TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:18708867 original size:10 final size:10 Alignment explanation
Indices: 18708848--18708878 Score: 55 Period size: 10 Copynumber: 3.1 Consensus size: 10 18708838 GTCAAGTTGT * 18708848 CAGCCACAGG 1 CAGGCACAGG 18708858 CAGGCACAGG 1 CAGGCACAGG 18708868 CAGGCACAGG 1 CAGGCACAGG 18708878 C 1 C 18708879 CAGTTTTTTC Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 10 20 1.00 ACGTcount: A:0.29, C:0.35, G:0.35, T:0.00 Consensus pattern (10 bp): CAGGCACAGG Left flanking sequence: Indices 18708348 -- 18708847 GATTGAATCTGGTTGATTGAATGGGAATGAGAATGGCAGGAATTGAAGCATGCGCCCTTTCCTTG GCTTGTAATGCTCTTCTACCCATTCTCCTGAAAATTTTTGAAAATGTTGCTGTTTTTGTCAGGTG GGTGCCGAAAAATATTAGAAATACCGAAAATCCGTAGATTCTGGTGTCAGGTACGCAATCACCAG GCTACAGTAACCCAAAACACTAGATTTGACGACATTTCCTGCAAAACCGCAAAATCAAAATTTTT CAGCCAATTCCCTTCAAAATCACCTGGATCTTGCTTCCCACCGCGACCACTGTTTCAAGTTGCTC ACGGAGCACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGGTCAATTAGGTGTAC CATCATGTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTGGAAAATTTTGACCACG ATGCGAAAGCTGTACTTGTTGAATAAAGTTGTAAAGTCAAGTTGT Right flanking sequence: Indices 18708879 -- 18709378 CAGTTTTTTCTTCAAAAACTGAAATTTTCTGTATTTTCTTCAATTTTTCGTTGGAAAATTGGAAT TAAGAGAGTTTTTTTTTTGATATTCTATTTGAATTTCACACATTTTTTCTCAGAGAATATATTAG AAGTTAAAGTATTCAGTTCAAAAGTTATGTCAAAACCCATCCAAAAAGTTATAATAAATCAGAAA TGGCACTCTCTGGGCTCCTTGACAGCTGCGCAGGTCTGATGGGTACCCGTCTCCCAACACATTTG CCGCCATGTCCCTTCATTCAGTATTGAATGTCGCCTTGTGTATGGTGACTTTCTTCTATTTTCTC TGGTTTTTTCGACATTTTTTGGGCGGTCTTCCTATTGATTTTTTGAAAAATTGTAAGTTTTAGAT TTAAAGATTCAATATTTAAAGGAGAAGTGGATTTTTTTTTCATAGCTCGTTGTCTGTAACCTCAG TGTGTGGATATGGCCGGGGTACTGTAGTAGTACTGTAGGGGTACT Found at i:18709592 original size:10 final size:10 Alignment explanation
Indices: 18709577--18709641 Score: 65 Period size: 10 Copynumber: 6.5 Consensus size: 10 18709567 AAAGTATTAT 18709577 TGGAAAATTC 1 TGGAAAATTC 18709587 TGGAAAATTC 1 TGGAAAATTC ** 18709597 TGGAATGTTC 1 TGGAAAATTC ** ** 18709607 CAGAACCTTC 1 TGGAAAATTC 18709617 TGGAAAATT- 1 TGGAAAATTC * 18709626 TGAAAAAATTC 1 TG-GAAAATTC 18709637 TGGAA 1 TGGAA 18709642 TGTAGTGAGA Statistics Matches: 41, Mismatches: 12, Indels: 4 0.72 0.21 0.07 Matches are distributed among these distances: 9 2 0.05 10 37 0.90 11 2 0.05 ACGTcount: A:0.38, C:0.12, G:0.20, T:0.29 Consensus pattern (10 bp): TGGAAAATTC Left flanking sequence: Indices 18709077 -- 18709576 CACTCTCTGGGCTCCTTGACAGCTGCGCAGGTCTGATGGGTACCCGTCTCCCAACACATTTGCCG CCATGTCCCTTCATTCAGTATTGAATGTCGCCTTGTGTATGGTGACTTTCTTCTATTTTCTCTGG TTTTTTCGACATTTTTTGGGCGGTCTTCCTATTGATTTTTTGAAAAATTGTAAGTTTTAGATTTA AAGATTCAATATTTAAAGGAGAAGTGGATTTTTTTTTCATAGCTCGTTGTCTGTAACCTCAGTGT GTGGATATGGCCGGGGTACTGTAGTAGTACTGTAGGGGTACTTTAGGAGTACTGTAGTGGTACTG TAGGATTACTGTAGTTTAGGAAAAATTGACTTTCCGCTTTTTGAAGGGATTATGGGTTGCGGTTA GTGAGGGGATATGATCGGGGTACTGTAGTAGTACTGTAGGGGTACTGTAGTGGTACTGTAGGATT ACTGTAGTTTAGGAAAAATTGACTTTTCGTCTTTTAAAGTATTAT Right flanking sequence: Indices 18709642 -- 18710141 TGTAGTGAGATTGGTGAGATCCATCGTGGTGAGACCCATTGTGGTGCGACCCATGAATTTTGGCG GGAAATTTAAATTTTCTGTGAAAAGTTTTCTGGCGGGAAATTCTAATTTATTGAGAAACAAATTT GGCGGGGAATTCAAATGCTCTCAGAAACAACTTCCTAGAAAAATCTGGAATTTTCTAAAACAAAA TCTAGGAACATCTAGAAAATTAGGAAGCTTTTAAAATTTTCTAGAAAAATGCCCTAGGATTTTCC ACTTGGCCTCTCACACATGGGGGGAGGGGGTCTATACATTTTACCCGTATTAGTTTAGACTATTT TAAATTCACAAATATTTAACATTTTTCTTAAAAAATTTAATCGATTTTCTTTATGTCCCTGTAGG CACTGATATAATCATTTTATAATTCAAAAAAAAACTGGTTCTAGCTATTATAATCGAAATTGGTT TGTGCAATATCTAAGAAACCAGCCGTGGACCGCACCTCCGGCGCG Found at i:18709851 original size:10 final size:10 Alignment explanation
Indices: 18709833--18709862 Score: 39 Period size: 9 Copynumber: 3.2 Consensus size: 10 18709823 TTTCTAAAAC 18709833 AAAATCTAGG 1 AAAATCTAGG * 18709843 AACATCTA-G 1 AAAATCTAGG 18709852 AAAAT-TAGG 1 AAAATCTAGG 18709861 AA 1 AA 18709863 GCTTTTAAAA Statistics Matches: 17, Mismatches: 2, Indels: 3 0.77 0.09 0.14 Matches are distributed among these distances: 8 2 0.12 9 8 0.47 10 7 0.41 ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20 Consensus pattern (10 bp): AAAATCTAGG Left flanking sequence: Indices 18709333 -- 18709832 GTGTGTGGATATGGCCGGGGTACTGTAGTAGTACTGTAGGGGTACTTTAGGAGTACTGTAGTGGT ACTGTAGGATTACTGTAGTTTAGGAAAAATTGACTTTCCGCTTTTTGAAGGGATTATGGGTTGCG GTTAGTGAGGGGATATGATCGGGGTACTGTAGTAGTACTGTAGGGGTACTGTAGTGGTACTGTAG GATTACTGTAGTTTAGGAAAAATTGACTTTTCGTCTTTTAAAGTATTATTGGAAAATTCTGGAAA ATTCTGGAATGTTCCAGAACCTTCTGGAAAATTTGAAAAAATTCTGGAATGTAGTGAGATTGGTG AGATCCATCGTGGTGAGACCCATTGTGGTGCGACCCATGAATTTTGGCGGGAAATTTAAATTTTC TGTGAAAAGTTTTCTGGCGGGAAATTCTAATTTATTGAGAAACAAATTTGGCGGGGAATTCAAAT GCTCTCAGAAACAACTTCCTAGAAAAATCTGGAATTTTCTAAAAC Right flanking sequence: Indices 18709863 -- 18710362 GCTTTTAAAATTTTCTAGAAAAATGCCCTAGGATTTTCCACTTGGCCTCTCACACATGGGGGGAG GGGGTCTATACATTTTACCCGTATTAGTTTAGACTATTTTAAATTCACAAATATTTAACATTTTT CTTAAAAAATTTAATCGATTTTCTTTATGTCCCTGTAGGCACTGATATAATCATTTTATAATTCA AAAAAAAACTGGTTCTAGCTATTATAATCGAAATTGGTTTGTGCAATATCTAAGAAACCAGCCGT GGACCGCACCTCCGGCGCGGCCCCCGACTTCTGGAGCTTAAAACTAATTTTTCTGAAACTACCGT AATCATACAGTACACCTACCGTACCACTATTGTACCACTAAAGTACCCCGACTATATCCCTACAC TAACCCCAACTCACTATCCCTCCAGAAGCCAAAACTATACAGACTACAAAGACTACATAGAATAC AAACTATGGACAAACGGAATAAGCGCTTTATATATAGTAAATGAT Found at i:18710305 original size:9 final size:9 Alignment explanation
