TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10573729 original size:8 final size:8 Alignment explanation
Indices: 10573718--10573744 Score: 38 Period size: 8 Copynumber: 3.2 Consensus size: 8 10573708 GTAAATATTT 10573718 AAAAATAAA 1 AAAAAT-AA 10573727 AAAAATAA 1 AAAAATAA * 10573735 ATAAATAA 1 AAAAATAA 10573743 AA 1 AA 10573745 GATCTTATCA Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 8 10 0.62 9 6 0.38 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (8 bp): AAAAATAA Left flanking sequence: Indices 10573218 -- 10573717 ATGATTATTAGCTTTGCAAAAAATTTGATTTTTTTTTTATTTTGAGTCAAAAAGCGGTGAAAATT CATTTTTTACCACTTGGATGGAAGTCATCGATCAAAAACTTTTTTGCTTCCAGTTTTATGTTCTA ATCAGGTTTAAAATATTCTTATTCCAACATTTTAAGGGTTCGAATATACGAATGTGCGTTAGATT TTTTTAAAAGTTGCACAAACTCACTGAAATAATTGTCAAAAATTTTTGAAACGTTTTATTCTGAT ATTTGGCCATTTTAGCATCAAAGGAATGGTTTTCATTCATTTCCTTACTGACCGTAATCCATGTT TAAGATAAATTCCATTTAAAGGAAGATTTTTTTTGGTAGTATTCGTTTTTCTACATACCGTAGGC AGATCTTCCGCATCTTGTCTTTCATCTCCAATTCCAACTCCTCCATCGGCGTGACTCAAACGTAG AGCTCTTTTGATTGCCTGATATCGACGATAGGACTGTAAATATTT Right flanking sequence: Indices 10573745 -- 10574244 GATCTTATCACCTCTCCAGCAGATTGACAATAACTATCGAAAGCCGAATCAGCGAGCCGAGCGAG TCTTTTAGATTGTGGTACCGGTTGTGTTGGAACAAAACTGTCACCCCAATGGCGTGTGAAGAACG TTGTTAGGTCACTTCGAGATCGTGATGGATCGGCAAGAACTGCTGACAGATTTTGAGTGAAACTG AAAATTTAGATATTGGAAGTGTCAATTGTTTCAACTTAAGAAATACTGTAATTATCCTAGTTTCC ACATCAAAGTCTCAATATAAATTAACTTTCTGCCCATGTTTACGCTAAATCTATAGGTTATTTCT TCCTTTCCCTATTTTCATCAAATTCTCGTTCGCTTCACTGTTCTATTTTGCCCATTTCTAAGTGG ATGGAGTGTCCCGTTTGCCTACCATCAATTTCTGCGCCTTTGATATCAAATTCAAACCAAAGGTC ATCCAATTCTTTTTCTCTCCGTTTTTTACCTGAAGACTGTCCCGG Found at i:10573732 original size:9 final size:9 Alignment explanation
Indices: 10573718--10573744 Score: 40 Period size: 9 Copynumber: 3.1 Consensus size: 9 10573708 GTAAATATTT 10573718 AAAAATAAA 1 AAAAATAAA 10573727 AAAAAT-AA 1 AAAAATAAA * 10573735 ATAAATAAA 1 AAAAATAAA 10573744 A 1 A 10573745 GATCTTATCA Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 8 7 0.44 9 9 0.56 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (9 bp): AAAAATAAA Left flanking sequence: Indices 10573218 -- 10573717 ATGATTATTAGCTTTGCAAAAAATTTGATTTTTTTTTTATTTTGAGTCAAAAAGCGGTGAAAATT CATTTTTTACCACTTGGATGGAAGTCATCGATCAAAAACTTTTTTGCTTCCAGTTTTATGTTCTA ATCAGGTTTAAAATATTCTTATTCCAACATTTTAAGGGTTCGAATATACGAATGTGCGTTAGATT TTTTTAAAAGTTGCACAAACTCACTGAAATAATTGTCAAAAATTTTTGAAACGTTTTATTCTGAT ATTTGGCCATTTTAGCATCAAAGGAATGGTTTTCATTCATTTCCTTACTGACCGTAATCCATGTT TAAGATAAATTCCATTTAAAGGAAGATTTTTTTTGGTAGTATTCGTTTTTCTACATACCGTAGGC AGATCTTCCGCATCTTGTCTTTCATCTCCAATTCCAACTCCTCCATCGGCGTGACTCAAACGTAG AGCTCTTTTGATTGCCTGATATCGACGATAGGACTGTAAATATTT Right flanking sequence: Indices 10573745 -- 10574244 GATCTTATCACCTCTCCAGCAGATTGACAATAACTATCGAAAGCCGAATCAGCGAGCCGAGCGAG TCTTTTAGATTGTGGTACCGGTTGTGTTGGAACAAAACTGTCACCCCAATGGCGTGTGAAGAACG TTGTTAGGTCACTTCGAGATCGTGATGGATCGGCAAGAACTGCTGACAGATTTTGAGTGAAACTG AAAATTTAGATATTGGAAGTGTCAATTGTTTCAACTTAAGAAATACTGTAATTATCCTAGTTTCC ACATCAAAGTCTCAATATAAATTAACTTTCTGCCCATGTTTACGCTAAATCTATAGGTTATTTCT TCCTTTCCCTATTTTCATCAAATTCTCGTTCGCTTCACTGTTCTATTTTGCCCATTTCTAAGTGG ATGGAGTGTCCCGTTTGCCTACCATCAATTTCTGCGCCTTTGATATCAAATTCAAACCAAAGGTC ATCCAATTCTTTTTCTCTCCGTTTTTTACCTGAAGACTGTCCCGG Found at i:10577864 original size:8 final size:8 Alignment explanation
Indices: 10577847--10577864 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 10577837 CAATTACTGG * 10577847 TTCTTAAT 1 TTCATAAT 10577855 TTCATAAT 1 TTCATAAT 10577863 TT 1 TT 10577865 TAAATTAGTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61 Consensus pattern (8 bp): TTCATAAT Left flanking sequence: Indices 10577347 -- 10577846 TATTCTTCTCATTTCTTTCAATTATTTTCATTCACTCGAAAGACACTGCATCTGTGCATTGAAAT TCACGAGAACACATTACTTTCTTATTTTTGAACACTTTTCCTACACAAATCTTTTCCACTTCAAA AAACTTTTCAAACACGTTTCCACTCTAATAAATGCACAGGACGAGGGAGACGAGGATGGTGACTT CACAATTGACAACGGAACTGAGAGAAAGAAGATGTCATTGGCAGAGAATCCGTTCGCCGAATTTT TCCCAGCCGGATCACCGGAACAACCGAAGAAGATGGGCTCTAAGCCAAATTCACGTCAAGCATCT CTTGATAAGGCAAGCACTGTCACATGAGTCACTTTTCACCTCTATTTTACTATACTAAAATTATC TTAAATTTGATAATTTTTCAGGATGGAGGCAATGCACAAGGATACAGTTCTAATCCACGAGCTTA AAAACGTTGACTATATTGTTAGATCGATCAAACTTCAATTACTGG Right flanking sequence: Indices 10577865 -- 10578364 TAAATTAGTTGTTCCTCTCAGGTTGTTAATCATCTTCTTTTTCTCTTTTTCCCTCACTTTTTTTT TCCTTTTGTTCCCCCATTCCCAATAATAACCTATTCCTGTGATCTACATGATTCTCTCTCTTGAA ATATATTCGAAAACGAAATAAAACGAACTCACCTGTGAAGAGTGAATTTTTTCTTTTCAATTGTT GGAGTATCTCGATCACTTGTCAATCGTATACTTCTCAAACTAGCTGTTTCTTCACTATCTTCAGT ATAACTTGCTACCAATGAAGATGTTGGACTTGAATATCCAGCTGGTTGAGAAGAAGTGTGACAAC GACGAATGTGGGCTTCAAAATCAAGATCACATACTCCTTCCAGTGGTAGTTTCTGACATACTCCA TGTTCTCCGTATCTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAAATATAAAACCGTTC TTCAAAATTAACAAAAAATCTTGTTATTGATTTTTGAACAATCGA Found at i:10577913 original size:8 final size:8 Alignment explanation
