TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:474215 original size:31 final size:31 Alignment explanation
Indices: 474143--474222 Score: 132 Period size: 30 Copynumber: 2.6 Consensus size: 31 474133 TAAATATTGG * 474143 CTTGGGTCTGCTAAATATTTAGCATACCCAA 1 CTTAGGTCTGCTAAATATTTAGCATACCCAA * 474174 C-TAGGTCTGCTAAATATTTAGCATACCTAA 1 CTTAGGTCTGCTAAATATTTAGCATACCCAA * 474204 CTTTGGTCTGCTAAATATT 1 CTTAGGTCTGCTAAATATT 474223 GGCTTGGGTC Statistics Matches: 45, Mismatches: 3, Indels: 2 0.90 0.06 0.04 Matches are distributed among these distances: 30 28 0.62 31 17 0.38 ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36 Consensus pattern (31 bp): CTTAGGTCTGCTAAATATTTAGCATACCCAA Left flanking sequence: Indices 473643 -- 474142 ATCCCATGACATCGCTCAATGGACCCTTCAGCTCGTCGCCCTTGCGCTAATTTATTTCTCGGTGC AAATGGTTGAGGTATCGACTGGAACGATCGGAGCTCTGATAATCCAGCAAATTTGCCGCGGATTT TTATTCGCTGGAATTCGGTGGTACTTCGTTGGGCTGAAAGCCGTTTGGAGGAAGTTCTTCCCGGC GAGACGACGATTGTTGAATGAGGAAGAGTATGAGGAGCAGGCGGAGAAGACGACGAAAGAGCAGT TGGCTCAGCTTAGAGAATACTGTAAGAAAGAGGGAAATAGGCCGTGGAAGATTGCCGGAAATGTG AGAAGCGCTAGACGGTAAGAGTATCAGTATAATTTCGTGAGTTGGGTCTGCTAAATATTGGCATG GGTCTGCTAAACATTTAGCATACCTAACATTGGTCTGCTAAATATTTAGCATACCCAACTTTGGT CTGCTAAATATTTAGCATACCCAACTATGGTCTGCTAAATATTGG Right flanking sequence: Indices 474223 -- 474722 GGCTTGGGTCTAATAAATATATAGCATACCCAACTTTGGTCTGCTAAATATTGGCATTGGTCTGC TAAATATTTAGCATACCCAACTTTGGTATGGTCTGCTAAATATTTAGCATACCCAACTTTGGTCT GCTAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTTAGCAGACCAAATCTCCAATTAAA TTCTTCTAATTCATATTTTAAGTCGCAGACTCGCCCGATTCATCGAAGGAGAAGACGATCATATA ACAGAAGACGAGATATACGCTCATGAGCTGACTGGAGACGTTCTTGACGATGAGGACTACGATTT CAACGAGGATTACGGCCTTCGAACGCCGAATGAATCACATTTCGACTTGGAAGACGATGAGGATG GTGCTGAGGAATGGGATGAAGTCGTTGTCAGAAGAAGAGCTTCGGAATATGGGTACGCATCTAGG TCTGCTATTCATCGTAATTTTCCATTTTTTACAGAAGAGACTCCG Found at i:474258 original size:52 final size:52 Alignment explanation
Indices: 474184--474314 Score: 220 Period size: 52 Copynumber: 2.5 Consensus size: 52 474174 CTAGGTCTGC * * 474184 TAAATATTTAGCATACCTAACTTTGGTCTGCTAAATATTGGCTTGGGTCTAA 1 TAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTGGCATGGGTCTAA * * ** 474236 TAAATATATAGCATACCCAACTTTGGTCTGCTAAATATTGGCATTGGTCTGC 1 TAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTGGCATGGGTCTAA 474288 TAAATATTTAGCATACCCAACTTTGGT 1 TAAATATTTAGCATACCCAACTTTGGT 474315 ATGGTCTGCT Statistics Matches: 72, Mismatches: 7, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 52 72 1.00 ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37 Consensus pattern (52 bp): TAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTGGCATGGGTCTAA Left flanking sequence: