TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:19593097 original size:8 final size:8 Alignment explanation
Indices: 19593084--19593100 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 19593074 AATTTTCTAT 19593084 TTCCAACC 1 TTCCAACC 19593092 TTCCAACC 1 TTCCAACC 19593100 T 1 T 19593101 AAATTCAAGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.47, G:0.00, T:0.29 Consensus pattern (8 bp): TTCCAACC Left flanking sequence: Indices 19592584 -- 19593083 CAAAAACTTTCAACTGACACAATATTTTTCATAAATTTTTCTACAAGTTTGCGGTTTTTTAATTC TTCATATCTTTAATTTATACATAGATATGAGCTGTCAAAATTGGACAAAACATGGTGCATCGACT CAACTTTGCCAGCTCATATCTCAGTTATTTTGGGTTTTATTCAAAAATTTTCAATTAGCAAAATA TTTGTTATAAATTTTTCTATAATTTTTTTGCAGTTTAACAATTTTTAATATCTGTAATATTCACA AAGTTATAAGCTGTCAAAGCTAGAAACCCTGGCTAGACATGGTGCATCGACCAAAATCCGTCAGC TAAACTTCGACAGCTCATATCTCGGTTATTTTTAAAGCTAATATTAACCGAGATATAGAATGTCA AAGTAACCTGACCCAAATTCAGGGCAAACTTTATACAAAAAAGCATCATCTTTGACCTTCTTTTG AGTTTTGAACATGGTGCATCGACTAGGTTCTCTCAAATTTTCTAT Right flanking sequence: Indices 19593101 -- 19593600 AAATTCAAGCCCACCGTGCAGTGAATTTGGTAATTCGAGCCCTAGCCAAGCCAAAAGTTTCATAC CTCGGGCTTAATTTTGAAAGCTCATATCTCGGCTATTTTTCATTTTATCAAAATTTTGTCAACTG GCAAAATATTTGTTGTAAATTTTCCTACAATTTTGTAGTTGAGCACTTTTTGATAGCTTCCATTA GAACGGAGATATGAGCTGTCAAAGTAGGACGGGAACATGGTGCATCGAAAAAATAACCCCTCAAA CTTTGTAACTTGACTCGGCTTCTGGAGCCTAAAGTTTCAGAAATCACGTTTCATTTTTTTCCTTT TTTTTCTTTTTTTCCACGTGACCCATCTTCTCAAATTTCCGCTTTTCCAGACGACCCATTTTTCC CCAACCCGCACCTCATTGACCGCAACAAGCTGTCAGCGATTCCGCCCCAACAGTCGCAACTTGAT GGCTGCCCGAGCACCGAGGAGCCGAGAAGAGGCTCACGTCGAATG Found at i:19593426 original size:9 final size:9 Alignment explanation
Indices: 19593409--19593440 Score: 50 Period size: 9 Copynumber: 3.6 Consensus size: 9 19593399 AGAAATCACG * 19593409 TTTCATTTT 1 TTTCCTTTT 19593418 TTTCCTTTT 1 TTTCCTTTT * 19593427 TTTTCTTTT 1 TTTCCTTTT 19593436 TTTCC 1 TTTCC 19593441 ACGTGACCCA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 9 20 1.00 ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78 Consensus pattern (9 bp): TTTCCTTTT Left flanking sequence: Indices 19592909 -- 19593408 TAAACTTCGACAGCTCATATCTCGGTTATTTTTAAAGCTAATATTAACCGAGATATAGAATGTCA AAGTAACCTGACCCAAATTCAGGGCAAACTTTATACAAAAAAGCATCATCTTTGACCTTCTTTTG AGTTTTGAACATGGTGCATCGACTAGGTTCTCTCAAATTTTCTATTTCCAACCTTCCAACCTAAA TTCAAGCCCACCGTGCAGTGAATTTGGTAATTCGAGCCCTAGCCAAGCCAAAAGTTTCATACCTC GGGCTTAATTTTGAAAGCTCATATCTCGGCTATTTTTCATTTTATCAAAATTTTGTCAACTGGCA AAATATTTGTTGTAAATTTTCCTACAATTTTGTAGTTGAGCACTTTTTGATAGCTTCCATTAGAA CGGAGATATGAGCTGTCAAAGTAGGACGGGAACATGGTGCATCGAAAAAATAACCCCTCAAACTT TGTAACTTGACTCGGCTTCTGGAGCCTAAAGTTTCAGAAATCACG Right flanking sequence: Indices 19593441 -- 19593940 ACGTGACCCATCTTCTCAAATTTCCGCTTTTCCAGACGACCCATTTTTCCCCAACCCGCACCTCA TTGACCGCAACAAGCTGTCAGCGATTCCGCCCCAACAGTCGCAACTTGATGGCTGCCCGAGCACC GAGGAGCCGAGAAGAGGCTCACGTCGAATGAGCCAGAAAAAGAGCTCCGGGGAGCGGCGGCGCCG CAGTGAGCTCACCAATGGCCACTCGGTGCCGAATAACCGGAAGACGAGTTGCCAGGTAGTGGGGG CGCCGAGGCGATCTACGTTGGCGCCCGGCTCCACTGCCCTGATGGCCCTGTCGCAGTTCGATTCT AGAAGGTTTTCTACGATTGATGGGCCGATTGCTCTGCGGAGGCAGAGCACAAAGCGGAGGGTTAT TAAAAGTGATCCGAAACAAATTATTCATATTTTTACGAATCCGTGTAAGCTTTGGTGGGATTTTT TGGCGGGAAATTTGAATTTTTAGTCACTTTTTCAGCTAGAAAATG Found at i:19593429 original size:10 final size:10 Alignment explanation
Indices: 19593414--19593438 Score: 43 Period size: 10 Copynumber: 2.5 Consensus size: 10 19593404 TCACGTTTCA 19593414 TTTTTTTCCT 1 TTTTTTTCCT * 19593424 TTTTTTTCTT 1 TTTTTTTCCT 19593434 TTTTT 1 TTTTT 19593439 CCACGTGACC Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (10 bp): TTTTTTTCCT Left flanking sequence: Indices 19592914 -- 19593413 TTCGACAGCTCATATCTCGGTTATTTTTAAAGCTAATATTAACCGAGATATAGAATGTCAAAGTA ACCTGACCCAAATTCAGGGCAAACTTTATACAAAAAAGCATCATCTTTGACCTTCTTTTGAGTTT TGAACATGGTGCATCGACTAGGTTCTCTCAAATTTTCTATTTCCAACCTTCCAACCTAAATTCAA GCCCACCGTGCAGTGAATTTGGTAATTCGAGCCCTAGCCAAGCCAAAAGTTTCATACCTCGGGCT TAATTTTGAAAGCTCATATCTCGGCTATTTTTCATTTTATCAAAATTTTGTCAACTGGCAAAATA TTTGTTGTAAATTTTCCTACAATTTTGTAGTTGAGCACTTTTTGATAGCTTCCATTAGAACGGAG ATATGAGCTGTCAAAGTAGGACGGGAACATGGTGCATCGAAAAAATAACCCCTCAAACTTTGTAA CTTGACTCGGCTTCTGGAGCCTAAAGTTTCAGAAATCACGTTTCA Right flanking sequence: Indices 19593439 -- 19593938 CCACGTGACCCATCTTCTCAAATTTCCGCTTTTCCAGACGACCCATTTTTCCCCAACCCGCACCT CATTGACCGCAACAAGCTGTCAGCGATTCCGCCCCAACAGTCGCAACTTGATGGCTGCCCGAGCA CCGAGGAGCCGAGAAGAGGCTCACGTCGAATGAGCCAGAAAAAGAGCTCCGGGGAGCGGCGGCGC CGCAGTGAGCTCACCAATGGCCACTCGGTGCCGAATAACCGGAAGACGAGTTGCCAGGTAGTGGG GGCGCCGAGGCGATCTACGTTGGCGCCCGGCTCCACTGCCCTGATGGCCCTGTCGCAGTTCGATT CTAGAAGGTTTTCTACGATTGATGGGCCGATTGCTCTGCGGAGGCAGAGCACAAAGCGGAGGGTT ATTAAAAGTGATCCGAAACAAATTATTCATATTTTTACGAATCCGTGTAAGCTTTGGTGGGATTT TTTGGCGGGAAATTTGAATTTTTAGTCACTTTTTCAGCTAGAAAA Found at i:19595374 original size:8 final size:8 Alignment explanation
