TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:13089365 original size:10 final size:11 Alignment explanation
Indices: 13089339--13089365 Score: 40 Period size: 11 Copynumber: 2.5 Consensus size: 11 13089329 TGCCGGAAAT * 13089339 GAAACTTTCCA 1 GAAAATTTCCA 13089350 GAAAATTTCC- 1 GAAAATTTCCA 13089360 GAAAAT 1 GAAAAT 13089366 CAAAATTTCC Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 10 6 0.40 11 9 0.60 ACGTcount: A:0.44, C:0.19, G:0.11, T:0.26 Consensus pattern (11 bp): GAAAATTTCCA Left flanking sequence: Indices 13088839 -- 13089338 GGAATTGAAGCCGATGTGTTCCATATTCCAGTGGACGATCTTGAATCGCTAACGGTACAGATTCA AAATCGATTTTTTTTCCGGCAAATAGGCAAATTTCCGGAATTGAAATTTCCGGCAAATCGGCAAA ATACCGAAAATCAAAATTTCCCCCAAATCGGCAAATTGCCGGAAATCAAAATTTCCAGCAAGTTA CCGTTTTGCCGAATTTGCCGGAAAAACGGCAATTGCCGAAAATGTTCGGCAAACATTTTAGAATT TCCATTTTAAATGTTTTCGTCATATAAAAAATCCCTGTATAAATTTCCGGCAAATCGGCAAATTA CCAGAATTGAAAATTTCCCGCAAATCGGCTATCTGCCGAAAATCAAAAATTCCGGCAAATCGGCA CTTTGCCGGAAATGAAAATTTCCAGCAAGTTGCCAAAAATCAAAAATTCCGGCAAATCGGCAATG TGACGAAAATCCAAATTTTCGGCACATCGACTAGGTGCCGGAAAT Right flanking sequence: Indices 13089366 -- 13089865 CAAAATTTCCGGCAAATCGGCAAAGCGGCATTAAAATTTCAATTTTAAATGCTTCCGTCTTATAA AAAATTCCTCTAAAAATTTCCGGCAAATTGATGTCCGGCAAATCGACAATTTGCTGAAAATCAAA ATTTCCGGCAAATCTGCAACTTGTCGGATTTGAAAATTTCCGGCATATCAGCAAACCGGCAAATT GCCGAATTCGCCGAAAATTTTCGGCAAAAATTTCAGAATTTCAATTTAAAATGTTTCCGTCTTAT AAAAAGTCCTCCTAAACATGTGTCGGCAAACAGCAAATCGGCAATTTGCCGAAAATCAAAATTTC CGGCAAACCGGCAACTTGCTGATTTGCCGAATTTGTTGAAAATCGACACCCAGCCTGATTCATTC AGAAAATTCAAATCAAAATTTTCAGGAACATCGCAACCGAGCTTCAATAACACACATTCTTGCCG TCTATAACACACTTAACGAGGTCATTTGCAAAACGGAAACATCTT Found at i:13091266 original size:11 final size:11 Alignment explanation
Indices: 13091250--13091271 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 13091240 TTTCTTCCTC 13091250 TTTTTTTTTCT 1 TTTTTTTTTCT 13091261 TTTTTTTTTCT 1 TTTTTTTTTCT 13091272 CTGCCTTCTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91 Consensus pattern (11 bp): TTTTTTTTTCT Left flanking sequence: Indices 13090750 -- 13091249 TTCATATTTTATTTAGTCATTGTTTGAAATTTCCAATTTCCAGATCGACAAGCTATTCGATCAGC TGATCCAGAAACATGGAAAAGTCGACCTGTCACCGCTCCGAAGACAATTTCACATCACTCTCAAT GGCATTTCGACGGGCTCTGCGCAAGTGGCCATTCTCTTTTACCGGCAATCGGACAATTTCTACCG TTATCTCGTCTAGCATTTCTAGCATTTCTAGGACTTTTCCATTTTTAACTTTTTTTTTATTGTTT TGTTCTCTATTTGTTGCCCCATTATCTCCCTTTTACTGTATTATGATGTGAATATTCATTTTTCT TTTTCTTTTTTTGTTGCTTCTTTTTTCCTATTTCCGTTTAGTGCCTTTTTATATACAATCATCTC AATTTTATTTAATCATTTCATTTTTTTTCGCCTAGTTGTAAATATATCGCAGAACTCTTTCACTC GTCATAATTGTCCCCTCTGCTTTGAATTAAAATCATTTCTTCCTC Right flanking sequence: Indices 13091272 -- 13091771 CTGCCTTCTTTCCTCATTCCGCCATATCTCTTTATGTGTTCCATCTCTCATGTGCCTATTCGGGA TATATTCGTAGTATTTATATCAAAGTGTGTTTGGTCGGAATCGATGAATCATTTCATTTTATTCT GACGATAATGTCTCAAGTCTTGTATGGAAAAAGGAAAAGCTGATGAAATGATAAGAATGACGAAG AAGAAGAAGAAGGAGAACATAATCGTCCAGTTCGTCTGGTCGTGTGTCACCTCTTTTCCACCCAC CCCTCCACATTTTGGCGATTTTCCAAAGATATGGTGTACTTTTCATCGATTTTTGCATTATTATT ATTTTCATTTATTTTCACAGTTGGATTGTGTTATCAAACAAGATTCAAACGGGATTTCATGTTGA TAACAGATGGTAATATGACAGATGCCAAGTGCTTCGAAGTAGGTGCAAATAGTTATTATATTGAC GCAAAAATTTGGGTCTCGACACGACGAATTTTTTTGTTAAATGCG Found at i:13097204 original size:35 final size:35 Alignment explanation
Indices: 13097160--13097231 Score: 116 Period size: 35 Copynumber: 2.1 Consensus size: 35 13097150 TCAAAAAAAA * 13097160 AAAATTTCAATTCCGGCAATTTACCGATTTGCCGG 1 AAAATTTCAATTCCGGCAATTTACCGATTTGCCAG * * * 13097195 AAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAG 1 AAAATTTCAATTCCGGCAATTTACCGATTTGCCAG 13097230 AA 1 AA 13097232 TGGAAATATT Statistics Matches: 33, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 35 33 1.00 ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32 Consensus pattern (35 bp): AAAATTTCAATTCCGGCAATTTACCGATTTGCCAG Left flanking sequence: Indices 13096660 -- 13097159 CACATTGACATGTTCCAGCTTCTACTCGGGCACCTCCAAAAACTGGTGCAGTTTGATATTGGCGC TTAACGCGGAGCCCACTGGTTTTTCCGCGGAGCATCACATTCCACGAGTCGGAGGAGTAATACTG AAATTATGGCAATTAATGGAAGAACGGCAGTGTGTCGATTTACGCAGCATGTGAACTCCCCGAGG AGAAGTGGGAATTTTTTGGCGCAGAGGGTTTTAAAGTTTTCGGCTAAAAGAAAGGGTTTGTAACA TTTAAATGGCCAAATTATTTTTATTTGAATTGTTCTAACTTAGGTAACAAACGATATGATTACGG TATAAAATGGCAAGTTCTCGTTTCCAGTAAAGAAACCAAATGTTTTTGCCGACGAAATCGGCAAA TGGGCAAATTGCCGGTTTGCCGTATATTTTGAATTTTGGCAAATTGCCGATTCATAGGATGCGTA CAATTTTGTCGATTGAAATCAAAACTCTGAAATTTTCAAAAAAAA Right flanking sequence: Indices 13097232 -- 13097731 TGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTT CAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAA TTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATTGCCG TAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAA TGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCAAATTG TCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAA TTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCC GGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATCGGC Found at i:13097304 original size:26 final size:26 Alignment explanation
