGTTG AAGAAACCAAAATAAAATTATCAGAGCACAAACCGTGATTTGTAACAATGTCACAATTTTTTTGC ATTAGTCAGTCACACGTTCATTCCGGAAAGACGTGAGTTTTGAAAAATACCAAAGAATGGGAAAA GATGAGAGAATGGAAAATAAATAGGACATGTAGTTGCCTACCTTG Right flanking sequence: Indices 10228832 -- 10229331 TCAACTAGGAAAGAATTGAGGTTACTAATGTTATGTTGTTACTTTGCAGATTTTCAAATTTTTAC AACACAAAATCCTATGAATATGGAAATTGTTAGATGTAAAAATCGCAGATTTTATAACTCGTTCT CAAACAAAAAAGTTAGATTTGACAATGAGTGTTATTTCTTAAATTTTCAAAAAAATTTTAAAAGA ATATGTGAAAACTTTTTATTCTAGAGTTCCTTTTGTTGTTTCATTTCAATTAATTTGATTATTAC CTAGAAATAAATAGCTCCCGTTAATTTGGACGCATGTAGGCACAAACTAGGCTGTTTTGTAGGGA AAAATATTTAGGTTCATTTTTTTTTATACAATCATAATATATTTTTAATTTTTGAAATCAGGAAA TAAAAAAATATACGAATTTTAAAAGTCAAAGGAAGATAGATACAGAATAATAATAAAATTATAGT TATCGCTTGTTGTAATTATGCTATAGTTTTCAAAGAAATGCAAAA Found at i:10231286 original size:7 final size:7 Alignment explanation
Indices: 10231274--10231289 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10231264 GGAAAAAATA 10231274 AATTATG 1 AATTATG 10231281 AATTATG 1 AATTATG 10231288 AA 1 AA 10231290 AAAGAAGTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (7 bp): AATTATG Left flanking sequence: Indices 10230774 -- 10231273 TATCCATATCCTCCATAGTATGATGGATAATAAGATGAAGCATATCCATAATATTGAGCAGAAGC TTCTTGAACAATTGAGCACATGGCAATGGCGAGGACGCAGAGAAGGCTGAAATGTTTTACAGTTT AAATTGAAACTAGTGAAATAAATATTCAGAAACTCACAATTTGGCGTTCATTTTCAGTAGATCGG CTGAGAACAACTGGTGTCAATGAATGAATTCCACCTCTTTTATACTTTGAGTTCTGTTGTTTGTC TTTTACTTTTCATAAAATTTCAACTACTCTAGAGTAGTTTTTGTCACACTATCGGTTAGCTCAGT GCAATATTTCAATACCCCTTTCATGTTCACGCCATTTTCAAGTTACCGCCAATGTAAACAATCAT GAGATACCCGAAATAGTTTCTTCTGGGGAAAAAACTAAACACAAATCAAATATATTTACTTCCCC GCAGTCAACGTTTCATTCCACACTTTTTATATACAGGAAAAAATA Right flanking sequence: Indices 10231290 -- 10231789 AAAGAAGTTATCTTGCTGATAGTAAGTTTTGAAATGATCGATTCAGTTGATCGCAGTACATGACG TCATCATATGAAGGAAGTGGGGATGCACGTGCTGATTCAAGTTCATAATATTCTGGAGGATGCTC TTCTGATGATAATAGGATTTGAGGCATATTTACACTTGAATAGTCTGTAAAATATAATATCTGCC TCACAAAAAACTATTTGTAAATACGCGATCTAGAAATGTTCGTATTTCACTTAACCTATGAGGAT ATTAAAACTTTAAAAAAATCTAAAATAATTTCAAACTTACATGGAACTTCTATCTCCACATCTGA ATAACACTCTCCTTTTTCACATTGATTCAAACGTTTTCCTATAGCTTTTCCAACTTCTTCAGGTT TCATGTATATAGTACATTGTTCTAATTTTATTCTTTCGTAGTGATATTTACAAATATAGAACACA GCAAGAAATAAAAGAATTGAAATTGAAAAGAATATGAAAACAGAA Found at i:10232480 original size:7 final size:8 Alignment explanation