Indices: 19595355--19595374 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 19595345 CAAGCTCAAT * * 19595355 TTGATTTT 1 TTGAGTTG 19595363 TTGAGTTG 1 TTGAGTTG 19595371 TTGA 1 TTGA 19595375 ACTCAATAAG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.15, C:0.00, G:0.25, T:0.60 Consensus pattern (8 bp): TTGAGTTG Left flanking sequence: Indices 19594855 -- 19595354 AGTAAGAAAAATTGTTGTTTTTTATATACGCTACTTCTTGGACCATTTTCCTAAGGTTAAGCCCA CCCGCAGTCATAATTTTCGAGAAAAGCAGGGGGATTAGAATAATAGGCGGCTGGGTGCACAATTT TTCCAGAAATTGTCAAATTTTCTGGTCAAATTTGCATTTTAAAATATACGAACTGACATCAGTTT TGTCCTTTTTCTAATCACATTTTATTCCAATAAAAATGCATGAGAAATTAGCCTGACCTTTGGGA TAATTGGCAAAAATGACAATTTTTAGGGGAGAAATTTCGAGAAAACGGAATTTCAAACACGTTTT CATAAAAACCAAAGGGTAAAAAGCACTGAAAACATGAAACAAAAAATTTTGACCTCACTGGGGGT CGAACCCTGGACCTCTACGTCAAGGCCAAACCTCTTCCCACCTGAGCCATCGCGTCCAATTTTCA AAATCGCAAAAAAAAAGCCTCCAGATGTCAAATTTCAAGCTCAAT Right flanking sequence: Indices 19595375 -- 19595874 ACTCAATAAGCCTTCAAAAATAAAGTAAACTCCTTGCTAAAAGCGCTTTCTTTTGCGATAATGAG CAATTTCCGCATCATTACCTTCTTGCAAAACACACACATAAAAGTGTCTTCTTTTTTTTTTCCTC GTCTTTACTAGAAAATCACGTAATTTCTCGATTTATTTGAGCAAAAAAAAATCCATTAAAAAATT GTGTTTTTTTTCATTTAGGCTTCAAGCTTTCAAGCTTTTCCGAATTATTTTTCAAAGTTATAAAT AGAAAAATGAAATTCAGTTGAAATTTTAGCCCCTGGAGACAATTTTCCGCAATTTTAAATTTTGG GGGAAGTGGCTCAGGTGGGTAGAGGAGTGACTATGGCGCAGAGGACCAGGGTTCAATCCCCACCG GTGGCAAAAATTTTTTATTCTGTTTTAGGGTAATCATAACTGAGTTTTGTCTCAACTGTAGTTTT TTAAATAAATATTTTCCGAATTTAAGTCAATTTCTGAAAATAAGG Found at i:19595603 original size:8 final size:8 Alignment explanation
Indices: 19595590--19595607 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 19595580 TCATTTAGGC 19595590 TTCAAGCT 1 TTCAAGCT 19595598 TTCAAGCT 1 TTCAAGCT 19595606 TT 1 TT 19595608 TCCGAATTAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44 Consensus pattern (8 bp): TTCAAGCT Left flanking sequence: Indices 19595090 -- 19595589 TGAGAAATTAGCCTGACCTTTGGGATAATTGGCAAAAATGACAATTTTTAGGGGAGAAATTTCGA GAAAACGGAATTTCAAACACGTTTTCATAAAAACCAAAGGGTAAAAAGCACTGAAAACATGAAAC AAAAAATTTTGACCTCACTGGGGGTCGAACCCTGGACCTCTACGTCAAGGCCAAACCTCTTCCCA CCTGAGCCATCGCGTCCAATTTTCAAAATCGCAAAAAAAAAGCCTCCAGATGTCAAATTTCAAGC TCAATTTGATTTTTTGAGTTGTTGAACTCAATAAGCCTTCAAAAATAAAGTAAACTCCTTGCTAA AAGCGCTTTCTTTTGCGATAATGAGCAATTTCCGCATCATTACCTTCTTGCAAAACACACACATA AAAGTGTCTTCTTTTTTTTTTCCTCGTCTTTACTAGAAAATCACGTAATTTCTCGATTTATTTGA GCAAAAAAAAATCCATTAAAAAATTGTGTTTTTTTTCATTTAGGC Right flanking sequence: Indices 19595608 -- 19596107 TCCGAATTATTTTTCAAAGTTATAAATAGAAAAATGAAATTCAGTTGAAATTTTAGCCCCTGGAG ACAATTTTCCGCAATTTTAAATTTTGGGGGAAGTGGCTCAGGTGGGTAGAGGAGTGACTATGGCG CAGAGGACCAGGGTTCAATCCCCACCGGTGGCAAAAATTTTTTATTCTGTTTTAGGGTAATCATA ACTGAGTTTTGTCTCAACTGTAGTTTTTTAAATAAATATTTTCCGAATTTAAGTCAATTTCTGAA AATAAGGTAAAAAATTAGTTTTTAAAAAAATTCAAAAGCTTATTTCGCTAAAACAGTGCTAGCAA AAAAAAAAGGTACTAGTCCTAAATCCCCCCGCCACTTTTCCTTTTCTACCCCGAATTCAAATTAA ACTCTCATGTGAATGTTTATTTTAATACTATTTTCATTTTTTGGCTTAGAAAACAACATTACTAA GCCTAAAATACGGAAAAAGGCCATGTTTTTATCGAAGAAAATGTA Found at i:19596245 original size:10 final size:10 Alignment explanation
Indices: 19596226--19596247 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 19596216 ACCGTGACCG 19596226 ATTTTCAAAA 1 ATTTTCAAAA * 19596236 ATTTTGAAAA 1 ATTTTCAAAA 19596246 AT 1 AT 19596248 GCATCCAGGG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.50, C:0.05, G:0.05, T:0.41 Consensus pattern (10 bp): ATTTTCAAAA Left flanking sequence: Indices 19595726 -- 19596225 GTGACTATGGCGCAGAGGACCAGGGTTCAATCCCCACCGGTGGCAAAAATTTTTTATTCTGTTTT AGGGTAATCATAACTGAGTTTTGTCTCAACTGTAGTTTTTTAAATAAATATTTTCCGAATTTAAG TCAATTTCTGAAAATAAGGTAAAAAATTAGTTTTTAAAAAAATTCAAAAGCTTATTTCGCTAAAA CAGTGCTAGCAAAAAAAAAAGGTACTAGTCCTAAATCCCCCCGCCACTTTTCCTTTTCTACCCCG AATTCAAATTAAACTCTCATGTGAATGTTTATTTTAATACTATTTTCATTTTTTGGCTTAGAAAA CAACATTACTAAGCCTAAAATACGGAAAAAGGCCATGTTTTTATCGAAGAAAATGTAAGGAAAAG TGGCGGGGTGATTTAGGACTAGTACTAAAAAAAAATTGTTCCTGGCGGGGGTCGAACCCTGGTAC TTTGTGCCAAAGCCAAACCTCTACCCACCTGAGCCACCGTGACCG Right flanking sequence: Indices 19596248 -- 19596747 GCATCCAGGGGTCAAATTTTGAGTTGAACTTCAATTTTTTATAATTTTTTCCCTCGTAGCATTTT ATAATATTCAACTCTTTAACCTTTTTTCTCACAATTTTTTCTGTGGGTTTGAACTTGAACTTGTG TTTTTTGTTGTACTTTAGCCTAAGAAAATCTAATTCCCATATAATGCTCTGAAAATTGTTGACAG AGTACCTAATATAAATTGGTTAAACTTAATTTAATCTCTTGGCAGAGTTTGGCTCCGCAAGTTTC AGTTTTTCGGGTGGAGCAGGAAATTGTTGCAAACTTCGACAAAAAATCATTTTTTGTCAATAACT GAGTGTTTATTTGAGTACAGCAAAACAAACAAAAAAGTTATACCACGGCGGGGATTGAACCTTCG ACCTCCAGAGCCATAGCCAAGCCTCTACCCAACTGAGCTACTTGTGCAATTTTCAAAATTTCGGA AAAAACGTCTCCAGGGGTCGAACTTCCAGCTGTTTTTGAATTTTC Found at i:19596798 original size:9 final size:9 Alignment explanation