Indices: 13097250--13097316 Score: 104 Period size: 26 Copynumber: 2.5 Consensus size: 26 13097240 TTCGGAAAAT * 13097250 CGGCAAATTGCCGTAAATTTTCAATTC 1 CGGCAAATTGCCG-AAAGTTTCAATTC * 13097277 CGGCAAACTGCCGAAAGTTTCAATTC 1 CGGCAAATTGCCGAAAGTTTCAATTC * 13097303 CGGCAACTTGCCGA 1 CGGCAAATTGCCGA 13097317 TTTGTCGAAA Statistics Matches: 36, Mismatches: 4, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 26 24 0.67 27 12 0.33 ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25 Consensus pattern (26 bp): CGGCAAATTGCCGAAAGTTTCAATTC Left flanking sequence: Indices 13096750 -- 13097249 CGCGGAGCATCACATTCCACGAGTCGGAGGAGTAATACTGAAATTATGGCAATTAATGGAAGAAC GGCAGTGTGTCGATTTACGCAGCATGTGAACTCCCCGAGGAGAAGTGGGAATTTTTTGGCGCAGA GGGTTTTAAAGTTTTCGGCTAAAAGAAAGGGTTTGTAACATTTAAATGGCCAAATTATTTTTATT TGAATTGTTCTAACTTAGGTAACAAACGATATGATTACGGTATAAAATGGCAAGTTCTCGTTTCC AGTAAAGAAACCAAATGTTTTTGCCGACGAAATCGGCAAATGGGCAAATTGCCGGTTTGCCGTAT ATTTTGAATTTTGGCAAATTGCCGATTCATAGGATGCGTACAATTTTGTCGATTGAAATCAAAAC TCTGAAATTTTCAAAAAAAAAAAATTTCAATTCCGGCAATTTACCGATTTGCCGGAAATTTTCAA TTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAAT Right flanking sequence: Indices 13097317 -- 13097816 TTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTG CCGATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAA ACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTG CAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCA ATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAAT TTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCA GAATTGAAATATTCGGAAAATCGGCAAATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAG TTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGTTCAATTCC Found at i:13097468 original size:26 final size:26 Alignment explanation
Indices: 13097414--13097480 Score: 104 Period size: 26 Copynumber: 2.5 Consensus size: 26 13097404 TTCGGAAAAT * 13097414 CGGCAAATTGCCGTAAATTTTCAATTC 1 CGGCAAATTGCCG-AAAGTTTCAATTC * 13097441 CGGCAAACTGCCGAAAGTTTCAATTC 1 CGGCAAATTGCCGAAAGTTTCAATTC * 13097467 CGGCAACTTGCCGA 1 CGGCAAATTGCCGA 13097481 TTTGTCAGAA Statistics Matches: 36, Mismatches: 4, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 26 24 0.67 27 12 0.33 ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25 Consensus pattern (26 bp): CGGCAAATTGCCGAAAGTTTCAATTC Left flanking sequence: Indices 13096914 -- 13097413 GTAACATTTAAATGGCCAAATTATTTTTATTTGAATTGTTCTAACTTAGGTAACAAACGATATGA TTACGGTATAAAATGGCAAGTTCTCGTTTCCAGTAAAGAAACCAAATGTTTTTGCCGACGAAATC GGCAAATGGGCAAATTGCCGGTTTGCCGTATATTTTGAATTTTGGCAAATTGCCGATTCATAGGA TGCGTACAATTTTGTCGATTGAAATCAAAACTCTGAAATTTTCAAAAAAAAAAAATTTCAATTCC GGCAATTTACCGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAAT ATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCC GGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAA TTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAAT Right flanking sequence: Indices 13097481 -- 13097980 TTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATT CCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTC AATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAA TTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATCGGCAAATTCCCG TAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAA TGTTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCAAATTG TCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCCGACTTGCCAGAAATTTTCAATTCCGGCAA TATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGG Found at i:13097537 original size:11 final size:11 Alignment explanation
Indices: 13097515--13097540 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 13097505 CAATTTGCAG * 13097515 ATTTACCGGAA 1 ATTTACCAGAA * 13097526 ATTTGCCAGAA 1 ATTTACCAGAA 13097537 ATTT 1 ATTT 13097541 CAATTCCGGC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35 Consensus pattern (11 bp): ATTTACCAGAA Left flanking sequence: Indices 13097015 -- 13097514 AGAAACCAAATGTTTTTGCCGACGAAATCGGCAAATGGGCAAATTGCCGGTTTGCCGTATATTTT GAATTTTGGCAAATTGCCGATTCATAGGATGCGTACAATTTTGTCGATTGAAATCAAAACTCTGA AATTTTCAAAAAAAAAAAATTTCAATTCCGGCAATTTACCGATTTGCCGGAAATTTTCAATTCCG GCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAAT TCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCGG CAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATAT TCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGG CAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAG Right flanking sequence: Indices 13097541 -- 13098040 CAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAA TTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCC GGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATCGGCAAAT TCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTC AGAAATGTTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCA AATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCCGACTTGCCAGAAATTTTCAATTCC GGCAATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACAAAACCACC GTAAATCGACACTAAAACTCTAGAATCACCTGAAACTCATTCAAA Found at i:13097603 original size:79 final size:80 Alignment explanation
Indices: 13097449--13097608 Score: 227 Period size: 79 Copynumber: 2.0 Consensus size: 80 13097439 TCCGGCAAAC * * * * 13097449 TGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCA 1 TGCCGAAAGTTTCAATTCCGGCAAATTGCCAATTTGTCAGAAAGGCTCAATTCCGCCAATTCGCA 13097514 GATTTACCGGAAATT 66 GATTTACCGGAAATT * ** * 13097529 TGCCAGAAA-TTTCAATTCCGGCAAATTGTCAATTTGTC-GAAAGTTTCAATTCCGGCAATTCGC 1 TGCC-GAAAGTTTCAATTCCGGCAAATTGCCAATTTGTCAGAAAGGCTCAATTCCGCCAATTCGC * * 13097592 TGATTTGCCGGAAATT 65 AGATTTACCGGAAATT 13097608 T 1 T 13097609 TCAATTCCGG Statistics Matches: 69, Mismatches: 10, Indels: 3 0.84 0.12 0.04 Matches are distributed among these distances: 79 35 0.51 80 30 0.43 81 4 0.06 ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32 Consensus pattern (80 bp): TGCCGAAAGTTTCAATTCCGGCAAATTGCCAATTTGTCAGAAAGGCTCAATTCCGCCAATTCGCA GATTTACCGGAAATT Left flanking sequence: Indices 13096949 -- 13097448 TTGTTCTAACTTAGGTAACAAACGATATGATTACGGTATAAAATGGCAAGTTCTCGTTTCCAGTA AAGAAACCAAATGTTTTTGCCGACGAAATCGGCAAATGGGCAAATTGCCGGTTTGCCGTATATTT TGAATTTTGGCAAATTGCCGATTCATAGGATGCGTACAATTTTGTCGATTGAAATCAAAACTCTG AAATTTTCAAAAAAAAAAAATTTCAATTCCGGCAATTTACCGATTTGCCGGAAATTTTCAATTCC GGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAA TTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCG GCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATA TTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAAC Right flanking sequence: Indices 13097609 -- 13098108 TCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGA AATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATCGGCAAATTCC CGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGA AATGTTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCAAAT TGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCCGACTTGCCAGAAATTTTCAATTCCGGC AATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACAAAACCACCGTA AATCGACACTAAAACTCTAGAATCACCTGAAACTCATTCAAATTGTCTAGAATTTCACTCTGAAA TTCTGAAATATCCGAGAGAATGTAAGCACAGCCAAATATGGCAGT Found at i:13097661 original size:70 final size:68 Alignment explanation