Indices: 10232463--10232481 Score: 31 Period size: 7 Copynumber: 2.5 Consensus size: 8 10232453 TATAATATGT 10232463 TTTCTCAA 1 TTTCTCAA 10232471 TTTC-CAA 1 TTTCTCAA 10232478 TTTC 1 TTTC 10232482 AGCCTTCTCT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 7 0.64 8 4 0.36 ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53 Consensus pattern (8 bp): TTTCTCAA Left flanking sequence: Indices 10231963 -- 10232462 ATAATTCGGATTAAGTAAAAGATTGTGAGCGAATGTTCACGAAAAGCACGGAATCGTTTCGATTA ACCTAATGTTGTGGTGGCAGATTTGGTATGGATTTGCAGACGACGTCACAAAAGGTTTATTGGCT CAAGTACTGAGAAGAAAACATCAGAACTCTATCGTATTGATAAAATGATTAGGTTGCTGGTATCG TCACGATGTCTATTTATGTATCTCAACTTTCAGAATGTGACGATTCTAGTTGTCATAGTCTTGCA CGACATTTCCTTAAATTTTTTGTGGGTTTTCTGATCGGTCGCTATGTTAAATGGGAGCAATTCGA CAGTTTCTATGACAAAACCAACACATGAAAAAAAAATAGTGGGTAAATAAACCAGAGTACAGAAG TTCCCTATAAAATGGAAAATTTTTATGGAAATGCCAAGAACCTTCACATTCTTCTACTACTCAAT TCAATATGAACTCTAAATTGTAAGTTTTGGATCTTTATAATATGT Right flanking sequence: Indices 10232482 -- 10232981 AGCCTTCTCTGCGTCCTCGTCATTGCCATGTGCTCAATTGTTCAAGAAGCTTCTGCTCAATATTA TGGATATGCTTCATCTTATTACCCATCATACTATGGAGGATATGGATACGGAGCATATGGAGCTT ATGGAGGATATGGACTTGGATCTGCATATGCTGGATATTACGGAAAAAGAGAAGCTGGATTTGGC CTTACTCAGAACTAAACTGAATATGTTTTGAATGTGTACGAACGATTTGAAATGAATGATTCATC CCAATTTAATATGTATTTTATTTGTTCAAAAATAGGTTTTGGCTGTAAAGTTTGAAATTATAATC GAAAGCGACCTCTTTATTCACATCAAACAAATTATGGATTGTATTCAATTGGAAGGTTCTTTCTG CGGACCATAACGTCTCCCTGAAATCACTCTTCTTGGCGGCACCGTCTGGGGTGTTGGCCCACTCA ACGGTGATACGATCATTGTTGGTGTCCTGAAAAAGAACAAGTTAT Found at i:10232592 original size:9 final size:9 Alignment explanation
Indices: 10232578--10232625 Score: 47 Period size: 9 Copynumber: 5.7 Consensus size: 9 10232568 CCCATCATAC 10232578 TATGGAGGA 1 TATGGAGGA 10232587 TAT---GGA 1 TATGGAGGA * * 10232593 TACGGAGCA 1 TATGGAGGA ** 10232602 TATGGAGCT 1 TATGGAGGA 10232611 TATGGAGGA 1 TATGGAGGA 10232620 TATGGA 1 TATGGA 10232626 CTTGGATCTG Statistics Matches: 30, Mismatches: 6, Indels: 6 0.71 0.14 0.14 Matches are distributed among these distances: 6 5 0.17 9 25 0.83 ACGTcount: A:0.31, C:0.06, G:0.38, T:0.25 Consensus pattern (9 bp): TATGGAGGA Left flanking sequence: Indices 10232078 -- 10232577 AAAGGTTTATTGGCTCAAGTACTGAGAAGAAAACATCAGAACTCTATCGTATTGATAAAATGATT