Indices: 19596784--19596801 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 19596774 AAAACTGGAC 19596784 AATTTAGCA 1 AATTTAGCA 19596793 AATTTAGCA 1 AATTTAGCA 19596802 CCAATTTCTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33 Consensus pattern (9 bp): AATTTAGCA Left flanking sequence: Indices 19596284 -- 19596783 TTTTATAATTTTTTCCCTCGTAGCATTTTATAATATTCAACTCTTTAACCTTTTTTCTCACAATT TTTTCTGTGGGTTTGAACTTGAACTTGTGTTTTTTGTTGTACTTTAGCCTAAGAAAATCTAATTC CCATATAATGCTCTGAAAATTGTTGACAGAGTACCTAATATAAATTGGTTAAACTTAATTTAATC TCTTGGCAGAGTTTGGCTCCGCAAGTTTCAGTTTTTCGGGTGGAGCAGGAAATTGTTGCAAACTT CGACAAAAAATCATTTTTTGTCAATAACTGAGTGTTTATTTGAGTACAGCAAAACAAACAAAAAA GTTATACCACGGCGGGGATTGAACCTTCGACCTCCAGAGCCATAGCCAAGCCTCTACCCAACTGA GCTACTTGTGCAATTTTCAAAATTTCGGAAAAAACGTCTCCAGGGGTCGAACTTCCAGCTGTTTT TGAATTTTCTATTTTCGTACACAAAATTTGACCCGAAAACTGGAC Right flanking sequence: Indices 19596802 -- 19597301 CCAATTTCTATGAATTTTAAATTTAGATTGCTGGGAGGTCACCCTTCAATTTTTTCAGACTCACG TCATATTAGTATTTTGAGGCCAGGCACCACCCGCATGACCTGACCCAAATAAAAATGCATAAGAA ATGAGCTGAAAATTGGCAAAATGCCAGTTTTTGACTATTTTTAGAGCTAAATTTGAGGTGAAATT TCGAAAAAAAAAATCAAAGGGAGATTGTTTGCATGAAATTTAAAGTGTTATAGAGGTAAAACAAA TCGATAAAAAGTTTCGGCTCCAGTGGGGGTCGAACCCCCGACCTTCTGAGCCAAAGGCAAGCATT TACCCAACTGAGCCACTGATGCATTTTTTCAAAATTGCGGAAAAATGTGTCCAGAGGTGGAATTT TGAGCTAAGATTGATTTCTCCAATAATTTTCACTAAAAAATTTTCAAACGACACTTTCTTTTCGT TTTTTCTAAATTCTATCTAAAGTTTTAACAAAAAGAGGCAAACAC Found at i:19597604 original size:9 final size:10 Alignment explanation
Indices: 19597585--19597604 Score: 33 Period size: 9 Copynumber: 2.1 Consensus size: 10 19597575 TATTATCCCT 19597585 CTCGCCGGAG 1 CTCGCCGGAG 19597595 CTCG-CGGAG 1 CTCGCCGGAG 19597604 C 1 C 19597605 CCACCCCGGT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 6 0.60 10 4 0.40 ACGTcount: A:0.10, C:0.40, G:0.40, T:0.10 Consensus pattern (10 bp): CTCGCCGGAG Left flanking sequence: Indices 19597085 -- 19597584 TGGGGGTCGAACCCCCGACCTTCTGAGCCAAAGGCAAGCATTTACCCAACTGAGCCACTGATGCA TTTTTTCAAAATTGCGGAAAAATGTGTCCAGAGGTGGAATTTTGAGCTAAGATTGATTTCTCCAA TAATTTTCACTAAAAAATTTTCAAACGACACTTTCTTTTCGTTTTTTCTAAATTCTATCTAAAGT TTTAACAAAAAGAGGCAAACACTTTGAAATTCGAAATAAAAACGTTTCTATGGAAATAAAGTGAA TATTACTCTCGGAACAATGCAAACAAAATGATTACCCCAGTGGGAATCGAACCCCGACCTTCTGC GCCATAGCCAAACCTCTACCCAACTGAGCCACAGCGACCCGTCTACAAATTTGCAGAAAACGGGC TCCAGGGGTCAAATTTCAAGCTAAGCGTGATTTTTTACACCAACAACCTCCTATAGTGACCACAA ATCGCAAGAAAAACTCAATGAATTTTAAAGTATCGTATTATCCCT Right flanking sequence: Indices 19597605 -- 19598104 CCACCCCGGTCATTGTCCAGAAATAATCGTCCGTTTTATTCTCAAAATCTCCTCATTTTCCTCCT TCATCCTTTCCGTCAACTCTTGTGCATTTCCAATAATTAAAAACGGCTGGGCTTTTCCCCACGGA GCTCCGCCGCCGAGCAACTCCAAACAGCTCAAACTCCGCCCACTTTCCAGCTCACTGAGCCTCTC CCTGAGCTCTCTCCTCTTCTCAACTGAGTCTTTTCAGCTGGAAATAGCGAGATTTTCAGCCGATT TTTGTCTTGGTTACCAAGCCGACCACACTAATCTTGTTATCTCTATGTCCCCTGACATTTCCCTT TGAGCAAAAAAAACATTTGTGAGCCGCCCGTGAGCCTGTGAGCACAAGAAAAACAAATGCAAAAG CTCCAGGCGATTATTTTCGGGTTCTGTTTCAATTCTGACGCCAAAATTCTCATTGACGAAGGTAA ATCTCTCAATTTTCGGTTTATCTAATTGTTTTCCTCAGAAAAATT Found at i:19597972 original size:8 final size:8 Alignment explanation
Indices: 19597955--19597972 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 19597945 TTTGTGAGCC 19597955 GCCCGTGA 1 GCCCGTGA * 19597963 GCCTGTGA 1 GCCCGTGA 19597971 GC 1 GC 19597973 ACAAGAAAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.11, C:0.33, G:0.39, T:0.17 Consensus pattern (8 bp): GCCCGTGA Left flanking sequence: Indices 19597455 -- 19597954 CAAATTTGCAGAAAACGGGCTCCAGGGGTCAAATTTCAAGCTAAGCGTGATTTTTTACACCAACA ACCTCCTATAGTGACCACAAATCGCAAGAAAAACTCAATGAATTTTAAAGTATCGTATTATCCCT CTCGCCGGAGCTCGCGGAGCCCACCCCGGTCATTGTCCAGAAATAATCGTCCGTTTTATTCTCAA AATCTCCTCATTTTCCTCCTTCATCCTTTCCGTCAACTCTTGTGCATTTCCAATAATTAAAAACG GCTGGGCTTTTCCCCACGGAGCTCCGCCGCCGAGCAACTCCAAACAGCTCAAACTCCGCCCACTT TCCAGCTCACTGAGCCTCTCCCTGAGCTCTCTCCTCTTCTCAACTGAGTCTTTTCAGCTGGAAAT AGCGAGATTTTCAGCCGATTTTTGTCTTGGTTACCAAGCCGACCACACTAATCTTGTTATCTCTA TGTCCCCTGACATTTCCCTTTGAGCAAAAAAAACATTTGTGAGCC Right flanking sequence: Indices 19597973 -- 19598472 ACAAGAAAAACAAATGCAAAAGCTCCAGGCGATTATTTTCGGGTTCTGTTTCAATTCTGACGCCA AAATTCTCATTGACGAAGGTAAATCTCTCAATTTTCGGTTTATCTAATTGTTTTCCTCAGAAAAA TTGCTAAAACAAGGAAAGCTTAGTTTTAAATTTTTGGTCTCATCAAATAAAAAATTTTACCCCAC CGGGGGTCGAACCCGTGACCTTCTGCGTCATAGCCAAACCTCTACCCACCTGAGCCATCGGCGCA CTTTTTTTGAATATGCTGAAAAATGTGTCTCAGGGTCAAATTTTGAGCTGGGCCTGATTTTTTGA ATACTTTCAGTGAAAAAATCATTTCAAAACGCTTAAATTTGCGCTGACACCATTTTTTATCGGTG GCTACATGGAATTGAAGGAAAATCCTTTCATATCTGAGAAATTATAATACCGAAACACAACTAAC AAAAATGTTTTACCACAGCGGGATCGAACCCGCGACCTTCTGCGC Found at i:19599004 original size:8 final size:8 Alignment explanation
Indices: 19598991--19599006 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 19598981 ATTCCCAAAG 19598991 ATCTTAAA 1 ATCTTAAA 19598999 ATCTTAAA 1 ATCTTAAA 19599007 TTATACAGAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38 Consensus pattern (8 bp): ATCTTAAA Left flanking sequence: Indices 19598491 -- 19598990 CACCTGAGCCACCGCCGCCAAATTTTCAAAATTCAGAAAAAAAAAGAGTTTAGGAGTCAAATTTT AAGCTGAGTTCAAATTTTTGACTTATTTACTTCAAAAAATATGCCAAAACTTTTTTTTAACTCGA ATTTTAGAGTTTCTGAAAAATGTTGACTTTTGCAGTGAATTTTTAGGGTTTTTTTCCGTTTTTTT TTCAAATGTCCTGGGAATTTTCAGTAAGTGAGTGACTAGTACATTACAAAAATTCAAACATTTCC GACATATTACTCAAATATTCTCCCCCTCCGCGAAGATCTCAAAGAACACGAGAAGGGGTGTCTGG GGAATATTTTCGGGTGGATTTTATTGACAAGGGGTTCCGAAAAATGCTACAAAGTTTGTATGTTG AGAGAATAAAAAAATTGAACACGAAAATAAAAACAAAATTTGGCTTTTTTTTTTGGAAAAAATTT TTCTGAAATTTTGAAAAATAATTTTTTTTCTGAAAATTCCCAAAG Right flanking sequence: Indices 19599007 -- 19599506 TTATACAGATGATCGATATGTAAACGGTGGTGTCCGTTTTGACAATGACGTCATCGAGGAGGGCA CCGCATCGGGTGCAGCTTCTGGCGGCGTTGGGACTCCGAAGAAGATCGCCGGGTTCCGGAGACGG CAGAGTGGCTATGGAATTGCGATTTCCAGGTGAGAATTGGTGCTAAAATACTTGAAAATTCGGTT TCTACTCAAAATTTGAGTCCAGGAGGCAGTTTTTAGCAATTTGGAATTTTTGGACAAAAGTCTCA GCCGGTAAGAGGATTGACTATGGCGCAGAAGGTCGGGGGTTCGAACCCCACTGAGAGTGAAATTT TTTTTCGTGTTGATTGCAGCTTGTTTCTTGAAATTTTTATAAGAAAAATTAGAAAAATAGTTGAT TTTCAAGATTTTATTATCAAATTTATTTTTAGAAATTAAATTCCCTGGTTTTCCAGATTCAAAAA CTAAAAATTAACTTTAAAATCTGATTCTACACAAAATTTAGACCA Found at i:19601161 original size:7 final size:7 Alignment explanation