Indices: 10577900--10577915 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10577890 TTAATCATCT 10577900 TCTTTTTC 1 TCTTTTTC 10577908 TCTTTTTC 1 TCTTTTTC 10577916 CCTCACTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75 Consensus pattern (8 bp): TCTTTTTC Left flanking sequence: Indices 10577400 -- 10577899 GTGCATTGAAATTCACGAGAACACATTACTTTCTTATTTTTGAACACTTTTCCTACACAAATCTT TTCCACTTCAAAAAACTTTTCAAACACGTTTCCACTCTAATAAATGCACAGGACGAGGGAGACGA GGATGGTGACTTCACAATTGACAACGGAACTGAGAGAAAGAAGATGTCATTGGCAGAGAATCCGT TCGCCGAATTTTTCCCAGCCGGATCACCGGAACAACCGAAGAAGATGGGCTCTAAGCCAAATTCA CGTCAAGCATCTCTTGATAAGGCAAGCACTGTCACATGAGTCACTTTTCACCTCTATTTTACTAT ACTAAAATTATCTTAAATTTGATAATTTTTCAGGATGGAGGCAATGCACAAGGATACAGTTCTAA TCCACGAGCTTAAAAACGTTGACTATATTGTTAGATCGATCAAACTTCAATTACTGGTTCTTAAT TTCATAATTTTAAATTAGTTGTTCCTCTCAGGTTGTTAATCATCT Right flanking sequence: Indices 10577916 -- 10578415 CCTCACTTTTTTTTTCCTTTTGTTCCCCCATTCCCAATAATAACCTATTCCTGTGATCTACATGA TTCTCTCTCTTGAAATATATTCGAAAACGAAATAAAACGAACTCACCTGTGAAGAGTGAATTTTT TCTTTTCAATTGTTGGAGTATCTCGATCACTTGTCAATCGTATACTTCTCAAACTAGCTGTTTCT TCACTATCTTCAGTATAACTTGCTACCAATGAAGATGTTGGACTTGAATATCCAGCTGGTTGAGA AGAAGTGTGACAACGACGAATGTGGGCTTCAAAATCAAGATCACATACTCCTTCCAGTGGTAGTT TCTGACATACTCCATGTTCTCCGTATCTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAA ATATAAAACCGTTCTTCAAAATTAACAAAAAATCTTGTTATTGATTTTTGAACAATCGAAAAATT TCGGTTTTCAATTTTTCAAATTTTGGTTTTTTTTCTTATTTTTAG Found at i:10577941 original size:9 final size:9 Alignment explanation
Indices: 10577924--10577941 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 10577914 TCCCTCACTT * 10577924 TTTTTTTCC 1 TTTTGTTCC 10577933 TTTTGTTCC 1 TTTTGTTCC 10577942 CCCATTCCCA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.00, C:0.22, G:0.06, T:0.72 Consensus pattern (9 bp): TTTTGTTCC Left flanking sequence: Indices 10577424 -- 10577923 ATTACTTTCTTATTTTTGAACACTTTTCCTACACAAATCTTTTCCACTTCAAAAAACTTTTCAAA CACGTTTCCACTCTAATAAATGCACAGGACGAGGGAGACGAGGATGGTGACTTCACAATTGACAA CGGAACTGAGAGAAAGAAGATGTCATTGGCAGAGAATCCGTTCGCCGAATTTTTCCCAGCCGGAT CACCGGAACAACCGAAGAAGATGGGCTCTAAGCCAAATTCACGTCAAGCATCTCTTGATAAGGCA AGCACTGTCACATGAGTCACTTTTCACCTCTATTTTACTATACTAAAATTATCTTAAATTTGATA ATTTTTCAGGATGGAGGCAATGCACAAGGATACAGTTCTAATCCACGAGCTTAAAAACGTTGACT ATATTGTTAGATCGATCAAACTTCAATTACTGGTTCTTAATTTCATAATTTTAAATTAGTTGTTC CTCTCAGGTTGTTAATCATCTTCTTTTTCTCTTTTTCCCTCACTT Right flanking sequence: Indices 10577942 -- 10578441 CCCATTCCCAATAATAACCTATTCCTGTGATCTACATGATTCTCTCTCTTGAAATATATTCGAAA ACGAAATAAAACGAACTCACCTGTGAAGAGTGAATTTTTTCTTTTCAATTGTTGGAGTATCTCGA TCACTTGTCAATCGTATACTTCTCAAACTAGCTGTTTCTTCACTATCTTCAGTATAACTTGCTAC CAATGAAGATGTTGGACTTGAATATCCAGCTGGTTGAGAAGAAGTGTGACAACGACGAATGTGGG CTTCAAAATCAAGATCACATACTCCTTCCAGTGGTAGTTTCTGACATACTCCATGTTCTCCGTAT CTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAAATATAAAACCGTTCTTCAAAATTAAC AAAAAATCTTGTTATTGATTTTTGAACAATCGAAAAATTTCGGTTTTCAATTTTTCAAATTTTGG TTTTTTTTCTTATTTTTAGAAGAAATTTGTTTATTTTTCAAATTT Found at i:10578122 original size:9 final size:9 Alignment explanation
Indices: 10578108--10578126 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10578098 ACTAGCTGTT 10578108 TCTTCACTA 1 TCTTCACTA * 10578117 TCTTCAGTA 1 TCTTCACTA 10578126 T 1 T 10578127 AACTTGCTAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.21, C:0.26, G:0.05, T:0.47 Consensus pattern (9 bp): TCTTCACTA Left flanking sequence: Indices 10577608 -- 10578107 CCCAGCCGGATCACCGGAACAACCGAAGAAGATGGGCTCTAAGCCAAATTCACGTCAAGCATCTC TTGATAAGGCAAGCACTGTCACATGAGTCACTTTTCACCTCTATTTTACTATACTAAAATTATCT TAAATTTGATAATTTTTCAGGATGGAGGCAATGCACAAGGATACAGTTCTAATCCACGAGCTTAA AAACGTTGACTATATTGTTAGATCGATCAAACTTCAATTACTGGTTCTTAATTTCATAATTTTAA ATTAGTTGTTCCTCTCAGGTTGTTAATCATCTTCTTTTTCTCTTTTTCCCTCACTTTTTTTTTCC TTTTGTTCCCCCATTCCCAATAATAACCTATTCCTGTGATCTACATGATTCTCTCTCTTGAAATA TATTCGAAAACGAAATAAAACGAACTCACCTGTGAAGAGTGAATTTTTTCTTTTCAATTGTTGGA GTATCTCGATCACTTGTCAATCGTATACTTCTCAAACTAGCTGTT Right flanking sequence: Indices 10578127 -- 10578626 AACTTGCTACCAATGAAGATGTTGGACTTGAATATCCAGCTGGTTGAGAAGAAGTGTGACAACGA CGAATGTGGGCTTCAAAATCAAGATCACATACTCCTTCCAGTGGTAGTTTCTGACATACTCCATG TTCTCCGTATCTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAAATATAAAACCGTTCTT CAAAATTAACAAAAAATCTTGTTATTGATTTTTGAACAATCGAAAAATTTCGGTTTTCAATTTTT CAAATTTTGGTTTTTTTTCTTATTTTTAGAAGAAATTTGTTTATTTTTCAAATTTAAATTTAAAA AATTGAATTTTATGGTTAGTTTTCTGAAAGTTTTTATTTTATATGTTTCGATTTTGAGTTTCTTG AGCAAAAATACTTTTTTTTCATTTTCGATTTTTAATTTTAAATAAAAAAAACACAATTGTTTCTT TTTTTCATCAATATAAACAAAATGTGATTTTTAAAAAAGTAATTT Found at i:10578394 original size:9 final size:8 Alignment explanation