Indices: 18710282--18710320 Score: 43 Period size: 9 Copynumber: 4.4 Consensus size: 9 18710272 CTCCAGAAGC 18710282 CAAA-ACTA 1 CAAAGACTA * * 18710290 TACAGACTA 1 CAAAGACTA 18710299 CAAAGACTA 1 CAAAGACTA * * 18710308 CATAGAATA 1 CAAAGACTA 18710317 CAAA 1 CAAA 18710321 CTATGGACAA Statistics Matches: 23, Mismatches: 7, Indels: 1 0.74 0.23 0.03 Matches are distributed among these distances: 8 2 0.09 9 21 0.91 ACGTcount: A:0.56, C:0.21, G:0.08, T:0.15 Consensus pattern (9 bp): CAAAGACTA Left flanking sequence: Indices 18709782 -- 18710281 TCAAATGCTCTCAGAAACAACTTCCTAGAAAAATCTGGAATTTTCTAAAACAAAATCTAGGAACA TCTAGAAAATTAGGAAGCTTTTAAAATTTTCTAGAAAAATGCCCTAGGATTTTCCACTTGGCCTC TCACACATGGGGGGAGGGGGTCTATACATTTTACCCGTATTAGTTTAGACTATTTTAAATTCACA AATATTTAACATTTTTCTTAAAAAATTTAATCGATTTTCTTTATGTCCCTGTAGGCACTGATATA ATCATTTTATAATTCAAAAAAAAACTGGTTCTAGCTATTATAATCGAAATTGGTTTGTGCAATAT CTAAGAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCCGACTTCTGGAGCTTAAAACTAATT TTTCTGAAACTACCGTAATCATACAGTACACCTACCGTACCACTATTGTACCACTAAAGTACCCC GACTATATCCCTACACTAACCCCAACTCACTATCCCTCCAGAAGC Right flanking sequence: Indices 18710321 -- 18710820 CTATGGACAAACGGAATAAGCGCTTTATATATAGTAAATGATAATTACAGAAACTACGGTCAATA TGTGTGCAGTGTCCCGCATGCCGACGATTTCCGGTCACATACAAACAAAACATAGACGGGCTTTA AAGCTGTGAGTAACAAGAAAATTGCTTTAAAAAATATTGTTACAAAATTAATTTTTTCAGGTCTT TTGGACAGTATCAAAACCTCTATAATACTTCACGTCTCTATTATGTTGGATGCATTTATCCGTTG GAACATGGACCGTGCGAGAGCAGATATTAAGAAAATAACATATTGGCTTAGGTGAGTTGCTCTGT TTTTTTAATCTAAAAATTTTCCTCCTTAAATCTAATGCTTTTCAGGCTGGATACACTGGTAGGAG AACCCATAGGAAAGTTGCAAATCAACCATAAGCAGACACTCAACTGGCTACTGGCGGTGCAGCGC TTCTACCCTTCTCAAGGGCTACATGAGGTGTGTGATATCAATATA Found at i:18711960 original size:10 final size:10 Alignment explanation
Indices: 18711945--18712045 Score: 167 Period size: 10 Copynumber: 10.1 Consensus size: 10 18711935 GTCAAGATGT 18711945 CAGGCACAGG 1 CAGGCACAGG ** 18711955 CAGGCAAGGG 1 CAGGCACAGG 18711965 CAGGCACAGG 1 CAGGCACAGG * 18711975 TAGGCACAGG 1 CAGGCACAGG * 18711985 CAGGCACATG 1 CAGGCACAGG 18711995 CAGGCACAGG 1 CAGGCACAGG 18712005 CAGGCACAGG 1 CAGGCACAGG * 18712015 CAGGCACGGG 1 CAGGCACAGG 18712025 CAGGCACAGG 1 CAGGCACAGG 18712035 CAGGCACAGG 1 CAGGCACAGG 18712045 C 1 C 18712046 TTTTCATCAT Statistics Matches: 81, Mismatches: 10, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 10 81 1.00 ACGTcount: A:0.29, C:0.29, G:0.41, T:0.02 Consensus pattern (10 bp): CAGGCACAGG Left flanking sequence: Indices 18711445 -- 18711944 CAAACCGCTTAAATATATTTAAAACTAATGCACCTACCCACAAACTCTAAATATGTCGTTTTTTT AATCCTTTTAGCATGTTTTGTGGGATTCTGAATTTACATGTACAGATGCCATATTAATACATGGG TCCTCACCTAATGCCCATACGTGTAAGTATGCATAGTAACTGTGATAATGTACACTTTTGATTCA TTTTAAAATATTTTTAAAATAGTTTTTATAAGCTTCGAAAATATTAAAATTTTGGGAAACCATTC AAAATTTTCAGCGAATTACCTTCAAAATCACATGGATCTTGCTCCTCACCGCGACCACTGTTTCA AGTTGCTCACGGAGCACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGCTCAATT AGGTGTGCCATCAAGTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTCGAAAATTT TGATGACGATGTTAAAGTTGTACTTGTTGAATAAAGTCAAGATGT Right flanking sequence: Indices 18712046 -- 18712545 TTTTCATCATTTTTTAAAGATTGTTTCTACATTTAAAATTTAAAAAAATCAGCGATAAAACCTTT AAAAATGAGAAATTTAAAAATCCCTCAAAAATTTAAATATATTTTTTAAAATTTTAAAATTTTTA AAATTTTTTAATTTAATTTAATAATTAATTTTCACACATTTTTTCTCAGAGACTATATTAGTAGT TAAACTATTCAGTTCAAAAGTTACGTCAGAACCCAACCAAAAATTATAATAAATCAGAAATGGCA CCGGCTGGGCGTCTGCCTTGACATCTGCGCCGGTCTGGTGGAAACCCTCTCCCAACACATTTGCC GCCATTTCCTTTTATTCTGTCTTCAATGTCGCGTTGTGTATGGTGACTTTCTTCTATTTTTTCTG ATTATTTTAACATTTTATGGACAATCTTCGTATCGATTTTTTGAGAAATGGTAAGTTTTAGATTT AAAGTTTCAATATATTAAGAAGAAGTGGCCTTTTGCACTGAGTTC Found at i:18712088 original size:7 final size:7 Alignment explanation
Indices: 18712076--18712090 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 18712066 TTGTTTCTAC 18712076 ATTTAAA 1 ATTTAAA 18712083 ATTTAAA 1 ATTTAAA 18712090 A 1 A 18712091 AAATCAGCGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (7 bp): ATTTAAA Left flanking sequence: Indices 18711576 -- 18712075 CCTCACCTAATGCCCATACGTGTAAGTATGCATAGTAACTGTGATAATGTACACTTTTGATTCAT TTTAAAATATTTTTAAAATAGTTTTTATAAGCTTCGAAAATATTAAAATTTTGGGAAACCATTCA AAATTTTCAGCGAATTACCTTCAAAATCACATGGATCTTGCTCCTCACCGCGACCACTGTTTCAA GTTGCTCACGGAGCACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGCTCAATTA GGTGTGCCATCAAGTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTCGAAAATTTT GATGACGATGTTAAAGTTGTACTTGTTGAATAAAGTCAAGATGTCAGGCACAGGCAGGCAAGGGC AGGCACAGGTAGGCACAGGCAGGCACATGCAGGCACAGGCAGGCACAGGCAGGCACGGGCAGGCA CAGGCAGGCACAGGCTTTTCATCATTTTTTAAAGATTGTTTCTAC Right flanking sequence: Indices 18712091 -- 18712590 AAATCAGCGATAAAACCTTTAAAAATGAGAAATTTAAAAATCCCTCAAAAATTTAAATATATTTT TTAAAATTTTAAAATTTTTAAAATTTTTTAATTTAATTTAATAATTAATTTTCACACATTTTTTC TCAGAGACTATATTAGTAGTTAAACTATTCAGTTCAAAAGTTACGTCAGAACCCAACCAAAAATT ATAATAAATCAGAAATGGCACCGGCTGGGCGTCTGCCTTGACATCTGCGCCGGTCTGGTGGAAAC CCTCTCCCAACACATTTGCCGCCATTTCCTTTTATTCTGTCTTCAATGTCGCGTTGTGTATGGTG ACTTTCTTCTATTTTTTCTGATTATTTTAACATTTTATGGACAATCTTCGTATCGATTTTTTGAG AAATGGTAAGTTTTAGATTTAAAGTTTCAATATATTAAGAAGAAGTGGCCTTTTGCACTGAGTTC TAGAAGTGTTAAAAATACCATTTTTAGGAATTTTTACCGCAGACA Found at i:18712167 original size:8 final size:8 Alignment explanation