Indices: 13097526--13097768 Score: 282 Period size: 70 Copynumber: 3.5 Consensus size: 68 13097516 TTTACCGGAA * * * * * 13097526 ATTTGCCAGAAA-TTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTC 1 ATTTGCCGGAAATTTTCAATTCCGGCAATTTGCCGATTTGCCGAAA-TTTCAATTCCGGCAATTC 13097590 GCTG 65 GCTG * * 13097594 ATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATT 1 ATTTGCCGGAAATTTTCAATTCCGGCAATTTGCCGATTTGCC-GAAA-TTTCAATTCCGGCAATT 13097659 CGCTG 64 CGCTG * ** ** * * * 13097664 ATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATC 1 ATTTGCCGGAAATTTTCAATTCCGGCAATTTGCCGATTTGCCGAAATTTCAAT-TCCGGCAATTC *** 13097729 GGCA 65 GCTG * * * ** 13097733 AATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGA 1 ATTTGCCGGAAATTTTCAATTCCGGCAATTTGCCGA 13097769 AAGTTTCAAT Statistics Matches: 145, Mismatches: 27, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 68 16 0.11 69 64 0.44 70 65 0.45 ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32 Consensus pattern (68 bp): ATTTGCCGGAAATTTTCAATTCCGGCAATTTGCCGATTTGCCGAAATTTCAATTCCGGCAATTCG CTG Left flanking sequence: Indices 13097026 -- 13097525 GTTTTTGCCGACGAAATCGGCAAATGGGCAAATTGCCGGTTTGCCGTATATTTTGAATTTTGGCA AATTGCCGATTCATAGGATGCGTACAATTTTGTCGATTGAAATCAAAACTCTGAAATTTTCAAAA AAAAAAAATTTCAATTCCGGCAATTTACCGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCG ATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACT GCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGA TTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAATCG GCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGA TTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAA Right flanking sequence: Indices 13097769 -- 13098268 AAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGTTCAATTCCGCCAATTTGCAGATTTA CCGGAAATTTGCCAGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGC AATTTGCCGACTTGCCAGAAATTTTCAATTCCGGCAATATGCCAAGTTGCCCCATAAAAACTGTG AAAACGTTTTCCTCGGGGAGTACAAAACCACCGTAAATCGACACTAAAACTCTAGAATCACCTGA AACTCATTCAAATTGTCTAGAATTTCACTCTGAAATTCTGAAATATCCGAGAGAATGTAAGCACA GCCAAATATGGCAGTAATGACGGAGATAGAAGAAGCAAAAATGATGGAATTTAGTAAATATTTGA CTTTATTATCCATAATAACTGGCTGGAATGTAAATATAAAACAAGAGTTTGGGTTACTACATACA CGAAAATATTCAAAAGGCTGACTTAGTTTTTATAGCACAATTTAG Found at i:13097778 original size:26 final size:26 Alignment explanation
Indices: 13097728--13097794 Score: 97 Period size: 26 Copynumber: 2.5 Consensus size: 26 13097718 TTCGGAAAAT * * 13097728 CGGCAAATTCCCGTAAATTTTCAATTC 1 CGGCAAATTGCCG-AAAGTTTCAATTC * 13097755 CGGCAAACTGCCGAAAGTTTCAATTC 1 CGGCAAATTGCCGAAAGTTTCAATTC * 13097781 CGGCAACTTGCCGA 1 CGGCAAATTGCCGA 13097795 TTTGTCAGAA Statistics Matches: 35, Mismatches: 5, Indels: 1 0.85 0.12 0.02 Matches are distributed among these distances: 26 24 0.69 27 11 0.31 ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25 Consensus pattern (26 bp): CGGCAAATTGCCGAAAGTTTCAATTC Left flanking sequence: Indices 13097228 -- 13097727 AGAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAA GTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCG GAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTCGGAAAATCGGCAAATT GCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCA GAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATTCCGGCAA ATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCG GCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAA TTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAAT Right flanking sequence: Indices 13097795 -- 13098294 TTTGTCAGAAATGTTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAAATTTCAATT CCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCCGACTTGCCAGAAATTTTC AATTCCGGCAATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACAAA ACCACCGTAAATCGACACTAAAACTCTAGAATCACCTGAAACTCATTCAAATTGTCTAGAATTTC ACTCTGAAATTCTGAAATATCCGAGAGAATGTAAGCACAGCCAAATATGGCAGTAATGACGGAGA TAGAAGAAGCAAAAATGATGGAATTTAGTAAATATTTGACTTTATTATCCATAATAACTGGCTGG AATGTAAATATAAAACAAGAGTTTGGGTTACTACATACACGAAAATATTCAAAAGGCTGACTTAG TTTTTATAGCACAATTTAGATGATGAGAGAGAAAAATACTTAAAT Found at i:13097841 original size:35 final size:35 Alignment explanation