Indices: 19601146--19601162 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 19601136 ACTAATTCTA 19601146 AAAAAAG 1 AAAAAAG * 19601153 AAAACAG 1 AAAAAAG 19601160 AAA 1 AAA 19601163 CAATTTTCCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00 Consensus pattern (7 bp): AAAAAAG Left flanking sequence: Indices 19600646 -- 19601145 AATTTGAGATTCATGAGAAATTTGGAAAGCGGTGGAGTTTTGTTGCAAGAATTTGAGAAAAAAAG TATTATTAATATAATAATCTACACCAAAAAAATGCAAAATTTATTCGAAATTCCGATGGTTTTTA GGTGATTTTTTTTGGAATTTCGACAAAAAAAACTTCCAAAAAACTTGTGGTTCCTCAAGAAAAAA GATAATTTGATCTAATGTGAGCAAAACAAAAAAACTGGACCACGGCGGGGGTCGAACCCTTGACC TTCAGAGCCGAAGCCAAGCCTGTACCCAACTGAGCCACTGGTGCGCTTTTTCAAATTTTCGGTAA AAAGAGAGTGGAGGTCAAATTTCGAGCCAAACTCAGTTTTTAATCTAATTCAGATTTTTATAAGT TTGTGACGATTTTTTTCAATAAAAATTTATTTACAAAATAATTCCCCTCGAAATTTGCAATTTTG TTAAAATTTATACTTCTCAATTTTCAAAAACAACCACTAATTCTA Right flanking sequence: Indices 19601163 -- 19601662 CAATTTTCCACAGCGGGGGTCGAACCCCTGACCTTCTGCGCCCCAGCCAAACCTCTAACCAGCTG AGCCACCGCTACCCATTTTCAAAACTGCGAAAAAAAATGCTCCAGGGGTAGAATTTCAAGCTGAA TTCGAATTTTTAGTTAAAAATTCATATAATTTGACCGTTCACCTTGTGAGAAATTCGAAAAAAAA AACCAAAATAAATTTTCTCCACATTTTCCCCCGTAACTTCTCTATTACTCTCTCTCTCTCTCCCA TCACAAAAAGCCATCAGTGCTACCTGTGTGCTCCGCCCATTTTTTGCGCGGCTCCCTCTCGAGCA CAACACTCACACCTTTCGGCTCTCACAGCTCCAAAAAATCTGAGCAATTCGTCTAAAAATGCCAC GAAATTCGCTATTTCACTCGTTCGGCCACAGTATTCCCAGCGTTATTTTTCCGTGGTTCTGCCTG AGAAGAGATTTGGTAAAAATTCTGTAAGTTTTTGGGAGAAATTCT Found at i:19604050 original size:7 final size:7 Alignment explanation
Indices: 19604038--19604052 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 19604028 AATTTTGGGC 19604038 TCAAACT 1 TCAAACT 19604045 TCAAACT 1 TCAAACT 19604052 T 1 T 19604053 TTGTAACTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33 Consensus pattern (7 bp): TCAAACT Left flanking sequence: Indices 19603538 -- 19604037 AAAATCATGAGGATTTTCACTAGAAAAACCATCGTCGACACGATTTTCTTCTTTTTTGAGTGAGT TGGCTTAAAATGGAATTTTTTCTGCAAAAAAAAATTTTTTTTTTAATATTTTCGGTTAAAACTTC AAATTGCTCTAACTCCGCCCACTTTTGAGATTTTCGAAAAAATTGTTGCTTAAAATGTTTAAAAT TTCTATTTTAATCTAATATAGTAGTTTAAAAAAATTTAGTATGAGAATCTAAACAATTGTGGAAT TTTTCGTGAAGGAACCCATAAAAAAATGTTCAAAATAAAAAGGTTTGGTCTATTTTTCAAAATTA TGTAACTTAGTCAAATTTCGAGATAACCAGGTGATTTTTACTGTCAAATGTGCACAATATTAAGC TTAACACAAAACAGTAAAATATGTTATAGTTTATTCAAAACACAAACAAAAATTCAGGGCTTTTC GCGTAGGGACCCAAAACTAAAATTTTTCGAAAAAAAATTTTGGGC Right flanking sequence: Indices 19604053 -- 19604552 TTGTAACTCTGCCAGTTTTTTAGACTTTTGAGTGATTTTTAATTCAAAATGTGAGCAAACTTATG TTTAATACATAAATTATTGTTTTAAAAAGTTTGTTGAAAATGTACAATTTTTCGGGGCTTGTAGA CCCAAAAATTATTTTTTTAAATTATTTTTGGATCCAAAATTCAATTCTTTGTAACTCTGTCAGTT TTTAAGATTTTCGAGTGTTTGAAAGTTTGGAATGTATGTAAAAAATAATATTTTATCAAAATTTC AAAAAATTGGTAATGCGCAAATTTTCAATTTTCAAAATTATAGGTCAACTTTGGCTCCAAAATTT TTTTTTTCAATTTTCCAACTTTTTCTATTTCAGTGACAGCACGGCCAAAATGCGATGCCGCCTAC GCAAGCAGCTTTTTATCCGAAGAAATAAGGTACGGTTTCTTAAAATTTTTTTGGAAAGATTGGAA AATTTTTGACACCAAAAACCACATATTTTCTCATGACGTCTGGGC Found at i:19604344 original size:7 final size:7 Alignment explanation
Indices: 19604332--19604347 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 19604322 GTAATGCGCA 19604332 AATTTTC 1 AATTTTC 19604339 AATTTTC 1 AATTTTC 19604346 AA 1 AA 19604348 AATTATAGGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (7 bp): AATTTTC Left flanking sequence: Indices 19603832 -- 19604331 ATAAAAAGGTTTGGTCTATTTTTCAAAATTATGTAACTTAGTCAAATTTCGAGATAACCAGGTGA TTTTTACTGTCAAATGTGCACAATATTAAGCTTAACACAAAACAGTAAAATATGTTATAGTTTAT TCAAAACACAAACAAAAATTCAGGGCTTTTCGCGTAGGGACCCAAAACTAAAATTTTTCGAAAAA AAATTTTGGGCTCAAACTTCAAACTTTTGTAACTCTGCCAGTTTTTTAGACTTTTGAGTGATTTT TAATTCAAAATGTGAGCAAACTTATGTTTAATACATAAATTATTGTTTTAAAAAGTTTGTTGAAA ATGTACAATTTTTCGGGGCTTGTAGACCCAAAAATTATTTTTTTAAATTATTTTTGGATCCAAAA TTCAATTCTTTGTAACTCTGTCAGTTTTTAAGATTTTCGAGTGTTTGAAAGTTTGGAATGTATGT AAAAAATAATATTTTATCAAAATTTCAAAAAATTGGTAATGCGCA Right flanking sequence: Indices 19604348 -- 19604847 AATTATAGGTCAACTTTGGCTCCAAAATTTTTTTTTTCAATTTTCCAACTTTTTCTATTTCAGTG ACAGCACGGCCAAAATGCGATGCCGCCTACGCAAGCAGCTTTTTATCCGAAGAAATAAGGTACGG TTTCTTAAAATTTTTTTGGAAAGATTGGAAAATTTTTGACACCAAAAACCACATATTTTCTCATG ACGTCTGGGCTCCAAAATGTGTGAGAAAATGGAGCAAAAGAAATATTTGGAAAAATTGGATTTGT GACAACTGCACCTGCCTAGCAACCAAGCACTGACAACATTCGTCATGTGATTTGCGATTAGGGGA ATATTTTTGAGAAAAAACATTTTGTCCAAAAAAAAAATTTTTTTTTTGAATTTTTTTTTTTGAAT TTTTTTTGAACTTTCCAAAAATTGTTCTAAATTTTACAGTTAACAATTTAAGTATTATTTAGGTA TGCGACATATCCTTATTCCTTGCGGTACTCGGCCTCCTATTGGTA Found at i:19604400 original size:9 final size:8 Alignment explanation