Indices: 18712154--18712182 Score: 49 Period size: 8 Copynumber: 3.5 Consensus size: 8 18712144 TAAATATATT 18712154 TTTTAAAA 1 TTTTAAAA 18712162 TTTTAAAA 1 TTTTAAAA 18712170 TTTTTAAAA 1 -TTTTAAAA 18712179 TTTT 1 TTTT 18712183 TTAATTTAAT Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 8 12 0.60 9 8 0.40 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (8 bp): TTTTAAAA Left flanking sequence: Indices 18711654 -- 18712153 TAAAATAGTTTTTATAAGCTTCGAAAATATTAAAATTTTGGGAAACCATTCAAAATTTTCAGCGA ATTACCTTCAAAATCACATGGATCTTGCTCCTCACCGCGACCACTGTTTCAAGTTGCTCACGGAG CACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGCTCAATTAGGTGTGCCATCAA GTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTCGAAAATTTTGATGACGATGTTA AAGTTGTACTTGTTGAATAAAGTCAAGATGTCAGGCACAGGCAGGCAAGGGCAGGCACAGGTAGG CACAGGCAGGCACATGCAGGCACAGGCAGGCACAGGCAGGCACGGGCAGGCACAGGCAGGCACAG GCTTTTCATCATTTTTTAAAGATTGTTTCTACATTTAAAATTTAAAAAAATCAGCGATAAAACCT TTAAAAATGAGAAATTTAAAAATCCCTCAAAAATTTAAATATATT Right flanking sequence: Indices 18712183 -- 18712682 TTAATTTAATTTAATAATTAATTTTCACACATTTTTTCTCAGAGACTATATTAGTAGTTAAACTA TTCAGTTCAAAAGTTACGTCAGAACCCAACCAAAAATTATAATAAATCAGAAATGGCACCGGCTG GGCGTCTGCCTTGACATCTGCGCCGGTCTGGTGGAAACCCTCTCCCAACACATTTGCCGCCATTT CCTTTTATTCTGTCTTCAATGTCGCGTTGTGTATGGTGACTTTCTTCTATTTTTTCTGATTATTT TAACATTTTATGGACAATCTTCGTATCGATTTTTTGAGAAATGGTAAGTTTTAGATTTAAAGTTT CAATATATTAAGAAGAAGTGGCCTTTTGCACTGAGTTCTAGAAGTGTTAAAAATACCATTTTTAG GAATTTTTACCGCAGACAGTCGATGAGTAGCGTGCAATTTGAGAGATTTAGTGAAAAGATGAGAG AGTGAGAGACTTGGTTATAGCGTGCGTTTTTGAGAGATTTAGAGA Found at i:18712174 original size:9 final size:9 Alignment explanation
Indices: 18712153--18712183 Score: 55 Period size: 9 Copynumber: 3.6 Consensus size: 9 18712143 TTAAATATAT 18712153 TTTTTAAAA 1 TTTTTAAAA 18712162 -TTTTAAAA 1 TTTTTAAAA 18712170 TTTTTAAAA 1 TTTTTAAAA 18712179 TTTTT 1 TTTTT 18712184 TAATTTAATT Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 8 8 0.38 9 13 0.62 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (9 bp): TTTTTAAAA Left flanking sequence: Indices 18711653 -- 18712152 TTAAAATAGTTTTTATAAGCTTCGAAAATATTAAAATTTTGGGAAACCATTCAAAATTTTCAGCG AATTACCTTCAAAATCACATGGATCTTGCTCCTCACCGCGACCACTGTTTCAAGTTGCTCACGGA GCACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGCTCAATTAGGTGTGCCATCA AGTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTCGAAAATTTTGATGACGATGTT AAAGTTGTACTTGTTGAATAAAGTCAAGATGTCAGGCACAGGCAGGCAAGGGCAGGCACAGGTAG GCACAGGCAGGCACATGCAGGCACAGGCAGGCACAGGCAGGCACGGGCAGGCACAGGCAGGCACA GGCTTTTCATCATTTTTTAAAGATTGTTTCTACATTTAAAATTTAAAAAAATCAGCGATAAAACC TTTAAAAATGAGAAATTTAAAAATCCCTCAAAAATTTAAATATAT Right flanking sequence: Indices 18712184 -- 18712683 TAATTTAATTTAATAATTAATTTTCACACATTTTTTCTCAGAGACTATATTAGTAGTTAAACTAT TCAGTTCAAAAGTTACGTCAGAACCCAACCAAAAATTATAATAAATCAGAAATGGCACCGGCTGG GCGTCTGCCTTGACATCTGCGCCGGTCTGGTGGAAACCCTCTCCCAACACATTTGCCGCCATTTC CTTTTATTCTGTCTTCAATGTCGCGTTGTGTATGGTGACTTTCTTCTATTTTTTCTGATTATTTT AACATTTTATGGACAATCTTCGTATCGATTTTTTGAGAAATGGTAAGTTTTAGATTTAAAGTTTC AATATATTAAGAAGAAGTGGCCTTTTGCACTGAGTTCTAGAAGTGTTAAAAATACCATTTTTAGG AATTTTTACCGCAGACAGTCGATGAGTAGCGTGCAATTTGAGAGATTTAGTGAAAAGATGAGAGA GTGAGAGACTTGGTTATAGCGTGCGTTTTTGAGAGATTTAGAGAA Found at i:18712188 original size:8 final size:8 Alignment explanation
Indices: 18712154--18712189 Score: 42 Period size: 8 Copynumber: 4.4 Consensus size: 8 18712144 TAAATATATT * 18712154 TTTTAAAA 1 TTTTTAAA * 18712162 TTTTAAAA 1 TTTTTAAA 18712170 TTTTTAAAA 1 TTTTT-AAA * 18712179 TTTTTTAA 1 TTTTTAAA 18712187 TTT 1 TTT 18712190 AATTTAATAA Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 8 17 0.68 9 8 0.32 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (8 bp): TTTTTAAA Left flanking sequence: Indices 18711654 -- 18712153 TAAAATAGTTTTTATAAGCTTCGAAAATATTAAAATTTTGGGAAACCATTCAAAATTTTCAGCGA ATTACCTTCAAAATCACATGGATCTTGCTCCTCACCGCGACCACTGTTTCAAGTTGCTCACGGAG CACAGGAGCCCTCCAGAAGCCGGGGAAATAATTTTACTGCTCAGCTCAATTAGGTGTGCCATCAA GTCATTTTATAATGTAACTAGAATTTCTGATATTTTTAATGTCGAAAATTTTGATGACGATGTTA AAGTTGTACTTGTTGAATAAAGTCAAGATGTCAGGCACAGGCAGGCAAGGGCAGGCACAGGTAGG CACAGGCAGGCACATGCAGGCACAGGCAGGCACAGGCAGGCACGGGCAGGCACAGGCAGGCACAG GCTTTTCATCATTTTTTAAAGATTGTTTCTACATTTAAAATTTAAAAAAATCAGCGATAAAACCT TTAAAAATGAGAAATTTAAAAATCCCTCAAAAATTTAAATATATT Right flanking sequence: Indices 18712190 -- 18712689 AATTTAATAATTAATTTTCACACATTTTTTCTCAGAGACTATATTAGTAGTTAAACTATTCAGTT CAAAAGTTACGTCAGAACCCAACCAAAAATTATAATAAATCAGAAATGGCACCGGCTGGGCGTCT GCCTTGACATCTGCGCCGGTCTGGTGGAAACCCTCTCCCAACACATTTGCCGCCATTTCCTTTTA TTCTGTCTTCAATGTCGCGTTGTGTATGGTGACTTTCTTCTATTTTTTCTGATTATTTTAACATT TTATGGACAATCTTCGTATCGATTTTTTGAGAAATGGTAAGTTTTAGATTTAAAGTTTCAATATA TTAAGAAGAAGTGGCCTTTTGCACTGAGTTCTAGAAGTGTTAAAAATACCATTTTTAGGAATTTT TACCGCAGACAGTCGATGAGTAGCGTGCAATTTGAGAGATTTAGTGAAAAGATGAGAGAGTGAGA GACTTGGTTATAGCGTGCGTTTTTGAGAGATTTAGAGAAAGTTAG Found at i:18713022 original size:7 final size:7 Alignment explanation