AGGTTGCTGGTATCGTCACGATGTCTATTTATGTATCTCAACTTTCAGAATGTGACGATTCTAGT TGTCATAGTCTTGCACGACATTTCCTTAAATTTTTTGTGGGTTTTCTGATCGGTCGCTATGTTAA ATGGGAGCAATTCGACAGTTTCTATGACAAAACCAACACATGAAAAAAAAATAGTGGGTAAATAA ACCAGAGTACAGAAGTTCCCTATAAAATGGAAAATTTTTATGGAAATGCCAAGAACCTTCACATT CTTCTACTACTCAATTCAATATGAACTCTAAATTGTAAGTTTTGGATCTTTATAATATGTTTTCT CAATTTCCAATTTCAGCCTTCTCTGCGTCCTCGTCATTGCCATGTGCTCAATTGTTCAAGAAGCT TCTGCTCAATATTATGGATATGCTTCATCTTATTACCCATCATAC Right flanking sequence: Indices 10232626 -- 10233125 CTTGGATCTGCATATGCTGGATATTACGGAAAAAGAGAAGCTGGATTTGGCCTTACTCAGAACTA AACTGAATATGTTTTGAATGTGTACGAACGATTTGAAATGAATGATTCATCCCAATTTAATATGT ATTTTATTTGTTCAAAAATAGGTTTTGGCTGTAAAGTTTGAAATTATAATCGAAAGCGACCTCTT TATTCACATCAAACAAATTATGGATTGTATTCAATTGGAAGGTTCTTTCTGCGGACCATAACGTC TCCCTGAAATCACTCTTCTTGGCGGCACCGTCTGGGGTGTTGGCCCACTCAACGGTGATACGATC ATTGTTGGTGTCCTGAAAAAGAACAAGTTATTGATAAATTCTATTATCATATAAACAAAACCTCC TGCCCGAAGCAAAAGCGTCACAAGAAACATTCAGAAGAACGGACTCCTTTGGTTCGAGAACTCTG CGCCTACACCAAGACGCTTCATGTTGGTGGTCTTGATTCCATATC Found at i:10233651 original size:7 final size:7 Alignment explanation
Indices: 10233641--10233654 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10233631 TTGATCCGTG 10233641 ATCTAAA 1 ATCTAAA 10233648 ATCTAAA 1 ATCTAAA 10233655 TTTAAGAATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): ATCTAAA Left flanking sequence: Indices 10233141 -- 10233640 ATGAGTTGATCACCTTGATGTGGTAGGTGTGCTTATCATCGTATGGAGCGTTGAAAACGATCTTG GTACCCGGCTGGTCTGGATATCTCCTGGTGGAACTGATTGGGCCATGGGGTTGATTGATTGAAGG AGTTATGAAAACTTTATGATTCAATTGTCTAATTCTATCTCTTTTAGACCAAATTTCTTATCTTT GTTCTAGGTGTTCCCTTTAGTTAAGGTATTGGAAGTATAAAAAAATATTTTCGCGTTTCCCATAA CTGTATTATTTTTTTGTTTTCCCGTTCTATTTTCAACTTTATTCTTTATCACAACAAATTATTGA AAATTAAACAAAATATAAAAATTGCATAGGAATTACGATTTAATGAAAATCAAAAATTGACAAAT TCAATGGAGTCATAGAAAATACGTTTGAGACATTTTTCTCTAAAATTATGTTAGCTCAAAGTTAT ATTTCTCGTTGAATAAATTTATTTTACCTTGTAGCTTGATCCGTG Right flanking sequence: Indices 10233655 -- 10234154 TTTAAGAATGACTCAAAGTACAAATCAATGGAGTTAACGGGAAGCAGTTTGACAGTTTCTACGGC AAAACCAATAGAATGAAAAAAAATAGGGGCAAGTAAATAGAGTAAAGTATACATCGTTCTGGTAT AAAAGTGGAAACATTTGGGAGAATAAGCAAGAACCTTCACATTCTTCTACAACTCAATTCAATAT GAACTCTAAATTGTGAGTTTCAGATCTTTATAAAATATTTTCTCAATATCCAACTTCAGCCTTCT CTGCGTCCTCGCCATTGCCATGTGCTCAATTGTTCAAGAAGCTTCTGCTCAATATTATGGATATG CTTCATCTTATTATCCATCATACTATGGAGGATATGGATATGGAGCATATCGAGCTTATGGAGGA TATGGACTTGGATCTGCATATGCTGGATATTACGGAAAGAGAGAAGCTGGATTTGGACCTACTCA GAACTAAACTGAATATGTTTTTAATGTGTACGAACGATCTGAAAT Found at i:10234017 original size:9 final size:9 Alignment explanation