Indices: 19604380--19604399 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 19604370 CAAAATTTTT * 19604380 TTTTTCAA 1 TTTTCCAA 19604388 TTTTCCAA 1 TTTTCCAA * 19604396 CTTT 1 TTTT 19604400 TTCTATTTCA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60 Consensus pattern (8 bp): TTTTCCAA Left flanking sequence: Indices 19603880 -- 19604379 TCGAGATAACCAGGTGATTTTTACTGTCAAATGTGCACAATATTAAGCTTAACACAAAACAGTAA AATATGTTATAGTTTATTCAAAACACAAACAAAAATTCAGGGCTTTTCGCGTAGGGACCCAAAAC TAAAATTTTTCGAAAAAAAATTTTGGGCTCAAACTTCAAACTTTTGTAACTCTGCCAGTTTTTTA GACTTTTGAGTGATTTTTAATTCAAAATGTGAGCAAACTTATGTTTAATACATAAATTATTGTTT TAAAAAGTTTGTTGAAAATGTACAATTTTTCGGGGCTTGTAGACCCAAAAATTATTTTTTTAAAT TATTTTTGGATCCAAAATTCAATTCTTTGTAACTCTGTCAGTTTTTAAGATTTTCGAGTGTTTGA AAGTTTGGAATGTATGTAAAAAATAATATTTTATCAAAATTTCAAAAAATTGGTAATGCGCAAAT TTTCAATTTTCAAAATTATAGGTCAACTTTGGCTCCAAAATTTTT Right flanking sequence: Indices 19604400 -- 19604899 TTCTATTTCAGTGACAGCACGGCCAAAATGCGATGCCGCCTACGCAAGCAGCTTTTTATCCGAAG AAATAAGGTACGGTTTCTTAAAATTTTTTTGGAAAGATTGGAAAATTTTTGACACCAAAAACCAC ATATTTTCTCATGACGTCTGGGCTCCAAAATGTGTGAGAAAATGGAGCAAAAGAAATATTTGGAA AAATTGGATTTGTGACAACTGCACCTGCCTAGCAACCAAGCACTGACAACATTCGTCATGTGATT TGCGATTAGGGGAATATTTTTGAGAAAAAACATTTTGTCCAAAAAAAAAATTTTTTTTTTGAATT TTTTTTTTTGAATTTTTTTTGAACTTTCCAAAAATTGTTCTAAATTTTACAGTTAACAATTTAAG TATTATTTAGGTATGCGACATATCCTTATTCCTTGCGGTACTCGGCCTCCTATTGGTAATAATCG ACTCTGAACTTACGGCTCTCTCCAGCTCAACCGGTATAACTAAGG Found at i:19608498 original size:8 final size:8 Alignment explanation
Indices: 19608467--19608498 Score: 27 Period size: 8 Copynumber: 3.9 Consensus size: 8 19608457 TTAAACCTAT ** 19608467 ATTTTTGT 1 ATTTTTTA * * 19608475 ATTTTATC 1 ATTTTTTA 19608483 ATTATTTTA 1 ATT-TTTTA 19608492 ATTTTTT 1 ATTTTTT 19608499 CACCTGTGAT Statistics Matches: 18, Mismatches: 5, Indels: 2 0.72 0.20 0.08 Matches are distributed among these distances: 8 12 0.67 9 6 0.33 ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72 Consensus pattern (8 bp): ATTTTTTA Left flanking sequence: Indices 19607967 -- 19608466 TAGACGTCGGAAAACTGCACAGCGACATGCACGAGACCCTCTGGGAGATGCACCGTACCCAGGAC CACTTCATCTCCCAGATCGACGTGCTCACTCAGAAGATCATGGAGCTCCAAATGACTCTGAACAC CCGACCGCCGTGTTGTGCTCCACCGACTTCATCATCCAACGACGCGTACTTCTCTACCTCAACTC AGCTGGGCACAGTACTGCCTACAGTGATCCCGACGATTCCCCTGCCGCCCACGCAGTCGCCAATG CTCCACGCGAGCCAGTCACACCGGGAGCCCCTCCAGGTCACCACCACGACTACTACGTCATCAGA TGGTCTGCCACGTATTAGCGTCGGATCCACGTCATCAACTGCCACTTCAGCATCCTCTGGGAACG GTAGTCTCCCACAGTGTACGGTAGATCAATTGTCCAACTGCCCGACCGGCGGGATCTACGCTACA GTAACCACACCGCTGATTTCAAATTTCGAAGAGGTTTAAACCTAT Right flanking sequence: Indices 19608499 -- 19608998 CACCTGTGATTAATTCTGTGTTCGCTCCCCCGTTTTGTCCCATTTTTTTGCCATTTTTGATCTCC TTGTCCTACTCCGGTGTTGCCTCCTTCCGTTTGCAATATCAAAATGTGATTCGAAACTTTTTAAA ATTTTTTTGACCAACTTTGTCGTTTTTCCCCCGATTTTTTATATTGAATAAAGCTAATATTTTGC TTCTGAATTACACAATTTTCCAGTTTTCAGGATTCGATATTAGAAAAATCGTGTTCTACTGAAAA TTTGAACCAGTTTGTTAGTTGAAAAATTTTCGATATCTTCATTTTCCGCGGAGTTAGGACGCTTC AAAGTTTGGAGGGGGAGAGAGTGTGGGGCAGAGGGAGAGCGCAGAGAGGCACACACCCTGCGTCT CTCCCCTTCCACACTGTCTCGCCTCAAAACTTCGGCCACGCGTAACTTCTTAACGGTTAGAGATA CTGAAAAATTTCCAACTAGAGCAATGTTCAGCACAACATTTTGCG Found at i:19609383 original size:9 final size:9 Alignment explanation
Indices: 19609365--19609383 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 19609355 GGGCAGCATT * 19609365 TATTTGAAA 1 TATTTCAAA 19609374 TATTTCAAA 1 TATTTCAAA 19609383 T 1 T 19609384 TGAATAAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47 Consensus pattern (9 bp): TATTTCAAA Left flanking sequence: Indices 19608865 -- 19609364 CAGAGAGGCACACACCCTGCGTCTCTCCCCTTCCACACTGTCTCGCCTCAAAACTTCGGCCACGC GTAACTTCTTAACGGTTAGAGATACTGAAAAATTTCCAACTAGAGCAATGTTCAGCACAACATTT TGCGTACAGAGAGGCAGCATTTATTTGAAAATTATAAAATTGAAGAAACTTTTTAGATTTTCTTG TCAATTGTTCAAAATTTTGATACAAAATTCTGAAAGATCATCACATAACAATCATTTTTGTCTTT TATAGTTCCTCGATATCTTCATTTTCCGCGGAGATATGAAGGTTCAAAGTTTGGAGGGTGAGAGA GTATGGTGGAGGGGGAGAGCGCAGAAAGGCTCGCGCACCCTGCGTCTTACCCCCCTCCACACTCT CTCACCTCAAAACTTTGAGCGCGCATAACTTTTTAACGGTTAGAGATACTGAAAAATTTCCAACT GGAGCAATGTTCAGCACAACATTTTGCGTACAGAGGGGCAGCATT Right flanking sequence: Indices 19609384 -- 19609883 TGAATAAAATTTTCAGACTTTTTTTCAATTTTTCAAAATTTTGATGCAAAATTCTGAAAGAACAT CACATAACAATCATTTTTGTCTTTTATAGTTTCTCGATATCTTCATTTTCCGCGGAGATATGAAG GTTCAAAGTTTGGAGGGTGAGAGAGTATGGTGGAGAGGGAGAGCGCAGAGAGGCACACACCCTGC GTCTCTCCGCCACCCACACTGTCTCGCTTCAAAACTTCGAACGCGCATAACTTCTTAACGGTCAG AGATATCGAAAAAATTCGTAAAAGAAAAATGTTTAGCGCAACATTTTGCGTTCATTAAGAAAACT TTTCACAAAAAGAATTCAAATATTTAGACAATTTTAGGGGACAAATGTTTTTGTCAGGTCAAAAT GTTAATTTGATCAAGCCTTTGTGATTATAACAACGTTTTCCGACCAAAAAAAAAGTGTAGAATTC ACCGAATTTCTCCAGTTTTTCGGGGTAAAGTGTAAAATTTTGGAC Found at i:19609417 original size:8 final size:8 Alignment explanation