Indices: 10578375--10578394 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 10578365 AAAATTTCGG 10578375 TTTTCAAT 1 TTTTCAAT * 10578383 TTTTCAAA 1 TTTTCAAT 10578391 TTTT 1 TTTT 10578395 GGTTTTTTTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65 Consensus pattern (8 bp): TTTTCAAT Left flanking sequence: Indices 10577875 -- 10578374 GTTCCTCTCAGGTTGTTAATCATCTTCTTTTTCTCTTTTTCCCTCACTTTTTTTTTCCTTTTGTT CCCCCATTCCCAATAATAACCTATTCCTGTGATCTACATGATTCTCTCTCTTGAAATATATTCGA AAACGAAATAAAACGAACTCACCTGTGAAGAGTGAATTTTTTCTTTTCAATTGTTGGAGTATCTC GATCACTTGTCAATCGTATACTTCTCAAACTAGCTGTTTCTTCACTATCTTCAGTATAACTTGCT ACCAATGAAGATGTTGGACTTGAATATCCAGCTGGTTGAGAAGAAGTGTGACAACGACGAATGTG GGCTTCAAAATCAAGATCACATACTCCTTCCAGTGGTAGTTTCTGACATACTCCATGTTCTCCGT ATCTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAAATATAAAACCGTTCTTCAAAATTA ACAAAAAATCTTGTTATTGATTTTTGAACAATCGAAAAATTTCGG Right flanking sequence: Indices 10578395 -- 10578894 GGTTTTTTTTCTTATTTTTAGAAGAAATTTGTTTATTTTTCAAATTTAAATTTAAAAAATTGAAT TTTATGGTTAGTTTTCTGAAAGTTTTTATTTTATATGTTTCGATTTTGAGTTTCTTGAGCAAAAA TACTTTTTTTTCATTTTCGATTTTTAATTTTAAATAAAAAAAACACAATTGTTTCTTTTTTTCAT CAATATAAACAAAATGTGATTTTTAAAAAAGTAATTTTATGGTTTTTTTTTATTTTCCAGAAAAT CGAAAAAATTTATTTTTTCGATTTTTCGATTCTCTTGAAAAAATATAGTTAACGAAAAATGTTCG ATGACACCCTTGACTGTGATTTAAAATTATATTTAGAATTTTTATTTTTCAAAATTTTTTAAAAC ATACCTACAAAGAAAGCTACCACCTTCTTTTGTCGTATGATCTTGTCGAATATGTCGTGCAAACT CGGAAGCCGTCATAAGCTCGATAATTGGCTGACAATAATCACATA Found at i:10578554 original size:7 final size:7 Alignment explanation
Indices: 10578531--10578559 Score: 30 Period size: 7 Copynumber: 4.1 Consensus size: 7 10578521 AAAATACTTT * 10578531 TTTTTCA 1 TTTTTAA ** 10578538 TTTTCGA 1 TTTTTAA 10578545 TTTTTAA 1 TTTTTAA * 10578552 TTTTAAA 1 TTTTTAA 10578559 T 1 T 10578560 AAAAAAAACA Statistics Matches: 17, Mismatches: 5, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 7 17 1.00 ACGTcount: A:0.24, C:0.07, G:0.03, T:0.66 Consensus pattern (7 bp): TTTTTAA Left flanking sequence: Indices 10578031 -- 10578530 GAAGAGTGAATTTTTTCTTTTCAATTGTTGGAGTATCTCGATCACTTGTCAATCGTATACTTCTC AAACTAGCTGTTTCTTCACTATCTTCAGTATAACTTGCTACCAATGAAGATGTTGGACTTGAATA TCCAGCTGGTTGAGAAGAAGTGTGACAACGACGAATGTGGGCTTCAAAATCAAGATCACATACTC CTTCCAGTGGTAGTTTCTGACATACTCCATGTTCTCCGTATCTAAATAATTAGAATATTTCAAAC GATAAATTGCAGAAAATATAAAACCGTTCTTCAAAATTAACAAAAAATCTTGTTATTGATTTTTG AACAATCGAAAAATTTCGGTTTTCAATTTTTCAAATTTTGGTTTTTTTTCTTATTTTTAGAAGAA ATTTGTTTATTTTTCAAATTTAAATTTAAAAAATTGAATTTTATGGTTAGTTTTCTGAAAGTTTT TATTTTATATGTTTCGATTTTGAGTTTCTTGAGCAAAAATACTTT Right flanking sequence: Indices 10578560 -- 10579059 AAAAAAAACACAATTGTTTCTTTTTTTCATCAATATAAACAAAATGTGATTTTTAAAAAAGTAAT TTTATGGTTTTTTTTTATTTTCCAGAAAATCGAAAAAATTTATTTTTTCGATTTTTCGATTCTCT TGAAAAAATATAGTTAACGAAAAATGTTCGATGACACCCTTGACTGTGATTTAAAATTATATTTA GAATTTTTATTTTTCAAAATTTTTTAAAACATACCTACAAAGAAAGCTACCACCTTCTTTTGTCG TATGATCTTGTCGAATATGTCGTGCAAACTCGGAAGCCGTCATAAGCTCGATAATTGGCTGACAA TAATCACATATTCTTGGATAACCAATCTCCGGTTGAATTTTGAGTGAAGCTCTTGATGAACTTGC AGATATAAGACCTACTGTTCGGTCATCCATTGATTTCATTTGTGAATCATTTCTGGAAATAAGAA TTAGTAAAAAACTAAAAATTTTGATAGTAAATATAATAATCTGCA Found at i:10578678 original size:9 final size:9 Alignment explanation
Indices: 10578666--10578685 Score: 33 Period size: 8 Copynumber: 2.3 Consensus size: 9 10578656 GAAAAAATTT 10578666 ATTTTTTCG 1 ATTTTTTCG 10578675 A-TTTTTCG 1 ATTTTTTCG 10578683 ATT 1 ATT 10578686 CTCTTGAAAA Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 8 8 0.80 9 2 0.20 ACGTcount: A:0.15, C:0.10, G:0.10, T:0.65 Consensus pattern (9 bp): ATTTTTTCG Left flanking sequence: Indices 10578166 -- 10578665 CTGGTTGAGAAGAAGTGTGACAACGACGAATGTGGGCTTCAAAATCAAGATCACATACTCCTTCC AGTGGTAGTTTCTGACATACTCCATGTTCTCCGTATCTAAATAATTAGAATATTTCAAACGATAA ATTGCAGAAAATATAAAACCGTTCTTCAAAATTAACAAAAAATCTTGTTATTGATTTTTGAACAA TCGAAAAATTTCGGTTTTCAATTTTTCAAATTTTGGTTTTTTTTCTTATTTTTAGAAGAAATTTG TTTATTTTTCAAATTTAAATTTAAAAAATTGAATTTTATGGTTAGTTTTCTGAAAGTTTTTATTT TATATGTTTCGATTTTGAGTTTCTTGAGCAAAAATACTTTTTTTTCATTTTCGATTTTTAATTTT AAATAAAAAAAACACAATTGTTTCTTTTTTTCATCAATATAAACAAAATGTGATTTTTAAAAAAG TAATTTTATGGTTTTTTTTTATTTTCCAGAAAATCGAAAAAATTT Right flanking sequence: Indices 10578686 -- 10579185 CTCTTGAAAAAATATAGTTAACGAAAAATGTTCGATGACACCCTTGACTGTGATTTAAAATTATA TTTAGAATTTTTATTTTTCAAAATTTTTTAAAACATACCTACAAAGAAAGCTACCACCTTCTTTT GTCGTATGATCTTGTCGAATATGTCGTGCAAACTCGGAAGCCGTCATAAGCTCGATAATTGGCTG ACAATAATCACATATTCTTGGATAACCAATCTCCGGTTGAATTTTGAGTGAAGCTCTTGATGAAC TTGCAGATATAAGACCTACTGTTCGGTCATCCATTGATTTCATTTGTGAATCATTTCTGGAAATA AGAATTAGTAAAAAACTAAAAATTTTGATAGTAAATATAATAATCTGCAAGAGACAGTGTTGAAA TCGGAGAAAAATAAAATTACAAACGTTCAATATTCATTATTATGGCTCACAAAAAAAGAGAATCG GAATAGAAATGGTACTTGAGCAGCACTTAGTGCGAAATAATGGAG Found at i:10578679 original size:8 final size:8 Alignment explanation