Indices 473684 -- 474183 TTGCGCTAATTTATTTCTCGGTGCAAATGGTTGAGGTATCGACTGGAACGATCGGAGCTCTGATA ATCCAGCAAATTTGCCGCGGATTTTTATTCGCTGGAATTCGGTGGTACTTCGTTGGGCTGAAAGC CGTTTGGAGGAAGTTCTTCCCGGCGAGACGACGATTGTTGAATGAGGAAGAGTATGAGGAGCAGG CGGAGAAGACGACGAAAGAGCAGTTGGCTCAGCTTAGAGAATACTGTAAGAAAGAGGGAAATAGG CCGTGGAAGATTGCCGGAAATGTGAGAAGCGCTAGACGGTAAGAGTATCAGTATAATTTCGTGAG TTGGGTCTGCTAAATATTGGCATGGGTCTGCTAAACATTTAGCATACCTAACATTGGTCTGCTAA ATATTTAGCATACCCAACTTTGGTCTGCTAAATATTTAGCATACCCAACTATGGTCTGCTAAATA TTGGCTTGGGTCTGCTAAATATTTAGCATACCCAACTAGGTCTGC Right flanking sequence: Indices 474315 -- 474814 ATGGTCTGCTAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTTAGCATACCCAACTTTG GTCTGCTAAATATTTAGCAGACCAAATCTCCAATTAAATTCTTCTAATTCATATTTTAAGTCGCA GACTCGCCCGATTCATCGAAGGAGAAGACGATCATATAACAGAAGACGAGATATACGCTCATGAG CTGACTGGAGACGTTCTTGACGATGAGGACTACGATTTCAACGAGGATTACGGCCTTCGAACGCC GAATGAATCACATTTCGACTTGGAAGACGATGAGGATGGTGCTGAGGAATGGGATGAAGTCGTTG TCAGAAGAAGAGCTTCGGAATATGGGTACGCATCTAGGTCTGCTATTCATCGTAATTTTCCATTT TTTACAGAAGAGACTCCGTACAGTCCGTTCGTGTGCCACGTAGCGTTTCCTCGCGTCTTTTGTCT CCATATCAAGGCCAAAACCATATGAACAGATCACTGGGACCCGGA Found at i:474354 original size:31 final size:31 Alignment explanation
Indices: 474279--474402 Score: 196 Period size: 31 Copynumber: 3.8 Consensus size: 31 474269 AATATTGGCA 474279 TTGGTCTGCTAAATATTTAGCATACCCAACTTT 1 TTGGTCTGCTAAATATTTAGCATACCCAAC--T 474312 GGTATGGTCTGCTAAATATTTAGCATACCCAACT 1 --T-TGGTCTGCTAAATATTTAGCATACCCAACT 474346 TTGGTCTGCTAAATATTTAGCATACCCAACT 1 TTGGTCTGCTAAATATTTAGCATACCCAACT * 474377 TTGGTCTGCTAAATATTTAGCAGACC 1 TTGGTCTGCTAAATATTTAGCATACC 474403 AAATCTCCAA Statistics Matches: 87, Mismatches: 1, Indels: 6 0.93 0.01 0.06 Matches are distributed among these distances: 31 55 0.63 32 1 0.01 34 1 0.01 35 1 0.01 36 29 0.33 ACGTcount: A:0.28, C:0.21, G:0.15, T:0.35 Consensus pattern (31 bp): TTGGTCTGCTAAATATTTAGCATACCCAACT Left flanking sequence: Indices 473779 -- 474278 GCTGGAATTCGGTGGTACTTCGTTGGGCTGAAAGCCGTTTGGAGGAAGTTCTTCCCGGCGAGACG ACGATTGTTGAATGAGGAAGAGTATGAGGAGCAGGCGGAGAAGACGACGAAAGAGCAGTTGGCTC AGCTTAGAGAATACTGTAAGAAAGAGGGAAATAGGCCGTGGAAGATTGCCGGAAATGTGAGAAGC GCTAGACGGTAAGAGTATCAGTATAATTTCGTGAGTTGGGTCTGCTAAATATTGGCATGGGTCTG CTAAACATTTAGCATACCTAACATTGGTCTGCTAAATATTTAGCATACCCAACTTTGGTCTGCTA AATATTTAGCATACCCAACTATGGTCTGCTAAATATTGGCTTGGGTCTGCTAAATATTTAGCATA CCCAACTAGGTCTGCTAAATATTTAGCATACCTAACTTTGGTCTGCTAAATATTGGCTTGGGTCT AATAAATATATAGCATACCCAACTTTGGTCTGCTAAATATTGGCA Right flanking sequence: Indices 474403 -- 474902 AAATCTCCAATTAAATTCTTCTAATTCATATTTTAAGTCGCAGACTCGCCCGATTCATCGAAGGA GAAGACGATCATATAACAGAAGACGAGATATACGCTCATGAGCTGACTGGAGACGTTCTTGACGA