Indices: 18713006--18713024 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 18712996 TAGGAAGGAG 18713006 GCCCCCC 1 GCCCCCC * 18713013 GCCCCGC 1 GCCCCCC 18713020 GCCCC 1 GCCCC 18713025 TGGGGGTTTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.00, C:0.79, G:0.21, T:0.00 Consensus pattern (7 bp): GCCCCCC Left flanking sequence: Indices 18712506 -- 18713005 TTCAATATATTAAGAAGAAGTGGCCTTTTGCACTGAGTTCTAGAAGTGTTAAAAATACCATTTTT AGGAATTTTTACCGCAGACAGTCGATGAGTAGCGTGCAATTTGAGAGATTTAGTGAAAAGATGAG AGAGTGAGAGACTTGGTTATAGCGTGCGTTTTTGAGAGATTTAGAGAAAGTTAGAGAGATTTTTT TAGAAACTATTTCGTAATTGGGTTACTGTAATAATTCAAATGATTATTATTAATTTCATAACTCT ATTTCATAATTTTTGTTACCCCGGATTCGATCCCAGGACACGATTCGTATAAACAGATGCTTTAC CAATACACTATAGATGTAGTCGAAACCCCAGTAGAATTTGACTCTTTTCTTTTCCGAAACATCTG CCGTTTAGATGACGGCAAACAGATGGCGTTTTTTCCGAAATAAGAGAAGCAACAAGACATGATTT GCATGAATGCAAGTGTTACCGAGGTGAATGAATCATAGGAAGGAG Right flanking sequence: Indices 18713025 -- 18713524 TGGGGGTTTTAAAGGTGGAGTAGCGCCAGTGGGGAAATTGTTAAAAACCACTCTTTTGGTCCCAA AATGACCAAATATCATGAGAAAACTTTTCAAAAATTTTTTGGAAATTTTTTATTTACTGTCAAAA AGTGACAATTACTCAGTTTTTGCCACTCATAATTTTGGAAGTCGACCAAAAAAAAAAAATTTTTT CTACATTTTTTATGTTTTAATTTTGTTTAAATTATTTGTATTAGAACATTGTAGGGGTCGAAACA TGCGACATTTCTTTAAATTTCCTCAAAAGCTCATATTTTTCAAAATTTTGGCAATTTGCCAAAAA CTTTGACCGGAAATTTGACCGGAAATTATGAAAAATCTAAAAATTTTTGGAGTGTTTTATTATGA TATTCAGTTGTTTTGGATCATTATAAGTGCATTTAGACAAAATGCCCACTGGCGCTACTCCACCT TTAAGAGTCGCACAAGATGAAAATCTGAAGGATGATCAAGTTAAA Found at i:18713895 original size:10 final size:10 Alignment explanation
Indices: 18713869--18713900 Score: 55 Period size: 10 Copynumber: 3.1 Consensus size: 10 18713859 GAGAGACTTG 18713869 GTTATAGTAA 1 GTTATAGTAA 18713879 GGTTATAGTAA 1 -GTTATAGTAA 18713890 GTTATAGTAA 1 GTTATAGTAA 18713900 G 1 G 18713901 AACCAATAGT Statistics Matches: 21, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 10 11 0.52 11 10 0.48 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (10 bp): GTTATAGTAA Left flanking sequence: Indices 18713369 -- 18713868 CGGAAATTATGAAAAATCTAAAAATTTTTGGAGTGTTTTATTATGATATTCAGTTGTTTTGGATC ATTATAAGTGCATTTAGACAAAATGCCCACTGGCGCTACTCCACCTTTAAGAGTCGCACAAGATG AAAATCTGAAGGATGATCAAGTTAAAGTTAAAATTTTTTTTATTCTTCCTAGATTTTCTTCTCTG ATGTTTCCGAATTCAGCTACTCCACATTTGAAATCAAAATCCCCAGATTTGCAAAACGTCTTATT TCCAGATGATTGATGCACGTGCTCGTTGTGTGTTTGCTCAGATCACGTAATGGACCTACCGGGAA TAGCGAATGCTTTCGATATTTTGTTCGATCCCGATGAAGAGGTACATCACGCCTGGGGCGATGTG AGTAGTGATAGAGTGTTAAAAATACCATTTTAGGAATTCTTGCCACAGACCGTTGACGAATAGTG TGTGTTTTACGATATTCAGAGAAAAACGAGAGAGTGAGAGACTTG Right flanking sequence: Indices 18713901 -- 18714400 AACCAATAGTTTTGGCGCGGCAGCATCTTTTTTTTCTATTTAAATATTAATTTTCTTCCAATTTC AGAACCAGTAAAAATGTCGTACATCGATACTTCCCTGGTGGAGCCACTAAAAAAATTGGAAATAA ATCTACCAACTGGCAACAATAATGGGTACACTTTGATCAAGCTGTGCAGAACGGCTTACCCGCCT ACGATCCTGCGAGACCGGCATTTCTCAACACTTGTTGCAAGGTACAAGACGGACGAAGAGTTCAA AAACGAAGCAACTTTTGTGGAGAAGGTGTTAAACGACAAGATCGAGCAAGAAGCGTGAATTCTTG AAAATGCATGGACCAGCAGTGGAAAGACGAGACGTTGATATACCAGACTTCTGCTCCCCATTGAT CTGATTTGTAATTTTGTATTTTTGGTGTCTGATTTTCACAATTAATAATTGTGATAAATTTAATT TAATTTAATCAGAATTTTCACCTTTTTTATCTATTTATCATCTTT Found at i:18714311 original size:7 final size:8 Alignment explanation
Indices: 18714295--18714314 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 18714285 ATTGATCTGA 18714295 TTTGTAAT 1 TTTGTAAT * 18714303 TTTGTATT 1 TTTGTAAT 18714311 TTTG 1 TTTG 18714315 GTGTCTGATT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70 Consensus pattern (8 bp): TTTGTAAT Left flanking sequence: Indices 18713795 -- 18714294 TTCTTGCCACAGACCGTTGACGAATAGTGTGTGTTTTACGATATTCAGAGAAAAACGAGAGAGTG AGAGACTTGGTTATAGTAAGGTTATAGTAAGTTATAGTAAGAACCAATAGTTTTGGCGCGGCAGC ATCTTTTTTTTCTATTTAAATATTAATTTTCTTCCAATTTCAGAACCAGTAAAAATGTCGTACAT CGATACTTCCCTGGTGGAGCCACTAAAAAAATTGGAAATAAATCTACCAACTGGCAACAATAATG GGTACACTTTGATCAAGCTGTGCAGAACGGCTTACCCGCCTACGATCCTGCGAGACCGGCATTTC TCAACACTTGTTGCAAGGTACAAGACGGACGAAGAGTTCAAAAACGAAGCAACTTTTGTGGAGAA GGTGTTAAACGACAAGATCGAGCAAGAAGCGTGAATTCTTGAAAATGCATGGACCAGCAGTGGAA AGACGAGACGTTGATATACCAGACTTCTGCTCCCCATTGATCTGA Right flanking sequence: Indices 18714315 -- 18714814 GTGTCTGATTTTCACAATTAATAATTGTGATAAATTTAATTTAATTTAATCAGAATTTTCACCTT TTTTATCTATTTATCATCTTTAAAAAACAGAATATGAACCCAAATATGAAATAACTTTTTAGAAA AGCTATACAAACTGCAGAGAAACAAAAACTCAATCATTAAGTTATTTAAAAATGATCACAAAAAA TATTTTACCCTGCGTGGGATTGAACCCAGCAGGCAGCCACTCGACTACCCCACAGCCCAGCCATC AAAACTTGTGTTATCTCATATTTTCCAGCGTTAAAGTGATAAAAACCAAGTTTTGCCGTCCAAAT CCGGTGCAAGTTCAGTGTCGGATACATTTTTAAGCTTACATCATCAGTTTTAAGGCCATTTAACG AAACTCGTGCGAGGGCATCAATATTTAAGTCGTCGCAAACTCATATGAGAATGTGCGCGGGATGG CTTCACAGGTAACGGCTTAGGTTTAGGAACAACAGGGTTAAGGGT Found at i:18715146 original size:10 final size:10 Alignment explanation