Indices: 19609404--19609419 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 19609394 TTTCAGACTT 19609404 TTTTTCAA 1 TTTTTCAA 19609412 TTTTTCAA 1 TTTTTCAA 19609420 AATTTTGATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62 Consensus pattern (8 bp): TTTTTCAA Left flanking sequence: Indices 19608904 -- 19609403 GTCTCGCCTCAAAACTTCGGCCACGCGTAACTTCTTAACGGTTAGAGATACTGAAAAATTTCCAA CTAGAGCAATGTTCAGCACAACATTTTGCGTACAGAGAGGCAGCATTTATTTGAAAATTATAAAA TTGAAGAAACTTTTTAGATTTTCTTGTCAATTGTTCAAAATTTTGATACAAAATTCTGAAAGATC ATCACATAACAATCATTTTTGTCTTTTATAGTTCCTCGATATCTTCATTTTCCGCGGAGATATGA AGGTTCAAAGTTTGGAGGGTGAGAGAGTATGGTGGAGGGGGAGAGCGCAGAAAGGCTCGCGCACC CTGCGTCTTACCCCCCTCCACACTCTCTCACCTCAAAACTTTGAGCGCGCATAACTTTTTAACGG TTAGAGATACTGAAAAATTTCCAACTGGAGCAATGTTCAGCACAACATTTTGCGTACAGAGGGGC AGCATTTATTTGAAATATTTCAAATTGAATAAAATTTTCAGACTT Right flanking sequence: Indices 19609420 -- 19609919 AATTTTGATGCAAAATTCTGAAAGAACATCACATAACAATCATTTTTGTCTTTTATAGTTTCTCG ATATCTTCATTTTCCGCGGAGATATGAAGGTTCAAAGTTTGGAGGGTGAGAGAGTATGGTGGAGA GGGAGAGCGCAGAGAGGCACACACCCTGCGTCTCTCCGCCACCCACACTGTCTCGCTTCAAAACT TCGAACGCGCATAACTTCTTAACGGTCAGAGATATCGAAAAAATTCGTAAAAGAAAAATGTTTAG CGCAACATTTTGCGTTCATTAAGAAAACTTTTCACAAAAAGAATTCAAATATTTAGACAATTTTA GGGGACAAATGTTTTTGTCAGGTCAAAATGTTAATTTGATCAAGCCTTTGTGATTATAACAACGT TTTCCGACCAAAAAAAAAGTGTAGAATTCACCGAATTTCTCCAGTTTTTCGGGGTAAAGTGTAAA ATTTTGGACCAGAATTGTCTTGTTTTAATGATCATCGCCGATCAT Found at i:19611640 original size:10 final size:10 Alignment explanation
Indices: 19611635--19611658 Score: 41 Period size: 10 Copynumber: 2.4 Consensus size: 10 19611625 CTAAAATTAA 19611635 AAAAAAATTC 1 AAAAAAATTC * 19611645 AAAAAATTTC 1 AAAAAAATTC 19611655 AAAA 1 AAAA 19611659 TTTTCGAAGT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21 Consensus pattern (10 bp): AAAAAAATTC Left flanking sequence: Indices 19611135 -- 19611634 CCCCCTCCCACACTATTTTGGCATTAAAACTTTGAGCGCGCGTAGCTCCTTAACGGTAAGGGATA TCGAAAAAATTTTCACTGCAGAAATGATCAGCGCAAAATTTTGAACAAACTGCCGTACATTTTAA AGTGTTTAGTTGAAAAGTCTCGAAAAAAACCGCGGACAAAAGATGAAAGCGGCGGTTCAAATTAG TTAGTGTAAGACGGCGCGCACAAATCAGAATAGGCAGTCTTTGCCCGCGCGTCTTTATCATATCA GTTTCCTATTTGGTGTACCCATTTGATTGATAGTCTATTGGATTTTCGAGAAGAAAAACTGTATG GTGACATCACTCGGCGGCGGGTATAAAAGCAGCTTTGTCTCAGCGATTCTGACCAGTCAGAAATG GCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGGCCCAAAATTTGTATATATTTGAGCATATTTAG GCAAATTTCCATATTTTTCAAATTACGCGAAATTTCTAAAATTAA Right flanking sequence: Indices 19611659 -- 19612158 TTTTCGAAGTCCATAAATCGCTCAGTTTTTGAGATTTTCAGTTTTTTTTTTGACTAAGATACCAT TTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCTCTTAAAATTATGATAGTTACTGAACAA ATCTGAAAGTTCCAAAATGCCTTTTTTTAAGTTTTTTTTTTTTTTTTTAAGTTTTAACTAATTAG GCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGATGAAAATCTCAAAAACTGAGCGAGTTAT GGATTTTCGAAAATCTTAAAAAATTTAAAATTTAAAATTTTTTCTTTAATTTTAGGTCCTGCCGC GAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATTTAATTTGGCTTTTTATAGAAAAAAA ACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAAAAGCTCAAAAACTGAGCGAGTTATG GATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAATTTAAG Found at i:19611704 original size:8 final size:8 Alignment explanation
Indices: 19611680--19611704 Score: 36 Period size: 8 Copynumber: 3.1 Consensus size: 8 19611670 CATAAATCGC 19611680 TCAGTTTT 1 TCAGTTTT * * 19611688 TGAGATTT 1 TCAGTTTT 19611696 TCAGTTTT 1 TCAGTTTT 19611704 T 1 T 19611705 TTTTTGACTA Statistics Matches: 13, Mismatches: 4, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60 Consensus pattern (8 bp): TCAGTTTT Left flanking sequence: Indices 19611180 -- 19611679 CTCCTTAACGGTAAGGGATATCGAAAAAATTTTCACTGCAGAAATGATCAGCGCAAAATTTTGAA CAAACTGCCGTACATTTTAAAGTGTTTAGTTGAAAAGTCTCGAAAAAAACCGCGGACAAAAGATG AAAGCGGCGGTTCAAATTAGTTAGTGTAAGACGGCGCGCACAAATCAGAATAGGCAGTCTTTGCC CGCGCGTCTTTATCATATCAGTTTCCTATTTGGTGTACCCATTTGATTGATAGTCTATTGGATTT TCGAGAAGAAAAACTGTATGGTGACATCACTCGGCGGCGGGTATAAAAGCAGCTTTGTCTCAGCG ATTCTGACCAGTCAGAAATGGCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGGCCCAAAATTTGT ATATATTTGAGCATATTTAGGCAAATTTCCATATTTTTCAAATTACGCGAAATTTCTAAAATTAA AAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGC Right flanking sequence: Indices 19611705 -- 19612204 TTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCTCTTAAAAT TATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTAAGTTTTTTTTTTTTTTT TTAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGATGAAAATCT CAAAAACTGAGCGAGTTATGGATTTTCGAAAATCTTAAAAAATTTAAAATTTAAAATTTTTTCTT TAATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATTTAATTT GGCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAAAAGCTC AAAAACTGAGCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAATTTAAGT TTCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAAC Found at i:19611825 original size:10 final size:10 Alignment explanation