Indices: 13097773--13097841 Score: 96 Period size: 35 Copynumber: 2.0 Consensus size: 35 13097763 TGCCGAAAGT * * ** 13097773 TTCAATTCCGGCAACTTGCCGATTTGTCAGAAATG 1 TTCAATTCCGCCAACTTGCAGATTTACCAGAAATG * * 13097808 TTCAATTCCGCCAATTTGCAGATTTACCGGAAAT 1 TTCAATTCCGCCAACTTGCAGATTTACCAGAAAT 13097842 TTGCCAGAAA Statistics Matches: 28, Mismatches: 6, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 35 28 1.00 ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32 Consensus pattern (35 bp): TTCAATTCCGCCAACTTGCAGATTTACCAGAAATG Left flanking sequence: Indices 13097273 -- 13097772 ATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAGTTTCAATTCC GGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAAT ATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCC GGCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCC AGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTT GCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCT GATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAAT CGGCAAATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGT Right flanking sequence: Indices 13097842 -- 13098341 TTGCCAGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCC GACTTGCCAGAAATTTTCAATTCCGGCAATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTT TTCCTCGGGGAGTACAAAACCACCGTAAATCGACACTAAAACTCTAGAATCACCTGAAACTCATT CAAATTGTCTAGAATTTCACTCTGAAATTCTGAAATATCCGAGAGAATGTAAGCACAGCCAAATA TGGCAGTAATGACGGAGATAGAAGAAGCAAAAATGATGGAATTTAGTAAATATTTGACTTTATTA TCCATAATAACTGGCTGGAATGTAAATATAAAACAAGAGTTTGGGTTACTACATACACGAAAATA TTCAAAAGGCTGACTTAGTTTTTATAGCACAATTTAGATGATGAGAGAGAAAAATACTTAAATAC CTACTTCCACTCAAGTGGCCGTACTTTCTTTTTCTCTTACAATTA Found at i:13097851 original size:11 final size:11 Alignment explanation
Indices: 13097829--13097854 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 13097819 CAATTTGCAG * 13097829 ATTTACCGGAA 1 ATTTACCAGAA * 13097840 ATTTGCCAGAA 1 ATTTACCAGAA 13097851 ATTT 1 ATTT 13097855 CAATTCCGGC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35 Consensus pattern (11 bp): ATTTACCAGAA Left flanking sequence: Indices 13097329 -- 13097828 TTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAG AATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGT TTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGG AAATTTGCCAGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATT CGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGG CAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATAT TCGGAAAATCGGCAAATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGG CAACTTGCCGATTTGTCAGAAATGTTCAATTCCGCCAATTTGCAG Right flanking sequence: Indices 13097855 -- 13098354 CAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCCGACTTGCCAGAAA TTTTCAATTCCGGCAATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGT ACAAAACCACCGTAAATCGACACTAAAACTCTAGAATCACCTGAAACTCATTCAAATTGTCTAGA ATTTCACTCTGAAATTCTGAAATATCCGAGAGAATGTAAGCACAGCCAAATATGGCAGTAATGAC GGAGATAGAAGAAGCAAAAATGATGGAATTTAGTAAATATTTGACTTTATTATCCATAATAACTG GCTGGAATGTAAATATAAAACAAGAGTTTGGGTTACTACATACACGAAAATATTCAAAAGGCTGA CTTAGTTTTTATAGCACAATTTAGATGATGAGAGAGAAAAATACTTAAATACCTACTTCCACTCA AGTGGCCGTACTTTCTTTTTCTCTTACAATTAATTGGTGTCATGG Found at i:13097877 original size:34 final size:35 Alignment explanation
Indices: 13097839--13097949 Score: 152 Period size: 34 Copynumber: 3.2 Consensus size: 35 13097829 ATTTACCGGA * * 13097839 AATTTGCCAGAAA-TTTCAATTCCGGCAAATTGTC 1 AATTTGCCAGAAAGTTTCAATTCCGGCAATTTGCC * 13097873 AATTTGTC-GAAAGTTTCAATTCCGGCAATTTGCC 1 AATTTGCCAGAAAGTTTCAATTCCGGCAATTTGCC * * * * 13097907 GACTTGCCAGAAATTTTCAATTCCGGCAATATGCC 1 AATTTGCCAGAAAGTTTCAATTCCGGCAATTTGCC * 13097942 AAGTTGCC 1 AATTTGCC 13097950 CCATAAAAAC Statistics Matches: 65, Mismatches: 10, Indels: 3 0.83 0.13 0.04 Matches are distributed among these distances: 33 4 0.06 34 31 0.48 35 30 0.46 ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32 Consensus pattern (35 bp): AATTTGCCAGAAAGTTTCAATTCCGGCAATTTGCC Left flanking sequence: Indices 13097339 -- 13097838 GCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATA TTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCG GCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCA GAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTG CCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTG ATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATC GGCAAATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCG ATTTGTCAGAAATGTTCAATTCCGCCAATTTGCAGATTTACCGGA Right flanking sequence: Indices 13097950 -- 13098449 CCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACAAAACCACCGTAAATCGACACTAAAACT CTAGAATCACCTGAAACTCATTCAAATTGTCTAGAATTTCACTCTGAAATTCTGAAATATCCGAG AGAATGTAAGCACAGCCAAATATGGCAGTAATGACGGAGATAGAAGAAGCAAAAATGATGGAATT TAGTAAATATTTGACTTTATTATCCATAATAACTGGCTGGAATGTAAATATAAAACAAGAGTTTG GGTTACTACATACACGAAAATATTCAAAAGGCTGACTTAGTTTTTATAGCACAATTTAGATGATG AGAGAGAAAAATACTTAAATACCTACTTCCACTCAAGTGGCCGTACTTTCTTTTTCTCTTACAAT TAATTGGTGTCATGGAACAACAGGGGGGATAAATACACACGAAAATACTTATAAATGGAATGGTA ATTATAATTGAAGAGCGTCGTAAAAGATTTGCTGCAGGAATGCTC Found at i:13097878 original size:80 final size:79 Alignment explanation
Indices: 13097763--13097922 Score: 225 Period size: 79 Copynumber: 2.0 Consensus size: 79 13097753 TCCGGCAAAC * * * 13097763 TGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGTTCAATTCCGCCAATTTGCA 1 TGCCGAAAGTTTCAATTCCGGCAAATTGCCAATTTGTC-GAAAGGTTCAATTCCGCCAATTTGCA * * 13097828 GATTTACCGGAAATT 65 GACTTACCAGAAATT * * * * 13097843 TGCCAGAAA-TTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTTGCC 1 TGCC-GAAAGTTTCAATTCCGGCAAATTGCCAATTTGTCGAAAGGTTCAATTCCGCCAATTTGCA * 13097907 GACTTGCCAGAAATT 65 GACTTACCAGAAATT 13097922 T 1 T 13097923 TCAATTCCGG Statistics Matches: 69, Mismatches: 10, Indels: 3 0.84 0.12 0.04 Matches are distributed among these distances: 79 35 0.51 80 30 0.43 81 4 0.06 ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32 Consensus pattern (79 bp): TGCCGAAAGTTTCAATTCCGGCAAATTGCCAATTTGTCGAAAGGTTCAATTCCGCCAATTTGCAG ACTTACCAGAAATT Left flanking sequence: Indices 13097263 -- 13097762 TAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATTTGTCGAAAG TTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCA GAATGGAAATATTCGGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAG TTTCAATTCCGGCAACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCG GAAATTTGCCAGAAATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAAT TCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCG GCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATA TTCGGAAAATCGGCAAATTCCCGTAAATTTTCAATTCCGGCAAAC Right flanking sequence: Indices 13097923 -- 13098422 TCAATTCCGGCAATATGCCAAGTTGCCCCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACA AAACCACCGTAAATCGACACTAAAACTCTAGAATCACCTGAAACTCATTCAAATTGTCTAGAATT TCACTCTGAAATTCTGAAATATCCGAGAGAATGTAAGCACAGCCAAATATGGCAGTAATGACGGA GATAGAAGAAGCAAAAATGATGGAATTTAGTAAATATTTGACTTTATTATCCATAATAACTGGCT GGAATGTAAATATAAAACAAGAGTTTGGGTTACTACATACACGAAAATATTCAAAAGGCTGACTT AGTTTTTATAGCACAATTTAGATGATGAGAGAGAAAAATACTTAAATACCTACTTCCACTCAAGT GGCCGTACTTTCTTTTTCTCTTACAATTAATTGGTGTCATGGAACAACAGGGGGGATAAATACAC ACGAAAATACTTATAAATGGAATGGTAATTATAATTGAAGAGCGT Found at i:13097932 original size:35 final size:34 Alignment explanation