Indices: 18715131--18715159 Score: 58 Period size: 10 Copynumber: 2.9 Consensus size: 10 18715121 ATTGTTTTGG 18715131 AATTTTCTGA 1 AATTTTCTGA 18715141 AATTTTCTGA 1 AATTTTCTGA 18715151 AATTTTCTG 1 AATTTTCTG 18715160 GTACTTGTTG Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 19 1.00 ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52 Consensus pattern (10 bp): AATTTTCTGA Left flanking sequence: Indices 18714631 -- 18715130 CGTCCAAATCCGGTGCAAGTTCAGTGTCGGATACATTTTTAAGCTTACATCATCAGTTTTAAGGC CATTTAACGAAACTCGTGCGAGGGCATCAATATTTAAGTCGTCGCAAACTCATATGAGAATGTGC GCGGGATGGCTTCACAGGTAACGGCTTAGGTTTAGGAACAACAGGGTTAAGGGTGCGCTGGTTCG AGTCCGCGGGGTGGTGGGAAAAATTTTCATTGGCAGACCGCAAAATATTCAAAAACAGATAAACG GCAGTTGATTTGCAGAATGACAGATGGCAGACCGCTGGTAGATAAATAGCAGACCGCTGGTGGAC CGTTCACTGTTCGCCTACTAACTGCCAGCGGTCTGCCAACTATCTGCCAACTAATAATCGCCGTT CTACCTGTGGGCTTCACCACCGCATACCCTGTCAAAAATTTTGTTGAAACGTGGAAAAATTTATG CAGTTTTTGGAATTTAAAATTCATATGTATTCCGAATTGTTTTGG Right flanking sequence: Indices 18715160 -- 18715659 GTACTTGTTGAATAAAGTCAAGTTGCCAGACACATGCAGGCACATGCAGGCACAGGCAGGCACAG GCAGGCTTTGTCAAAAACTATTTGTCAATCTGTTTGAAAGAAATCTGAAAAAAGTTGCCAAGCTT TTATAAAAGTTTTTCACACACTTTTTTGACAGAAAATACAGGGTGGTCCATACTTATGGTGACCA CTTCTTGCGCCTATAAAATTTGATAGAACTTCCTAAATATAGTTAAACCACACAGGGTTTATTCA CAATTTTCTAGCAAACAAAAAATGATATTAAACTTTGAAAATATCTGCTTGTGCGACTGAGCAGA ACCCTTGAAACAAAGAAAAAAATTTGTCGTTGGCACGCTACTTGCCTATATTTCGCTTTCTCAGG TCCTTTCTAGCTTCTCCTGCAGATAAGAGATGTTTTATGACACATTTCAAGATGTTTTAAATCGG AGAATTCGTTTTATAGTACATTTTATATAGTTGCAAATCTCACGC Found at i:18715205 original size:10 final size:10 Alignment explanation
Indices: 18715186--18715230 Score: 69 Period size: 10 Copynumber: 4.5 Consensus size: 10 18715176 GTCAAGTTGC * * 18715186 CAGACACATG 1 CAGGCACAGG * 18715196 CAGGCACATG 1 CAGGCACAGG 18715206 CAGGCACAGG 1 CAGGCACAGG 18715216 CAGGCACAGG 1 CAGGCACAGG 18715226 CAGGC 1 CAGGC 18715231 TTTGTCAAAA Statistics Matches: 33, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 10 33 1.00 ACGTcount: A:0.31, C:0.31, G:0.33, T:0.04 Consensus pattern (10 bp): CAGGCACAGG Left flanking sequence: Indices 18714686 -- 18715185 GTTTTAAGGCCATTTAACGAAACTCGTGCGAGGGCATCAATATTTAAGTCGTCGCAAACTCATAT GAGAATGTGCGCGGGATGGCTTCACAGGTAACGGCTTAGGTTTAGGAACAACAGGGTTAAGGGTG CGCTGGTTCGAGTCCGCGGGGTGGTGGGAAAAATTTTCATTGGCAGACCGCAAAATATTCAAAAA CAGATAAACGGCAGTTGATTTGCAGAATGACAGATGGCAGACCGCTGGTAGATAAATAGCAGACC GCTGGTGGACCGTTCACTGTTCGCCTACTAACTGCCAGCGGTCTGCCAACTATCTGCCAACTAAT AATCGCCGTTCTACCTGTGGGCTTCACCACCGCATACCCTGTCAAAAATTTTGTTGAAACGTGGA AAAATTTATGCAGTTTTTGGAATTTAAAATTCATATGTATTCCGAATTGTTTTGGAATTTTCTGA AATTTTCTGAAATTTTCTGGTACTTGTTGAATAAAGTCAAGTTGC Right flanking sequence: Indices 18715231 -- 18715730 TTTGTCAAAAACTATTTGTCAATCTGTTTGAAAGAAATCTGAAAAAAGTTGCCAAGCTTTTATAA AAGTTTTTCACACACTTTTTTGACAGAAAATACAGGGTGGTCCATACTTATGGTGACCACTTCTT GCGCCTATAAAATTTGATAGAACTTCCTAAATATAGTTAAACCACACAGGGTTTATTCACAATTT TCTAGCAAACAAAAAATGATATTAAACTTTGAAAATATCTGCTTGTGCGACTGAGCAGAACCCTT GAAACAAAGAAAAAAATTTGTCGTTGGCACGCTACTTGCCTATATTTCGCTTTCTCAGGTCCTTT CTAGCTTCTCCTGCAGATAAGAGATGTTTTATGACACATTTCAAGATGTTTTAAATCGGAGAATT CGTTTTATAGTACATTTTATATAGTTGCAAATCTCACGCCTCTGTAGTGGACGGTTAAAGTAAGT TAAAGTATGAACGTTGAAACGTCAGACGTTCGACTCGTCATGGCA Found at i:18716434 original size:10 final size:10 Alignment explanation
Indices: 18716412--18716435 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 18716402 TTACCCAACA * 18716412 CATTTGCCCT 1 CATTTCCCCT * 18716422 CATTTCCCTT 1 CATTTCCCCT 18716432 CATT 1 CATT 18716436 CAGTTTTTTC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.12, C:0.38, G:0.04, T:0.46 Consensus pattern (10 bp): CATTTCCCCT Left flanking sequence: Indices 18715912 -- 18716411 TTCAGTTGGCAGAAGCTGGAAATGAATGTAACACACACCGCAGCTGTTTAATCTTAAAGAAATAT ATTTTTTCTTCTAAAAATAATAGACTAACTGTGAAATGAACCCGTTTCAAAACTCCCACGATCAA AAATTTGCTGCGTGCCAAAAGGTCTTCTGCATGAAAAGATGCGTTACTTTGACGGCGCTACTACA ACTCCGTTGTTTGACAAATGAAAAAGTTTTTTATGTTAAATAGAAGGAAAATATTTTTTCTATTG CTTCAATACAAGAATGTTGAATTTTAACGTTTAAGTTGCGTAAAAACAAGCCGCGACTGAGCGCG ACACTGGTCACCATAATTATGGACCACCCTGTATATTAGAAGGTTAGGTATTTTCCTAGTTGTAA AGTTACGTCAGAACACAAAGAAATGTAATTAATCAGAAATGGCACTCTCTGGGCTTCTGCCATGA CAGCTGCGCAGGTCTGGTGGGAACCCTCTGGTCCGTTACCCAACA Right flanking sequence: Indices 18716436 -- 18716935 CAGTTTTTTCGCCTTGTGTATGGTGACTTTCTTCTATTTTCTCTGCTTTTTTTGACATTTTATGG GCGGTCTTCGTATTGATTTTTTGAAAAATGGTAAGTTTTACTGTTAGATTTAAAGTTTCAATAAT TAAGGGAGAAATGAATATTTTGCACTGAGTTCTAGAAAACAATCCCAATATACTGAATTTAAATG TGTAAAACTATGCCATTTTTCCGAATTGTTTTCTATATATATATATATATATATATATATATATA AATGCCAATCGAGCCGGTTTCACAATCCGATTCATATCATAAGAATGTGCCATTCTTGCAGGGAA GCCAGTCGCGCCAAGCCTGTCAGGCTCCTCGGTGCCGACAGACAGCAGATTGGTTAGTTATAAAA AATCAATAACCATGTTCAGTTTTTTTTTTTAATTTACAGCGATCGAACTCTGTGAGATATGCCGG TCAACTCTGAACCACGCGCGCCGATCAGAGTTCTTCAAGTATGCT Found at i:18717155 original size:10 final size:10 Alignment explanation
Indices: 18717142--18717161 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 18717132 TTTTTAATTC 18717142 TTCTTCTTTT 1 TTCTTCTTTT * 18717152 TTCTTTTTTT 1 TTCTTCTTTT 18717162 AAAATAAACC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85 Consensus pattern (10 bp): TTCTTCTTTT Left flanking sequence: Indices 18716642 -- 18717141 GCCATTTTTCCGAATTGTTTTCTATATATATATATATATATATATATATATATAAATGCCAATCG AGCCGGTTTCACAATCCGATTCATATCATAAGAATGTGCCATTCTTGCAGGGAAGCCAGTCGCGC CAAGCCTGTCAGGCTCCTCGGTGCCGACAGACAGCAGATTGGTTAGTTATAAAAAATCAATAACC ATGTTCAGTTTTTTTTTTTAATTTACAGCGATCGAACTCTGTGAGATATGCCGGTCAACTCTGAA CCACGCGCGCCGATCAGAGTTCTTCAAGTATGCTCTTCCTGTCTTCAAACGACATTACAACTGTT GATGTCTTCGACAAAATAGGTATTTTACGATTATTAAGTAGTCTTGATTTAATTTTTTTTATTCT AGCCCCGCCACTATTCACACGGCACATTCAATCCATTAATCTTGTGCGTCGTTCCGCTACCTGTC ACACTTCTACTGCCTTCACCTAGTCTAATTAATGCTTTTTAATTC Right flanking sequence: Indices 18717162 -- 18717661 AAAATAAACCCAAAATAACCATACACTATGTACCGATTTGTGGTAATAATTATCCCGATTTCCTA CCAAAACTGGTATGGCTGAAATTCCGCTACAGTACTTTTGCTATCGACCTATTATGACTGTCATA ATCGATCATAACAGGTTGGAAGCAAAAGTTCGTTGTGGTAGTGGGATTTCCGCTTATACTACTTC TACCACGTTCTAAAAATTTTTAAAATCTTCTAAAAAAATTTCAAAATTTTCTGACATTTTCTGGA ACGTTCTAAAATTTTCTGAAATTTTCTGGATTTTTTTCGAATTTTTCTAAATTTTTCTGGGACGT TTCCTGGAATTTCTGGATTTTTCATAGAATTATTGGAACGTCCTAGAATTTTCTGAAATCTTCTG AAATCTTCTGGAACGTTCTAAAATTTTCTAAAATTTGCTGAATTTTTTAAAAAGAATTTTCTAAA ATTTTCTGGATTTTGTTAGAGTTTTCTGGAATCTTCTGGAATTTT Found at i:18717157 original size:7 final size:7 Alignment explanation
