TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:18930493 original size:8 final size:8 Alignment explanation
Indices: 18930480--18930495 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18930470 AATCATATAC 18930480 CAATTTCA 1 CAATTTCA 18930488 CAATTTCA 1 CAATTTCA 18930496 TGTTCGAAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38 Consensus pattern (8 bp): CAATTTCA Left flanking sequence: Indices 18929980 -- 18930479 TCGGAATTGTACTAAAACTTGATTTTTAGGCATTTTTCAATCTAAACTTGAATTTTAAACAAAAT TTCCGTCAATTTGCCTATATTCGGTGAAATTGCATTATTGCCCATTTTTTGCCGGTTTATTGCCG GAAATATCGATTTTTCTTAATTTTGACTAAATATAGGCAATATGGGGGTGAAATTAACGGAAATT GCATAGTCTAATTGAAAATTTTATTTAAAATGGCAAAAAATTGAATTTTTCAAACAAAAAAAATT AGAAAACAATTTTTTCAATTTTACACAATTTTTTTTTTCCAAAAAAAAATTTCGAAAAAATTAAT TTCTCTCTAATTTCACCTACCTCAAAGAGCACACCATAAGAAACACTCCCAGAATGGCAAGAGCC ACACTGAGCCAAGGAGCCGTCGTAGTTCCAAGCCTCCGAACCTCCTCAGCCACCAAATTATCACT GGCCACCTGGCCATAAATCAGCGGATATTTGCCCGAATCATATAC Right flanking sequence: Indices 18930496 -- 18930995 TGTTCGAAATCTGTCATTGGCTTCAAATTGGGAAAAGTTAGGAAAAAACGGAGAATAACCGCTGA AAATGACTGAATTCGGTGGGTTTTTGGGTGGGTTTCCACGCCGTAGAGGTTGTTGGCAAGGAGGA TTTTGTGACCGAGTAGTTCGGTTGTTGGGTAAGTTATCTGTAATTATAATACTGAAAAATACAAA AAATGGCTTTAAAATCAATGTTTTATTGATTTTTGGAAGTTTTGAAAATTTTTTTAAATTTTCAA AAAAAAATTTTTTTGGGAATTTTTTTTTTTTTTCTCAAATAAATTTAATTTTCAAGTAGTTCAAA TGAATTTTCATGTCATTTTTCAATTTTCTCATTTAACTGTCGTCAATTTAACACCTATATTGCCT ATATTTGGCAGAATGCCATTTTTGCCCATTTCTTGCCGGAATTTAGGAACATCTCCAAATTTAGC TAAATAATGGCAAAATGGGTTCCAAAATTAAGGGAAAAGGCTTGA Found at i:18930733 original size:9 final size:9 Alignment explanation
Indices: 18930721--18930742 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 18930711 TTTTATTGAT * * 18930721 TTTTGGAAG 1 TTTTGAAAA 18930730 TTTTGAAAA 1 TTTTGAAAA 18930739 TTTT 1 TTTT 18930743 TTTAAATTTT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55 Consensus pattern (9 bp): TTTTGAAAA Left flanking sequence: Indices 18930221 -- 18930720 TTTTCAAACAAAAAAAATTAGAAAACAATTTTTTCAATTTTACACAATTTTTTTTTTCCAAAAAA AAATTTCGAAAAAATTAATTTCTCTCTAATTTCACCTACCTCAAAGAGCACACCATAAGAAACAC TCCCAGAATGGCAAGAGCCACACTGAGCCAAGGAGCCGTCGTAGTTCCAAGCCTCCGAACCTCCT CAGCCACCAAATTATCACTGGCCACCTGGCCATAAATCAGCGGATATTTGCCCGAATCATATACC AATTTCACAATTTCATGTTCGAAATCTGTCATTGGCTTCAAATTGGGAAAAGTTAGGAAAAAACG GAGAATAACCGCTGAAAATGACTGAATTCGGTGGGTTTTTGGGTGGGTTTCCACGCCGTAGAGGT TGTTGGCAAGGAGGATTTTGTGACCGAGTAGTTCGGTTGTTGGGTAAGTTATCTGTAATTATAAT ACTGAAAAATACAAAAAATGGCTTTAAAATCAATGTTTTATTGAT Right flanking sequence: Indices 18930743 -- 18931242 TTTAAATTTTCAAAAAAAAATTTTTTTGGGAATTTTTTTTTTTTTTCTCAAATAAATTTAATTTT CAAGTAGTTCAAATGAATTTTCATGTCATTTTTCAATTTTCTCATTTAACTGTCGTCAATTTAAC ACCTATATTGCCTATATTTGGCAGAATGCCATTTTTGCCCATTTCTTGCCGGAATTTAGGAACAT CTCCAAATTTAGCTAAATAATGGCAAAATGGGTTCCAAAATTAAGGGAAAAGGCTTGAAAAACTA AGAAATATTTTTAGAGTAGCATGAAAATCGATTTCCTATCGATTTTTGAAGTTTTGAAAATTTTT TAAAAACACTTTTCTCAAATAAATTTAATTTTCAAGTATTTTAAATGCATTTTTATGTCATTTTT CAAATTTTCCAAATACTTTGATCAAATTAACACCCATATTGCCAATATTTGGTAAAATATCATTT TTGCCCATTTCTTGCCGGAATTTAAGAACTTCTCCAGATTTAGCG Found at i:18930743 original size:10 final size:9 Alignment explanation
Indices: 18930719--18930752 Score: 29 Period size: 9 Copynumber: 3.6 Consensus size: 9 18930709 TGTTTTATTG * 18930719 ATTTTTGGA 1 ATTTTTGAA * 18930728 AGTTTTGAAA 1 ATTTTTG-AA * 18930738 ATTTTTTTAA 1 A-TTTTTGAA 18930748 ATTTT 1 ATTTT 18930753 CAAAAAAAAA Statistics Matches: 19, Mismatches: 4, Indels: 4 0.70 0.15 0.15 Matches are distributed among these distances: 9 10 0.53 10 5 0.26 11 4 0.21 ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59 Consensus pattern (9 bp): ATTTTTGAA Left flanking sequence: Indices 18930219 -- 18930718 ATTTTTCAAACAAAAAAAATTAGAAAACAATTTTTTCAATTTTACACAATTTTTTTTTTCCAAAA AAAAATTTCGAAAAAATTAATTTCTCTCTAATTTCACCTACCTCAAAGAGCACACCATAAGAAAC ACTCCCAGAATGGCAAGAGCCACACTGAGCCAAGGAGCCGTCGTAGTTCCAAGCCTCCGAACCTC CTCAGCCACCAAATTATCACTGGCCACCTGGCCATAAATCAGCGGATATTTGCCCGAATCATATA CCAATTTCACAATTTCATGTTCGAAATCTGTCATTGGCTTCAAATTGGGAAAAGTTAGGAAAAAA CGGAGAATAACCGCTGAAAATGACTGAATTCGGTGGGTTTTTGGGTGGGTTTCCACGCCGTAGAG GTTGTTGGCAAGGAGGATTTTGTGACCGAGTAGTTCGGTTGTTGGGTAAGTTATCTGTAATTATA ATACTGAAAAATACAAAAAATGGCTTTAAAATCAATGTTTTATTG Right flanking sequence: Indices 18930753 -- 18931252 CAAAAAAAAATTTTTTTGGGAATTTTTTTTTTTTTTCTCAAATAAATTTAATTTTCAAGTAGTTC AAATGAATTTTCATGTCATTTTTCAATTTTCTCATTTAACTGTCGTCAATTTAACACCTATATTG CCTATATTTGGCAGAATGCCATTTTTGCCCATTTCTTGCCGGAATTTAGGAACATCTCCAAATTT AGCTAAATAATGGCAAAATGGGTTCCAAAATTAAGGGAAAAGGCTTGAAAAACTAAGAAATATTT TTAGAGTAGCATGAAAATCGATTTCCTATCGATTTTTGAAGTTTTGAAAATTTTTTAAAAACACT TTTCTCAAATAAATTTAATTTTCAAGTATTTTAAATGCATTTTTATGTCATTTTTCAAATTTTCC AAATACTTTGATCAAATTAACACCCATATTGCCAATATTTGGTAAAATATCATTTTTGCCCATTT CTTGCCGGAATTTAAGAACTTCTCCAGATTTAGCGAAATAATGGC Found at i:18930854 original size:8 final size:7 Alignment explanation