Indices: 10578668--10578685 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10578658 AAAAATTTAT 10578668 TTTTTCGA 1 TTTTTCGA 10578676 TTTTTCGA 1 TTTTTCGA 10578684 TT 1 TT 10578686 CTCTTGAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67 Consensus pattern (8 bp): TTTTTCGA Left flanking sequence: Indices 10578168 -- 10578667 GGTTGAGAAGAAGTGTGACAACGACGAATGTGGGCTTCAAAATCAAGATCACATACTCCTTCCAG TGGTAGTTTCTGACATACTCCATGTTCTCCGTATCTAAATAATTAGAATATTTCAAACGATAAAT TGCAGAAAATATAAAACCGTTCTTCAAAATTAACAAAAAATCTTGTTATTGATTTTTGAACAATC GAAAAATTTCGGTTTTCAATTTTTCAAATTTTGGTTTTTTTTCTTATTTTTAGAAGAAATTTGTT TATTTTTCAAATTTAAATTTAAAAAATTGAATTTTATGGTTAGTTTTCTGAAAGTTTTTATTTTA TATGTTTCGATTTTGAGTTTCTTGAGCAAAAATACTTTTTTTTCATTTTCGATTTTTAATTTTAA ATAAAAAAAACACAATTGTTTCTTTTTTTCATCAATATAAACAAAATGTGATTTTTAAAAAAGTA ATTTTATGGTTTTTTTTTATTTTCCAGAAAATCGAAAAAATTTAT Right flanking sequence: Indices 10578686 -- 10579185 CTCTTGAAAAAATATAGTTAACGAAAAATGTTCGATGACACCCTTGACTGTGATTTAAAATTATA TTTAGAATTTTTATTTTTCAAAATTTTTTAAAACATACCTACAAAGAAAGCTACCACCTTCTTTT GTCGTATGATCTTGTCGAATATGTCGTGCAAACTCGGAAGCCGTCATAAGCTCGATAATTGGCTG ACAATAATCACATATTCTTGGATAACCAATCTCCGGTTGAATTTTGAGTGAAGCTCTTGATGAAC TTGCAGATATAAGACCTACTGTTCGGTCATCCATTGATTTCATTTGTGAATCATTTCTGGAAATA AGAATTAGTAAAAAACTAAAAATTTTGATAGTAAATATAATAATCTGCAAGAGACAGTGTTGAAA TCGGAGAAAAATAAAATTACAAACGTTCAATATTCATTATTATGGCTCACAAAAAAAGAGAATCG GAATAGAAATGGTACTTGAGCAGCACTTAGTGCGAAATAATGGAG Found at i:10578778 original size:10 final size:10 Alignment explanation
Indices: 10578763--10578783 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 10578753 TAGAATTTTT 10578763 ATTTTTCAAA 1 ATTTTTCAAA * 10578773 ATTTTTTAAA 1 ATTTTTCAAA 10578783 A 1 A 10578784 CATACCTACA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52 Consensus pattern (10 bp): ATTTTTCAAA Left flanking sequence: Indices 10578263 -- 10578762 GTATCTAAATAATTAGAATATTTCAAACGATAAATTGCAGAAAATATAAAACCGTTCTTCAAAAT TAACAAAAAATCTTGTTATTGATTTTTGAACAATCGAAAAATTTCGGTTTTCAATTTTTCAAATT TTGGTTTTTTTTCTTATTTTTAGAAGAAATTTGTTTATTTTTCAAATTTAAATTTAAAAAATTGA ATTTTATGGTTAGTTTTCTGAAAGTTTTTATTTTATATGTTTCGATTTTGAGTTTCTTGAGCAAA AATACTTTTTTTTCATTTTCGATTTTTAATTTTAAATAAAAAAAACACAATTGTTTCTTTTTTTC ATCAATATAAACAAAATGTGATTTTTAAAAAAGTAATTTTATGGTTTTTTTTTATTTTCCAGAAA ATCGAAAAAATTTATTTTTTCGATTTTTCGATTCTCTTGAAAAAATATAGTTAACGAAAAATGTT CGATGACACCCTTGACTGTGATTTAAAATTATATTTAGAATTTTT Right flanking sequence: Indices 10578784 -- 10579283 CATACCTACAAAGAAAGCTACCACCTTCTTTTGTCGTATGATCTTGTCGAATATGTCGTGCAAAC TCGGAAGCCGTCATAAGCTCGATAATTGGCTGACAATAATCACATATTCTTGGATAACCAATCTC CGGTTGAATTTTGAGTGAAGCTCTTGATGAACTTGCAGATATAAGACCTACTGTTCGGTCATCCA TTGATTTCATTTGTGAATCATTTCTGGAAATAAGAATTAGTAAAAAACTAAAAATTTTGATAGTA AATATAATAATCTGCAAGAGACAGTGTTGAAATCGGAGAAAAATAAAATTACAAACGTTCAATAT TCATTATTATGGCTCACAAAAAAAGAGAATCGGAATAGAAATGGTACTTGAGCAGCACTTAGTGC GAAATAATGGAGCGAGAAGAATGAGAAAGATTCAGAGAGAAAAAAGGCTAAAATATTCCCACCAC TCGCACTAAAACGTCGATAAAATGTAAAGAACATTTGAATATTAA Found at i:10579116 original size:7 final size:7 Alignment explanation
Indices: 10579101--10579116 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 10579091 ATTACAAACG 10579101 TTCAATA 1 TTCAATA * 10579108 TTCATTA 1 TTCAATA 10579115 TT 1 TT 10579117 ATGGCTCACA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56 Consensus pattern (7 bp): TTCAATA Left flanking sequence: Indices 10578601 -- 10579100 AAATGTGATTTTTAAAAAAGTAATTTTATGGTTTTTTTTTATTTTCCAGAAAATCGAAAAAATTT ATTTTTTCGATTTTTCGATTCTCTTGAAAAAATATAGTTAACGAAAAATGTTCGATGACACCCTT GACTGTGATTTAAAATTATATTTAGAATTTTTATTTTTCAAAATTTTTTAAAACATACCTACAAA GAAAGCTACCACCTTCTTTTGTCGTATGATCTTGTCGAATATGTCGTGCAAACTCGGAAGCCGTC ATAAGCTCGATAATTGGCTGACAATAATCACATATTCTTGGATAACCAATCTCCGGTTGAATTTT GAGTGAAGCTCTTGATGAACTTGCAGATATAAGACCTACTGTTCGGTCATCCATTGATTTCATTT GTGAATCATTTCTGGAAATAAGAATTAGTAAAAAACTAAAAATTTTGATAGTAAATATAATAATC TGCAAGAGACAGTGTTGAAATCGGAGAAAAATAAAATTACAAACG Right flanking sequence: Indices 10579117 -- 10579616 ATGGCTCACAAAAAAAGAGAATCGGAATAGAAATGGTACTTGAGCAGCACTTAGTGCGAAATAAT GGAGCGAGAAGAATGAGAAAGATTCAGAGAGAAAAAAGGCTAAAATATTCCCACCACTCGCACTA AAACGTCGATAAAATGTAAAGAACATTTGAATATTAACTTTTTTGACCGAGAAGCTGGGAGTTCT ATTTTATACCTGTGGGATTGTTATCTATGAATTTTACTTTTTTCCTATTCTACATCGCAATAATA CGCATTATACTTAGCACCAAAAATTGTCACGAAGTGAAACAGATGAATAACAGAGAAAATTGAAT TGAATATTGAACAAACCGAGAAAAAAGAGAAGAAAGCAGAGAGAGAGAGAGGTAATACAATTAAT ATTACAAGTATTTAATTCAGAAAATGGGGAGAAAAAGATCAACGGCGTCCTCTGATGAATCTGTA GGCAAGGTATCCAGAGATAGTCAATGCTCCAAGACCGATTGAAAC Found at i:10579477 original size:9 final size:9 Alignment explanation