Indices: 18717145--18717160 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 18717135 TTAATTCTTC 18717145 TTCTTTT 1 TTCTTTT 18717152 TTCTTTT 1 TTCTTTT 18717159 TT 1 TT 18717161 TAAAATAAAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (7 bp): TTCTTTT Left flanking sequence: Indices 18716645 -- 18717144 ATTTTTCCGAATTGTTTTCTATATATATATATATATATATATATATATATAAATGCCAATCGAGC CGGTTTCACAATCCGATTCATATCATAAGAATGTGCCATTCTTGCAGGGAAGCCAGTCGCGCCAA GCCTGTCAGGCTCCTCGGTGCCGACAGACAGCAGATTGGTTAGTTATAAAAAATCAATAACCATG TTCAGTTTTTTTTTTTAATTTACAGCGATCGAACTCTGTGAGATATGCCGGTCAACTCTGAACCA CGCGCGCCGATCAGAGTTCTTCAAGTATGCTCTTCCTGTCTTCAAACGACATTACAACTGTTGAT GTCTTCGACAAAATAGGTATTTTACGATTATTAAGTAGTCTTGATTTAATTTTTTTTATTCTAGC CCCGCCACTATTCACACGGCACATTCAATCCATTAATCTTGTGCGTCGTTCCGCTACCTGTCACA CTTCTACTGCCTTCACCTAGTCTAATTAATGCTTTTTAATTCTTC Right flanking sequence: Indices 18717161 -- 18717660 TAAAATAAACCCAAAATAACCATACACTATGTACCGATTTGTGGTAATAATTATCCCGATTTCCT ACCAAAACTGGTATGGCTGAAATTCCGCTACAGTACTTTTGCTATCGACCTATTATGACTGTCAT AATCGATCATAACAGGTTGGAAGCAAAAGTTCGTTGTGGTAGTGGGATTTCCGCTTATACTACTT CTACCACGTTCTAAAAATTTTTAAAATCTTCTAAAAAAATTTCAAAATTTTCTGACATTTTCTGG AACGTTCTAAAATTTTCTGAAATTTTCTGGATTTTTTTCGAATTTTTCTAAATTTTTCTGGGACG TTTCCTGGAATTTCTGGATTTTTCATAGAATTATTGGAACGTCCTAGAATTTTCTGAAATCTTCT GAAATCTTCTGGAACGTTCTAAAATTTTCTAAAATTTGCTGAATTTTTTAAAAAGAATTTTCTAA AATTTTCTGGATTTTGTTAGAGTTTTCTGGAATCTTCTGGAATTT Found at i:18717407 original size:9 final size:9 Alignment explanation
Indices: 18717369--18717407 Score: 30 Period size: 9 Copynumber: 4.0 Consensus size: 9 18717359 CCACGTTCTA * 18717369 AAAATTTTT 1 AAAATTTTC * 18717378 AAAATCTTCTAA 1 AAAAT-TT-T-C * 18717390 AAAAATTTC 1 AAAATTTTC 18717399 AAAATTTTC 1 AAAATTTTC 18717408 TGACATTTTC Statistics Matches: 23, Mismatches: 4, Indels: 6 0.70 0.12 0.18 Matches are distributed among these distances: 9 13 0.57 10 3 0.13 11 3 0.13 12 4 0.17 ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41 Consensus pattern (9 bp): AAAATTTTC Left flanking sequence: Indices 18716869 -- 18717368 CGAACTCTGTGAGATATGCCGGTCAACTCTGAACCACGCGCGCCGATCAGAGTTCTTCAAGTATG CTCTTCCTGTCTTCAAACGACATTACAACTGTTGATGTCTTCGACAAAATAGGTATTTTACGATT ATTAAGTAGTCTTGATTTAATTTTTTTTATTCTAGCCCCGCCACTATTCACACGGCACATTCAAT CCATTAATCTTGTGCGTCGTTCCGCTACCTGTCACACTTCTACTGCCTTCACCTAGTCTAATTAA TGCTTTTTAATTCTTCTTCTTTTTTCTTTTTTTAAAATAAACCCAAAATAACCATACACTATGTA CCGATTTGTGGTAATAATTATCCCGATTTCCTACCAAAACTGGTATGGCTGAAATTCCGCTACAG TACTTTTGCTATCGACCTATTATGACTGTCATAATCGATCATAACAGGTTGGAAGCAAAAGTTCG TTGTGGTAGTGGGATTTCCGCTTATACTACTTCTACCACGTTCTA Right flanking sequence: Indices 18717408 -- 18717907 TGACATTTTCTGGAACGTTCTAAAATTTTCTGAAATTTTCTGGATTTTTTTCGAATTTTTCTAAA TTTTTCTGGGACGTTTCCTGGAATTTCTGGATTTTTCATAGAATTATTGGAACGTCCTAGAATTT TCTGAAATCTTCTGAAATCTTCTGGAACGTTCTAAAATTTTCTAAAATTTGCTGAATTTTTTAAA AAGAATTTTCTAAAATTTTCTGGATTTTGTTAGAGTTTTCTGGAATCTTCTGGAATTTTATAGAA TTTTCTGAAATGTTTTGGAACGTTCTAGAATTTTCTAGAACGTTCTAAAATTTTCTGAAGTTTTC GGGATTTTTTGAAGAATTTTCTAAAATTTTGTAGGAATTTTGAAAAAATTCTGGAGTTTCTTTTT TGAAATTAAAAAAATTTAATTTGTATTTTGTTTGGAATTTCCTAAATTTTTCTGGAACGTTTCCT GCGATTTATGGATTTTCATAGAATTATTGGAACCTCCTAGAATTT Found at i:18718656 original size:7 final size:7 Alignment explanation
Indices: 18718644--18718680 Score: 38 Period size: 7 Copynumber: 4.7 Consensus size: 7 18718634 TAGGTCATCT 18718644 ATAGGTC 1 ATAGGTC 18718651 ATAGGTC 1 ATAGGTC 18718658 ATATAGGTCAC 1 --ATAGGT--C 18718669 ATAGGTC 1 ATAGGTC 18718676 ATAGG 1 ATAGG 18718681 GATCACGGAA Statistics Matches: 26, Mismatches: 0, Indels: 8 0.76 0.00 0.24 Matches are distributed among these distances: 7 13 0.50 9 12 0.46 11 1 0.04 ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27 Consensus pattern (7 bp): ATAGGTC Left flanking sequence: Indices 18718144 -- 18718643 TTCTGAAATTTTCTAAAATTTTCTGAAATTTTATAGAATTTTCTGAAATTTTTTGGAACGTTCTA AAATTTTCTGAAATTTGCTGAATTTTTTAAAAAGAATTTTCTAAAATTTTCTGGATTTTGTTAGA ATTTTCTGAAATCTTCTGGAACGTTCTGGAATTTTCTTGAACGTTCCGGAATTTCCTGAAATTTT CTGAATTTTCTAAAATTTTTCTGGAATTTTTAGAATTTTCTGAAATCTTCTGGACCACAGTTTTT TTTAGAATTTTTTTCTTAGTTTTTTTTTGTAAAATTTATTTCAAAGATTTCACAAAATCAACAAA CAATAACAATTTAAACAAATTTAGGCAATATTATTGTGAAGAAAACGGTCTTCCTGAGAAAATGC TTGTTGATCTTTTACTGGAGAGTTTTCGTTCTGATTTTTCCAGCGGAGAATCAGTTTGCGAACAA TAAAAATGAAAAGAACAAAGAAAAATGGAACAATATAGGTCATCT Right flanking sequence: Indices 18718681 -- 18719180 GATCACGGAAAATCAGTTTTTTTCCAACTTCGACAAAACTGGGGATGGCACGTGCCGTGAAGCTT CTTCTGCATATATCCGACGCCAAACCTCTGCTCAGACATTTTGAGTGCTCTGCGGAGCAATTAAC ATTGAAAATTGCAAGGGTAGATTTGCAATGAAGGAATGTGAGGGCACATGCACTTGTTGCTCCTG AAATGATATTGAAGTAGAACATCGAACGAAGATTTTTGAAAAGTCATTTGACATGGATTTTTGCT TTTTTTTGAAGCTAAGTTTTAGAAGGTTCCAGAAAATTTTAGCAAATTCGAAAAAATTGCAGAAA ATTCAAGGATGTTCCTGAAAATCTTTAAAATATTCCAGAAAATTTCAGAAAATTTTAAAATGATC TAGAAAACTCTAGGACGTTCCTGAAAATTTCAGAAAATTCCGGAACCTTACAAAAAATTTCAGAA AATTTCATCAAACTCTAAAAATACCAGAAAATTCTAGGAAAGCCT Found at i:18718665 original size:9 final size:9 Alignment explanation