Indices: 18930833--18930854 Score: 26 Period size: 8 Copynumber: 2.9 Consensus size: 7 18930823 AATTTTCATG 18930833 TCATTTT 1 TCATTTT 18930840 TCAATTTT 1 TC-ATTTT 18930848 CTCATTT 1 -TCATTT 18930855 AACTGTCGTC Statistics Matches: 13, Mismatches: 0, Indels: 3 0.81 0.00 0.19 Matches are distributed among these distances: 7 2 0.15 8 9 0.69 9 2 0.15 ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64 Consensus pattern (7 bp): TCATTTT Left flanking sequence: Indices 18930333 -- 18930832 GCACACCATAAGAAACACTCCCAGAATGGCAAGAGCCACACTGAGCCAAGGAGCCGTCGTAGTTC CAAGCCTCCGAACCTCCTCAGCCACCAAATTATCACTGGCCACCTGGCCATAAATCAGCGGATAT TTGCCCGAATCATATACCAATTTCACAATTTCATGTTCGAAATCTGTCATTGGCTTCAAATTGGG AAAAGTTAGGAAAAAACGGAGAATAACCGCTGAAAATGACTGAATTCGGTGGGTTTTTGGGTGGG TTTCCACGCCGTAGAGGTTGTTGGCAAGGAGGATTTTGTGACCGAGTAGTTCGGTTGTTGGGTAA GTTATCTGTAATTATAATACTGAAAAATACAAAAAATGGCTTTAAAATCAATGTTTTATTGATTT TTGGAAGTTTTGAAAATTTTTTTAAATTTTCAAAAAAAAATTTTTTTGGGAATTTTTTTTTTTTT TCTCAAATAAATTTAATTTTCAAGTAGTTCAAATGAATTTTCATG Right flanking sequence: Indices 18930855 -- 18931354 AACTGTCGTCAATTTAACACCTATATTGCCTATATTTGGCAGAATGCCATTTTTGCCCATTTCTT GCCGGAATTTAGGAACATCTCCAAATTTAGCTAAATAATGGCAAAATGGGTTCCAAAATTAAGGG AAAAGGCTTGAAAAACTAAGAAATATTTTTAGAGTAGCATGAAAATCGATTTCCTATCGATTTTT GAAGTTTTGAAAATTTTTTAAAAACACTTTTCTCAAATAAATTTAATTTTCAAGTATTTTAAATG CATTTTTATGTCATTTTTCAAATTTTCCAAATACTTTGATCAAATTAACACCCATATTGCCAATA TTTGGTAAAATATCATTTTTGCCCATTTCTTGCCGGAATTTAAGAACTTCTCCAGATTTAGCGAA ATAATGGCAATATGGATGTAAAATTAACGGGAAAATAATTGAAGAATCATTTAATATGGTTAGAC TATCGCGAAAATCGATTTCATATCGATTTTTGAAGTTTTGAAAAT Found at i:18931066 original size:9 final size:8 Alignment explanation
Indices: 18931046--18931065 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 18931036 TCCTATCGAT * 18931046 TTTTGAAG 1 TTTTGAAA 18931054 TTTTGAAA 1 TTTTGAAA * 18931062 ATTT 1 TTTT 18931066 TTTAAAAACA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55 Consensus pattern (8 bp): TTTTGAAA Left flanking sequence: Indices 18930546 -- 18931045 GAGAATAACCGCTGAAAATGACTGAATTCGGTGGGTTTTTGGGTGGGTTTCCACGCCGTAGAGGT TGTTGGCAAGGAGGATTTTGTGACCGAGTAGTTCGGTTGTTGGGTAAGTTATCTGTAATTATAAT ACTGAAAAATACAAAAAATGGCTTTAAAATCAATGTTTTATTGATTTTTGGAAGTTTTGAAAATT TTTTTAAATTTTCAAAAAAAAATTTTTTTGGGAATTTTTTTTTTTTTTCTCAAATAAATTTAATT TTCAAGTAGTTCAAATGAATTTTCATGTCATTTTTCAATTTTCTCATTTAACTGTCGTCAATTTA ACACCTATATTGCCTATATTTGGCAGAATGCCATTTTTGCCCATTTCTTGCCGGAATTTAGGAAC ATCTCCAAATTTAGCTAAATAATGGCAAAATGGGTTCCAAAATTAAGGGAAAAGGCTTGAAAAAC TAAGAAATATTTTTAGAGTAGCATGAAAATCGATTTCCTATCGAT Right flanking sequence: Indices 18931066 -- 18931565 TTTAAAAACACTTTTCTCAAATAAATTTAATTTTCAAGTATTTTAAATGCATTTTTATGTCATTT TTCAAATTTTCCAAATACTTTGATCAAATTAACACCCATATTGCCAATATTTGGTAAAATATCAT TTTTGCCCATTTCTTGCCGGAATTTAAGAACTTCTCCAGATTTAGCGAAATAATGGCAATATGGA TGTAAAATTAACGGGAAAATAATTGAAGAATCATTTAATATGGTTAGACTATCGCGAAAATCGAT TTCATATCGATTTTTGAAGTTTTGAAAATTTTTAAAAATTTTCACAATTTTCAAAAAAAAATGTT TGCCGAAAATTTAATTTTCACATTTTTTCAAAAACTCTCTCTGTTTTTAGTTATTCTATCTCATT TTTCACAGTTTTTATACAATTTCTGTCAATCTGGCACCCTTTTTGCCCATATTTTACAAAACTTC TGTAATTAGCTGAAAATTCCCGCAAAATTCGGGCAAAAATGACAT Found at i:18931145 original size:9 final size:9 Alignment explanation
Indices: 18931127--18931146 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 18931117 TTTTTATGTC * 18931127 ATTTTTCAA 1 ATTTTCCAA 18931136 ATTTTCCAA 1 ATTTTCCAA 18931145 AT 1 AT 18931147 ACTTTGATCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50 Consensus pattern (9 bp): ATTTTCCAA Left flanking sequence: Indices 18930627 -- 18931126 TTTGTGACCGAGTAGTTCGGTTGTTGGGTAAGTTATCTGTAATTATAATACTGAAAAATACAAAA AATGGCTTTAAAATCAATGTTTTATTGATTTTTGGAAGTTTTGAAAATTTTTTTAAATTTTCAAA AAAAAATTTTTTTGGGAATTTTTTTTTTTTTTCTCAAATAAATTTAATTTTCAAGTAGTTCAAAT GAATTTTCATGTCATTTTTCAATTTTCTCATTTAACTGTCGTCAATTTAACACCTATATTGCCTA TATTTGGCAGAATGCCATTTTTGCCCATTTCTTGCCGGAATTTAGGAACATCTCCAAATTTAGCT AAATAATGGCAAAATGGGTTCCAAAATTAAGGGAAAAGGCTTGAAAAACTAAGAAATATTTTTAG AGTAGCATGAAAATCGATTTCCTATCGATTTTTGAAGTTTTGAAAATTTTTTAAAAACACTTTTC TCAAATAAATTTAATTTTCAAGTATTTTAAATGCATTTTTATGTC Right flanking sequence: Indices 18931147 -- 18931646 ACTTTGATCAAATTAACACCCATATTGCCAATATTTGGTAAAATATCATTTTTGCCCATTTCTTG CCGGAATTTAAGAACTTCTCCAGATTTAGCGAAATAATGGCAATATGGATGTAAAATTAACGGGA AAATAATTGAAGAATCATTTAATATGGTTAGACTATCGCGAAAATCGATTTCATATCGATTTTTG AAGTTTTGAAAATTTTTAAAAATTTTCACAATTTTCAAAAAAAAATGTTTGCCGAAAATTTAATT TTCACATTTTTTCAAAAACTCTCTCTGTTTTTAGTTATTCTATCTCATTTTTCACAGTTTTTATA CAATTTCTGTCAATCTGGCACCCTTTTTGCCCATATTTTACAAAACTTCTGTAATTAGCTGAAAA TTCCCGCAAAATTCGGGCAAAAATGACATATCACCAATATGGGTGTTAAACAAACCGGAATTGTG TGGAAAATATAAATAACTACACAAAACATAGTAAAAACGTATAGT Found at i:18931357 original size:9 final size:9 Alignment explanation