Indices: 10234003--10234050 Score: 47 Period size: 9 Copynumber: 5.7 Consensus size: 9 10233993 TCCATCATAC 10234003 TATGGAGGA 1 TATGGAGGA 10234012 TAT---GGA 1 TATGGAGGA * 10234018 TATGGAGCA 1 TATGGAGGA * ** 10234027 TATCGAGCT 1 TATGGAGGA 10234036 TATGGAGGA 1 TATGGAGGA 10234045 TATGGA 1 TATGGA 10234051 CTTGGATCTG Statistics Matches: 30, Mismatches: 6, Indels: 6 0.71 0.14 0.14 Matches are distributed among these distances: 6 6 0.20 9 24 0.80 ACGTcount: A:0.31, C:0.06, G:0.35, T:0.27 Consensus pattern (9 bp): TATGGAGGA Left flanking sequence: Indices 10233503 -- 10234002 ATTTAATGAAAATCAAAAATTGACAAATTCAATGGAGTCATAGAAAATACGTTTGAGACATTTTT CTCTAAAATTATGTTAGCTCAAAGTTATATTTCTCGTTGAATAAATTTATTTTACCTTGTAGCTT GATCCGTGATCTAAAATCTAAATTTAAGAATGACTCAAAGTACAAATCAATGGAGTTAACGGGAA GCAGTTTGACAGTTTCTACGGCAAAACCAATAGAATGAAAAAAAATAGGGGCAAGTAAATAGAGT AAAGTATACATCGTTCTGGTATAAAAGTGGAAACATTTGGGAGAATAAGCAAGAACCTTCACATT CTTCTACAACTCAATTCAATATGAACTCTAAATTGTGAGTTTCAGATCTTTATAAAATATTTTCT CAATATCCAACTTCAGCCTTCTCTGCGTCCTCGCCATTGCCATGTGCTCAATTGTTCAAGAAGCT TCTGCTCAATATTATGGATATGCTTCATCTTATTATCCATCATAC Right flanking sequence: Indices 10234051 -- 10234550 CTTGGATCTGCATATGCTGGATATTACGGAAAGAGAGAAGCTGGATTTGGACCTACTCAGAACTA AACTGAATATGTTTTTAATGTGTACGAACGATCTGAAATGAATGATTTTTATTATGTTGTACAAC TGTAACGTTTTGACAAATCAAATAATTGAATTCATAACTGACAAAAAATTTGCTATACATTTTTC AGCTCATTAAAACTCAAAAGGGTACAGAAAAAACATATTTCATCTAAATAAGTCGAATACATGAA GCGGAAAATAAAAAGTGTGATAGTTCTTGTTGAAATCATGGGAAGTAGAGAAGCAATACATGATT TTTATAAACTTCAAAATATTATCCATTAGCTCAACTCGACACGGTTCAATTGAACATGGCTTTTT CTGGCACTTGAAATTGTTGTACTTCCTCTTCGTACATAGTACGGTGCAAACATTGGTACATTCTC TTGCTTTTTAAACATTTTAATCAAAGAATCTCGATAATCTCTGAT Found at i:10236055 original size:8 final size:8 Alignment explanation