TGAGGACTACGATTTCAACGAGGATTACGGCCTTCGAACGCCGAATGAATCACATTTCGACTTGG AAGACGATGAGGATGGTGCTGAGGAATGGGATGAAGTCGTTGTCAGAAGAAGAGCTTCGGAATAT GGGTACGCATCTAGGTCTGCTATTCATCGTAATTTTCCATTTTTTACAGAAGAGACTCCGTACAG TCCGTTCGTGTGCCACGTAGCGTTTCCTCGCGTCTTTTGTCTCCATATCAAGGCCAAAACCATAT GAACAGATCACTGGGACCCGGAATCGGATTCCGAAGAGACTCAACACCACGTCACGGGAACTTCC AATCAGAGCATCGGCCACGCATGCCACGCACCGAGCAGATCTATC Found at i:475756 original size:31 final size:31 Alignment explanation
Indices: 475714--475799 Score: 128 Period size: 31 Copynumber: 2.8 Consensus size: 31 475704 CGTTTGCTTG * 475714 GGTCTGTTAAATATTTACCA-ACCTAACCGTT 1 GGTCTGCTAAATATTTACCAGACCTAA-CGTT * * 475745 GGTCTGCTAAATATTTAGCAGACCTAACTTT 1 GGTCTGCTAAATATTTACCAGACCTAACGTT * 475776 GGTCTGCTAAATATTTAGCAGACC 1 GGTCTGCTAAATATTTACCAGACC 475800 CATAGAACTG Statistics Matches: 51, Mismatches: 3, Indels: 2 0.91 0.05 0.04 Matches are distributed among these distances: 31 45 0.88 32 6 0.12 ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34 Consensus pattern (31 bp): GGTCTGCTAAATATTTACCAGACCTAACGTT Left flanking sequence: Indices 475214 -- 475713 TTTTTGCGACTTTTATTCTTTATTCATATGCCGAAATTCATAAATTACAGGTTTCTCACACACAC AATCAAAATATCTCAGTTTTTCCCTTTCCCCCGATTGATTTCGATGATTTTTCTGCGAATAATAC GGTTTCTTGGATTTTTTTTTTGATTTTAAGCCGATTTTTTTGGTTTTTACCCCGTGTATATCGAT TTTTCAACAATTTTTATTTAGTTGAGATTGTCAAATTTTTCCAGATGAACAGAATGAACGTGAGT TTTTCAACTCCCGTGCAAAACTCAACGGCCAGTCGACTTGCGTTGATTCAACAGGTGAGAAAAAG CCCGAAAATTGAGCGAAAATTTGAATTTTCAGGCCGCTGCCCGCAGTGGAGCTCTCCCGCCAGCC GGACAATACCGTGGTAGCAAACTTTCGCCGTTTGATGTCTCTCAGATGTCGGGAGTCTCGATTTC TATGGTTAATATTTGGAAAATCTATTGTTTAAAAACGTTTGCTTG Right flanking sequence: Indices 475800 -- 476299 CATAGAACTGTTGGCGTGCCCTGAAAACTGGGAAATTTTGATTTTTCGACACTTTCACAAAGTTT GGACTGCTAGAATTTCGGGAATATAGAAAAATGTATATTTTTCAAATTTAAAATCATTAAAATTT GCAGGTTGAACGCGCCAAAATCAACGGACCAGAATTCGTGGAGGAACTCGAATGGCTCCGCCAAC AGACAACATCTCGCTGTTTTCTGGACGCTGAAATGTGGACAAACGAGATTTTGGCCCACCTACCT GATAAATGGTGTGCTCCGAACACGCTAAACCTCTACAATCAAGTCAGCGAGCTTGTCCTCGATAA CACGCGTTCACCAATGGCGTCACCCGCTTCGAATAGCCTTTACGCACCCGGAGAAGATCAAATGC CGACTGTAAAACGGAATCATACGTCGAGATTTGCTCAGTCGTTGATCAAAAATAAGGAGTTTAGA AGGGCGGCGTTTTTCTTGGAGAAAACGATGAATGGCAATAAATTG Found at i:478076 original size:31 final size:31 Alignment explanation
Indices: 478040--478160 Score: 221 Period size: 31 Copynumber: 3.9 Consensus size: 31 478030 ACTGAAAAAA * * 478040 AAATATTTCGCAGACCAAAATTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT * 478071 AAATATTTAGCAGACCAAGGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT 478102 AAATATTTAGCAGACCAAAGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT 478133 AAATATTTAGCAGACCAAAGTTGGGTAT 1 AAATATTTAGCAGACCAAAGTTGGGTAT 478161 CCAATTTTTC