Indices: 18931345--18931381 Score: 44 Period size: 9 Copynumber: 4.0 Consensus size: 9 18931335 ATTTTTGAAG * 18931345 TTTTGAAAA 1 TTTTCAAAA * 18931354 TTTTTAAAAA 1 -TTTTCAAAA * 18931364 TTTTCACAA 1 TTTTCAAAA 18931373 TTTTCAAAA 1 TTTTCAAAA 18931382 AAAAATGTTT Statistics Matches: 23, Mismatches: 4, Indels: 1 0.82 0.14 0.04 Matches are distributed among these distances: 9 15 0.65 10 8 0.35 ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46 Consensus pattern (9 bp): TTTTCAAAA Left flanking sequence: Indices 18930845 -- 18931344 TTTCTCATTTAACTGTCGTCAATTTAACACCTATATTGCCTATATTTGGCAGAATGCCATTTTTG CCCATTTCTTGCCGGAATTTAGGAACATCTCCAAATTTAGCTAAATAATGGCAAAATGGGTTCCA AAATTAAGGGAAAAGGCTTGAAAAACTAAGAAATATTTTTAGAGTAGCATGAAAATCGATTTCCT ATCGATTTTTGAAGTTTTGAAAATTTTTTAAAAACACTTTTCTCAAATAAATTTAATTTTCAAGT ATTTTAAATGCATTTTTATGTCATTTTTCAAATTTTCCAAATACTTTGATCAAATTAACACCCAT ATTGCCAATATTTGGTAAAATATCATTTTTGCCCATTTCTTGCCGGAATTTAAGAACTTCTCCAG ATTTAGCGAAATAATGGCAATATGGATGTAAAATTAACGGGAAAATAATTGAAGAATCATTTAAT ATGGTTAGACTATCGCGAAAATCGATTTCATATCGATTTTTGAAG Right flanking sequence: Indices 18931382 -- 18931881 AAAAATGTTTGCCGAAAATTTAATTTTCACATTTTTTCAAAAACTCTCTCTGTTTTTAGTTATTC TATCTCATTTTTCACAGTTTTTATACAATTTCTGTCAATCTGGCACCCTTTTTGCCCATATTTTA CAAAACTTCTGTAATTAGCTGAAAATTCCCGCAAAATTCGGGCAAAAATGACATATCACCAATAT GGGTGTTAAACAAACCGGAATTGTGTGGAAAATATAAATAACTACACAAAACATAGTAAAAACGT ATAGTTTGTTGAATTTTGAGGTTTGAACATTTTTTAAATTTTTCACAAAAAAAAACAATTTTTTG CCTAAATTTTTGGAATTTTTTTCAAAATTTTTTTTTCGAAAATTTTTAAATTACGAATTTAAATT CACCTTTTTATGTGTTTTAACTAATTTTTCACATTAAAAAACCATCTAAACCCCGCCCAATCACC TCAAAAGAGTCCGTCGAATTCGACTCAAAAATGTCCATTAGCGCA Found at i:18931363 original size:10 final size:10 Alignment explanation
Indices: 18931345--18931382 Score: 41 Period size: 10 Copynumber: 3.9 Consensus size: 10 18931335 ATTTTTGAAG * 18931345 TTTTGAAAAT 1 TTTTAAAAAT 18931355 TTTTAAAAA- 1 TTTTAAAAAT * * 18931364 TTTTCACAAT 1 TTTTAAAAAT * 18931374 TTTCAAAAA 1 TTTTAAAAA 18931383 AAAATGTTTG Statistics Matches: 21, Mismatches: 6, Indels: 2 0.72 0.21 0.07 Matches are distributed among these distances: 9 7 0.33 10 14 0.67 ACGTcount: A:0.45, C:0.08, G:0.03, T:0.45 Consensus pattern (10 bp): TTTTAAAAAT Left flanking sequence: Indices 18930845 -- 18931344 TTTCTCATTTAACTGTCGTCAATTTAACACCTATATTGCCTATATTTGGCAGAATGCCATTTTTG CCCATTTCTTGCCGGAATTTAGGAACATCTCCAAATTTAGCTAAATAATGGCAAAATGGGTTCCA AAATTAAGGGAAAAGGCTTGAAAAACTAAGAAATATTTTTAGAGTAGCATGAAAATCGATTTCCT ATCGATTTTTGAAGTTTTGAAAATTTTTTAAAAACACTTTTCTCAAATAAATTTAATTTTCAAGT ATTTTAAATGCATTTTTATGTCATTTTTCAAATTTTCCAAATACTTTGATCAAATTAACACCCAT ATTGCCAATATTTGGTAAAATATCATTTTTGCCCATTTCTTGCCGGAATTTAAGAACTTCTCCAG ATTTAGCGAAATAATGGCAATATGGATGTAAAATTAACGGGAAAATAATTGAAGAATCATTTAAT ATGGTTAGACTATCGCGAAAATCGATTTCATATCGATTTTTGAAG Right flanking sequence: Indices 18931383 -- 18931882 AAAATGTTTGCCGAAAATTTAATTTTCACATTTTTTCAAAAACTCTCTCTGTTTTTAGTTATTCT ATCTCATTTTTCACAGTTTTTATACAATTTCTGTCAATCTGGCACCCTTTTTGCCCATATTTTAC AAAACTTCTGTAATTAGCTGAAAATTCCCGCAAAATTCGGGCAAAAATGACATATCACCAATATG GGTGTTAAACAAACCGGAATTGTGTGGAAAATATAAATAACTACACAAAACATAGTAAAAACGTA TAGTTTGTTGAATTTTGAGGTTTGAACATTTTTTAAATTTTTCACAAAAAAAAACAATTTTTTGC CTAAATTTTTGGAATTTTTTTCAAAATTTTTTTTTCGAAAATTTTTAAATTACGAATTTAAATTC ACCTTTTTATGTGTTTTAACTAATTTTTCACATTAAAAAACCATCTAAACCCCGCCCAATCACCT CAAAAGAGTCCGTCGAATTCGACTCAAAAATGTCCATTAGCGCAA Found at i:18932067 original size:8 final size:8 Alignment explanation
Indices: 18932054--18932070 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 18932044 AACATTACCT 18932054 GAAATTTG 1 GAAATTTG 18932062 GAAATTTG 1 GAAATTTG 18932070 G 1 G 18932071 TGAAAATTGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35 Consensus pattern (8 bp): GAAATTTG Left flanking sequence: Indices 18931554 -- 18932053 CAAAAATGACATATCACCAATATGGGTGTTAAACAAACCGGAATTGTGTGGAAAATATAAATAAC TACACAAAACATAGTAAAAACGTATAGTTTGTTGAATTTTGAGGTTTGAACATTTTTTAAATTTT TCACAAAAAAAAACAATTTTTTGCCTAAATTTTTGGAATTTTTTTCAAAATTTTTTTTTCGAAAA TTTTTAAATTACGAATTTAAATTCACCTTTTTATGTGTTTTAACTAATTTTTCACATTAAAAAAC CATCTAAACCCCGCCCAATCACCTCAAAAGAGTCCGTCGAATTCGACTCAAAAATGTCCATTAGC GCAAAAAATGCGTCATTTTTTTCGCAATATGGTTCACACATGTCTCCATATGTTTTATTCACTCC ATTTACATCAACTTGTAGTTTTTCCACAATTTCCTTAGATATTTCGTATAATTCATGCCGGTAAG GGGGTCTGAGGAGACTTCCGTTGTCCGAAGCTTGGAACATTACCT Right flanking sequence: Indices 18932071 -- 18932570 TGAAAATTGGTGTGTTCAGAAAGAAAACGTGATATTTTAATTTGCTTAGTTGTTAAAATTCTGAA AAATTGGTGAAAAACCGCTGAAAATCCCCTGAAAAACAAGCTCATGGATATTTTTGAAAACAGTT ATCATTGGAGCGCATTTAATCTTGTTAAGAATGGATTATTTTGAAAACTGGTAACTAACAGATTG TAGAATACATATTTTTTTAACTAATATGTTTTGCAAAATTTTAATACATCAAAAATGTATTGAGA TACTAAAATTTTAAGTTTGGAAGTCAAAATTCAAATTTTGAAGATTTTGTCATTAGAGCGCATTT ACTACCTTCGAGATTAGTTTGACCAAATAGTTTGATATACAGTATATTTAGAAAAAATATTGCGC TAGCTAATGTGTTTTACAAAATTCAAAAATCTCATAAATTAGCTCAGTTACAGTAGTTTCAAATA CTATCAAATTTTTGAAAAATTCAAAAAAAAATTTTACCATAATTT Found at i:18932080 original size:10 final size:10 Alignment explanation