Indices: 10579459--10579491 Score: 34 Period size: 9 Copynumber: 3.4 Consensus size: 9 10579449 TGAACAAACC * 10579459 GAGAAAAAA 1 GAGAAGAAA 10579468 GAGAAGAAA 1 GAGAAGAAA * 10579477 GCAGAGAGAGA 1 G-AGA-AGAAA 10579488 GAGA 1 GAGA 10579492 GGTAATACAA Statistics Matches: 20, Mismatches: 2, Indels: 3 0.80 0.08 0.12 Matches are distributed among these distances: 9 9 0.45 10 6 0.30 11 5 0.25 ACGTcount: A:0.61, C:0.03, G:0.36, T:0.00 Consensus pattern (9 bp): GAGAAGAAA Left flanking sequence: Indices 10578959 -- 10579458 ACCTACTGTTCGGTCATCCATTGATTTCATTTGTGAATCATTTCTGGAAATAAGAATTAGTAAAA AACTAAAAATTTTGATAGTAAATATAATAATCTGCAAGAGACAGTGTTGAAATCGGAGAAAAATA AAATTACAAACGTTCAATATTCATTATTATGGCTCACAAAAAAAGAGAATCGGAATAGAAATGGT ACTTGAGCAGCACTTAGTGCGAAATAATGGAGCGAGAAGAATGAGAAAGATTCAGAGAGAAAAAA GGCTAAAATATTCCCACCACTCGCACTAAAACGTCGATAAAATGTAAAGAACATTTGAATATTAA CTTTTTTGACCGAGAAGCTGGGAGTTCTATTTTATACCTGTGGGATTGTTATCTATGAATTTTAC TTTTTTCCTATTCTACATCGCAATAATACGCATTATACTTAGCACCAAAAATTGTCACGAAGTGA AACAGATGAATAACAGAGAAAATTGAATTGAATATTGAACAAACC Right flanking sequence: Indices 10579492 -- 10579991 GGTAATACAATTAATATTACAAGTATTTAATTCAGAAAATGGGGAGAAAAAGATCAACGGCGTCC TCTGATGAATCTGTAGGCAAGGTATCCAGAGATAGTCAATGCTCCAAGACCGATTGAAACATACA AAGCTTCGGTTAGCCAAGAATTGCTGAAAGTTATCATTTGGTACTTTTCCGATTTCTGCCCCCCC AAAATGTTTTTTACTCAATATTTTAATTTAAATTCACACGTAAATGTTTATTTCAATACAATTTC AATTTTTAGGCTTATGGGATGATGCAAGTGAATTTCTCGTCATTTCTCGACAAATTTATTTACCA AAATTTCACCAAAAAAATTTATTTACCAAATAATAATATTTAATTTTTTTTTTCTGTCCAGTCAG ATTTTAATAATAAAAATCGCGAATTTTTTAATTTCCGATTAATAAAACTTACTTTCTCGGATCCA AAAGACTAAGTGGTTTACGTGGTGTTCTCGGTACATCGTCAATGA Found at i:10579829 original size:11 final size:10 Alignment explanation
Indices: 10579809--10579830 Score: 35 Period size: 11 Copynumber: 2.1 Consensus size: 10 10579799 CGACAAATTT 10579809 ATTTACCAAA 1 ATTTACCAAA 10579819 ATTTCACCAAA 1 ATTT-ACCAAA 10579830 A 1 A 10579831 AAATTTATTT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 4 0.36 11 7 0.64 ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27 Consensus pattern (10 bp): ATTTACCAAA Left flanking sequence: Indices 10579309 -- 10579808 TCTATTTTATACCTGTGGGATTGTTATCTATGAATTTTACTTTTTTCCTATTCTACATCGCAATA ATACGCATTATACTTAGCACCAAAAATTGTCACGAAGTGAAACAGATGAATAACAGAGAAAATTG AATTGAATATTGAACAAACCGAGAAAAAAGAGAAGAAAGCAGAGAGAGAGAGAGGTAATACAATT AATATTACAAGTATTTAATTCAGAAAATGGGGAGAAAAAGATCAACGGCGTCCTCTGATGAATCT GTAGGCAAGGTATCCAGAGATAGTCAATGCTCCAAGACCGATTGAAACATACAAAGCTTCGGTTA GCCAAGAATTGCTGAAAGTTATCATTTGGTACTTTTCCGATTTCTGCCCCCCCAAAATGTTTTTT ACTCAATATTTTAATTTAAATTCACACGTAAATGTTTATTTCAATACAATTTCAATTTTTAGGCT TATGGGATGATGCAAGTGAATTTCTCGTCATTTCTCGACAAATTT Right flanking sequence: Indices 10579831 -- 10580330 AAATTTATTTACCAAATAATAATATTTAATTTTTTTTTTCTGTCCAGTCAGATTTTAATAATAAA AATCGCGAATTTTTTAATTTCCGATTAATAAAACTTACTTTCTCGGATCCAAAAGACTAAGTGGT TTACGTGGTGTTCTCGGTACATCGTCAATGATGGAATGAGTGGAAGGAGCATAGGAAGTAACACT TTGAGCATCTTCTTCTTCGTAAACTTTTCCACGAATTCTGAAAATCAATAAGAAATAAATTCAGA AAAATTTTAAAATTTACCTTTCTATAACAGCCGAAAGTCCATGAGACGTCAAACGGCTTTTTGAT TCCGAATGCGACATCGACTTTGGTGTGTCTGTATTATTCTGAGTACTACGAGTCTGTGGAGTGAC TTGAGGAGTAATTGAAACAGAAGCAGTTGGAGTTTGTGTTCGATCTTCTTGAAGATGTAAGTATT CTCGATCAATCAACATTTTAGCCACATGACCGATTTTAACACTTC Found at i:10581771 original size:7 final size:7 Alignment explanation
Indices: 10581755--10581776 Score: 30 Period size: 7 Copynumber: 3.3 Consensus size: 7 10581745 GTTCGGGCAA 10581755 TTTTTA- 1 TTTTTAT 10581761 TTTTTAT 1 TTTTTAT * 10581768 TTTTTCT 1 TTTTTAT 10581775 TT 1 TT 10581777 CTTCTATAAT Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 6 6 0.43 7 8 0.57 ACGTcount: A:0.09, C:0.05, G:0.00, T:0.86 Consensus pattern (7 bp): TTTTTAT Left flanking sequence: Indices 10581255 -- 10581754 CATATGTGTATGTTGTCTGCAATTTTTTTTCCGATATTTAAAATATGTTTTAAAAACCAACATTG TCGAGAACCAGCATTGAAAGATCTTTGAGGTCGTCGATGAACTCGAAAAGGTGCGATATGTCATA GGTGATTTCGTTTTGAGCCGGAACCTTCTTTTTCAAATATTCTTCGTAGACTCTGCAGATTCCTA TAAGTTAAAAGTTTTTAATTGATTATAAACTTTTAATTTTAAAATGTAATTTGGTTTTTGTTACT CACCTTCAAGACATTCCGTGGTATTCTCATAATCCGACCATGAACGTGACTCGATGTTGTCTGTC GGTTGGAGCAGAAGAATTGTGTGACTCATTTTCAAAAAATTGAGAATATTTTTGAAAGGGAAAAA ACGGAGTAAATCTGCAACGTCAACGCAAAAAAAATATTAGCAAGAAGTGCGCCAGTACGTCGAAT AGTGCGTCAGCGACGTCCACTGGCGCGCTTTTGGTGTTCGGGCAA Right flanking sequence: Indices 10581777 -- 10582276 CTTCTATAATTTAACAATTTCCATACTGTTTGAGGTTTTTTGCATAAATTGTGAAAATCGAACAA TTCCTATCAAATTTTCATTTTCTCAACACAAATTCTAAAAATTATTTTCAGGTGATTTCGCCATG TCAGGCTTATCTCACGCCGGCCGCCAGGTTGCACGTATTGCAGTTCGACAAGCATCGTCTCACTC TCAGTAAGTTTTTTTTAGTGTTAAAGGCTAAATAATCTGATGTCAAGAAATCATGTTAAAAAACG ATATCAATGGAATTTTCGATATTTCAGAAAATATCTGTGTTCTTACCAGGAATTTTATTTTAAAC AATAGCTTTTTCGTATTCGTAATGCAATTAGTTTACTAAGTGATTATTCTTAACAAATATAACAA ATGCTCACTTTCTTATTTAATCTGTTCCGAAATACTAAATATTTAATCATCTATCCAAAAATATG CGTTTGCTCCCTTTAAAAGCATTAAAAAATGCATTAAATTGTTGA Found at i:10582450 original size:8 final size:8 Alignment explanation