Statistics Matches: 86, Mismatches: 4, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 31 86 1.00 ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29 Consensus pattern (31 bp): AAATATTTAGCAGACCAAAGTTGGGTATGCT Left flanking sequence: Indices 477540 -- 478039 TCAGACGATATAAATCTGATTTTTGAAAAAATTGTAACAAAATCTGAAAAAAACTGCAAATTCTG TCACTTTAAGTCATGCTTTATCCGAATTTTTAATTTTTGAAATTTCTAATAGTCCACGTGGAATT GGATCTGCCAATAGAGTTTCGTTTAAAAAAACATGAATTTCTATTAATTTCTTCAAACCAACCAT TTTGGCTGAATTTTTTCCAGAAAGCCCCAAAAATGAGTATTTTTTTGACGAAAACTGAATTTTTG GCCAACATTACAGCTAATAAATTAATTATATAGAAGACCTACCTACTATTTTTTTAATCGGAAAA TCTGAAACTTTCAGCCAAATTTCCACGTGGAGTTAGACGATGAATACTGTTAAAAATAAAAAGAT ATGAAATTCTGTAAATCTTCAAAAAAAATTTACACAATTTTGGCTGACGTCACCAATTTTTCCAA AAACATCTGAAAATTGCTGTATTTTTTGTCGAAAAACTGAAAAAA Right flanking sequence: Indices 478161 -- 478660 CCAATTTTTCCAAAAAAATCTGAAAATTGCTGTATTTTTTGTCGAAAAACTGAAATTTCCAGCCG AAATTCCACATATTTCCACAATTTTTTTCCAGATGCCGACAAATTCGTGACATCTGCCGAAGTGA AGTCACTTTGGATGGGTGACTGGTTCATGACACTGGTACTTCAACGATTCCATCAGCATTCGATG GCAATTCAAAAAGCCGAACAACTGGTGACACGTGGAATGACGGGACTCCCGATGATTATCACAAA AATCGCCGCGTGCTCAAACGCCCGTCACGATCATGATCAAGCGATCTCGAATTTTGAAGATGTTC GGAAAGCTGATCCTTATCGACTTGGAGATCTTCATTTGTTGTCTGATTCACTTTATATACGGAAT GATCAAAAGAAGCTGTCAACGTTGGCTATCGAAGTGTACAAAGTACACAAATTCCGTTGGGAGAC TTGTTGTATTGTTGGTTAGTACCAGGGGTGTGCGGATAACCGATT Found at i:479356 original size:26 final size:26 Alignment explanation
Indices: 479320--479387 Score: 129 Period size: 26 Copynumber: 2.6 Consensus size: 26 479310 AGATTAGCCG 479320 AATTAGCCGTTAGCCGAAAATTTTGA 1 AATTAGCCGTTAGCCGAAAATTTTGA * 479346 AATTAGCCGTTAGCTGAAAATTTTGA 1 AATTAGCCGTTAGCCGAAAATTTTGA 479372 AATTAGCCGTTAGCCG 1 AATTAGCCGTTAGCCG 479388 GTTCTCAAAA Statistics Matches: 40, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 26 40 1.00 ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31 Consensus pattern (26 bp): AATTAGCCGTTAGCCGAAAATTTTGA Left flanking sequence: Indices 478820 -- 479319 TCAGGTTTTGGGTTAATTTTTTCACTGTTATTGAGCAAATTCAGTGATGAACGACTGTTCAAATA GGAAAAAATCATACAAATTCACCACATTTTGTTTTCCAAAAAAAATATATTAGTTGAATTATCCG AAATAACCGATCGGCTAATTCGGCTAACTCGGCTAATATTATCCGAATTAGCCGTTAGCCGACTT TTTGGCAGTTCGGCTAATACGTAGTTATCCGTTAGCCGATTTTGGCCGTTGTTAGCCGAATTCGC CTATCGGCTAATTCGGCTAATTCAACTAACATATTTTTTTGGAAAACAAAATGTGGTGAATTTGT ATGATTTTTTCCTATTTGAACAGTCGTTCATCCCTGAATTTGCTCAATAACAGTGAAAAAATTAA CCCAAAACCTGAATTAACAGAATGGACAAAAAAAGTTTAACCAAATGAATATTTTCCGAATTAGC CGAATTAGCCGAAAATTAGCCGATTTGAATGACTGAGATTAGCCG Right flanking sequence: Indices 479388 -- 479887 GTTCTCAAAAAATCGGCATTAGCCGATTTATCCGTTAGCCGAAAAAATCGGTTATCCGCACACCA CTGTACGGAAAATTACGATTTTTCAAAAATTATTTTAAATTTCGCATAACAAGATAATTTTCAGA