Indices: 19611810--19611843 Score: 47 Period size: 10 Copynumber: 3.4 Consensus size: 10 19611800 CCAAAATGCC 19611810 TTTTTTTAAG 1 TTTTTTTAAG *** 19611820 TTTTTTTTTT 1 TTTTTTTAAG 19611830 TTTTTTTAAG 1 TTTTTTTAAG 19611840 TTTT 1 TTTT 19611844 AACTAATTAG Statistics Matches: 18, Mismatches: 6, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 10 18 1.00 ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82 Consensus pattern (10 bp): TTTTTTTAAG Left flanking sequence: Indices 19611310 -- 19611809 AAAGCGGCGGTTCAAATTAGTTAGTGTAAGACGGCGCGCACAAATCAGAATAGGCAGTCTTTGCC CGCGCGTCTTTATCATATCAGTTTCCTATTTGGTGTACCCATTTGATTGATAGTCTATTGGATTT TCGAGAAGAAAAACTGTATGGTGACATCACTCGGCGGCGGGTATAAAAGCAGCTTTGTCTCAGCG ATTCTGACCAGTCAGAAATGGCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGGCCCAAAATTTGT ATATATTTGAGCATATTTAGGCAAATTTCCATATTTTTCAAATTACGCGAAATTTCTAAAATTAA AAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGCTCAGTTTTTGAGATTTTCAG TTTTTTTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCTCTT AAAATTATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCC Right flanking sequence: Indices 19611844 -- 19612343 AACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGATGAAAATCTCAAAAACTG AGCGAGTTATGGATTTTCGAAAATCTTAAAAAATTTAAAATTTAAAATTTTTTCTTTAATTTTAG GTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATTTAATTTGGCTTTTTA TAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAAAAGCTCAAAAACTGA GCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAATTTAAGTTTCTGTCGC GAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACGTTAAATTTTAATTTTTAAAGAAAAATAC AAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAAACTCAAAAACTGAGCGAGTTATGGA TTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTTAGGTC Found at i:19611946 original size:9 final size:10 Alignment explanation
Indices: 19611928--19611948 Score: 35 Period size: 9 Copynumber: 2.2 Consensus size: 10 19611918 TGGATTTTCG 19611928 AAAATCTTAA 1 AAAATCTTAA 19611938 AAAAT-TTAA 1 AAAATCTTAA 19611947 AA 1 AA 19611949 TTTAAAATTT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 6 0.55 10 5 0.45 ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29 Consensus pattern (10 bp): AAAATCTTAA Left flanking sequence: Indices 19611428 -- 19611927 TCTATTGGATTTTCGAGAAGAAAAACTGTATGGTGACATCACTCGGCGGCGGGTATAAAAGCAGC TTTGTCTCAGCGATTCTGACCAGTCAGAAATGGCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGG CCCAAAATTTGTATATATTTGAGCATATTTAGGCAAATTTCCATATTTTTCAAATTACGCGAAAT TTCTAAAATTAAAAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGCTCAGTTTT TGAGATTTTCAGTTTTTTTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACT ACTTTAGCTCTTAAAATTATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTA AGTTTTTTTTTTTTTTTTTAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAA ACATGGGATGAAAATCTCAAAAACTGAGCGAGTTATGGATTTTCG Right flanking sequence: Indices 19611949 -- 19612448 TTTAAAATTTTTTCTTTAATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAG AGCTAACATTTAATTTGGCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAA ATGGGCCTAAAAGCTCAAAAACTGAGCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAA TTTTTGAAATTTAAGTTTCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACGTTA AATTTTAATTTTTAAAGAAAAATACAAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAA ACTCAAAAACTGAGCGAGTTATGGATTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTT AGGTCCTGTCGCGAAAACGTTTTGGGTACTGTAATCACTATGGCTCACATCCCAATAATTATTTT TGCAGTAAAGAACAAACTTTACGGTAAATTTTAAGTCAAAAATGG Found at i:19611948 original size:8 final size:8 Alignment explanation
Indices: 19611928--19611959 Score: 34 Period size: 8 Copynumber: 3.9 Consensus size: 8 19611918 TGGATTTTCG 19611928 AAAATCTTA 1 AAAAT-TTA * * 19611937 AAAAATTT 1 AAAATTTA 19611945 AAAATTTA 1 AAAATTTA * 19611953 AAATTTT 1 AAAATTT 19611960 TTCTTTAATT Statistics Matches: 18, Mismatches: 5, Indels: 1 0.75 0.21 0.04 Matches are distributed among these distances: 8 14 0.78 9 4 0.22 ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41 Consensus pattern (8 bp): AAAATTTA Left flanking sequence: Indices 19611428 -- 19611927 TCTATTGGATTTTCGAGAAGAAAAACTGTATGGTGACATCACTCGGCGGCGGGTATAAAAGCAGC TTTGTCTCAGCGATTCTGACCAGTCAGAAATGGCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGG CCCAAAATTTGTATATATTTGAGCATATTTAGGCAAATTTCCATATTTTTCAAATTACGCGAAAT TTCTAAAATTAAAAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGCTCAGTTTT TGAGATTTTCAGTTTTTTTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACT ACTTTAGCTCTTAAAATTATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTA AGTTTTTTTTTTTTTTTTTAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAA ACATGGGATGAAAATCTCAAAAACTGAGCGAGTTATGGATTTTCG Right flanking sequence: Indices 19611960 -- 19612459 TTCTTTAATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATTT AATTTGGCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAAA AGCTCAAAAACTGAGCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAATT TAAGTTTCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACGTTAAATTTTAATTT TTAAAGAAAAATACAAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAAACTCAAAAACT GAGCGAGTTATGGATTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTTAGGTCCTGTCG CGAAAACGTTTTGGGTACTGTAATCACTATGGCTCACATCCCAATAATTATTTTTGCAGTAAAGA ACAAACTTTACGGTAAATTTTAAGTCAAAAATGGAGTGAAAATCT Found at i:19611950 original size:7 final size:7 Alignment explanation