Indices: 18932062--18932082 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 18932052 CTGAAATTTG * 18932062 GAAATTTGGT 1 GAAAATTGGT 18932072 GAAAATTGGT 1 GAAAATTGGT 18932082 G 1 G 18932083 TGTTCAGAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33 Consensus pattern (10 bp): GAAAATTGGT Left flanking sequence: Indices 18931562 -- 18932061 ACATATCACCAATATGGGTGTTAAACAAACCGGAATTGTGTGGAAAATATAAATAACTACACAAA ACATAGTAAAAACGTATAGTTTGTTGAATTTTGAGGTTTGAACATTTTTTAAATTTTTCACAAAA AAAAACAATTTTTTGCCTAAATTTTTGGAATTTTTTTCAAAATTTTTTTTTCGAAAATTTTTAAA TTACGAATTTAAATTCACCTTTTTATGTGTTTTAACTAATTTTTCACATTAAAAAACCATCTAAA CCCCGCCCAATCACCTCAAAAGAGTCCGTCGAATTCGACTCAAAAATGTCCATTAGCGCAAAAAA TGCGTCATTTTTTTCGCAATATGGTTCACACATGTCTCCATATGTTTTATTCACTCCATTTACAT CAACTTGTAGTTTTTCCACAATTTCCTTAGATATTTCGTATAATTCATGCCGGTAAGGGGGTCTG AGGAGACTTCCGTTGTCCGAAGCTTGGAACATTACCTGAAATTTG Right flanking sequence: Indices 18932083 -- 18932582 TGTTCAGAAAGAAAACGTGATATTTTAATTTGCTTAGTTGTTAAAATTCTGAAAAATTGGTGAAA AACCGCTGAAAATCCCCTGAAAAACAAGCTCATGGATATTTTTGAAAACAGTTATCATTGGAGCG CATTTAATCTTGTTAAGAATGGATTATTTTGAAAACTGGTAACTAACAGATTGTAGAATACATAT TTTTTTAACTAATATGTTTTGCAAAATTTTAATACATCAAAAATGTATTGAGATACTAAAATTTT AAGTTTGGAAGTCAAAATTCAAATTTTGAAGATTTTGTCATTAGAGCGCATTTACTACCTTCGAG ATTAGTTTGACCAAATAGTTTGATATACAGTATATTTAGAAAAAATATTGCGCTAGCTAATGTGT TTTACAAAATTCAAAAATCTCATAAATTAGCTCAGTTACAGTAGTTTCAAATACTATCAAATTTT TGAAAAATTCAAAAAAAAATTTTACCATAATTTTTAAAATATCGT Found at i:18932960 original size:9 final size:9 Alignment explanation
Indices: 18932946--18932978 Score: 36 Period size: 9 Copynumber: 3.6 Consensus size: 9 18932936 CGTATCTCGT 18932946 AAATTTTTA 1 AAATTTTTA 18932955 AAATTTTTGA 1 AAATTTTT-A ** * 18932965 GTATTTTTG 1 AAATTTTTA 18932974 AAATT 1 AAATT 18932979 ATGACGTAGA Statistics Matches: 18, Mismatches: 5, Indels: 2 0.72 0.20 0.08 Matches are distributed among these distances: 9 11 0.61 10 7 0.39 ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55 Consensus pattern (9 bp): AAATTTTTA Left flanking sequence: Indices 18932446 -- 18932945 GAAAAAATATTGCGCTAGCTAATGTGTTTTACAAAATTCAAAAATCTCATAAATTAGCTCAGTTA CAGTAGTTTCAAATACTATCAAATTTTTGAAAAATTCAAAAAAAAATTTTACCATAATTTTTAAA ATATCGTATCTCGGTCAATTTTTGAAATTTTTAAGTATTTTTAAATAAATGTTGTAGATAAGTAT TTGTTCTAAAATTTGTCTGTTGGCAACTTTTTTGTCCCGCAAATTCTAAATGTAGTAAATGCGCT CCAATGGCAATTTTTCAGAAATTTCCAAAAATTTATCTTTGACTTCGAATTTTTAAACTACCGTA TCTTTGCTAATTTTTAATATTTTTGTATATGCTAAAATGTATTTTTTAGGTAATTATTTGTTCCA AAAGTTGTTAGTTAACACTTTTTTGTCTCGCAATTTCGAAATGTAGTAAATGCGTTCCTTTTTTG AAAATTTGAAACTTACCTTCAAACTTTGAAACTACCGTATCTCGT Right flanking sequence: Indices 18932979 -- 18933478 ATGACGTAGACAAATATTTGCTCTAAAATTTGTTAGTTGATAACTTTGTGATCCAACAGTTTCCA AATGTAGTAAACGCGCTCCAATTATAATTTTTCAAAATGTCAAAAATTGTATTTTTCAAAAAAAT TTCCAAAATTTAAAACTTCCGTATCTCTGCTAATTTTTGATATTTTTGGTTATACTAAAATTTAC TTTTTAGGAAATTATTTTTTCTAAACTTAGTAAATGTGCTCTAATGAGAATTTATTGCAAAATTC ACATTTTCACACAGCAAACCTATCCCAAAACGTTCATTTTCTTTATATTATTTTTTCGAAAATTT TTAATAAAGTACATTGACCCTAATATACATTTAATGAAGTACATTCACAGCAAATTTATCATTTT TCTGTCACCCCGTTACGATGCTATCAATCACCTAGCCCCTGGTCACCTAAAAACTTGTTTTTCTT TGTGATTTTTTGTAATTTTGTGTGATTCTCTAGTTTGTAGTCTAT Found at i:18932961 original size:8 final size:8 Alignment explanation
Indices: 18932945--18932961 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 18932935 CCGTATCTCG * 18932945 TAAATTTT 1 TAAAATTT 18932953 TAAAATTT 1 TAAAATTT 18932961 T 1 T 18932962 TGAGTATTTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (8 bp): TAAAATTT Left flanking sequence: Indices 18932445 -- 18932944 AGAAAAAATATTGCGCTAGCTAATGTGTTTTACAAAATTCAAAAATCTCATAAATTAGCTCAGTT ACAGTAGTTTCAAATACTATCAAATTTTTGAAAAATTCAAAAAAAAATTTTACCATAATTTTTAA AATATCGTATCTCGGTCAATTTTTGAAATTTTTAAGTATTTTTAAATAAATGTTGTAGATAAGTA TTTGTTCTAAAATTTGTCTGTTGGCAACTTTTTTGTCCCGCAAATTCTAAATGTAGTAAATGCGC TCCAATGGCAATTTTTCAGAAATTTCCAAAAATTTATCTTTGACTTCGAATTTTTAAACTACCGT ATCTTTGCTAATTTTTAATATTTTTGTATATGCTAAAATGTATTTTTTAGGTAATTATTTGTTCC AAAAGTTGTTAGTTAACACTTTTTTGTCTCGCAATTTCGAAATGTAGTAAATGCGTTCCTTTTTT GAAAATTTGAAACTTACCTTCAAACTTTGAAACTACCGTATCTCG Right flanking sequence: Indices 18932962 -- 18933461 TGAGTATTTTTGAAATTATGACGTAGACAAATATTTGCTCTAAAATTTGTTAGTTGATAACTTTG TGATCCAACAGTTTCCAAATGTAGTAAACGCGCTCCAATTATAATTTTTCAAAATGTCAAAAATT GTATTTTTCAAAAAAATTTCCAAAATTTAAAACTTCCGTATCTCTGCTAATTTTTGATATTTTTG GTTATACTAAAATTTACTTTTTAGGAAATTATTTTTTCTAAACTTAGTAAATGTGCTCTAATGAG AATTTATTGCAAAATTCACATTTTCACACAGCAAACCTATCCCAAAACGTTCATTTTCTTTATAT TATTTTTTCGAAAATTTTTAATAAAGTACATTGACCCTAATATACATTTAATGAAGTACATTCAC AGCAAATTTATCATTTTTCTGTCACCCCGTTACGATGCTATCAATCACCTAGCCCCTGGTCACCT AAAAACTTGTTTTTCTTTGTGATTTTTTGTAATTTTGTGTGATTC Found at i:18933445 original size:10 final size:10 Alignment explanation