Indices: 10582434--10582454 Score: 28 Period size: 8 Copynumber: 2.6 Consensus size: 8 10582424 TCGGAAGTGA 10582434 GGGAAAAT 1 GGGAAAAT * 10582442 GGGATAAT 1 GGGAAAAT * 10582450 GTGAA 1 GGGAA 10582455 CAACATGCCA Statistics Matches: 10, Mismatches: 3, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.43, C:0.00, G:0.38, T:0.19 Consensus pattern (8 bp): GGGAAAAT Left flanking sequence: Indices 10581934 -- 10582433 GTTGCACGTATTGCAGTTCGACAAGCATCGTCTCACTCTCAGTAAGTTTTTTTTAGTGTTAAAGG CTAAATAATCTGATGTCAAGAAATCATGTTAAAAAACGATATCAATGGAATTTTCGATATTTCAG AAAATATCTGTGTTCTTACCAGGAATTTTATTTTAAACAATAGCTTTTTCGTATTCGTAATGCAA TTAGTTTACTAAGTGATTATTCTTAACAAATATAACAAATGCTCACTTTCTTATTTAATCTGTTC CGAAATACTAAATATTTAATCATCTATCCAAAAATATGCGTTTGCTCCCTTTAAAAGCATTAAAA AATGCATTAAATTGTTGATCTCTTAAAGAACAAAATTGATTTTTCAATGCTTGTAATATCTATCC CTCGAATACAAAACAGTTTCCTAAATTGGTGAATTTTTGAATCATAAATTTTCAAATTATTGCAG TGACTCCCACGCCGTCTGGAAAGAAATCAACAGACTCGGAAGTGA Right flanking sequence: Indices 10582455 -- 10582954 CAACATGCCAAAAATGTTTTTGTTTGGTGAAGCCAAGCAGGAGACGACAGCTGCTTATCGTGCAA TTGTGAGTTTTTTAAAGAATTAATTATGTTCCCGAAAGTACAGTCGGTTCGAAAATAGTTCGAAA ATATGTTTTTGTTTTGAGAATTAATTGCAATGCTTTCAAAATAAGATAACCTTAGTACTTAGTTT ACTGAATTTTTAATTTTTTGATCATAAAGCTTCCACAGCTATAGATTTATAGTGTCGGGACTGTC CGGCGAGGCTAAAAACTTGGCTTTTGAAGCCGCCATAATGTTTTTAAAAAAATTTCAAAGTTCTT CACAAAATCATATATTTTGTTATGAAATGGCATAAGTACTACAAAAAAAATCAATTTTCTCATGC ATAAGTAATTAAAAAAATTTTAAACAAGAAAACGTTCAATTTTTAAAAAGTGACAGCATAAAATA AAACGCAATGCGATTTGTATTGTTTTATTTCAGAACAAAGACCCC Found at i:10582664 original size:7 final size:7 Alignment explanation
Indices: 10582654--10582667 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10582644 TAGTTTACTG 10582654 AATTTTT 1 AATTTTT 10582661 AATTTTT 1 AATTTTT 10582668 TGATCATAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): AATTTTT Left flanking sequence: Indices 10582154 -- 10582653 ACAAATATAACAAATGCTCACTTTCTTATTTAATCTGTTCCGAAATACTAAATATTTAATCATCT ATCCAAAAATATGCGTTTGCTCCCTTTAAAAGCATTAAAAAATGCATTAAATTGTTGATCTCTTA AAGAACAAAATTGATTTTTCAATGCTTGTAATATCTATCCCTCGAATACAAAACAGTTTCCTAAA TTGGTGAATTTTTGAATCATAAATTTTCAAATTATTGCAGTGACTCCCACGCCGTCTGGAAAGAA ATCAACAGACTCGGAAGTGAGGGAAAATGGGATAATGTGAACAACATGCCAAAAATGTTTTTGTT TGGTGAAGCCAAGCAGGAGACGACAGCTGCTTATCGTGCAATTGTGAGTTTTTTAAAGAATTAAT TATGTTCCCGAAAGTACAGTCGGTTCGAAAATAGTTCGAAAATATGTTTTTGTTTTGAGAATTAA TTGCAATGCTTTCAAAATAAGATAACCTTAGTACTTAGTTTACTG Right flanking sequence: Indices 10582668 -- 10583167 TGATCATAAAGCTTCCACAGCTATAGATTTATAGTGTCGGGACTGTCCGGCGAGGCTAAAAACTT GGCTTTTGAAGCCGCCATAATGTTTTTAAAAAAATTTCAAAGTTCTTCACAAAATCATATATTTT GTTATGAAATGGCATAAGTACTACAAAAAAAATCAATTTTCTCATGCATAAGTAATTAAAAAAAT TTTAAACAAGAAAACGTTCAATTTTTAAAAAGTGACAGCATAAAATAAAACGCAATGCGATTTGT ATTGTTTTATTTCAGAACAAAGACCCCGACTTCTTCCGTCAATCTCCATATGGTCAATATTTGAA AATTGTGTGGCGATTGGCTCTTCTTTTCGGAATCATCAAAGCCGGAACTGTTGTCTACGATTTTG CCGTTCCAGAAGAGCAGCGACTCAAGTACAAGTACCGTAATCACGGACATCACGGTCACGACGAT GCCCATGACTAAATTTCTGATTCACCACCGTCCGAACGTCTTCTT Found at i:10583941 original size:7 final size:7 Alignment explanation
Indices: 10583929--10583942 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10583919 GGTCTGAAAA 10583929 AAAAATC 1 AAAAATC 10583936 AAAAATC 1 AAAAATC 10583943 CATTTTTACG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): AAAAATC Left flanking sequence: Indices 10583429 -- 10583928 CAACCAAATCATTTCGTTATCAGCCACAGTTTATATGTGCCATAAGATTCTTCAGCACTCAACTT TTCCAGTTTCTTATTTTTTGAACTTACCAATGCTAGAAGTATAAACATAGAAATTCACATTCTTT CTAGTTAACTTCTCTGCAATGACTGGTCGTTTTTGGAAAACATGGTTTGTACTCAAACTATTCAA TTTTTTTGCCGAATTCTTCTTCGAGCCCTTGCCATAGATTATTCATTGTGTGACATCTCTATTGT ATTCTCTATTATTTAGTACTAACTTCTCTGGAATTCGACTTGCATGTCATACTATTAGAGTATAT GGCCGTGATGATAGGCTTGTGATGATATACCTTGTGAGGGCTGTGAAAAACAACAAAAAATCGAA TTTCTCCAGAAAACCAAAAAAAAAACACTCTATTTTTTTCGATTTTTCATCAATCCAACTAAAAC ATAACATCTTTGAAAAACAATTTTTCTGTTAATTTGGTCTGAAAA Right flanking sequence: Indices 10583943 -- 10584442 CATTTTTACGAAAAAACCAAAAAAGCAAAAAACCGACAGCTCTGCTATGATATACTCATCTATGA TGTGATATAGATGAATGTCTAGCGATGATTTTTTATAGAAACAATATGCCCGATTATTGAGCCTT AAAAATTCACTAAAATTTCTCAATTAATCTTTGTTTGCCGAGTTTGACATATAAGTTGCTAGAAG CTATTGATCTTTTCCATTTTCCAACAACAAATATTTGACCTTCAATACAACAACACTAATTTATT AGCACAATCACTATCAAATCTGCACGTACTTTTGTATTTATTTAATGATTTAATCAAGAGTCTTT TATCAAACTACATAGATATTCTAAGTGTCACATGAAAATCAGTTGGCAAATATATACATTTTAAA ACTATTTTATAAACCGTTTCAAGACAAGTACACTTGAAGCTATCTCTGATTACTAAAATACTATC AAGATCTATCTCTTCAGTTATTGATGTTCTTACATGTATTGCTAT Found at i:10583966 original size:8 final size:8 Alignment explanation
Indices: 10583953--10583976 Score: 41 Period size: 8 Copynumber: 3.0 Consensus size: 8 10583943 CATTTTTACG 10583953 AAAAAACC 1 AAAAAACC * 10583961 AAAAAAGC 1 AAAAAACC 10583969 AAAAAACC 1 AAAAAACC 10583977 GACAGCTCTG Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.75, C:0.21, G:0.04, T:0.00 Consensus pattern (8 bp): AAAAAACC Left flanking sequence: Indices 10583453 -- 10583952 CACAGTTTATATGTGCCATAAGATTCTTCAGCACTCAACTTTTCCAGTTTCTTATTTTTTGAACT TACCAATGCTAGAAGTATAAACATAGAAATTCACATTCTTTCTAGTTAACTTCTCTGCAATGACT GGTCGTTTTTGGAAAACATGGTTTGTACTCAAACTATTCAATTTTTTTGCCGAATTCTTCTTCGA GCCCTTGCCATAGATTATTCATTGTGTGACATCTCTATTGTATTCTCTATTATTTAGTACTAACT TCTCTGGAATTCGACTTGCATGTCATACTATTAGAGTATATGGCCGTGATGATAGGCTTGTGATG ATATACCTTGTGAGGGCTGTGAAAAACAACAAAAAATCGAATTTCTCCAGAAAACCAAAAAAAAA ACACTCTATTTTTTTCGATTTTTCATCAATCCAACTAAAACATAACATCTTTGAAAAACAATTTT TCTGTTAATTTGGTCTGAAAAAAAAATCAAAAATCCATTTTTACG Right flanking sequence: Indices 10583977 -- 10584476 GACAGCTCTGCTATGATATACTCATCTATGATGTGATATAGATGAATGTCTAGCGATGATTTTTT ATAGAAACAATATGCCCGATTATTGAGCCTTAAAAATTCACTAAAATTTCTCAATTAATCTTTGT TTGCCGAGTTTGACATATAAGTTGCTAGAAGCTATTGATCTTTTCCATTTTCCAACAACAAATAT TTGACCTTCAATACAACAACACTAATTTATTAGCACAATCACTATCAAATCTGCACGTACTTTTG TATTTATTTAATGATTTAATCAAGAGTCTTTTATCAAACTACATAGATATTCTAAGTGTCACATG AAAATCAGTTGGCAAATATATACATTTTAAAACTATTTTATAAACCGTTTCAAGACAAGTACACT TGAAGCTATCTCTGATTACTAAAATACTATCAAGATCTATCTCTTCAGTTATTGATGTTCTTACA TGTATTGCTATTGACATAAAATTCTACGTATTTACAGAACAAATG Found at i:10583973 original size:9 final size:9 Alignment explanation