Indices: 18718631--18718678 Score: 57 Period size: 9 Copynumber: 5.3 Consensus size: 9 18718621 AAATGGAACA 18718631 ATATAGGTC 1 ATATAGGTC 18718640 ATCTATAGGTC 1 A--TATAGGTC 18718651 --ATAGGTC 1 ATATAGGTC 18718658 ATATAGGTC 1 ATATAGGTC * 18718667 ACATAGGTC 1 ATATAGGTC 18718676 ATA 1 ATA 18718679 GGGATCACGG Statistics Matches: 33, Mismatches: 2, Indels: 8 0.77 0.05 0.19 Matches are distributed among these distances: 7 7 0.21 9 18 0.55 11 8 0.24 ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31 Consensus pattern (9 bp): ATATAGGTC Left flanking sequence: Indices 18718131 -- 18718630 GTTTTCTAAGATCTTCTGAAATTTTCTAAAATTTTCTGAAATTTTATAGAATTTTCTGAAATTTT TTGGAACGTTCTAAAATTTTCTGAAATTTGCTGAATTTTTTAAAAAGAATTTTCTAAAATTTTCT GGATTTTGTTAGAATTTTCTGAAATCTTCTGGAACGTTCTGGAATTTTCTTGAACGTTCCGGAAT TTCCTGAAATTTTCTGAATTTTCTAAAATTTTTCTGGAATTTTTAGAATTTTCTGAAATCTTCTG GACCACAGTTTTTTTTAGAATTTTTTTCTTAGTTTTTTTTTGTAAAATTTATTTCAAAGATTTCA CAAAATCAACAAACAATAACAATTTAAACAAATTTAGGCAATATTATTGTGAAGAAAACGGTCTT CCTGAGAAAATGCTTGTTGATCTTTTACTGGAGAGTTTTCGTTCTGATTTTTCCAGCGGAGAATC AGTTTGCGAACAATAAAAATGAAAAGAACAAAGAAAAATGGAACA Right flanking sequence: Indices 18718679 -- 18719178 GGGATCACGGAAAATCAGTTTTTTTCCAACTTCGACAAAACTGGGGATGGCACGTGCCGTGAAGC TTCTTCTGCATATATCCGACGCCAAACCTCTGCTCAGACATTTTGAGTGCTCTGCGGAGCAATTA ACATTGAAAATTGCAAGGGTAGATTTGCAATGAAGGAATGTGAGGGCACATGCACTTGTTGCTCC TGAAATGATATTGAAGTAGAACATCGAACGAAGATTTTTGAAAAGTCATTTGACATGGATTTTTG CTTTTTTTTGAAGCTAAGTTTTAGAAGGTTCCAGAAAATTTTAGCAAATTCGAAAAAATTGCAGA AAATTCAAGGATGTTCCTGAAAATCTTTAAAATATTCCAGAAAATTTCAGAAAATTTTAAAATGA TCTAGAAAACTCTAGGACGTTCCTGAAAATTTCAGAAAATTCCGGAACCTTACAAAAAATTTCAG AAAATTTCATCAAACTCTAAAAATACCAGAAAATTCTAGGAAAGC Found at i:18719271 original size:10 final size:10 Alignment explanation
Indices: 18719258--18719287 Score: 46 Period size: 10 Copynumber: 3.0 Consensus size: 10 18719248 GCCTAAAATG 18719258 TTCCAAAAAA 1 TTCCAAAAAA * 18719268 TTCCAGAAAA 1 TTCCAAAAAA * 18719278 TCCCAAAAAA 1 TTCCAAAAAA 18719288 AATCAGAAAG Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 17 1.00 ACGTcount: A:0.57, C:0.23, G:0.03, T:0.17 Consensus pattern (10 bp): TTCCAAAAAA Left flanking sequence: Indices 18718758 -- 18719257 TCCGACGCCAAACCTCTGCTCAGACATTTTGAGTGCTCTGCGGAGCAATTAACATTGAAAATTGC AAGGGTAGATTTGCAATGAAGGAATGTGAGGGCACATGCACTTGTTGCTCCTGAAATGATATTGA AGTAGAACATCGAACGAAGATTTTTGAAAAGTCATTTGACATGGATTTTTGCTTTTTTTTGAAGC TAAGTTTTAGAAGGTTCCAGAAAATTTTAGCAAATTCGAAAAAATTGCAGAAAATTCAAGGATGT TCCTGAAAATCTTTAAAATATTCCAGAAAATTTCAGAAAATTTTAAAATGATCTAGAAAACTCTA GGACGTTCCTGAAAATTTCAGAAAATTCCGGAACCTTACAAAAAATTTCAGAAAATTTCATCAAA CTCTAAAAATACCAGAAAATTCTAGGAAAGCCTAAGAAGGTTTCAGAAAAATACGGATTTTTTTT GTAAAATTTAGCCATTTTTAAGAAATTTCTGAAGAGCCTAAAATG Right flanking sequence: Indices 18719288 -- 18719787 AATCAGAAAGTTTTAGAAAATTTGAGAAGGTTTAAAATATATTTAAAATATTTTTAGAACGTTTC AAAAAATTCAAAAAATGTTTTTGAATGCTGGAGTAGGTTTCAGAAAATTTTGAAGAATTTCAGAA AATCCCAGAAAGTCTCCAAAAAATCCAGAAATTTCCAGAAATTTCAAAAAAAATCAGAACGTTTT TGAAAATTTGATAATGTTTAATAAAATTTAAAAATATTTTTAGAACGTTTCAAAAAATTCCAGAA CATTTAAAAAAGTTCCAGGAAGTTCAATTTCAGAAAATGTTAGAAATTTTTTTGAAAGCTGGAGT ATGTTTCAGAAAGTTTTGGAAATTTTCAGAAAATTCCAGAAAATTTCACAAAAAAATTTAAACAT TTTTGAGAAATTTCAGAAAAGTCTAGAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATTC AGGAATTTTTTAGAACATTCGAGAAGATCTAAAATATATTTAAAA Found at i:18719305 original size:10 final size:10 Alignment explanation
Indices: 18719292--18719320 Score: 37 Period size: 10 Copynumber: 2.9 Consensus size: 10 18719282 AAAAAAAATC * 18719292 AGAAAGTTTT 1 AGAAAGTTTG * 18719302 AGAAAATTTG 1 AGAAAGTTTG * 18719312 AGAAGGTTT 1 AGAAAGTTT 18719321 AAAATATATT Statistics Matches: 15, Mismatches: 4, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 10 15 1.00 ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34 Consensus pattern (10 bp): AGAAAGTTTG Left flanking sequence: Indices 18718792 -- 18719291 GCTCTGCGGAGCAATTAACATTGAAAATTGCAAGGGTAGATTTGCAATGAAGGAATGTGAGGGCA CATGCACTTGTTGCTCCTGAAATGATATTGAAGTAGAACATCGAACGAAGATTTTTGAAAAGTCA TTTGACATGGATTTTTGCTTTTTTTTGAAGCTAAGTTTTAGAAGGTTCCAGAAAATTTTAGCAAA TTCGAAAAAATTGCAGAAAATTCAAGGATGTTCCTGAAAATCTTTAAAATATTCCAGAAAATTTC AGAAAATTTTAAAATGATCTAGAAAACTCTAGGACGTTCCTGAAAATTTCAGAAAATTCCGGAAC CTTACAAAAAATTTCAGAAAATTTCATCAAACTCTAAAAATACCAGAAAATTCTAGGAAAGCCTA AGAAGGTTTCAGAAAAATACGGATTTTTTTTGTAAAATTTAGCCATTTTTAAGAAATTTCTGAAG AGCCTAAAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATC Right flanking sequence: Indices 18719321 -- 18719820 AAAATATATTTAAAATATTTTTAGAACGTTTCAAAAAATTCAAAAAATGTTTTTGAATGCTGGAG TAGGTTTCAGAAAATTTTGAAGAATTTCAGAAAATCCCAGAAAGTCTCCAAAAAATCCAGAAATT TCCAGAAATTTCAAAAAAAATCAGAACGTTTTTGAAAATTTGATAATGTTTAATAAAATTTAAAA ATATTTTTAGAACGTTTCAAAAAATTCCAGAACATTTAAAAAAGTTCCAGGAAGTTCAATTTCAG AAAATGTTAGAAATTTTTTTGAAAGCTGGAGTATGTTTCAGAAAGTTTTGGAAATTTTCAGAAAA TTCCAGAAAATTTCACAAAAAAATTTAAACATTTTTGAGAAATTTCAGAAAAGTCTAGAATGTTC CAAAAAATTCCAGAAAATCCCAAAAAAAATTCAGGAATTTTTTAGAACATTCGAGAAGATCTAAA ATATATTTAAAAAATTTTTTAGAACATTTCAAAAAATTCAAAATA Found at i:18719364 original size:9 final size:9 Alignment explanation