Indices: 13097842--13097949 Score: 142 Period size: 35 Copynumber: 3.1 Consensus size: 34 13097832 TACCGGAAAT * * * 13097842 TTGCCAGAAATTTCAATTCCGGCAAATTGTCAAT 1 TTGCCAGAAATTTCAATTCCGGCAATTTGCCAAC * * 13097876 TTGTC-GAAAGTTTCAATTCCGGCAATTTGCCGAC 1 TTGCCAGAAA-TTTCAATTCCGGCAATTTGCCAAC * * 13097910 TTGCCAGAAATTTTCAATTCCGGCAATATGCCAAG 1 TTGCCAGAAA-TTTCAATTCCGGCAATTTGCCAAC 13097945 TTGCC 1 TTGCC 13097950 CCATAAAAAC Statistics Matches: 62, Mismatches: 10, Indels: 3 0.83 0.13 0.04 Matches are distributed among these distances: 33 4 0.06 34 28 0.45 35 30 0.48 ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31 Consensus pattern (34 bp): TTGCCAGAAATTTCAATTCCGGCAATTTGCCAAC Left flanking sequence: Indices 13097342 -- 13097841 ATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATGGAAATATTC GGAAAATCGGCAAATTGCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCA ACTTGCCGATTTGTCAGAAATGCTCAATTCCGCCAATTTGCAGATTTACCGGAAATTTGCCAGAA ATTTCAATTCCGGCAAATTGTCAATTTGTCGAAAGTTTCAATTCCGGCAATTCGCTGATTTGCCG GAAATTTTCAATTCCGGCAATTCGCTGATTTGCCGGAAATTTTCAATTCCGGCAATTCGCTGATT TGCCGGAAATTTTCAATTCCGGCAGTTTGCCGATTTGCCAGAATTGAAATATTCGGAAAATCGGC AAATTCCCGTAAATTTTCAATTCCGGCAAACTGCCGAAAGTTTCAATTCCGGCAACTTGCCGATT TGTCAGAAATGTTCAATTCCGCCAATTTGCAGATTTACCGGAAAT Right flanking sequence: Indices 13097950 -- 13098449 CCATAAAAACTGTGAAAACGTTTTCCTCGGGGAGTACAAAACCACCGTAAATCGACACTAAAACT CTAGAATCACCTGAAACTCATTCAAATTGTCTAGAATTTCACTCTGAAATTCTGAAATATCCGAG AGAATGTAAGCACAGCCAAATATGGCAGTAATGACGGAGATAGAAGAAGCAAAAATGATGGAATT TAGTAAATATTTGACTTTATTATCCATAATAACTGGCTGGAATGTAAATATAAAACAAGAGTTTG GGTTACTACATACACGAAAATATTCAAAAGGCTGACTTAGTTTTTATAGCACAATTTAGATGATG AGAGAGAAAAATACTTAAATACCTACTTCCACTCAAGTGGCCGTACTTTCTTTTTCTCTTACAAT TAATTGGTGTCATGGAACAACAGGGGGGATAAATACACACGAAAATACTTATAAATGGAATGGTA ATTATAATTGAAGAGCGTCGTAAAAGATTTGCTGCAGGAATGCTC Found at i:13100296 original size:35 final size:35 Alignment explanation
Indices: 13100234--13100315 Score: 101 Period size: 35 Copynumber: 2.3 Consensus size: 35 13100224 GAAACGAGTT * * ** 13100234 TTTCCGGCAAATCGGCAATTTGCCGGAACTGAAAA 1 TTTCCGGGAAATCGGAAAAATGCCGGAACTGAAAA * * * * 13100269 TTTCCGGGAAATGGGAAAAATGGCGGAATTGAACA 1 TTTCCGGGAAATCGGAAAAATGCCGGAACTGAAAA * 13100304 TTTCCGTGAAAT 1 TTTCCGGGAAAT 13100316 AGCCGGGTTT Statistics Matches: 38, Mismatches: 9, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 35 38 1.00 ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24 Consensus pattern (35 bp): TTTCCGGGAAATCGGAAAAATGCCGGAACTGAAAA Left flanking sequence: Indices 13099734 -- 13100233 ACTGAAATATTTATCATTTTTCACTGAAATTTCTGTCATTCTGCACAATATTGTGTATATATATA TATATACCTGAATCCTCATTACTACTACAATGAAAGCATCGATACGCAGAGTGTGGCTGAATATG AATCCCACTCCTAGCGTGTCCGGTTCGGGCTCCACGATCCTCGACGCCTGCCGAGTCGTCGTTCT CGTGGAATGAAAAGATCGGATCCGATTTCGGTTTGGCTGGAAAAATGTTTCCGCACATAATTTCG ATTTCCGTCGGTAATGCGACTGTCTGAATTGGGACCACATTGATAGTCTTCTTCACTGTGTTATC CTCTTTTTTGAGCTCATTGTAGAGCCATGGATCGCGAAGGACTTGACGACGGTAGTCAGCGAAAT GACGTTCCTGGAAAAGATTTAAAAAAATTTGAATTAAATTTAGAAGGATTTGGCCCTTCAAACCG GATTTTTGAAAATGATCAGAAACAGGGGCGGGTGGGAAACGAGTT Right flanking sequence: Indices 13100316 -- 13100815 AGCCGGGTTTGAAATTTCCGGCAAATCGGCAAATTGCCGGAATTGAAAATTTCCGGCAAACTGGC AAATTGCCGGATTTAGAAATTTCCGGCAAATCAGAAAATTTGCCGGAATTGAAAATTTCTGGCAA AGCGACAAATTGCAGGAATTGAAAATTTCCGGCAAATCGGCAATTTGCCGAAAATCAAAATAACC GGCAAATTAGCAAATTGCCGGAGTTGAAAATTTCCGGCAAACTGACAAATTGCCGGAATTAAAAA CTTCCGGCAAACGGCAAATTGGCAATTTGCCGGAACTGAAAATTTCCGGCAAAGCGACAAATTGC AGGAATTGAAAATTTCCGGCAAATCGGCAATTTGCCGAAAATCAAAATAACCGGCAAATTAGCAA ATTGCCGGAATTGAAAATTTCCGGCAAACTGACAAATTGCCGGAATTGAAAATTTCTAGAGAACC GGCAATTTGCCGAAAATCAAAATAACCGGCAAATCGGAAATTTGC Found at i:13100592 original size:42 final size:43 Alignment explanation
Indices: 13100545--13100636 Score: 128 Period size: 42 Copynumber: 2.2 Consensus size: 43 13100535 TGAAAATTTC * 13100545 CGGCAAACTGACAAATTGCCGGAATTAAAAACTTCCGGCAAA- 1 CGGCAAACTGACAAATTGCCGGAACTAAAAACTTCCGGCAAAG * * * * * 13100587 CGGCAAATTGGCAATTTGCCGGAACTGAAAATTTCCGGCAAAG 1 CGGCAAACTGACAAATTGCCGGAACTAAAAACTTCCGGCAAAG * 13100630 CGACAAA 1 CGGCAAA 13100637 TTGCAGGAAT Statistics Matches: 42, Mismatches: 7, Indels: 1 0.84 0.14 0.02 Matches are distributed among these distances: 42 36 0.86 43 6 0.14 ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17 Consensus pattern (43 bp): CGGCAAACTGACAAATTGCCGGAACTAAAAACTTCCGGCAAAG Left flanking sequence: Indices 13100045 -- 13100544 TTCACTGTGTTATCCTCTTTTTTGAGCTCATTGTAGAGCCATGGATCGCGAAGGACTTGACGACG GTAGTCAGCGAAATGACGTTCCTGGAAAAGATTTAAAAAAATTTGAATTAAATTTAGAAGGATTT GGCCCTTCAAACCGGATTTTTGAAAATGATCAGAAACAGGGGCGGGTGGGAAACGAGTTTTTCCG GCAAATCGGCAATTTGCCGGAACTGAAAATTTCCGGGAAATGGGAAAAATGGCGGAATTGAACAT TTCCGTGAAATAGCCGGGTTTGAAATTTCCGGCAAATCGGCAAATTGCCGGAATTGAAAATTTCC GGCAAACTGGCAAATTGCCGGATTTAGAAATTTCCGGCAAATCAGAAAATTTGCCGGAATTGAAA ATTTCTGGCAAAGCGACAAATTGCAGGAATTGAAAATTTCCGGCAAATCGGCAATTTGCCGAAAA TCAAAATAACCGGCAAATTAGCAAATTGCCGGAGTTGAAAATTTC Right flanking sequence: Indices 13100637 -- 13101136 TTGCAGGAATTGAAAATTTCCGGCAAATCGGCAATTTGCCGAAAATCAAAATAACCGGCAAATTA GCAAATTGCCGGAATTGAAAATTTCCGGCAAACTGACAAATTGCCGGAATTGAAAATTTCTAGAG AACCGGCAATTTGCCGAAAATCAAAATAACCGGCAAATCGGAAATTTGCCGGAATTGAAATTTCA GGGAAATCGGCAAGTTGCCGGAATTGAAAAATTCCGGCAAATCGTCGGAATCGAAAATTTCCGGA AAATGGGCAAATTGCCAGAATTTTTCGGCAAATTGTGGTTTTGCACATTGTTTTTCGAAAATTTC AGAATTTGTCAAAAACTAAAATTTCCGGCAAATCGGTAATTTGCCAAACTTGTCGACAAAAAAAA ATTTGCCGAACCCACCCCAAATTCAGAGAAAACAAAAAAAAATTGGCTAAAACTTGAAAAATCGG GTTGGATTTTTCATTGTTTCGCGATTTGTTTTTCTTTTGTAGTTT Found at i:13100637 original size:77 final size:78 Alignment explanation