Indices: 10583953--10583974 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 10583943 CATTTTTACG * 10583953 AAAAAACCA 1 AAAAAACAA * 10583962 AAAAAGCAA 1 AAAAAACAA 10583971 AAAA 1 AAAA 10583975 CCGACAGCTC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.82, C:0.14, G:0.05, T:0.00 Consensus pattern (9 bp): AAAAAACAA Left flanking sequence: Indices 10583453 -- 10583952 CACAGTTTATATGTGCCATAAGATTCTTCAGCACTCAACTTTTCCAGTTTCTTATTTTTTGAACT TACCAATGCTAGAAGTATAAACATAGAAATTCACATTCTTTCTAGTTAACTTCTCTGCAATGACT GGTCGTTTTTGGAAAACATGGTTTGTACTCAAACTATTCAATTTTTTTGCCGAATTCTTCTTCGA GCCCTTGCCATAGATTATTCATTGTGTGACATCTCTATTGTATTCTCTATTATTTAGTACTAACT TCTCTGGAATTCGACTTGCATGTCATACTATTAGAGTATATGGCCGTGATGATAGGCTTGTGATG ATATACCTTGTGAGGGCTGTGAAAAACAACAAAAAATCGAATTTCTCCAGAAAACCAAAAAAAAA ACACTCTATTTTTTTCGATTTTTCATCAATCCAACTAAAACATAACATCTTTGAAAAACAATTTT TCTGTTAATTTGGTCTGAAAAAAAAATCAAAAATCCATTTTTACG Right flanking sequence: Indices 10583975 -- 10584474 CCGACAGCTCTGCTATGATATACTCATCTATGATGTGATATAGATGAATGTCTAGCGATGATTTT TTATAGAAACAATATGCCCGATTATTGAGCCTTAAAAATTCACTAAAATTTCTCAATTAATCTTT GTTTGCCGAGTTTGACATATAAGTTGCTAGAAGCTATTGATCTTTTCCATTTTCCAACAACAAAT ATTTGACCTTCAATACAACAACACTAATTTATTAGCACAATCACTATCAAATCTGCACGTACTTT TGTATTTATTTAATGATTTAATCAAGAGTCTTTTATCAAACTACATAGATATTCTAAGTGTCACA TGAAAATCAGTTGGCAAATATATACATTTTAAAACTATTTTATAAACCGTTTCAAGACAAGTACA CTTGAAGCTATCTCTGATTACTAAAATACTATCAAGATCTATCTCTTCAGTTATTGATGTTCTTA CATGTATTGCTATTGACATAAAATTCTACGTATTTACAGAACAAA Found at i:10584157 original size:7 final size:7 Alignment explanation
Indices: 10584147--10584160 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10584137 GCTATTGATC 10584147 TTTTCCA 1 TTTTCCA 10584154 TTTTCCA 1 TTTTCCA 10584161 ACAACAAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57 Consensus pattern (7 bp): TTTTCCA Left flanking sequence: Indices 10583647 -- 10584146 AGCCCTTGCCATAGATTATTCATTGTGTGACATCTCTATTGTATTCTCTATTATTTAGTACTAAC TTCTCTGGAATTCGACTTGCATGTCATACTATTAGAGTATATGGCCGTGATGATAGGCTTGTGAT GATATACCTTGTGAGGGCTGTGAAAAACAACAAAAAATCGAATTTCTCCAGAAAACCAAAAAAAA AACACTCTATTTTTTTCGATTTTTCATCAATCCAACTAAAACATAACATCTTTGAAAAACAATTT TTCTGTTAATTTGGTCTGAAAAAAAAATCAAAAATCCATTTTTACGAAAAAACCAAAAAAGCAAA AAACCGACAGCTCTGCTATGATATACTCATCTATGATGTGATATAGATGAATGTCTAGCGATGAT TTTTTATAGAAACAATATGCCCGATTATTGAGCCTTAAAAATTCACTAAAATTTCTCAATTAATC TTTGTTTGCCGAGTTTGACATATAAGTTGCTAGAAGCTATTGATC Right flanking sequence: Indices 10584161 -- 10584660 ACAACAAATATTTGACCTTCAATACAACAACACTAATTTATTAGCACAATCACTATCAAATCTGC ACGTACTTTTGTATTTATTTAATGATTTAATCAAGAGTCTTTTATCAAACTACATAGATATTCTA AGTGTCACATGAAAATCAGTTGGCAAATATATACATTTTAAAACTATTTTATAAACCGTTTCAAG ACAAGTACACTTGAAGCTATCTCTGATTACTAAAATACTATCAAGATCTATCTCTTCAGTTATTG ATGTTCTTACATGTATTGCTATTGACATAAAATTCTACGTATTTACAGAACAAATGTTGATATTC CTGTTTTTGCTGTTTCTTTCAGCTCCACTATGCAAGTTTGTATTGTATCCAGTGATATACGCGTT CCTTAAATGGAGACATCCGGTCAAGTGAGTACTAATGTGATTATGGACCCAGTATGGGGCAATTG ATCACTTTTTTGTTTACGACCCAAACTGGTTATCTATATTGAAAT Found at i:10585075 original size:9 final size:9 Alignment explanation
Indices: 10585061--10585078 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10585051 GAATTACCGA 10585061 GATTTTTTT 1 GATTTTTTT 10585070 GATTTTTTT 1 GATTTTTTT 10585079 TAAACTAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78 Consensus pattern (9 bp): GATTTTTTT Left flanking sequence: Indices 10584561 -- 10585060 AGACATCCGGTCAAGTGAGTACTAATGTGATTATGGACCCAGTATGGGGCAATTGATCACTTTTT TGTTTACGACCCAAACTGGTTATCTATATTGAAATTCGAGTTTTTTGTCAATTGTGATTTGATAC TATCAGTTGATTAACAAGTGAGCACACTTTTTTTTTTGAATGAATAGCAGAAACCATACTTTGAT AAATTGACAAAAAGTTGAAACTTCTATCTAGATTTCTATGGAAAATATGAACGATGACTATCCGA TTCGTTCACTCTTATAGTATTTAAAGAAAAGACATGTGCTTGAATAGATAAAAGATTGATTTAAA AAATTACTCAAACGTTTTTGCAATACTTTAAATACCACTCATTTTTTTTCGCTGATCGAAATTTG GAAATCGTACTTTTAAAACATTTTCAAAATAAAATCTTTAACTGTTCCCTTCTTGCATATTGATG GTATTCATGCATATTGTCTTTTTATAAGTTCTAGTGAATTACCGA Right flanking sequence: Indices 10585079 -- 10585578 TAAACTAAAAAAGGCTACAGTAGACTCAATACAATTTCAGAAAGTTCACTGCTCCAACTGCAAAG ATTCGTGACATTATAAACCCTGATAAAGAGGAATGGGAACTGGAACATATTAAAAATGAAGTATG AATAATAAAAATAGACACGAAATTCGTCCTTTTTTTGCAGGAAATTCTAACAATTAGCGGTTCTG GAGAAGATAATAGTTTTGTGTATATTCAAGTTATAACAAAGAATGAAATTCATTTTGCTCATATT CGAGTTTTCGAAAAAGGAATTCTTTATTCCGGATCATACAAAGCAGTATTCTCCGATAATCGAAC AATTTCATGTGGACCATTGCTAATTGAGCTTCGAAACCCATTCCGTAAATGGAGAATTAATTTCC GTGGATACCTGAATGATGCTAAAGGCAACTCTCATTTTGTTATACTTTCGGGATGGTGGAAATGT GTGTCGAATGCTAGATTTTTCTATTCAAATGCTCTTTTGAAGTCA Found at i:10586811 original size:9 final size:9 Alignment explanation