Indices: 18719350--18719368 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 18719340 TTTAGAACGT 18719350 TTCAAAAAA 1 TTCAAAAAA 18719359 TTCAAAAAA 1 TTCAAAAAA 18719368 T 1 T 18719369 GTTTTTGAAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26 Consensus pattern (9 bp): TTCAAAAAA Left flanking sequence: Indices 18718850 -- 18719349 GAGGGCACATGCACTTGTTGCTCCTGAAATGATATTGAAGTAGAACATCGAACGAAGATTTTTGA AAAGTCATTTGACATGGATTTTTGCTTTTTTTTGAAGCTAAGTTTTAGAAGGTTCCAGAAAATTT TAGCAAATTCGAAAAAATTGCAGAAAATTCAAGGATGTTCCTGAAAATCTTTAAAATATTCCAGA AAATTTCAGAAAATTTTAAAATGATCTAGAAAACTCTAGGACGTTCCTGAAAATTTCAGAAAATT CCGGAACCTTACAAAAAATTTCAGAAAATTTCATCAAACTCTAAAAATACCAGAAAATTCTAGGA AAGCCTAAGAAGGTTTCAGAAAAATACGGATTTTTTTTGTAAAATTTAGCCATTTTTAAGAAATT TCTGAAGAGCCTAAAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATCAGAAAGTTTTAGA AAATTTGAGAAGGTTTAAAATATATTTAAAATATTTTTAGAACGT Right flanking sequence: Indices 18719369 -- 18719868 GTTTTTGAATGCTGGAGTAGGTTTCAGAAAATTTTGAAGAATTTCAGAAAATCCCAGAAAGTCTC CAAAAAATCCAGAAATTTCCAGAAATTTCAAAAAAAATCAGAACGTTTTTGAAAATTTGATAATG TTTAATAAAATTTAAAAATATTTTTAGAACGTTTCAAAAAATTCCAGAACATTTAAAAAAGTTCC AGGAAGTTCAATTTCAGAAAATGTTAGAAATTTTTTTGAAAGCTGGAGTATGTTTCAGAAAGTTT TGGAAATTTTCAGAAAATTCCAGAAAATTTCACAAAAAAATTTAAACATTTTTGAGAAATTTCAG AAAAGTCTAGAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATTCAGGAATTTTTTAGAAC ATTCGAGAAGATCTAAAATATATTTAAAAAATTTTTTAGAACATTTCAAAAAATTCAAAATATTT TACAAAATTTTTTGAATGCTGGAGTATGTTTCGGAAATTTTAGGG Found at i:18719459 original size:10 final size:10 Alignment explanation
Indices: 18719408--18719462 Score: 52 Period size: 10 Copynumber: 5.6 Consensus size: 10 18719398 AATTTTGAAG 18719408 AATTT-CAGA 1 AATTTCCAGA * * 18719417 AAATCCCAGA 1 AATTTCCAGA * 18719427 AAGTCTCCA-A 1 AA-TTTCCAGA ** 18719437 AAAATCCAGA 1 AATTTCCAGA 18719447 AATTTCCAGA 1 AATTTCCAGA 18719457 AATTTC 1 AATTTC 18719463 AAAAAAAATC Statistics Matches: 34, Mismatches: 9, Indels: 5 0.71 0.19 0.10 Matches are distributed among these distances: 9 7 0.21 10 24 0.71 11 3 0.09 ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24 Consensus pattern (10 bp): AATTTCCAGA Left flanking sequence: Indices 18718908 -- 18719407 TTTTTGAAAAGTCATTTGACATGGATTTTTGCTTTTTTTTGAAGCTAAGTTTTAGAAGGTTCCAG AAAATTTTAGCAAATTCGAAAAAATTGCAGAAAATTCAAGGATGTTCCTGAAAATCTTTAAAATA TTCCAGAAAATTTCAGAAAATTTTAAAATGATCTAGAAAACTCTAGGACGTTCCTGAAAATTTCA GAAAATTCCGGAACCTTACAAAAAATTTCAGAAAATTTCATCAAACTCTAAAAATACCAGAAAAT TCTAGGAAAGCCTAAGAAGGTTTCAGAAAAATACGGATTTTTTTTGTAAAATTTAGCCATTTTTA AGAAATTTCTGAAGAGCCTAAAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATCAGAAAG TTTTAGAAAATTTGAGAAGGTTTAAAATATATTTAAAATATTTTTAGAACGTTTCAAAAAATTCA AAAAATGTTTTTGAATGCTGGAGTAGGTTTCAGAAAATTTTGAAG Right flanking sequence: Indices 18719463 -- 18719962 AAAAAAAATCAGAACGTTTTTGAAAATTTGATAATGTTTAATAAAATTTAAAAATATTTTTAGAA CGTTTCAAAAAATTCCAGAACATTTAAAAAAGTTCCAGGAAGTTCAATTTCAGAAAATGTTAGAA ATTTTTTTGAAAGCTGGAGTATGTTTCAGAAAGTTTTGGAAATTTTCAGAAAATTCCAGAAAATT TCACAAAAAAATTTAAACATTTTTGAGAAATTTCAGAAAAGTCTAGAATGTTCCAAAAAATTCCA GAAAATCCCAAAAAAAATTCAGGAATTTTTTAGAACATTCGAGAAGATCTAAAATATATTTAAAA AATTTTTTAGAACATTTCAAAAAATTCAAAATATTTTACAAAATTTTTTGAATGCTGGAGTATGT TTCGGAAATTTTAGGGAAGTTTCAGAAAGTTCCAGAAATATTTTAAAAAATATATAGTGCTTTGA CATGAAATTTTGCTCTTTTTTGAGCCAAGAGGGTGTTTTTCTAAA Found at i:18719512 original size:10 final size:10 Alignment explanation
Indices: 18719485--18719521 Score: 39 Period size: 10 Copynumber: 3.7 Consensus size: 10 18719475 AACGTTTTTG * 18719485 AAAATTTGAT 1 AAAATTTAAT ** 18719495 AATGTTTAAT 1 AAAATTTAAT * 18719505 AAAATTTAAA 1 AAAATTTAAT * 18719515 AATATTT 1 AAAATTT 18719522 TTAGAACGTT Statistics Matches: 20, Mismatches: 7, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 10 20 1.00 ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43 Consensus pattern (10 bp): AAAATTTAAT Left flanking sequence: Indices 18718985 -- 18719484 AATTCGAAAAAATTGCAGAAAATTCAAGGATGTTCCTGAAAATCTTTAAAATATTCCAGAAAATT TCAGAAAATTTTAAAATGATCTAGAAAACTCTAGGACGTTCCTGAAAATTTCAGAAAATTCCGGA ACCTTACAAAAAATTTCAGAAAATTTCATCAAACTCTAAAAATACCAGAAAATTCTAGGAAAGCC TAAGAAGGTTTCAGAAAAATACGGATTTTTTTTGTAAAATTTAGCCATTTTTAAGAAATTTCTGA AGAGCCTAAAATGTTCCAAAAAATTCCAGAAAATCCCAAAAAAAATCAGAAAGTTTTAGAAAATT TGAGAAGGTTTAAAATATATTTAAAATATTTTTAGAACGTTTCAAAAAATTCAAAAAATGTTTTT GAATGCTGGAGTAGGTTTCAGAAAATTTTGAAGAATTTCAGAAAATCCCAGAAAGTCTCCAAAAA ATCCAGAAATTTCCAGAAATTTCAAAAAAAATCAGAACGTTTTTG Right flanking sequence: Indices 18719522 -- 18720021 TTAGAACGTTTCAAAAAATTCCAGAACATTTAAAAAAGTTCCAGGAAGTTCAATTTCAGAAAATG TTAGAAATTTTTTTGAAAGCTGGAGTATGTTTCAGAAAGTTTTGGAAATTTTCAGAAAATTCCAG AAAATTTCACAAAAAAATTTAAACATTTTTGAGAAATTTCAGAAAAGTCTAGAATGTTCCAAAAA ATTCCAGAAAATCCCAAAAAAAATTCAGGAATTTTTTAGAACATTCGAGAAGATCTAAAATATAT TTAAAAAATTTTTTAGAACATTTCAAAAAATTCAAAATATTTTACAAAATTTTTTGAATGCTGGA GTATGTTTCGGAAATTTTAGGGAAGTTTCAGAAAGTTCCAGAAATATTTTAAAAAATATATAGTG CTTTGACATGAAATTTTGCTCTTTTTTGAGCCAAGAGGGTGTTTTTCTAAATTTTCAAAAATACA TTTTCTAGTGAAACACATTGAAAAACTCACGTTTCGAATCGCTGC Found at