Indices: 18933432--18933460 Score: 44 Period size: 10 Copynumber: 2.9 Consensus size: 10 18933422 CTTGTTTTTC 18933432 TTTGTGATTT 1 TTTGTGATTT * 18933442 TTTGTAATTT 1 TTTGTGATTT * 18933452 TGTGTGATT 1 TTTGTGATT 18933461 CTCTAGTTTG Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 10 16 1.00 ACGTcount: A:0.14, C:0.00, G:0.21, T:0.66 Consensus pattern (10 bp): TTTGTGATTT Left flanking sequence: Indices 18932932 -- 18933431 CTACCGTATCTCGTAAATTTTTAAAATTTTTGAGTATTTTTGAAATTATGACGTAGACAAATATT TGCTCTAAAATTTGTTAGTTGATAACTTTGTGATCCAACAGTTTCCAAATGTAGTAAACGCGCTC CAATTATAATTTTTCAAAATGTCAAAAATTGTATTTTTCAAAAAAATTTCCAAAATTTAAAACTT CCGTATCTCTGCTAATTTTTGATATTTTTGGTTATACTAAAATTTACTTTTTAGGAAATTATTTT TTCTAAACTTAGTAAATGTGCTCTAATGAGAATTTATTGCAAAATTCACATTTTCACACAGCAAA CCTATCCCAAAACGTTCATTTTCTTTATATTATTTTTTCGAAAATTTTTAATAAAGTACATTGAC CCTAATATACATTTAATGAAGTACATTCACAGCAAATTTATCATTTTTCTGTCACCCCGTTACGA TGCTATCAATCACCTAGCCCCTGGTCACCTAAAAACTTGTTTTTC Right flanking sequence: Indices 18933461 -- 18933960 CTCTAGTTTGTAGTCTATGTAGTTTTTGTAGCCGATACCTCAATCATGTGAAGTGTCCCATTTTG GCGGAGAAATTCGAAAAACATGGCGCCCTCCAAGTGACTGGGCGAGTCATGAGCGGTAAATGTCA CGCGGGCGTTGTTTATCTGAAATTTCGGCGGTTTTTGGACCAAAAATAGGTGATATAGTGATGTC ATGCATTTTTGGTAGTATTAGAAAAAATTTGGAAATATTTGAAAAAAAAAAATTTTGTTTGGGAA TTTTTTTTTTGAAAAATTTTTTTGGAAATTTATTTTAAAACTTCTTCCAAACTCTAAAAAATCAA TAAAACCAACCTGATGAAACCTCAAAAAACCCAAACACGACACCAAAGTGACCAGTAACAGCACT CCAATGCACTTCCTCGGGTGCGTTCCAACGAAATATCCCACTTTGTAGAAGAACTTTTGCATATG GACCTCATATTTGGCGGTGGGCAACCGCATTCTTTAACTGAAATT Found at i:18933483 original size:9 final size:9 Alignment explanation
Indices: 18933469--18933491 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 18933459 TTCTCTAGTT 18933469 TGTAGTCTA 1 TGTAGTCTA * * 18933478 TGTAGTTTT 1 TGTAGTCTA 18933487 TGTAG 1 TGTAG 18933492 CCGATACCTC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.17, C:0.04, G:0.26, T:0.52 Consensus pattern (9 bp): TGTAGTCTA Left flanking sequence: Indices 18932969 -- 18933468 TTTTGAAATTATGACGTAGACAAATATTTGCTCTAAAATTTGTTAGTTGATAACTTTGTGATCCA ACAGTTTCCAAATGTAGTAAACGCGCTCCAATTATAATTTTTCAAAATGTCAAAAATTGTATTTT TCAAAAAAATTTCCAAAATTTAAAACTTCCGTATCTCTGCTAATTTTTGATATTTTTGGTTATAC TAAAATTTACTTTTTAGGAAATTATTTTTTCTAAACTTAGTAAATGTGCTCTAATGAGAATTTAT TGCAAAATTCACATTTTCACACAGCAAACCTATCCCAAAACGTTCATTTTCTTTATATTATTTTT TCGAAAATTTTTAATAAAGTACATTGACCCTAATATACATTTAATGAAGTACATTCACAGCAAAT TTATCATTTTTCTGTCACCCCGTTACGATGCTATCAATCACCTAGCCCCTGGTCACCTAAAAACT TGTTTTTCTTTGTGATTTTTTGTAATTTTGTGTGATTCTCTAGTT Right flanking sequence: Indices 18933492 -- 18933991 CCGATACCTCAATCATGTGAAGTGTCCCATTTTGGCGGAGAAATTCGAAAAACATGGCGCCCTCC AAGTGACTGGGCGAGTCATGAGCGGTAAATGTCACGCGGGCGTTGTTTATCTGAAATTTCGGCGG TTTTTGGACCAAAAATAGGTGATATAGTGATGTCATGCATTTTTGGTAGTATTAGAAAAAATTTG GAAATATTTGAAAAAAAAAAATTTTGTTTGGGAATTTTTTTTTTGAAAAATTTTTTTGGAAATTT ATTTTAAAACTTCTTCCAAACTCTAAAAAATCAATAAAACCAACCTGATGAAACCTCAAAAAACC CAAACACGACACCAAAGTGACCAGTAACAGCACTCCAATGCACTTCCTCGGGTGCGTTCCAACGA AATATCCCACTTTGTAGAAGAACTTTTGCATATGGACCTCATATTTGGCGGTGGGCAACCGCATT CTTTAACTGAAATTTTTAAAAAAGTTGAGTGGGAATGATATGTAA Found at i:18933815 original size:10 final size:9 Alignment explanation
Indices: 18933802--18933820 Score: 29 Period size: 10 Copynumber: 2.0 Consensus size: 9 18933792 CAACCTGATG 18933802 AAACCTCAAA 1 AAACC-CAAA 18933812 AAACCCAAA 1 AAACCCAAA 18933821 CACGACACCA Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 9 4 0.44 10 5 0.56 ACGTcount: A:0.63, C:0.32, G:0.00, T:0.05 Consensus pattern (9 bp): AAACCCAAA Left flanking sequence: Indices 18933302 -- 18933801 TTTTAATAAAGTACATTGACCCTAATATACATTTAATGAAGTACATTCACAGCAAATTTATCATT TTTCTGTCACCCCGTTACGATGCTATCAATCACCTAGCCCCTGGTCACCTAAAAACTTGTTTTTC TTTGTGATTTTTTGTAATTTTGTGTGATTCTCTAGTTTGTAGTCTATGTAGTTTTTGTAGCCGAT ACCTCAATCATGTGAAGTGTCCCATTTTGGCGGAGAAATTCGAAAAACATGGCGCCCTCCAAGTG ACTGGGCGAGTCATGAGCGGTAAATGTCACGCGGGCGTTGTTTATCTGAAATTTCGGCGGTTTTT GGACCAAAAATAGGTGATATAGTGATGTCATGCATTTTTGGTAGTATTAGAAAAAATTTGGAAAT ATTTGAAAAAAAAAAATTTTGTTTGGGAATTTTTTTTTTGAAAAATTTTTTTGGAAATTTATTTT AAAACTTCTTCCAAACTCTAAAAAATCAATAAAACCAACCTGATG Right flanking sequence: Indices 18933821 -- 18934320 CACGACACCAAAGTGACCAGTAACAGCACTCCAATGCACTTCCTCGGGTGCGTTCCAACGAAATA TCCCACTTTGTAGAAGAACTTTTGCATATGGACCTCATATTTGGCGGTGGGCAACCGCATTCTTT AACTGAAATTTTTAAAAAAGTTGAGTGGGAATGATATGTAAAACGTATTTAGAAAAAGAAGAGCG AAGAAAAAATAATTTCAAAAAATGTTTTTTTCAAAATTTTTATAAGCATTTTTTAACTCAAAAAC TACTAATTTTCAGACAATTTTACTACAAATATTGAATTCAGGACCATTTTTTACCCCTATATAGA CACTTTCCGCAAAATTTTAGAAAATTGTGCATTTTGTCGGGGGATTTGGTGACAGGTGGTGTTTG CGTACTTTCGGAGCTACCGTAACCCGCCATTTACAAAATTGAGTTAGAGGCTTGTAAAAAAAAAT TTTAGGGGTAAAAATGGGTGAGAAATATGAATTTCATATAGTTTT Found at i:18936538 original size:7 final size:7 Alignment explanation