Indices: 10236042--10236063 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 10236032 CCTTTATACT 10236042 AGAAAATA 1 AGAAAATA 10236050 AGAAAATA 1 AGAAAATA * 10236058 ACAAAA 1 AGAAAA 10236064 ATTAATAGAG Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.77, C:0.05, G:0.09, T:0.09 Consensus pattern (8 bp): AGAAAATA Left flanking sequence: Indices 10235542 -- 10236041 ATATACAACAAAACATGAGCTGTACGATAGAAGATCCTGAACATTCTTTGAACTACGGTATGTTT TTGATAAATTGGTTTAAGTTGTTTTTCCAAAAATTTCATTGTTAGCTTGTCTGGTTACGAAGAAC AAAAGGCTAGACGTCTGGTTAAATTATAATATCATAAGGCTGCACTGATTTCGAGAATGAAGTTT TATTTTTACTGATCATAAAACTCATCCAAAAAAAGAGCGAAACACTTGAAGACGTTGTCTTTTTC CGTGACTTTAATTTCAAACTTACAGGTCTGACAATCATTCCCAGTACAGAATAACAAAGTGCTGA TAATGATAGATACATCATAATATATTTGTAGGAACCCATTTTACTGTTTGATTTTGTAAGAATTA AATAAGTTAAAATTGTGTTTAGAAAAATAGAAATAAGGAGAGCAAAACATTGAACAATATCTTTC AGCAACTCGAGCATGTCTCCTTTTTCTAAAATTATCCTTTATACT Right flanking sequence: Indices 10236064 -- 10236563 ATTAATAGAGAACTGATGTGAAAAAAGCTTAAAAGCGTGATATAAGGATGATAAGACATAGTTCA GTAATTTTTCTAATTTTATTCAAATTTTCAGACAGCGTAAAATTATCAAAGTTCATTTCTCATTC AAGATCAGAGTGCAGGCAATAATGGGAACTTTTGAAAAAAATTCCATTTATAGGAATGTTGATTC TCATTATGAAAACTTCAATTCTGATTTCGAAAGTTGTTTACTGAACCTGATGCATGTGTTTCTCC CATTTCTATTCCATGTAAACTTATTTAAAATAACAAAGAAATGACGTAGGTGAGGGAGAAAGTTT TTAATATTTTTTTCAAATGGAAGTTTTCCTAAAATTGGTTTTTGACCAGAATAGCTTCTAGAGTT CCAGAATATCAACTTTTTGAGGTGCACGGCAAAATTTGTTGAGTTTGACTAACATTAAGAATGAA TTCTGATTTACTTCTAGTCGTGATAATTATCCCACAGATGAAAAA Found at i:10236745 original size:11 final size:10 Alignment explanation
Indices: 10236729--10236749 Score: 33 Period size: 11 Copynumber: 2.0 Consensus size: 10 10236719 TCAGAAACTT 10236729 TCGAAGCAAGG 1 TCGAAG-AAGG 10236740 TCGAAGAAGG 1 TCGAAGAAGG 10236750 CATGATTTTT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 10 4 0.40 11 6 0.60 ACGTcount: A:0.38, C:0.14, G:0.38, T:0.10 Consensus pattern (10 bp): TCGAAGAAGG Left flanking sequence: Indices 10236229 -- 10236728 AAAAAATTCCATTTATAGGAATGTTGATTCTCATTATGAAAACTTCAATTCTGATTTCGAAAGTT GTTTACTGAACCTGATGCATGTGTTTCTCCCATTTCTATTCCATGTAAACTTATTTAAAATAACA AAGAAATGACGTAGGTGAGGGAGAAAGTTTTTAATATTTTTTTCAAATGGAAGTTTTCCTAAAAT TGGTTTTTGACCAGAATAGCTTCTAGAGTTCCAGAATATCAACTTTTTGAGGTGCACGGCAAAAT TTGTTGAGTTTGACTAACATTAAGAATGAATTCTGATTTACTTCTAGTCGTGATAATTATCCCAC AGATGAAAAAGCTCAGGTAAAATGCAAGGGTGAGTCAGTTTAACGGTCGATATTCCAAAAGTATG TATATATATATATATATATAAATTCAAAACATTTCTGTGGATCAAAAATATTATTTTACTGTCAA AAATTTAGAGACTGAATATTATAGTTATAAGCACTTCAGAAACTT Right flanking sequence: Indices 10236750 -- 10237249 CATGATTTTTATCACATTGCCCCCTTTAATACTTTAATCAAAAAATCAAACAGTGAATCTGTATT