Indices: 13100510--13100674 Score: 253 Period size: 77 Copynumber: 2.1 Consensus size: 78 13100500 TCAAAATAAC * ** * * 13100510 CGGCAAATTAGCAAATTGCCGGAGTTGAAAATTTCCGGCAAACTGACAAATTGCCGGAATTAAAA 1 CGGCAAATTGGCAAATTGCCGGAACTGAAAATTTCCGGCAAACCGACAAATTGCAGGAATTAAAA 13100575 ACTTCCGGCAAA- 66 ACTTCCGGCAAAT * * * 13100587 CGGCAAATTGGCAATTTGCCGGAACTGAAAATTTCCGGCAAAGCGACAAATTGCAGGAATTGAAA 1 CGGCAAATTGGCAAATTGCCGGAACTGAAAATTTCCGGCAAACCGACAAATTGCAGGAATTAAAA * 13100652 ATTTCCGGCAAAT 66 ACTTCCGGCAAAT * 13100665 CGGCAATTTG 1 CGGCAAATTG 13100675 CCGAAAATCA Statistics Matches: 77, Mismatches: 10, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 77 68 0.88 78 9 0.12 ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22 Consensus pattern (78 bp): CGGCAAATTGGCAAATTGCCGGAACTGAAAATTTCCGGCAAACCGACAAATTGCAGGAATTAAAA ACTTCCGGCAAAT Left flanking sequence: Indices 13100010 -- 13100509 CGACTGTCTGAATTGGGACCACATTGATAGTCTTCTTCACTGTGTTATCCTCTTTTTTGAGCTCA TTGTAGAGCCATGGATCGCGAAGGACTTGACGACGGTAGTCAGCGAAATGACGTTCCTGGAAAAG ATTTAAAAAAATTTGAATTAAATTTAGAAGGATTTGGCCCTTCAAACCGGATTTTTGAAAATGAT CAGAAACAGGGGCGGGTGGGAAACGAGTTTTTCCGGCAAATCGGCAATTTGCCGGAACTGAAAAT TTCCGGGAAATGGGAAAAATGGCGGAATTGAACATTTCCGTGAAATAGCCGGGTTTGAAATTTCC GGCAAATCGGCAAATTGCCGGAATTGAAAATTTCCGGCAAACTGGCAAATTGCCGGATTTAGAAA TTTCCGGCAAATCAGAAAATTTGCCGGAATTGAAAATTTCTGGCAAAGCGACAAATTGCAGGAAT TGAAAATTTCCGGCAAATCGGCAATTTGCCGAAAATCAAAATAAC Right flanking sequence: Indices 13100675 -- 13101174 CCGAAAATCAAAATAACCGGCAAATTAGCAAATTGCCGGAATTGAAAATTTCCGGCAAACTGACA AATTGCCGGAATTGAAAATTTCTAGAGAACCGGCAATTTGCCGAAAATCAAAATAACCGGCAAAT CGGAAATTTGCCGGAATTGAAATTTCAGGGAAATCGGCAAGTTGCCGGAATTGAAAAATTCCGGC AAATCGTCGGAATCGAAAATTTCCGGAAAATGGGCAAATTGCCAGAATTTTTCGGCAAATTGTGG TTTTGCACATTGTTTTTCGAAAATTTCAGAATTTGTCAAAAACTAAAATTTCCGGCAAATCGGTA ATTTGCCAAACTTGTCGACAAAAAAAAATTTGCCGAACCCACCCCAAATTCAGAGAAAACAAAAA AAAATTGGCTAAAACTTGAAAAATCGGGTTGGATTTTTCATTGTTTCGCGATTTGTTTTTCTTTT GTAGTTTGTCTGAATTTCAGACTATTTTGACACATGGTGCAAGAG Found at i:13100869 original size:27 final size:27 Alignment explanation
Indices: 13100839--13100900 Score: 82 Period size: 27 Copynumber: 2.3 Consensus size: 27 13100829 TCAGGGAAAT * * * 13100839 CGGCAAGTTGCCGGAATTGAAAAATTC 1 CGGCAAATCGCCGGAATCGAAAAATTC * * 13100866 CGGCAAATCGTCGGAATCGAAAATTTC 1 CGGCAAATCGCCGGAATCGAAAAATTC * 13100893 CGGAAAAT 1 CGGCAAAT 13100901 GGGCAAATTG Statistics Matches: 29, Mismatches: 6, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 27 29 1.00 ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21 Consensus pattern (27 bp): CGGCAAATCGCCGGAATCGAAAAATTC Left flanking sequence: Indices 13100339 -- 13100838 AATCGGCAAATTGCCGGAATTGAAAATTTCCGGCAAACTGGCAAATTGCCGGATTTAGAAATTTC CGGCAAATCAGAAAATTTGCCGGAATTGAAAATTTCTGGCAAAGCGACAAATTGCAGGAATTGAA AATTTCCGGCAAATCGGCAATTTGCCGAAAATCAAAATAACCGGCAAATTAGCAAATTGCCGGAG TTGAAAATTTCCGGCAAACTGACAAATTGCCGGAATTAAAAACTTCCGGCAAACGGCAAATTGGC AATTTGCCGGAACTGAAAATTTCCGGCAAAGCGACAAATTGCAGGAATTGAAAATTTCCGGCAAA TCGGCAATTTGCCGAAAATCAAAATAACCGGCAAATTAGCAAATTGCCGGAATTGAAAATTTCCG GCAAACTGACAAATTGCCGGAATTGAAAATTTCTAGAGAACCGGCAATTTGCCGAAAATCAAAAT AACCGGCAAATCGGAAATTTGCCGGAATTGAAATTTCAGGGAAAT Right flanking sequence: Indices 13100901 -- 13101400 GGGCAAATTGCCAGAATTTTTCGGCAAATTGTGGTTTTGCACATTGTTTTTCGAAAATTTCAGAA TTTGTCAAAAACTAAAATTTCCGGCAAATCGGTAATTTGCCAAACTTGTCGACAAAAAAAAATTT GCCGAACCCACCCCAAATTCAGAGAAAACAAAAAAAAATTGGCTAAAACTTGAAAAATCGGGTTG GATTTTTCATTGTTTCGCGATTTGTTTTTCTTTTGTAGTTTGTCTGAATTTCAGACTATTTTGAC ACATGGTGCAAGAGTGTCCCATTTCGGCTTGATCTACGCGTAGATCTACAAAAAAATGCGGGAGA AGAGACGCAGAGTGCTCTCAACTGATTTCGTATGGTTAAGAACGTGCTGACGTCACTTTTTTTTA AATCAAAAAATTCCCGCACTTTTTGTAGATCAAACCGTAATTGGACAGCCTGGCACCACCCACGT GTCTAACCTCTTCTCTTGTCATAAAAACATATCGAACAGGATCTC Found at i:13102911 original size:22 final size:22 Alignment explanation
Indices: 13102884--13102929 Score: 62 Period size: 22 Copynumber: 2.1 Consensus size: 22 13102874 AGAAAAATGC * 13102884 AAAAAAGT-AAAAAATAGTCGAA 1 AAAAAAGTCAAAAAAT-GCCGAA * 13102906 AAAAAATTCAAAAAATGCCGAA 1 AAAAAAGTCAAAAAATGCCGAA 13102928 AA 1 AA 13102930 TTACAAAAAA Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 22 14 0.67 23 7 0.33 ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13 Consensus pattern (22 bp): AAAAAAGTCAAAAAATGCCGAA Left flanking sequence: Indices 13102384 -- 13102883 GCCCACTCCACCTGATTGGTTCAAAAATGGGCGGAGCCAATCGCTGATTGGTCGCAGTTCACATT TTGGAGGGAATTCAAACAGAAAGTGGCCAAAATTTAAAAATCTTGTTTTTTTTTTAAAGTTGAAC ATTTCGCGATTTTTTCGTTTTTTTGTGTGATATTTCCAAATTTCAGACAATTTTTGAATGTTATT TTTTTGCTCCGCCTTCAAGAAACCTACTCAGAAGTTCCACTCGTCTTATACAAATACTTTTCACT ATTCCATAATCGTTGATTGAAGAACGAATCGATTCGAGATTCTCGTTTTGCGATCACTTCGTGAA TGTCTCCAGTGGATTGACTTCTCGATCGTCCTTTACTATGGCCTCGTCGAACTAGAGCACTTTCA GATTTTGCACGACTTTGCTTGACATTGTTTTGACTCTGAAAATTAATATTTAGGTTTTTTGTATG TTTCCATATTTTTTAATGGGTTATTTATGTGATGTAGAAAAATGC Right flanking sequence: Indices 13102930 -- 13103429 TTACAAAAAAATTCGAAATTTTTTGGCATTTTTCCAATTTTTTTGTATTTTTCGAAATTTTTAGC ATTTTTTGAAATTTTTGTATTTTTTGAAAAATAAAAAAAAAAGTCAGAAATGCAAAAAATTTCGA ACAATGCAAAAAATGCATAAAATGCATGCGTTTTTAAATATTTTTTACACACATGAAAAGGGTAT AAATAGAAAAATAAATTTTCGAATTTTTCGAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTT TCGACACATGCAGAAAAATGTCGAAAAATGCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGA AAATGCAGAAAAATGTCGAAAAATTCATGCGTATTTTTCGAAATTTTTTGAGTTTTTCCAATATT TTTTGCATTTTTTTGAAATTTTTTTTTGCATTTTCCGACATTTTTTTTTGCATTTTCCGACATTG TTTGCATTTTTCAAAAAAAAATTTTTTTTAAATTCATTTTCCCCC Found at i:13102970 original size:19 final size:19 Alignment explanation