ACTGCTGAATTTTTTCCAAAAATATCCGAACATTTTGGGATTTGGCACCACGGATTTTTCGTTTT TCCGTTTTTTTATGGCAAAACGAAAATATTCGATTTTCTCAGAAATTTTTTTTGAGGAACTCTCC TACGGCACCTATCGAACAGACGAAAGTGTTCTAAATTTCTGAAAGTCTAGATTTTCCAATTTTTT TGTAGATATTTTCTATTTTTATTTTAAATTTTGCTTGGAACTTATCAATTTCTTTCTAAACTTTT CGAGATTCGGCTCCAAGGTTTTTGTTTTTCCGATTTTTTTTTTGTTTAAAAAACGAAAAATGTTC GATTTTCTCGGAAATTTTTTTTTCGAGGTTTTTTTTGCCTACGGC Found at i:479743 original size:13 final size:13 Alignment explanation
Indices: 479719--479744 Score: 38 Period size: 13 Copynumber: 2.0 Consensus size: 13 479709 TTTTTGTAGA ** 479719 TATTTTCTATTTT 1 TATTTTAAATTTT 479732 TATTTTAAATTTT 1 TATTTTAAATTTT 479745 GCTTGGAACT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 11 1.00 ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73 Consensus pattern (13 bp): TATTTTAAATTTT Left flanking sequence: Indices 479219 -- 479718 TGAATTAACAGAATGGACAAAAAAAGTTTAACCAAATGAATATTTTCCGAATTAGCCGAATTAGC CGAAAATTAGCCGATTTGAATGACTGAGATTAGCCGAATTAGCCGTTAGCCGAAAATTTTGAAAT TAGCCGTTAGCTGAAAATTTTGAAATTAGCCGTTAGCCGGTTCTCAAAAAATCGGCATTAGCCGA TTTATCCGTTAGCCGAAAAAATCGGTTATCCGCACACCACTGTACGGAAAATTACGATTTTTCAA AAATTATTTTAAATTTCGCATAACAAGATAATTTTCAGAACTGCTGAATTTTTTCCAAAAATATC CGAACATTTTGGGATTTGGCACCACGGATTTTTCGTTTTTCCGTTTTTTTATGGCAAAACGAAAA TATTCGATTTTCTCAGAAATTTTTTTTGAGGAACTCTCCTACGGCACCTATCGAACAGACGAAAG TGTTCTAAATTTCTGAAAGTCTAGATTTTCCAATTTTTTTGTAGA Right flanking sequence: Indices 479745 -- 480244 GCTTGGAACTTATCAATTTCTTTCTAAACTTTTCGAGATTCGGCTCCAAGGTTTTTGTTTTTCCG ATTTTTTTTTTGTTTAAAAAACGAAAAATGTTCGATTTTCTCGGAAATTTTTTTTTCGAGGTTTT TTTTGCCTACGGCAAATATCAAACAGACGAAAGTGTTCTAAATTTCTTTAAAAAATCTAGGTTTT TCAAAAATTTGCCAATTTCTAAAACTTTTCAGGAAAATCGGAAAATCAACAACAAAAAATTTAGA AAATTAACAATATAATTTTTTAAAATCATTTTTTTAAAAATCAAACTGTGTTCCTGTTGATTAAA AACTATAACTTTCTTTTTAAAAAGGTTATATTTTTTGCTTTTATCGAAAAAAATAAGTGAAAAAA AATTTTTTTTTTTCAAATTTCACATTTTTTCCAGAAAATTACAGTTTAAAGAAGTTGGCGGCAAT TGCCGTTCTGCAAAATTGTTTTGGCATTTTGCGGTTTGCCGGATA Found at i:480890 original size:11 final size:11 Alignment explanation
Indices: 480874--480895 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 480864 TGAAATTCGA * 480874 TTTTTTCCCAT 1 TTTTTTACCAT 480885 TTTTTTACCAT 1 TTTTTTACCAT 480896 GTAATAATTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.14, C:0.23, G:0.00, T:0.64 Consensus pattern (11 bp): TTTTTTACCAT Left flanking sequence: Indices 480374 -- 480873 AAGAACATTCATATGATTCGTATAATTTTGCCAATTGAAATTCTGAAATTCTGGATTTCCAAAAA AAAAGCAAAACCAAAGTGTTTGTTAAAAAACTTATTTTCAATTTAAGAATTTTAAACCGATTTAT CTGTAATTTTTCCACCCAGAAATTTCAAATTTACTTTTTTCAGCCAACTACCACGCAATCCGCCG TGACAGTGAGCATGCGATCAAGTTCTTCCAACGAGCTCTCCGTCTTAATCCGGGTCTCGCCGCGC