ATTTGAAATAGGAAACTTGTGAGCTTCTTCTGTTGTCTACTGAAAAAAAGGGACTTTGTGGCGTC TGTGTACTTTAACATATGACTTATCATGCTTTTTTATGACTTAGTTCTGGTTTTGGATTTTATCA AAACATGTATTCCCATGGCCCATTGGGTCTCACAAATAAGAAGGAACCATAATCAAATATTTTTT GCAAAGGACATTGAATATTTTTCTTGAGTGTTCTGTCTGTTGTTTTTAAATCATGATTAGGTTTC ACAAAAAATTTAAGATTTTTTGTCTGACAATGCATCGTTCCAACTACTAAATTAAAAAACTTTTA GCAACAAAGATTATTTTAAATTTTTTCAAACCATGAACAGACACAGAACACAATTTTGATGCTTG AAAAGGAACTAATAGAGTGAATGATTTTTTATAATTGGATTCAAA i:10238205 original size:7 final size:7 Alignment explanation
Indices: 10238193--10238206 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10238183 ATTAACCAAA 10238193 TTCGCCG 1 TTCGCCG 10238200 TTCGCCG 1 TTCGCCG 10238207 ATGATTTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29 Consensus pattern (7 bp): TTCGCCG Left flanking sequence: Indices 10237693 -- 10238192 AGCCAAATATTTTATATGATGATTGTTTAAATATTCAATGATTGATTGTATATCCAATGAATCCT AGGAAATATGATAATGGTAGAATTATAAACCACATTGGAATAAATATATATACTAATAAACTAAA GCTCTTGATTTTCTATGCATACTCTCTTGAATACATTTGAATAGAAATACAAATACAATTAAATA CAAGTTACAATAGGAACAGAGATCAGATTCTTTGTAGGAAAGATACTTTCTGATCCTACCGTAAC CTACCGTACTTCTTACGTTGATTACTGAAAGTTTGCAGCGGAATATTGGAAGTTATGTATATACG ATAATAAAGAAGTTGTGGTGCCGACAATTCTAAAGCTTTAAATATGTATCGCTCAAAAAACCCAT ATACCACATGTATTTAGCAGGTTGAAATATTATAATAAACAATTTTTCAAAATTCTAGGAAGTTG GTATGTATCAGGGGTGTGCGGCGAATTCGGCGAATATTAACCAAA Right flanking sequence: Indices 10238207 -- 10238706 ATGATTTTTTCGATTCGCCGAGTTCGCCGTTAGCCGAAAAATTGAAAATCGGCGTTCGCCGAATT CGCCGTTCGCCGAAAAATCGCCGAAAATTTGCCGAATTCGCGGAAATTTTTCCAAATTCGCCGAG CGAAATTCGCCGTTCGCCGAAAATTTCAAAAATCGGCGATCGCCGAATTCGCCGAAAATTTTTAA AACCGGCGATCGCCGAAAAAATTCGATTCGCCGCACACCCCTGGTATGTATGATAATGAATGAAA AATGTGCTCAGATCGACCAAAAATCACAAAATTTTCTTAGAATTCGGTTCTGCTCTTGGTGTCTC AATTTTGATCCGATGCCTGACAATTGTGATTTCATTAAACTTAAAGTTGTCGTTTCAGTGCACAA TTTTTCTTCAATGTATTTGTACTTGCTCTAATCAGAAATCTAGTTTATATCACGAGTTTAGATTC TGAAAAAGGAAAATTCAAATTGATTTTAATTCAGAATTCTTGATC Found at i:10238275 original size:9 final size:9 Alignment explanation