Indices: 13102941--13103023 Score: 94 Period size: 19 Copynumber: 4.4 Consensus size: 19 13102931 TACAAAAAAA 13102941 TTCGAAATTTTTTGGCATTT 1 TTCGAAA-TTTTTGGCATTT * * * * 13102961 TTCCAATTTTTTTGTATTT 1 TTCGAAATTTTTGGCATTT * 13102980 TTCGAAATTTTTAGCATTT 1 TTCGAAATTTTTGGCATTT * * 13102999 TTTGAAATTTTT-GTATTT 1 TTCGAAATTTTTGGCATTT * 13103017 TTTGAAA 1 TTCGAAA 13103024 AATAAAAAAA Statistics Matches: 53, Mismatches: 10, Indels: 2 0.82 0.15 0.03 Matches are distributed among these distances: 18 12 0.23 19 36 0.68 20 5 0.09 ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59 Consensus pattern (19 bp): TTCGAAATTTTTGGCATTT Left flanking sequence: Indices 13102441 -- 13102940 TTCACATTTTGGAGGGAATTCAAACAGAAAGTGGCCAAAATTTAAAAATCTTGTTTTTTTTTTAA AGTTGAACATTTCGCGATTTTTTCGTTTTTTTGTGTGATATTTCCAAATTTCAGACAATTTTTGA ATGTTATTTTTTTGCTCCGCCTTCAAGAAACCTACTCAGAAGTTCCACTCGTCTTATACAAATAC TTTTCACTATTCCATAATCGTTGATTGAAGAACGAATCGATTCGAGATTCTCGTTTTGCGATCAC TTCGTGAATGTCTCCAGTGGATTGACTTCTCGATCGTCCTTTACTATGGCCTCGTCGAACTAGAG CACTTTCAGATTTTGCACGACTTTGCTTGACATTGTTTTGACTCTGAAAATTAATATTTAGGTTT TTTGTATGTTTCCATATTTTTTAATGGGTTATTTATGTGATGTAGAAAAATGCAAAAAAGTAAAA AATAGTCGAAAAAAAATTCAAAAAATGCCGAAAATTACAAAAAAA Right flanking sequence: Indices 13103024 -- 13103523 AATAAAAAAAAAAGTCAGAAATGCAAAAAATTTCGAACAATGCAAAAAATGCATAAAATGCATGC GTTTTTAAATATTTTTTACACACATGAAAAGGGTATAAATAGAAAAATAAATTTTCGAATTTTTC GAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTTTCGACACATGCAGAAAAATGTCGAAAAAT GCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGAAAATGCAGAAAAATGTCGAAAAATTCATG CGTATTTTTCGAAATTTTTTGAGTTTTTCCAATATTTTTTGCATTTTTTTGAAATTTTTTTTTGC ATTTTCCGACATTTTTTTTTGCATTTTCCGACATTGTTTGCATTTTTCAAAAAAAAATTTTTTTT AAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAAAAATCCCGCATGCATTTTTTTGCATT TTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAAAAATGT Found at i:13103018 original size:18 final size:18 Alignment explanation
Indices: 13102969--13103023 Score: 87 Period size: 18 Copynumber: 3.0 Consensus size: 18 13102959 TTTTCCAATT * 13102969 TTTTTGTATTTTTCGAAA 1 TTTTTGTATTTTTTGAAA * 13102987 TTTTTAGCATTTTTTGAAA 1 TTTTT-GTATTTTTTGAAA 13103006 TTTTTGTATTTTTTGAAA 1 TTTTTGTATTTTTTGAAA 13103024 AATAAAAAAA Statistics Matches: 33, Mismatches: 3, Indels: 2 0.87 0.08 0.05 Matches are distributed among these distances: 18 17 0.52 19 16 0.48 ACGTcount: A:0.24, C:0.04, G:0.11, T:0.62 Consensus pattern (18 bp): TTTTTGTATTTTTTGAAA Left flanking sequence: Indices 13102469 -- 13102968 AAGTGGCCAAAATTTAAAAATCTTGTTTTTTTTTTAAAGTTGAACATTTCGCGATTTTTTCGTTT TTTTGTGTGATATTTCCAAATTTCAGACAATTTTTGAATGTTATTTTTTTGCTCCGCCTTCAAGA AACCTACTCAGAAGTTCCACTCGTCTTATACAAATACTTTTCACTATTCCATAATCGTTGATTGA AGAACGAATCGATTCGAGATTCTCGTTTTGCGATCACTTCGTGAATGTCTCCAGTGGATTGACTT CTCGATCGTCCTTTACTATGGCCTCGTCGAACTAGAGCACTTTCAGATTTTGCACGACTTTGCTT GACATTGTTTTGACTCTGAAAATTAATATTTAGGTTTTTTGTATGTTTCCATATTTTTTAATGGG TTATTTATGTGATGTAGAAAAATGCAAAAAAGTAAAAAATAGTCGAAAAAAAATTCAAAAAATGC CGAAAATTACAAAAAAATTCGAAATTTTTTGGCATTTTTCCAATT Right flanking sequence: Indices 13103024 -- 13103523 AATAAAAAAAAAAGTCAGAAATGCAAAAAATTTCGAACAATGCAAAAAATGCATAAAATGCATGC GTTTTTAAATATTTTTTACACACATGAAAAGGGTATAAATAGAAAAATAAATTTTCGAATTTTTC GAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTTTCGACACATGCAGAAAAATGTCGAAAAAT GCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGAAAATGCAGAAAAATGTCGAAAAATTCATG CGTATTTTTCGAAATTTTTTGAGTTTTTCCAATATTTTTTGCATTTTTTTGAAATTTTTTTTTGC ATTTTCCGACATTTTTTTTTGCATTTTCCGACATTGTTTGCATTTTTCAAAAAAAAATTTTTTTT AAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAAAAATCCCGCATGCATTTTTTTGCATT TTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAAAAATGT Found at i:13103053 original size:18 final size:19 Alignment explanation
Indices: 13103030--13103072 Score: 51 Period size: 19 Copynumber: 2.3 Consensus size: 19 13103020 GAAAAATAAA * 13103030 AAAAAAAGTC-AGAAATGC 1 AAAAAAAGTCGAAAAATGC ** * 13103048 AAAAAATTTCGAACAATGC 1 AAAAAAAGTCGAAAAATGC 13103067 AAAAAA 1 AAAAAA 13103073 TGCATAAAAT Statistics Matches: 20, Mismatches: 4, Indels: 1 0.80 0.16 0.04 Matches are distributed among these distances: 18 8 0.40 19 12 0.60 ACGTcount: A:0.63, C:0.12, G:0.12, T:0.14 Consensus pattern (19 bp): AAAAAAAGTCGAAAAATGC Left flanking sequence: Indices 13102530 -- 13103029 GTTTTTTTGTGTGATATTTCCAAATTTCAGACAATTTTTGAATGTTATTTTTTTGCTCCGCCTTC AAGAAACCTACTCAGAAGTTCCACTCGTCTTATACAAATACTTTTCACTATTCCATAATCGTTGA TTGAAGAACGAATCGATTCGAGATTCTCGTTTTGCGATCACTTCGTGAATGTCTCCAGTGGATTG ACTTCTCGATCGTCCTTTACTATGGCCTCGTCGAACTAGAGCACTTTCAGATTTTGCACGACTTT GCTTGACATTGTTTTGACTCTGAAAATTAATATTTAGGTTTTTTGTATGTTTCCATATTTTTTAA TGGGTTATTTATGTGATGTAGAAAAATGCAAAAAAGTAAAAAATAGTCGAAAAAAAATTCAAAAA ATGCCGAAAATTACAAAAAAATTCGAAATTTTTTGGCATTTTTCCAATTTTTTTGTATTTTTCGA AATTTTTAGCATTTTTTGAAATTTTTGTATTTTTTGAAAAATAAA Right flanking sequence: Indices 13103073 -- 13103572 TGCATAAAATGCATGCGTTTTTAAATATTTTTTACACACATGAAAAGGGTATAAATAGAAAAATA AATTTTCGAATTTTTCGAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTTTCGACACATGCAG AAAAATGTCGAAAAATGCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGAAAATGCAGAAAAA TGTCGAAAAATTCATGCGTATTTTTCGAAATTTTTTGAGTTTTTCCAATATTTTTTGCATTTTTT TGAAATTTTTTTTTGCATTTTCCGACATTTTTTTTTGCATTTTCCGACATTGTTTGCATTTTTCA AAAAAAAATTTTTTTTAAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAAAAATCCCGCA TGCATTTTTTTGCATTTTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAAAAATGTCACA AAATGCAAAAACTTTCGAAAAATGCATGCGTTTTTTTTTAAAACA Found at i:13103322 original size:12 final size:11 Alignment explanation