Indices: 18936526--18936539 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18936516 TTCACAATTA 18936526 TTGCGTT 1 TTGCGTT 18936533 TTGCGTT 1 TTGCGTT 18936540 AAAAAATCAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.29, T:0.57 Consensus pattern (7 bp): TTGCGTT Left flanking sequence: Indices 18936026 -- 18936525 GAAGAAGTTGAAAATCAGACGGAGAAGGATAGAGAGATTGTGATGAATCGGGAGAGGTACAGATT TCAATAATTTAATGCTTCTAATTTGATATATTTTCAGAAATCTGAAGCGTGCCAACGAGGAATGG GGAACAACTGAAGCCTCGAAGCGTCCAAGATATGAGGATAGTCGTGGTGTTTTCCGAGGTGGATT CAGAGGAAGAAGAGAAGATCGTGGTGGCTTCCGTTGAAGTGACGACCGAGTAGGATTCAGAGGAC GTGACGGAGGTGGTGGCTTCCGTGGTGGGCAAGGTGGAGATTGAGGCGGTTTCCGTGGTCGTCGT CAATTCTAATATCAGTTGTTGTTTTGCAATTTATTGGTTTTCTGCGTTCTCCATTTTTATTATTA TGTTCGTTTTTGTTATTGTTATAATCATGAATATATCAGACTGTTTAACCCGAATTCAGAACTAG GAATCTAGCAGAAAATCGCAGGAAAAATTTGGGACTTCACAATTA Right flanking sequence: Indices 18936540 -- 18937039 AAAAAATCACATTTGCACGTAAATTGTGACGCTTGCAGTTTGGCGGCACGGCTCTATATTATTCA TTCATTTTATCAACAATTCGCACTTCTATCGCCCTAACGTCGATCAAAAAAGCTCATCAGCAACT GCCGTCGAGTGAAATGCGATAGAATTTGTCTGTGAATAACCAAATATCGATTTTCCTTGTATATC GTGAAGAACAAATCTTCATATTTACGATTCTTCACAAATTCGATGAAAATCTGATAGTTTTTTCA ATTTCAGCTCTATAATTCCAAAAAAAATCTTTTGTCAATTTCGCGAAATGTCGTCAATTAAAATG CGCGCTGTGCAGTACGCAACGGTGTACAAAACTTTAAACTGAGTATTCAACGTTGAGCACGCAGT CAGCCAAATTGGAATACGGTAGAGAATTCTCGTCTATGTACCCCCCGCCGGGCCGTGACAGTACT TCGCGATTTACAAAAGTTGAGTTAGACATTCGGGAAAAACGTGGC Found at i:18937138 original size:9 final size:9 Alignment explanation
Indices: 18937126--18937143 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 18937116 AAAGAATAAA * 18937126 AAAAATATG 1 AAAAAAATG 18937135 AAAAAAATG 1 AAAAAAATG 18937144 TTAACAAAAA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17 Consensus pattern (9 bp): AAAAAAATG Left flanking sequence: Indices 18936626 -- 18937125 ACTTCTATCGCCCTAACGTCGATCAAAAAAGCTCATCAGCAACTGCCGTCGAGTGAAATGCGATA GAATTTGTCTGTGAATAACCAAATATCGATTTTCCTTGTATATCGTGAAGAACAAATCTTCATAT TTACGATTCTTCACAAATTCGATGAAAATCTGATAGTTTTTTCAATTTCAGCTCTATAATTCCAA AAAAAATCTTTTGTCAATTTCGCGAAATGTCGTCAATTAAAATGCGCGCTGTGCAGTACGCAACG GTGTACAAAACTTTAAACTGAGTATTCAACGTTGAGCACGCAGTCAGCCAAATTGGAATACGGTA GAGAATTCTCGTCTATGTACCCCCCGCCGGGCCGTGACAGTACTTCGCGATTTACAAAAGTTGAG TTAGACATTCGGGAAAAACGTGGCTAGTGGTAAAATTGTGTAGAAAATTAGAATTTCATACTGTT TTTGCTTGGAACTTAGTTTGAAGGGGCGATAGTTTAAAGAATAAA Right flanking sequence: Indices 18937144 -- 18937643 TTAACAAAAACTCAAAAACTTTGAAAAATCGGGAAAACTAGTGAAATCCCAGAAAAAAAATCTAG ATAACCATGTCAGTCTGATCTTCAAAAGACAAGATATAAGTGTGACAAAAATGGGCGTAATGATA AGAACACACACACAAAAGTGAACGATTGATATCGTCACGAGGAGGGAATATATCTTGTAGACTAG AAAGTATGTAGTCAGTGTAGTTTTGGATTTAGTCATAGGAGTACAGGTATTCTTTTGGTTATTTG ATTTTTAGGCAGGAAAATTGGATTTTGAAGTGGTGATAACCTTATAAATTAGTCAATGTTAGTGA ATTTTAATACAACATATATGCTATAATTTTGGAATAATTGATAGGACCGAAGAAAATTAGACATG ATGAAATTTTTAACTACAAACTACAAACTACAAACTATAAAATAAACAGTAAACTATATATCATA CATATGTATAATATCAAAATACAATACTCCTGACACACTGACAGT Found at i:18937161 original size:8 final size:8 Alignment explanation
Indices: 18937148--18937163 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18937138 AAAATGTTAA 18937148 CAAAAACT 1 CAAAAACT 18937156 CAAAAACT 1 CAAAAACT 18937164 TTGAAAAATC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12 Consensus pattern (8 bp): CAAAAACT Left flanking sequence: Indices 18936648 -- 18937147 TCAAAAAAGCTCATCAGCAACTGCCGTCGAGTGAAATGCGATAGAATTTGTCTGTGAATAACCAA ATATCGATTTTCCTTGTATATCGTGAAGAACAAATCTTCATATTTACGATTCTTCACAAATTCGA TGAAAATCTGATAGTTTTTTCAATTTCAGCTCTATAATTCCAAAAAAAATCTTTTGTCAATTTCG CGAAATGTCGTCAATTAAAATGCGCGCTGTGCAGTACGCAACGGTGTACAAAACTTTAAACTGAG TATTCAACGTTGAGCACGCAGTCAGCCAAATTGGAATACGGTAGAGAATTCTCGTCTATGTACCC CCCGCCGGGCCGTGACAGTACTTCGCGATTTACAAAAGTTGAGTTAGACATTCGGGAAAAACGTG GCTAGTGGTAAAATTGTGTAGAAAATTAGAATTTCATACTGTTTTTGCTTGGAACTTAGTTTGAA GGGGCGATAGTTTAAAGAATAAAAAAAATATGAAAAAAATGTTAA Right flanking sequence: Indices 18937164 -- 18937663 TTGAAAAATCGGGAAAACTAGTGAAATCCCAGAAAAAAAATCTAGATAACCATGTCAGTCTGATC TTCAAAAGACAAGATATAAGTGTGACAAAAATGGGCGTAATGATAAGAACACACACACAAAAGTG AACGATTGATATCGTCACGAGGAGGGAATATATCTTGTAGACTAGAAAGTATGTAGTCAGTGTAG TTTTGGATTTAGTCATAGGAGTACAGGTATTCTTTTGGTTATTTGATTTTTAGGCAGGAAAATTG GATTTTGAAGTGGTGATAACCTTATAAATTAGTCAATGTTAGTGAATTTTAATACAACATATATG CTATAATTTTGGAATAATTGATAGGACCGAAGAAAATTAGACATGATGAAATTTTTAACTACAAA CTACAAACTACAAACTATAAAATAAACAGTAAACTATATATCATACATATGTATAATATCAAAAT ACAATACTCCTGACACACTGACAGTAATTTTTTTACAAACCTCCT Found at i:18937189 original size:10 final size:10 Alignment explanation
Indices: 18937165--18937189 Score: 29 Period size: 10 Copynumber: 2.5 Consensus size: 10 18937155 TCAAAAACTT * 18937165 TGAAAAATCG 1 TGAAAAATAG * * 18937175 GGAAAACTAG 1 TGAAAAATAG 18937185 TGAAA 1 TGAAA 18937190 TCCCAGAAAA Statistics Matches: 11, Mismatches: 4, Indels: 0 0.73 0.27 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.52, C:0.08, G:0.24, T:0.16 Consensus pattern (10 bp): TGAAAAATAG Left flanking sequence: Indices 18936665 -- 18937164 CAACTGCCGTCGAGTGAAATGCGATAGAATTTGTCTGTGAATAACCAAATATCGATTTTCCTTGT ATATCGTGAAGAACAAATCTTCATATTTACGATTCTTCACAAATTCGATGAAAATCTGATAGTTT TTTCAATTTCAGCTCTATAATTCCAAAAAAAATCTTTTGTCAATTTCGCGAAATGTCGTCAATTA AAATGCGCGCTGTGCAGTACGCAACGGTGTACAAAACTTTAAACTGAGTATTCAACGTTGAGCAC GCAGTCAGCCAAATTGGAATACGGTAGAGAATTCTCGTCTATGTACCCCCCGCCGGGCCGTGACA GTACTTCGCGATTTACAAAAGTTGAGTTAGACATTCGGGAAAAACGTGGCTAGTGGTAAAATTGT GTAGAAAATTAGAATTTCATACTGTTTTTGCTTGGAACTTAGTTTGAAGGGGCGATAGTTTAAAG AATAAAAAAAATATGAAAAAAATGTTAACAAAAACTCAAAAACTT Right flanking sequence: Indices 18937190 -- 18937689 TCCCAGAAAAAAAATCTAGATAACCATGTCAGTCTGATCTTCAAAAGACAAGATATAAGTGTGAC AAAAATGGGCGTAATGATAAGAACACACACACAAAAGTGAACGATTGATATCGTCACGAGGAGGG AATATATCTTGTAGACTAGAAAGTATGTAGTCAGTGTAGTTTTGGATTTAGTCATAGGAGTACAG GTATTCTTTTGGTTATTTGATTTTTAGGCAGGAAAATTGGATTTTGAAGTGGTGATAACCTTATA AATTAGTCAATGTTAGTGAATTTTAATACAACATATATGCTATAATTTTGGAATAATTGATAGGA CCGAAGAAAATTAGACATGATGAAATTTTTAACTACAAACTACAAACTACAAACTATAAAATAAA CAGTAAACTATATATCATACATATGTATAATATCAAAATACAATACTCCTGACACACTGACAGTA ATTTTTTTACAAACCTCCTTTTAATTTTGAAAATGTTAATCAATA Found at i:18937557 original size:7 final size:7 Alignment explanation