Indices: 10238261--10238316 Score: 41 Period size: 9 Copynumber: 6.0 Consensus size: 9 10238251 AAAATCGGCG 10238261 TTCGCCGAA 1 TTCGCCGAA 10238270 TTCGCCG-- 1 TTCGCCGAA 10238277 TTCGCCGAAAA 1 TTCGCCG--AA * 10238288 ATCGCCGAAAA 1 TTCGCCG--AA * 10238299 TTTGCCGAA 1 TTCGCCGAA * 10238308 TTCGCGGAA 1 TTCGCCGAA 10238317 ATTTTTCCAA Statistics Matches: 38, Mismatches: 5, Indels: 8 0.75 0.10 0.16 Matches are distributed among these distances: 7 7 0.18 9 16 0.42 11 15 0.39 ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21 Consensus pattern (9 bp): TTCGCCGAA Left flanking sequence: Indices 10237761 -- 10238260 AAATATGATAATGGTAGAATTATAAACCACATTGGAATAAATATATATACTAATAAACTAAAGCT CTTGATTTTCTATGCATACTCTCTTGAATACATTTGAATAGAAATACAAATACAATTAAATACAA GTTACAATAGGAACAGAGATCAGATTCTTTGTAGGAAAGATACTTTCTGATCCTACCGTAACCTA CCGTACTTCTTACGTTGATTACTGAAAGTTTGCAGCGGAATATTGGAAGTTATGTATATACGATA ATAAAGAAGTTGTGGTGCCGACAATTCTAAAGCTTTAAATATGTATCGCTCAAAAAACCCATATA CCACATGTATTTAGCAGGTTGAAATATTATAATAAACAATTTTTCAAAATTCTAGGAAGTTGGTA TGTATCAGGGGTGTGCGGCGAATTCGGCGAATATTAACCAAATTCGCCGTTCGCCGATGATTTTT TCGATTCGCCGAGTTCGCCGTTAGCCGAAAAATTGAAAATCGGCG Right flanking sequence: Indices 10238317 -- 10238816 ATTTTTCCAAATTCGCCGAGCGAAATTCGCCGTTCGCCGAAAATTTCAAAAATCGGCGATCGCCG AATTCGCCGAAAATTTTTAAAACCGGCGATCGCCGAAAAAATTCGATTCGCCGCACACCCCTGGT ATGTATGATAATGAATGAAAAATGTGCTCAGATCGACCAAAAATCACAAAATTTTCTTAGAATTC GGTTCTGCTCTTGGTGTCTCAATTTTGATCCGATGCCTGACAATTGTGATTTCATTAAACTTAAA GTTGTCGTTTCAGTGCACAATTTTTCTTCAATGTATTTGTACTTGCTCTAATCAGAAATCTAGTT TATATCACGAGTTTAGATTCTGAAAAAGGAAAATTCAAATTGATTTTAATTCAGAATTCTTGATC CTTGGCGGCAAATGATGTCTGTTTAAAAAAAATTACAGTTAAATTTTTTTTATGAATACCAACTT TTAAAGATGATACGAGTATCGGAAAATGGAGCAATAAAATATTCA Found at i:10238282 original size:7 final size:7 Alignment explanation
Indices: 10238255--10238283 Score: 33 Period size: 7 Copynumber: 3.9 Consensus size: 7 10238245 AAATTGAAAA * 10238255 TCGGCGT 1 TCGCCGT 10238262 TCGCCGAAT 1 TCGCCG--T 10238271 TCGCCGT 1 TCGCCGT 10238278 TCGCCG 1 TCGCCG 10238284 AAAAATCGCC Statistics Matches: 19, Mismatches: 1, Indels: 4 0.79 0.04 0.17 Matches are distributed among these distances: 7 12 0.63 9 7 0.37 ACGTcount: A:0.07, C:0.38, G:0.31, T:0.24 Consensus pattern (7 bp): TCGCCGT Left flanking sequence: Indices 10237755 -- 10238254 CCTAGGAAATATGATAATGGTAGAATTATAAACCACATTGGAATAAATATATATACTAATAAACT AAAGCTCTTGATTTTCTATGCATACTCTCTTGAATACATTTGAATAGAAATACAAATACAATTAA ATACAAGTTACAATAGGAACAGAGATCAGATTCTTTGTAGGAAAGATACTTTCTGATCCTACCGT AACCTACCGTACTTCTTACGTTGATTACTGAAAGTTTGCAGCGGAATATTGGAAGTTATGTATAT