Indices: 13103307--13103344 Score: 46 Period size: 11 Copynumber: 3.5 Consensus size: 11 13103297 ATTTTTTGAG * 13103307 TTTTTCCAATAT 1 TTTTTGCAAT-T 13103319 TTTTTGC-ATT 1 TTTTTGCAATT * 13103329 TTTTTGAAATT 1 TTTTTGCAATT 13103340 TTTTT 1 TTTTT 13103345 TTGCATTTTC Statistics Matches: 23, Mismatches: 2, Indels: 3 0.82 0.07 0.11 Matches are distributed among these distances: 10 7 0.30 11 10 0.43 12 6 0.26 ACGTcount: A:0.18, C:0.08, G:0.05, T:0.68 Consensus pattern (11 bp): TTTTTGCAATT Left flanking sequence: Indices 13102807 -- 13103306 CTCTGAAAATTAATATTTAGGTTTTTTGTATGTTTCCATATTTTTTAATGGGTTATTTATGTGAT GTAGAAAAATGCAAAAAAGTAAAAAATAGTCGAAAAAAAATTCAAAAAATGCCGAAAATTACAAA AAAATTCGAAATTTTTTGGCATTTTTCCAATTTTTTTGTATTTTTCGAAATTTTTAGCATTTTTT GAAATTTTTGTATTTTTTGAAAAATAAAAAAAAAAGTCAGAAATGCAAAAAATTTCGAACAATGC AAAAAATGCATAAAATGCATGCGTTTTTAAATATTTTTTACACACATGAAAAGGGTATAAATAGA AAAATAAATTTTCGAATTTTTCGAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTTTCGACAC ATGCAGAAAAATGTCGAAAAATGCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGAAAATGCA GAAAAATGTCGAAAAATTCATGCGTATTTTTCGAAATTTTTTGAG Right flanking sequence: Indices 13103345 -- 13103844 TTGCATTTTCCGACATTTTTTTTTGCATTTTCCGACATTGTTTGCATTTTTCAAAAAAAAATTTT TTTTAAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAAAAATCCCGCATGCATTTTTTTG CATTTTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAAAAATGTCACAAAATGCAAAAAC TTTCGAAAAATGCATGCGTTTTTTTTTAAAACAATTTTCTACACAAATGAATAGTGGGAAAATGT ATAAAAATACATTTTCATACATTTTGCCCTAACTCACATCAACCATCGAAGAATTCCGATGACTC TGAATAGTAATCTTCCTTGCCGGTCTCCACGACGAGCATGTACTTCCAGGTGTTGCACCACCCGG TGTTCCAGGCTCATCATCAGCCACCACCTTCGATTTAGCAAGATCCATCGCATATCGGAACCTAT TGGATTCCCATCCGAAAGATCCCAAACGTTTTGCACCTTCGATGC Found at i:13103365 original size:19 final size:20 Alignment explanation
Indices: 13103340--13103394 Score: 78 Period size: 22 Copynumber: 2.7 Consensus size: 20 13103330 TTTTGAAATT 13103340 TTTTTTTGCATTTTCCGACA 1 TTTTTTTGCATTTTCCGACA 13103360 TTTTTTTTTGCATTTTCCGACA 1 --TTTTTTTGCATTTTCCGACA * 13103382 -TTGTTTGCATTTT 1 TTTTTTTGCATTTT 13103395 TCAAAAAAAA Statistics Matches: 32, Mismatches: 1, Indels: 3 0.89 0.03 0.08 Matches are distributed among these distances: 19 12 0.38 22 20 0.62 ACGTcount: A:0.13, C:0.16, G:0.11, T:0.60 Consensus pattern (20 bp): TTTTTTTGCATTTTCCGACA Left flanking sequence: Indices 13102840 -- 13103339 TTCCATATTTTTTAATGGGTTATTTATGTGATGTAGAAAAATGCAAAAAAGTAAAAAATAGTCGA AAAAAAATTCAAAAAATGCCGAAAATTACAAAAAAATTCGAAATTTTTTGGCATTTTTCCAATTT TTTTGTATTTTTCGAAATTTTTAGCATTTTTTGAAATTTTTGTATTTTTTGAAAAATAAAAAAAA AAGTCAGAAATGCAAAAAATTTCGAACAATGCAAAAAATGCATAAAATGCATGCGTTTTTAAATA TTTTTTACACACATGAAAAGGGTATAAATAGAAAAATAAATTTTCGAATTTTTCGAAATTTTTTG CATTTCTCGAAAAATTTTGCATTTTTCGACACATGCAGAAAAATGTCGAAAAATGCAAAGAATGA CGAAAAATGCAAAAAAAATTTCCGAAAATGCAGAAAAATGTCGAAAAATTCATGCGTATTTTTCG AAATTTTTTGAGTTTTTCCAATATTTTTTGCATTTTTTTGAAATT Right flanking sequence: Indices 13103395 -- 13103894 TCAAAAAAAAATTTTTTTTAAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAAAAATCCC GCATGCATTTTTTTGCATTTTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAAAAATGTC ACAAAATGCAAAAACTTTCGAAAAATGCATGCGTTTTTTTTTAAAACAATTTTCTACACAAATGA ATAGTGGGAAAATGTATAAAAATACATTTTCATACATTTTGCCCTAACTCACATCAACCATCGAA GAATTCCGATGACTCTGAATAGTAATCTTCCTTGCCGGTCTCCACGACGAGCATGTACTTCCAGG TGTTGCACCACCCGGTGTTCCAGGCTCATCATCAGCCACCACCTTCGATTTAGCAAGATCCATCG CATATCGGAACCTATTGGATTCCCATCCGAAAGATCCCAAACGTTTTGCACCTTCGATGCACTGC GAAAATGTGCAAAGAGCCCAGAACGCGATTCCTCGAACTGTCAAA Found at i:13103376 original size:22 final size:22 Alignment explanation
Indices: 13103318--13103387 Score: 103 Period size: 22 Copynumber: 3.1 Consensus size: 22 13103308 TTTTCCAATA ** * 13103318 TTTTTTGCATTTTTTTGAAATTT 1 TTTTTTGCA-TTTTCCGACATTT 13103341 TTTTTTGCATTTTCCGACATTT 1 TTTTTTGCATTTTCCGACATTT * 13103363 TTTTTTGCATTTTCCGACATTG 1 TTTTTTGCATTTTCCGACATTT 13103385 TTT 1 TTT 13103388 GCATTTTTCA Statistics Matches: 43, Mismatches: 4, Indels: 1 0.90 0.08 0.02 Matches are distributed among these distances: 22 34 0.79 23 9 0.21 ACGTcount: A:0.14, C:0.13, G:0.10, T:0.63 Consensus pattern (22 bp): TTTTTTGCATTTTCCGACATTT Left flanking sequence: Indices 13102818 -- 13103317 AATATTTAGGTTTTTTGTATGTTTCCATATTTTTTAATGGGTTATTTATGTGATGTAGAAAAATG CAAAAAAGTAAAAAATAGTCGAAAAAAAATTCAAAAAATGCCGAAAATTACAAAAAAATTCGAAA TTTTTTGGCATTTTTCCAATTTTTTTGTATTTTTCGAAATTTTTAGCATTTTTTGAAATTTTTGT ATTTTTTGAAAAATAAAAAAAAAAGTCAGAAATGCAAAAAATTTCGAACAATGCAAAAAATGCAT AAAATGCATGCGTTTTTAAATATTTTTTACACACATGAAAAGGGTATAAATAGAAAAATAAATTT TCGAATTTTTCGAAATTTTTTGCATTTCTCGAAAAATTTTGCATTTTTCGACACATGCAGAAAAA TGTCGAAAAATGCAAAGAATGACGAAAAATGCAAAAAAAATTTCCGAAAATGCAGAAAAATGTCG AAAAATTCATGCGTATTTTTCGAAATTTTTTGAGTTTTTCCAATA Right flanking sequence: Indices 13103388 -- 13103887 GCATTTTTCAAAAAAAAATTTTTTTTAAATTCATTTTCCCCCTATTCGTGTAAAAAATGTAAAAA AAATCCCGCATGCATTTTTTTGCATTTTTCGAAATTTTTCTACATGTGTCAAAAATGTTTAAAAA AAATGTCACAAAATGCAAAAACTTTCGAAAAATGCATGCGTTTTTTTTTAAAACAATTTTCTACA CAAATGAATAGTGGGAAAATGTATAAAAATACATTTTCATACATTTTGCCCTAACTCACATCAAC CATCGAAGAATTCCGATGACTCTGAATAGTAATCTTCCTTGCCGGTCTCCACGACGAGCATGTAC TTCCAGGTGTTGCACCACCCGGTGTTCCAGGCTCATCATCAGCCACCACCTTCGATTTAGCAAGA TCCATCGCATATCGGAACCTATTGGATTCCCATCCGAAAGATCCCAAACGTTTTGCACCTTCGAT GCACTGCGAAAATGTGCAAAGAGCCCAGAACGCGATTCCTCGAAC Found at