Indices: 18937545--18937574 Score: 53 Period size: 7 Copynumber: 4.3 Consensus size: 7 18937535 TGAAATTTTT 18937545 AACTACA 1 AACTACA 18937552 AACTACA 1 AACTACA 18937559 AACTACA 1 AACTACA * 18937566 AACTATA 1 AACTACA 18937573 AA 1 AA 18937575 ATAAACAGTA Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 7 22 1.00 ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17 Consensus pattern (7 bp): AACTACA Left flanking sequence: Indices 18937045 -- 18937544 GTAAAATTGTGTAGAAAATTAGAATTTCATACTGTTTTTGCTTGGAACTTAGTTTGAAGGGGCGA TAGTTTAAAGAATAAAAAAAATATGAAAAAAATGTTAACAAAAACTCAAAAACTTTGAAAAATCG GGAAAACTAGTGAAATCCCAGAAAAAAAATCTAGATAACCATGTCAGTCTGATCTTCAAAAGACA AGATATAAGTGTGACAAAAATGGGCGTAATGATAAGAACACACACACAAAAGTGAACGATTGATA TCGTCACGAGGAGGGAATATATCTTGTAGACTAGAAAGTATGTAGTCAGTGTAGTTTTGGATTTA GTCATAGGAGTACAGGTATTCTTTTGGTTATTTGATTTTTAGGCAGGAAAATTGGATTTTGAAGT GGTGATAACCTTATAAATTAGTCAATGTTAGTGAATTTTAATACAACATATATGCTATAATTTTG GAATAATTGATAGGACCGAAGAAAATTAGACATGATGAAATTTTT Right flanking sequence: Indices 18937575 -- 18938074 ATAAACAGTAAACTATATATCATACATATGTATAATATCAAAATACAATACTCCTGACACACTGA CAGTAATTTTTTTACAAACCTCCTTTTAATTTTGAAAATGTTAATCAATACATTGTCATTAGTAA AAATAATTATACTTTCTCGAATATTTGGTACAAACTCACAAACTAATGAAAATTTTACTAATGAC CACTACAATACTGTCATAGTATTGTTATTATTATTATTCTAGAGACCAAACCTCCCCTTCTATTG TTGTTTTCCTATTAATTAACTAAACAGTAGAGTTAAAATGACGTTAGTTTGAATAACATATGTAC ATACAAAGGAAGTAAGAAACAATGGTTAATTTTGAAGATATGATTGCATTTGAATTACAATTACA TGCATGAATAATATATTACTAAAAGCTTATTACTATATTATAATTTTTAATAATACTACATATAT ATTTTATTAAATTCACATAGGTATAAAAATTTTACTAACATCATA Found at i:18938130 original size:9 final size:9 Alignment explanation
Indices: 18938118--18938136 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 18938108 ATATATACCG 18938118 TATTAATAA 1 TATTAATAA * 18938127 TATTACTAA 1 TATTAATAA 18938136 T 1 T 18938137 GAAGAAAGGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47 Consensus pattern (9 bp): TATTAATAA Left flanking sequence: Indices 18937618 -- 18938117 TACAATACTCCTGACACACTGACAGTAATTTTTTTACAAACCTCCTTTTAATTTTGAAAATGTTA ATCAATACATTGTCATTAGTAAAAATAATTATACTTTCTCGAATATTTGGTACAAACTCACAAAC TAATGAAAATTTTACTAATGACCACTACAATACTGTCATAGTATTGTTATTATTATTATTCTAGA GACCAAACCTCCCCTTCTATTGTTGTTTTCCTATTAATTAACTAAACAGTAGAGTTAAAATGACG TTAGTTTGAATAACATATGTACATACAAAGGAAGTAAGAAACAATGGTTAATTTTGAAGATATGA TTGCATTTGAATTACAATTACATGCATGAATAATATATTACTAAAAGCTTATTACTATATTATAA TTTTTAATAATACTACATATATATTTTATTAAATTCACATAGGTATAAAAATTTTACTAACATCA TACAAGTCTAGTTTCACAAAATTCAATTCTATACAATATATACCG Right flanking sequence: Indices 18938137 -- 18938636 GAAGAAAGGCGAAGATTATAGGAAAAACTCGAAACAACATCATTACATGTATGGTATTACTACTG TGTTGATATTTACAAAAACATTTGAGGGAAGCTTAAAATTTTAAAAATTTTAGGTTACATACAAC ATTATCAACATTAACAACATTATTAGTGTTACTGATGAAAAAAATTTCAAAAAACTGCCCAGTTT TCAAGATTTCATACTAGATGCAATATATGGTAGTGTATATGATAGTATTAACATTATTTTGAAAC AAAAAATCCGAAAAAATTTCATGGAAAAGTTGTAAGGTACAAATAATTACGCTCACTTACACTAT GTGACTCCAAAAACTACATGAAAATAAATGTCGATCTCTCTTTCTTCTAAACTTGAACAAGGTGA CGTGACTTGTGTTATTGTTGTCATGTTATTGTGTGTGTGTGTGTTCTTTCTAAGAAACAATGACG CCTATTTTAGACCCCCCCCCCCCCCCTGTTGATGAATTATGTTAA Found at i:18938247 original size:8 final size:8 Alignment explanation
Indices: 18938234--18938253 Score: 31 Period size: 9 Copynumber: 2.4 Consensus size: 8 18938224 TGAGGGAAGC 18938234 TTAAAATT 1 TTAAAATT 18938242 TTAAAAATT 1 TT-AAAATT 18938251 TTA 1 TTA 18938254 GGTTACATAC Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 8 3 0.27 9 8 0.73 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (8 bp): TTAAAATT Left flanking sequence: Indices 18937734 -- 18938233 ACAAACTCACAAACTAATGAAAATTTTACTAATGACCACTACAATACTGTCATAGTATTGTTATT ATTATTATTCTAGAGACCAAACCTCCCCTTCTATTGTTGTTTTCCTATTAATTAACTAAACAGTA GAGTTAAAATGACGTTAGTTTGAATAACATATGTACATACAAAGGAAGTAAGAAACAATGGTTAA TTTTGAAGATATGATTGCATTTGAATTACAATTACATGCATGAATAATATATTACTAAAAGCTTA TTACTATATTATAATTTTTAATAATACTACATATATATTTTATTAAATTCACATAGGTATAAAAA TTTTACTAACATCATACAAGTCTAGTTTCACAAAATTCAATTCTATACAATATATACCGTATTAA TAATATTACTAATGAAGAAAGGCGAAGATTATAGGAAAAACTCGAAACAACATCATTACATGTAT GGTATTACTACTGTGTTGATATTTACAAAAACATTTGAGGGAAGC Right flanking sequence: Indices 18938254 -- 18938753 GGTTACATACAACATTATCAACATTAACAACATTATTAGTGTTACTGATGAAAAAAATTTCAAAA AACTGCCCAGTTTTCAAGATTTCATACTAGATGCAATATATGGTAGTGTATATGATAGTATTAAC ATTATTTTGAAACAAAAAATCCGAAAAAATTTCATGGAAAAGTTGTAAGGTACAAATAATTACGC TCACTTACACTATGTGACTCCAAAAACTACATGAAAATAAATGTCGATCTCTCTTTCTTCTAAAC TTGAACAAGGTGACGTGACTTGTGTTATTGTTGTCATGTTATTGTGTGTGTGTGTGTTCTTTCTA AGAAACAATGACGCCTATTTTAGACCCCCCCCCCCCCCCTGTTGATGAATTATGTTAATTGAGTG AGAAAACAGGAAAGTTGCTTATTTTAGGTTCGAAAACTATATCCTCGAGTTACAACTGTGAAAAA ATTTATTTTTTACATACATTGTTAACATGTATTTAATAGGTATGC Found at i:18938250 original size:9 final size:9 Alignment explanation