TTTGGGTACTCATCGGACACGAATTCATGGAAATGAAGAATAATGCGGCCGCCTGTGTTTCGTAC AGAAGAGCTATTGGTAGGGAATTTTTAAAAATATTTTTTTTCAGTTTTAGACTAAGACTGATATT TTAAAAAAATTTCTCAAATATCGAAAAAAAAGTGTTTTTTTTCCCTAAAATTATCAGCCTAAATT TTTTTGGTTTAGAAAAAAATCTGATAAAAATTGTCTGAAATTCGA Right flanking sequence: Indices 480896 -- 481395 GTAATAATTTTTCAATATTATCTAAATAACACCAAAAATCTAGATTTTTTAATATTTGGTTGAAA TAAGATGGTTTTGCAGGAATTGATTAAATAGTAAATTTCTTTTAAAAAATCTGGATATTCACGGA AAATATAATTTTTTCTCCGCTTTTAAATAGATTGAAACCATTTTATTTGGTTTTGAGAAAATTTT ATGAAATTCGAATTTTTTTTCTTAAAATGTTTTTATTAAATTTTTAGATTTTCTCTGACTTACAC AAAAATCTAAATTTTGTGAATTTTCAACAATGTATTTATTTGCAGAAATCGATCCAGCAGATCAC CGTGGTTGGTACGGCCTCGGCCAAATGTATGATATCATGAAAATGCCAGCGTATGCTCTATTCTA CTATCAGGAAGCTCAAAAATGCAAACCCCATGATTCTCGGCTTCTCGTGGCTCTCGGTGATATAT ACTCGAAGCTTAATCGCATTGAAGACGCTGAAAAATGTTTCACCG Found at i:481748 original size:31 final size:31 Alignment explanation
Indices: 481713--481813 Score: 188 Period size: 31 Copynumber: 3.3 Consensus size: 31 481703 AGTGAGATAT 481713 TTGGGTATGCTAAATATTTAGCAGACCAAAG 1 TTGGGTATGCTAAATATTTAGCAGACCAAAG 481744 TTGGGTATGCTAAATATTTAGCAGACCAAAG 1 TTGGGTATGCTAAATATTTAGCAGACCAAAG * * 481775 TTGGGTATGCTAAATATTCAGCAAACCAAAG 1 TTGGGTATGCTAAATATTTAGCAGACCAAAG 481806 TTGGGTAT 1 TTGGGTAT 481814 ATTTAGCAGA Statistics Matches: 68, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 31 68 1.00 ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30 Consensus pattern (31 bp): TTGGGTATGCTAAATATTTAGCAGACCAAAG Left flanking sequence: Indices 481213 -- 481712 CAGATCACCGTGGTTGGTACGGCCTCGGCCAAATGTATGATATCATGAAAATGCCAGCGTATGCT CTATTCTACTATCAGGAAGCTCAAAAATGCAAACCCCATGATTCTCGGCTTCTCGTGGCTCTCGG TGATATATACTCGAAGCTTAATCGCATTGAAGACGCTGAAAAATGTTTCACCGGAGCATATTTGT TTGGTGATGTGGAAGGAAACGCTTTATGGAGCCTGGCAAAACTTCATGAACGATATTCGGATGAT AATAAGGCCGCACAAGCTTTTGAAGTTTTTTTGGTGGTTTATGAGCTTGTCACGTCTGCTGAGGA GAAGATTATTTATGCGATCGCGTTTTTGGCGAATCATTTCTTCAAAATTGAAGATTTCGATAAAG CCTCCGAATATGCAACAAAGTGTTTGGCTTTTGAAACGGTAAAATTTGAGGGTTCAGGGTGAAAA TTTGGGAAAAAAATTAAATAAAAATTTAGAGCATTAGTGAGATAT Right flanking sequence: Indices 481814 -- 482313 ATTTAGCAGATCAAATTCTTAAAGAATCCACTTGGATTTTAAACAAAAATATATATTCTGATATT TTCTGGCAAACTTTACTCCTTTGAGAAATTTTTCAATTTCGAAGATACACTATTTTTCAAATATG AAAATGTTCAATATAAGCTCCAAAAACTGATTTGTTCACAATTTCTGTCACAAAGTTTCCTATAT TCTTCTCAATTAAACGACCCAATTTTGCAGCTATGTCAAGAAGGAAATCGTCTGTTTCGTGAAAT TGCCAAAATTCAAGCACGTGAATCTCGATTACCAGTGGAAGAAGCCCCGGGACCATCGAATGCAA GTGCTGCTGGCGGACAAGAAGCTATGGATACTGAAGAAGCTCCACAGGAAGGAGGCGAAGAGGAG ATGTCAGAGGGAGAGGATGATTTCTCGTTTTGATATGTTTGTGATCTCGATTTTTTCCGTATTTT TTTGTACATTTTCAAACACAATTTTTTCTATAAATTTTAATTATT Found at i:486234 original size:21 final size:21 Alignment explanation