Indices: 19611938--19611958 Score: 42 Period size: 7 Copynumber: 3.0 Consensus size: 7 19611928 AAAATCTTAA 19611938 AAAATTT 1 AAAATTT 19611945 AAAATTT 1 AAAATTT 19611952 AAAATTT 1 AAAATTT 19611959 TTTCTTTAAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): AAAATTT Left flanking sequence: Indices 19611438 -- 19611937 TTTCGAGAAGAAAAACTGTATGGTGACATCACTCGGCGGCGGGTATAAAAGCAGCTTTGTCTCAG CGATTCTGACCAGTCAGAAATGGCTTTGTTTCGTTGCTTTTTGTGAATTTTTTGGCCCAAAATTT GTATATATTTGAGCATATTTAGGCAAATTTCCATATTTTTCAAATTACGCGAAATTTCTAAAATT AAAAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGCTCAGTTTTTGAGATTTTC AGTTTTTTTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCTC TTAAAATTATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTAAGTTTTTTTT TTTTTTTTTAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGATG AAAATCTCAAAAACTGAGCGAGTTATGGATTTTCGAAAATCTTAA Right flanking sequence: Indices 19611959 -- 19612458 TTTCTTTAATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATT TAATTTGGCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAA AAGCTCAAAAACTGAGCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAAT TTAAGTTTCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACGTTAAATTTTAATT TTTAAAGAAAAATACAAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAAACTCAAAAAC TGAGCGAGTTATGGATTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTTAGGTCCTGTC GCGAAAACGTTTTGGGTACTGTAATCACTATGGCTCACATCCCAATAATTATTTTTGCAGTAAAG AACAAACTTTACGGTAAATTTTAAGTCAAAAATGGAGTGAAAATC Found at i:19612146 original size:9 final size:9 Alignment explanation
Indices: 19612132--19612155 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 19612122 AATACCTTCA 19612132 AAATTTTTG 1 AAATTTTTG 19612141 AAATTTTTG 1 AAATTTTTG 19612150 AAATTT 1 AAATTT 19612156 AAGTTTCTGT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54 Consensus pattern (9 bp): AAATTTTTG Left flanking sequence: Indices 19611632 -- 19612131 TAAAAAAAAATTCAAAAAATTTCAAAATTTTCGAAGTCCATAAATCGCTCAGTTTTTGAGATTTT CAGTTTTTTTTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCT CTTAAAATTATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTAAGTTTTTTT TTTTTTTTTTAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGAT GAAAATCTCAAAAACTGAGCGAGTTATGGATTTTCGAAAATCTTAAAAAATTTAAAATTTAAAAT TTTTTCTTTAATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACA TTTAATTTGGCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCT AAAAGCTCAAAAACTGAGCGAGTTATGGATTTTCGAATACCTTCA Right flanking sequence: Indices 19612156 -- 19612655 AAGTTTCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACGTTAAATTTTAATTTT TAAAGAAAAATACAAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAAACTCAAAAACTG AGCGAGTTATGGATTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTTAGGTCCTGTCGC GAAAACGTTTTGGGTACTGTAATCACTATGGCTCACATCCCAATAATTATTTTTGCAGTAAAGAA CAAACTTTACGGTAAATTTTAAGTCAAAAATGGAGTGAAAATCTGAAAAACTGGCCGATTTATGG ATTCTCGAAAATGTACGAAATTATCGAGTTTTTGAATATAAGGTCCTGACGCGAAAACTCTTTGG GTACTGTAACCACTATAGTTTACGGTTCAACACTATTTTGGCAAAAAAACACAAGCTTTAAGGTA AATTTTAAGTCAAAAATGGAGTGAAACTCTGAAAAACTGGCCGAT Found at i:19612221 original size:7 final size:7 Alignment explanation
Indices: 19612206--19612224 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 19612196 GTTCATAACG 19612206 TTAAATT 1 TTAAATT * 19612213 TTAATTT 1 TTAAATT 19612220 TTAAA 1 TTAAA 19612225 GAAAAATACA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (7 bp): TTAAATT Left flanking sequence: Indices 19611706 -- 19612205 TTTTGACTAAGATACCATTTTGAATATTTGTTTTACTATTAAAAACTACTTTAGCTCTTAAAATT ATGATAGTTACTGAACAAATCTGAAAGTTCCAAAATGCCTTTTTTTAAGTTTTTTTTTTTTTTTT TAAGTTTTAACTAATTAGGCAAGACTTCAAGCTGAATTTTAAGACAAACATGGGATGAAAATCTC AAAAACTGAGCGAGTTATGGATTTTCGAAAATCTTAAAAAATTTAAAATTTAAAATTTTTTCTTT AATTTTAGGTCCTGCCGCGAAAAACTCTTTGACTACTGTAATCACTAGAGCTAACATTTAATTTG GCTTTTTATAGAAAAAAAACCAGATTTAAGGTGAATTTTAAGTCAAAAATGGGCCTAAAAGCTCA AAAACTGAGCGAGTTATGGATTTTCGAATACCTTCAAAATTTTTGAAATTTTTGAAATTTAAGTT TCTGTCGCGAAAACTCTTTTTGTACTGGTATAAAAGTTCATAACG Right flanking sequence: Indices 19612225 -- 19612724 GAAAAATACAAGATTCAATCTAATTTTTAAGCCAAAAATGGGCTTAAAAACTCAAAAACTGAGCG AGTTATGGATTTTCAAAAATTATCAAAAAAAATTGTGTTTTTTAAATTTAGGTCCTGTCGCGAAA ACGTTTTGGGTACTGTAATCACTATGGCTCACATCCCAATAATTATTTTTGCAGTAAAGAACAAA CTTTACGGTAAATTTTAAGTCAAAAATGGAGTGAAAATCTGAAAAACTGGCCGATTTATGGATTC TCGAAAATGTACGAAATTATCGAGTTTTTGAATATAAGGTCCTGACGCGAAAACTCTTTGGGTAC TGTAACCACTATAGTTTACGGTTCAACACTATTTTGGCAAAAAAACACAAGCTTTAAGGTAAATT TTAAGTCAAAAATGGAGTGAAACTCTGAAAAACTGGCCGATTTATGGATTTTCGAAAATCTTCCA ATTTTGTTTTTTTTTTAATTCTCACTTTTTTTTCACAATTTTGAA Found at