Indices: 18938236--18938253 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 18938226 AGGGAAGCTT 18938236 AAAATTTTA 1 AAAATTTTA 18938245 AAAATTTTA 1 AAAATTTTA 18938254 GGTTACATAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (9 bp): AAAATTTTA Left flanking sequence: Indices 18937736 -- 18938235 AAACTCACAAACTAATGAAAATTTTACTAATGACCACTACAATACTGTCATAGTATTGTTATTAT TATTATTCTAGAGACCAAACCTCCCCTTCTATTGTTGTTTTCCTATTAATTAACTAAACAGTAGA GTTAAAATGACGTTAGTTTGAATAACATATGTACATACAAAGGAAGTAAGAAACAATGGTTAATT TTGAAGATATGATTGCATTTGAATTACAATTACATGCATGAATAATATATTACTAAAAGCTTATT ACTATATTATAATTTTTAATAATACTACATATATATTTTATTAAATTCACATAGGTATAAAAATT TTACTAACATCATACAAGTCTAGTTTCACAAAATTCAATTCTATACAATATATACCGTATTAATA ATATTACTAATGAAGAAAGGCGAAGATTATAGGAAAAACTCGAAACAACATCATTACATGTATGG TATTACTACTGTGTTGATATTTACAAAAACATTTGAGGGAAGCTT Right flanking sequence: Indices 18938254 -- 18938753 GGTTACATACAACATTATCAACATTAACAACATTATTAGTGTTACTGATGAAAAAAATTTCAAAA AACTGCCCAGTTTTCAAGATTTCATACTAGATGCAATATATGGTAGTGTATATGATAGTATTAAC ATTATTTTGAAACAAAAAATCCGAAAAAATTTCATGGAAAAGTTGTAAGGTACAAATAATTACGC TCACTTACACTATGTGACTCCAAAAACTACATGAAAATAAATGTCGATCTCTCTTTCTTCTAAAC TTGAACAAGGTGACGTGACTTGTGTTATTGTTGTCATGTTATTGTGTGTGTGTGTGTTCTTTCTA AGAAACAATGACGCCTATTTTAGACCCCCCCCCCCCCCCTGTTGATGAATTATGTTAATTGAGTG AGAAAACAGGAAAGTTGCTTATTTTAGGTTCGAAAACTATATCCTCGAGTTACAACTGTGAAAAA ATTTATTTTTTACATACATTGTTAACATGTATTTAATAGGTATGC Found at i:18938277 original size:9 final size:9 Alignment explanation
Indices: 18938263--18938289 Score: 47 Period size: 9 Copynumber: 3.0 Consensus size: 9 18938253 AGGTTACATA 18938263 CAACATTAT 1 CAACATTAT * 18938272 CAACATTAA 1 CAACATTAT 18938281 CAACATTAT 1 CAACATTAT 18938290 TAGTGTTACT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30 Consensus pattern (9 bp): CAACATTAT Left flanking sequence: Indices 18937763 -- 18938262 TAATGACCACTACAATACTGTCATAGTATTGTTATTATTATTATTCTAGAGACCAAACCTCCCCT TCTATTGTTGTTTTCCTATTAATTAACTAAACAGTAGAGTTAAAATGACGTTAGTTTGAATAACA TATGTACATACAAAGGAAGTAAGAAACAATGGTTAATTTTGAAGATATGATTGCATTTGAATTAC AATTACATGCATGAATAATATATTACTAAAAGCTTATTACTATATTATAATTTTTAATAATACTA CATATATATTTTATTAAATTCACATAGGTATAAAAATTTTACTAACATCATACAAGTCTAGTTTC ACAAAATTCAATTCTATACAATATATACCGTATTAATAATATTACTAATGAAGAAAGGCGAAGAT TATAGGAAAAACTCGAAACAACATCATTACATGTATGGTATTACTACTGTGTTGATATTTACAAA AACATTTGAGGGAAGCTTAAAATTTTAAAAATTTTAGGTTACATA Right flanking sequence: Indices 18938290 -- 18938789 TAGTGTTACTGATGAAAAAAATTTCAAAAAACTGCCCAGTTTTCAAGATTTCATACTAGATGCAA TATATGGTAGTGTATATGATAGTATTAACATTATTTTGAAACAAAAAATCCGAAAAAATTTCATG GAAAAGTTGTAAGGTACAAATAATTACGCTCACTTACACTATGTGACTCCAAAAACTACATGAAA ATAAATGTCGATCTCTCTTTCTTCTAAACTTGAACAAGGTGACGTGACTTGTGTTATTGTTGTCA TGTTATTGTGTGTGTGTGTGTTCTTTCTAAGAAACAATGACGCCTATTTTAGACCCCCCCCCCCC CCCTGTTGATGAATTATGTTAATTGAGTGAGAAAACAGGAAAGTTGCTTATTTTAGGTTCGAAAA CTATATCCTCGAGTTACAACTGTGAAAAAATTTATTTTTTACATACATTGTTAACATGTATTTAA TAGGTATGCATATTTGGGGAATAGTAGTGAGTTTTTAAAACATCT Found at i:18939072 original size:8 final size:8 Alignment explanation
Indices: 18939059--18939077 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 18939049 AAATCGTTAA 18939059 TTTTGAAG 1 TTTTGAAG * 18939067 TTTTGAAT 1 TTTTGAAG 18939075 TTT 1 TTT 18939078 AAAAATTTTC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.21, C:0.00, G:0.16, T:0.63 Consensus pattern (8 bp): TTTTGAAG Left flanking sequence: Indices 18938559 -- 18939058 GTGTGTGTGTGTTCTTTCTAAGAAACAATGACGCCTATTTTAGACCCCCCCCCCCCCCCTGTTGA TGAATTATGTTAATTGAGTGAGAAAACAGGAAAGTTGCTTATTTTAGGTTCGAAAACTATATCCT CGAGTTACAACTGTGAAAAAATTTATTTTTTACATACATTGTTAACATGTATTTAATAGGTATGC ATATTTGGGGAATAGTAGTGAGTTTTTAAAACATCTTATAATTAAAAAAAAAAGTGTTTCCCTCA AAAACTCCACAAAATGCTTATTCATATCAAAATTAGAATTCTACACACAATTACCGTTATTTTGA CCCCCATATTGCCTATATTCAGTAAAATTTTATTTTTGCCCATCTTTTGCCGGTCTGTTGCCGAT TATATAGATTTTTATAAAAATTGACGCAATATAGGTAATATGGGGAAAAGAATAACAAAAATTAC ATGAAAAATTCAAAATCTGTAATTTTCGATGCTAAAAATCGTTAA Right flanking sequence: Indices 18939078 -- 18939577 AAAAATTTTCGAAAAATGTTTTTTTCTAACTTTTCTAAAAACTCAAAAAAGCACTAAAACTTGGT TTTTTGGGCATTTTCCATAACAAAATTAGAATTCTACACACGATTACCGTCGTTTTGACCCCCGT AATGTCTATATTCGATGAAATTTTGTTTTTGCCCATCTTTTGCCGGTTATATCGATTTGTAATTT TATGTGTAATTTTACAAAATATTTTTAAATGCTAGAAACATTATGAAATGCCGTTGTATTTGAAA GTAAGCAAGAAAATTCTAATTCAATAGTACATATTTACTGGAACGTTTTAAAATATCGTGTAAAA TATAAAATATACGTTAATTAACCATATGATTTAAAATCCTGCCTTTTAATAATGGGTACACACGA CCTATATTCTCAAGTAGAAGAAGGTCATTTCGCTACTCGGGTACACAAAGAGGTGTTCATATAAA CAATTAGTGATGTAACGGTAAACAATGAAGTATGCCCTTTATTGC Found at