Indices: 10586788--10586811 Score: 34 Period size: 9 Copynumber: 2.7 Consensus size: 9 10586778 AAGATCATCT * 10586788 GCAGTTGGA 1 GCAGATGGA * 10586797 GAAGATGGA 1 GCAGATGGA 10586806 GCAGAT 1 GCAGAT 10586812 CTTTCATCAG Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.33, C:0.08, G:0.42, T:0.17 Consensus pattern (9 bp): GCAGATGGA Left flanking sequence: Indices 10586288 -- 10586787 ATGAAGTTACAACTAAACTTCCCGATAGTTTCCCGGAATATCATGCAACTGAATCAGAAAAGATG AAATCAGTAGTCTCATTCAATCACAGAGCATGTCAGGATAAAATGTTAACTGGCGGAAAAGGTGC GAATTTAGCAAGACTTCAAGCAATCACCGATGATGTAAGTTCTGAAAGTAAGCATATACAATGTT GAAATAGATTTTCAGTTCCATGTGCCTCCTGGAATAGTTGTCACTACCGCAGCTTTCAACAAGCA TGTAATTGCGAATCCAAATGTTTTAGAAGAAATAAAACTTCTCGATATCAACGATAAAAATGCCG AGTATTATGAGGATGTTGGTAAAAGGTAATAAAATAAGTTATCAATCCAATATTTAGAAACATGA CATATTTTAGAATTGAAGGGCTTCTTTTCGAAAGTGAAGTGTCTCAAGAACTGCAAAAAGAAATT AAGGAGTGGTTACCGCGTTCTGAATACTATGCAGTAAGATCATCT Right flanking sequence: Indices 10586812 -- 10587311 CTTTCATCAGCTGGACAACTGGAAAGTTACTTGGATGTGATTGAAATTGATATAGTTGATAAACT GAAGCTGTGTTGGGGCTCTAATTTTAGAAGAGAAGTATTGAATTACAGAAAGTAGGTTTTAACAA GTTAAAATTTCAATCACAATGTGACGTTTACAGAAACTACGGTCAGCAGCTTAATCCGTCAATGG CTGTAGTTATTCAAGAAATGGATCGAAACGGAGTGGCTGGAGTTATGTTCACCGCAAATCCAGTA AAATTAGATCGTGGAGAAATTGTGATAAATGCATTGAAAGGAAGTGGGGAACAAATTGTGAGCGG TGTGACGACACCAGATGAGATTTACGTAAATCGAATCCATAAAACGGTGGTCATAAATGTAAGTT GGGTTTTCTTAAAAGGATTTTTGCTATATTTTACCTTTTTGTCAATAAAGAAGTACTACAAAAAT ATTTTCAGAAAGTTGGCGTCGATTGTTGCTTGGATGACTATCAGA Found at i:10589735 original size:8 final size:8 Alignment explanation
Indices: 10589722--10589738 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10589712 TTCACATTGG 10589722 TCAGTAAA 1 TCAGTAAA 10589730 TCAGTAAA 1 TCAGTAAA 10589738 T 1 T 10589739 AAAAAATATG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29 Consensus pattern (8 bp): TCAGTAAA Left flanking sequence: Indices 10589222 -- 10589721 TTTCTCATGGATACATGAATCCAATTAAAATAGAAATCGCTGAAACTGATGCAAATATTGGTATC ATTCTTCGAGGAACTACAGTATGCGAAGGAAAAGTTAGAGCCAGAGCAAGAGTTGCCAAAACATT GGAAGAAGCAAAAGAGACAAAACCAGGAGAGATTCTCATTACAAAATACACGGATATCTGTTGGT CTCCATTTTTCCCAATTATCAGTGGAATTGTCACCGAGATTGGAGGACTACTCAGTCATGGGGCT GTTGTTGCAAGAGAGTATGGACTACCAAGTTTGATTGCAGTTTCCAATGCAACATATCACTTTAA AACTGGTGATCTTGTTGAACTGGACTCTATTTCTGGCACAATTAGCCGACTGGACACTAATCAGG AATAAATTTATGTAATCAATTTTTTTCAAATAAAACTGTTTTATGTGAGTGTTTATTCAAAATTT GATATTCTAGAACACAAATAAAAAAGATGCGTATGTTCACATTGG Right flanking sequence: Indices 10589739 -- 10590238 AAAAAATATGTTAGTACACGGAACTTGTTACCATGACAGCTCTACTCCTGAGACTGGGAAAATGG TCTGTTGCCATTGACGTACGTACCTAGAAAAATAAGACATGTTTCACAGAATTATATATCATTTA CCTTGGTACTAAAATACATAATAGTCCATGGATGATTGAAAGTGAGTATGTCACTAACAAAAGGC ATCAATGCTTTTGCAGTTTGGGCTCCGACTGACATTCCTTCTGATGGTGCGGCGCGAAGAATCAA CTAAAAGTATTGAAATATTGAATAACTGAGGAGGCAAAACCTAAATACCGTATCTCCGAGAGCTA ATAGCTGAATAATGAACGAAACAAAGCTGACAGTAAACAGATTTCTCTCTGCACCACTGATCCTT GTTGGAAGAAGAGTCAGACGAATTATTGAGACAATGTTTGCAGTTGCGGTAAATAATGTAAAAAC TATCATGAATGTGACTAGCGAGTTTAGCACTTCTGTTGAGTTCTG Found at i:10593188 original size:10 final size:9 Alignment explanation
Indices: 10593175--10593196 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 10593165 AAAAAGATCT 10593175 CAAAAATTGA 1 CAAAAA-TGA * 10593185 CAAATATGA 1 CAAAAATGA 10593194 CAA 1 CAA 10593197 TGAACCTGAA Statistics Matches: 11, Mismatches: 1, Indels: 1 0.85 0.08 0.08 Matches are distributed among these distances: 9 6 0.55 10 5 0.45 ACGTcount: A:0.59, C:0.14, G:0.09, T:0.18 Consensus pattern (9 bp): CAAAAATGA Left flanking sequence: Indices 10592675 -- 10593174 ATTGAGTCAGACATTGAGAATGATAGTGCTATATTACTTAGTAAAGGTAAAGTCTGAGGGACAAA AACCTATTTTTCAATTCGATATTGCAAATGTAATGAATTGTATATTAATTGTTCGAACATCAAAC GAAAACACGAGGTAACCCAAATTATTTTAGAGCCATGAATGTCGTTGTCATATGATGTTTTTGGA GGTGTCTGGTTTTACAATTAAAAATAATGACGAAATGCAAAATACGTATCGATAGAGAGAAGTTA GTTTTTGATAAGAGTAGTCATAAATTATGACGTTTAAAGGGACAAGAGAGAATTAAAACGTGTTT GGGAAAGTTTATGTCTATGTATATGAAGGTTAATTTTCCAATTTCTAGGTATATTTGTCTTTTAT CACAGGCCACATAGTACGTGATAATTTGAATGTACGATGATGAGTGTGATATGTACACAAAAAAT ATAAGACTGATTTACTTTATTAGATGAATCATGAAAAAAAGATCT Right flanking sequence: Indices 10593197 -- 10593696 TGAACCTGAAGTGAAATTGAGTAGGAATTTAATGATAATAAGCAAGAAAAAGGACGCAGATTGAA TCTCAATTAATATCAGAATCTCAATTAAAATTGAATCTCAATTAATATCAAGCAATAAAATTATT CTAAGAACCATGTTTTTCGATACAAAAATTTGGGTGTTCCAAATTCAAAAAAGTCTGAGATCAAA TAAGTGCCTTTTCCTTATTACTAAACAAGTTAGTTAGAATGAATTTTTCTCTCGTCATGTCGAAA CCGTTTCACAATTCGAACTCCGTTGACAGCATTACGTCGACGATATCCTTCTCCCGTATTTTCAG CTGCATCAACAAGAATTTGATTGTCTTGAACTGTTCGCTTGAATTCTGCCGACTGTGGTTTCTTT GTTGATGGTAATTCAGAAGTTTCTGAGTGCCCATCATCTTCATATTCAACAGTCTCGTCTTCGTA AACCACTGAAAGGTTTTATGAAATATCGCAATTCGTTTGTAACGT Found at