Indices: 486210--486261 Score: 62 Period size: 21 Copynumber: 2.5 Consensus size: 21 486200 GAATCCACGT * * 486210 CCACCTCCGCCACGTCCCCAG 1 CCACCTCCACCACCTCCCCAG ** * 486231 CCACCTCCACGTCCTCCCCAT 1 CCACCTCCACCACCTCCCCAG * 486252 CCACCGCCAC 1 CCACCTCCAC 486262 GTCCACCATA Statistics Matches: 25, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 21 25 1.00 ACGTcount: A:0.15, C:0.63, G:0.10, T:0.12 Consensus pattern (21 bp): CCACCTCCACCACCTCCCCAG Left flanking sequence: Indices 485710 -- 486209 ATTAATCGATAATACGGAAAGTTGATTTCAAGTTCTTGTTACCCATCACCCAGATTCCAAACTCC CGATGACTTTTCCACTACCTCAACTGGCCCCCACTGGGTAAGGTCATAATAATGGTAATGGTCTA AAGCCATCGGATTGGTATCTACCTCTTATTAATACAACTACCTATATTTTGTACTATTACCTCTA ATAAATATTTTTATCCCAGAACCGATGTTGGAGATATTGTTTTGGATTTTGAACTTTCGGATTTT CGGAATGTTTTAACGAATCCTATGATTTTCACAAATTCGGTCTGTCAACTGATTAGTAGAATCGA GTGCCACTGACATGCCTAACAATAATGGAAAAACATGATTTCGCAAATAATAACAATTCTTGAGA ATAATATATACAAGTGGTTTATTAAAATTTGTGAAAGAATAAATAAAAATATCAGATATTGAAGG GTTTACTTTCCCCATCCACGTCGTCCTCCTCCATAGAATCCACGT Right flanking sequence: Indices 486262 -- 486761 GTCCACCATATCCACGGCCGCCTCCGCGACCCCATCCACCACGACCTCCCCATCCACCGTAACGC TTCACTCGGGGTGATTCACTGGAAAAAGGTGTATGATTGGAGATTCATTATAAGAAAGAACTTAC TCAGCGGCTCCATTTTCATCAAATGCTCCCATTGGCTCCATATCAATGGAGTCCATAGTTAGCCC ATTTGGAAAAGAGAAAACCGGCAAGGCGGTCAATGCGATAAGACAGAATACAAGTAGCAAGTTGA ATTGTCTCATGGTTGATTTGATTTTTATCAATGGATTTTTATCGCTTATATACCCCCGGAGACGG TGATCTTTAATGATTCGGCGAAGTCTAGGAGAAGGCGTTGGAGGGATGATATACAAAGAAAATAG GAGAGAAAGTGTTGTTCGTCAAAGAATAACATAAACACTGGCAAACTGTGAGATCAGATCAGATC AGATCAAATGAGGAGAGATAAGAAAAGATCAGTTTCAACTTTGTG Found at i:487856 original size:14 final size:14 Alignment explanation
Indices: 487833--487864 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 487823 TGAATCTTGG 487833 AAAT-TTTTTCAAA 1 AAATATTTTTCAAA 487846 AAATATTTTTCAAA 1 AAATATTTTTCAAA * 487860 AGATA 1 AAATA 487865 ACATAAAAAT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 13 4 0.24 14 13 0.76 ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41 Consensus pattern (14 bp): AAATATTTTTCAAA Left flanking sequence: Indices 487333 -- 487832 GGCATTTTTGTAGATATAGGTAGATCAAGCCGAAATGAGAGACTCTGACTCCACGTGGTGAGTCA GCACAATTCCTCAAATTTAATCGTGATTTGTCTGAAATAGAATTTGGAACTGATATTATACTATT GGATAAATATGACCAACGCATTGCGGAGAACCAAACTTCCACATATCCTTTATCTCGCTACTCAG TTAACACTAGTACTCTTGTGACCAGTTATCCAGTTTGGGATTGGTATAGCCATCTAGCATTGTAC AGTGCGTCCAACTTCTATACGACCCCCCTCGAATTTGGAGGTTTGAGACATTCTGAAACTTTTCA TGAAAAACTGCTAATGCTATTCGATTTCAAATGTCAAAAAACCTAAACGAATCAAATTTCATAAA GTTTGCTTCAAAACTGCGCGCGCGGGCTGAAAGTCGAAAAAACGGCCGTCCAACTTCTATACGAC CCCCCTGATTTTTGAAATTTTATTGATAAATACACTGAATCTTGG Right flanking sequence: Indices 487865 -- 488364 