ACGATAATAAAGAAGTTGTGGTGCCGACAATTCTAAAGCTTTAAATATGTATCGCTCAAAAAACC CATATACCACATGTATTTAGCAGGTTGAAATATTATAATAAACAATTTTTCAAAATTCTAGGAAG TTGGTATGTATCAGGGGTGTGCGGCGAATTCGGCGAATATTAACCAAATTCGCCGTTCGCCGATG ATTTTTTCGATTCGCCGAGTTCGCCGTTAGCCGAAAAATTGAAAA Right flanking sequence: Indices 10238284 -- 10238783 AAAAATCGCCGAAAATTTGCCGAATTCGCGGAAATTTTTCCAAATTCGCCGAGCGAAATTCGCCG TTCGCCGAAAATTTCAAAAATCGGCGATCGCCGAATTCGCCGAAAATTTTTAAAACCGGCGATCG CCGAAAAAATTCGATTCGCCGCACACCCCTGGTATGTATGATAATGAATGAAAAATGTGCTCAGA TCGACCAAAAATCACAAAATTTTCTTAGAATTCGGTTCTGCTCTTGGTGTCTCAATTTTGATCCG ATGCCTGACAATTGTGATTTCATTAAACTTAAAGTTGTCGTTTCAGTGCACAATTTTTCTTCAAT GTATTTGTACTTGCTCTAATCAGAAATCTAGTTTATATCACGAGTTTAGATTCTGAAAAAGGAAA ATTCAAATTGATTTTAATTCAGAATTCTTGATCCTTGGCGGCAAATGATGTCTGTTTAAAAAAAA TTACAGTTAAATTTTTTTTATGAATACCAACTTTTAAAGATGATA Found at i:10238354 original size:7 final size:7 Alignment explanation
Indices: 10238342--10238355 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10238332 CCGAGCGAAA 10238342 TTCGCCG 1 TTCGCCG 10238349 TTCGCCG 1 TTCGCCG 10238356 AAAATTTCAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29 Consensus pattern (7 bp): TTCGCCG Left flanking sequence: Indices 10237842 -- 10238341 TACTCTCTTGAATACATTTGAATAGAAATACAAATACAATTAAATACAAGTTACAATAGGAACAG AGATCAGATTCTTTGTAGGAAAGATACTTTCTGATCCTACCGTAACCTACCGTACTTCTTACGTT GATTACTGAAAGTTTGCAGCGGAATATTGGAAGTTATGTATATACGATAATAAAGAAGTTGTGGT GCCGACAATTCTAAAGCTTTAAATATGTATCGCTCAAAAAACCCATATACCACATGTATTTAGCA GGTTGAAATATTATAATAAACAATTTTTCAAAATTCTAGGAAGTTGGTATGTATCAGGGGTGTGC GGCGAATTCGGCGAATATTAACCAAATTCGCCGTTCGCCGATGATTTTTTCGATTCGCCGAGTTC GCCGTTAGCCGAAAAATTGAAAATCGGCGTTCGCCGAATTCGCCGTTCGCCGAAAAATCGCCGAA AATTTGCCGAATTCGCGGAAATTTTTCCAAATTCGCCGAGCGAAA Right flanking sequence: Indices 10238356 -- 10238855 AAAATTTCAAAAATCGGCGATCGCCGAATTCGCCGAAAATTTTTAAAACCGGCGATCGCCGAAAA AATTCGATTCGCCGCACACCCCTGGTATGTATGATAATGAATGAAAAATGTGCTCAGATCGACCA AAAATCACAAAATTTTCTTAGAATTCGGTTCTGCTCTTGGTGTCTCAATTTTGATCCGATGCCTG ACAATTGTGATTTCATTAAACTTAAAGTTGTCGTTTCAGTGCACAATTTTTCTTCAATGTATTTG TACTTGCTCTAATCAGAAATCTAGTTTATATCACGAGTTTAGATTCTGAAAAAGGAAAATTCAAA TTGATTTTAATTCAGAATTCTTGATCCTTGGCGGCAAATGATGTCTGTTTAAAAAAAATTACAGT TAAATTTTTTTTATGAATACCAACTTTTAAAGATGATACGAGTATCGGAAAATGGAGCAATAAAA TATTCAACTTCTGAAATGAAACAAAACGAAAACAAGCAACATAAT Found at