ACATAAAAATTATCCAATTAGGTCATTCGCTCATAATAATTTGATATATGTGACGTGGAAGTGTT GGAAAGCAGTCTGGATGGTCCTATACCACATTTTTGTGCTTCAGAGCTCAGTGCTCGGCTCCCAG TTGTTGTTATCTCACGAAACTTTGGGAAGATGTTTTCCTACATGCACAGATTGTGCTTGTAAAGT TTGGCCTGATTTGGTATTGTTTCACTTGTTTTATGGCAACAATAGTATTATTCAGTACATTTAGT TGTTCAAAACACTACAAATATGTTAACATAAACTATTTTTATCATATAACAAGTGAAACAATACC AAATCAGACCAAACTTTACAAGCACAATCTGTGCATGTAGGAAAACATCTTCCCAAAGTTTCGTG AGATAACAACAACTGGGAGCCGAGCACTGAGCTCTGAAGCACAAAAATGTGGTATAGGACCATCC AGACTGCTTCCCAACACTTCCACGTCACATATATTAAATTATTAT Found at i:488420 original size:14 final size:14 Alignment explanation
Indices: 488397--488428 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 488387 ATTTTTATGT * 488397 TATCTTTTGAAAAA 1 TATTTTTTGAAAAA 488411 TATTTTTTGAAAAA 1 TATTTTTTGAAAAA 488425 -ATTT 1 TATTT 488429 CCAAGATTCA Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 13 4 0.24 14 13 0.76 ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50 Consensus pattern (14 bp): TATTTTTTGAAAAA Left flanking sequence: Indices 487897 -- 488396 ATAATAATTTGATATATGTGACGTGGAAGTGTTGGAAAGCAGTCTGGATGGTCCTATACCACATT TTTGTGCTTCAGAGCTCAGTGCTCGGCTCCCAGTTGTTGTTATCTCACGAAACTTTGGGAAGATG TTTTCCTACATGCACAGATTGTGCTTGTAAAGTTTGGCCTGATTTGGTATTGTTTCACTTGTTTT ATGGCAACAATAGTATTATTCAGTACATTTAGTTGTTCAAAACACTACAAATATGTTAACATAAA CTATTTTTATCATATAACAAGTGAAACAATACCAAATCAGACCAAACTTTACAAGCACAATCTGT GCATGTAGGAAAACATCTTCCCAAAGTTTCGTGAGATAACAACAACTGGGAGCCGAGCACTGAGC TCTGAAGCACAAAAATGTGGTATAGGACCATCCAGACTGCTTCCCAACACTTCCACGTCACATAT ATTAAATTATTATGAGCGAATGACCTAATTGGATAATTTTTATGT Right flanking sequence: Indices 488429 -- 488928 CCAAGATTCAATTCAAACTTTATGAAATTTAATTTTTTAGGTTTTTTGACATTTGAAATCGAATG GCATTAGCAGTTTTTCATGAAAAGTTTCAGAATGTCTCAAACCCCCAAATTCGAGGGGGGTCGTA TAGAAGTTGGACGCACTGTATTGTAGAACGATTCGTTTGACGAAATGAATCCTAACTATTGAACA ATCACAAAAATCATTAAAACATTGGGGGCTCCCAGAATCCCCCGCAAAATTTTGATGTTTGATCA TATCAAATCGAATTAAATTCTCAGCCAGACTATCCATTAAAATGTCCGCGGAGCTCAAAAAGATC AATCTCCGATGCTTTCATTTACCTTCCTTCTGTGCCTTATCGCAACAACGTCTGCCTCGTGGTTC CATAAAGCAACTAGTGATGCAGAAATACTGGAAATCACCAATGCTCATATAAAAGCTATCCAAGT TGCGACACGGTCAATGAATGAAACGGCGACTCGGCAACTTTTTAC Found at i:489512 original size:11 final size:11 Alignment explanation
Indices: 489490--489513 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 489480 GGGAACTTGG * 489490 TTTTGAATAAA 1 TTTTGAACAAA * 489501 TTTTTAACAAA 1 TTTTGAACAAA 489512 TT 1 TT 489514 GAACGTGGCT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50 Consensus pattern (11 bp): TTTTGAACAAA Left flanking sequence: Indices 488990 -- 489489 TTAGGCTGAAATGGACTTGTGCGATTTAAAGCACTAAAGACTGTTGGTATATTCTAGAAGTGAGG GATTAGAGAATCACTGTAATGACTACTGTAACGTGTGGTATGTGTGTGTACAGTGTAGTAACTTC ATACATGAGTGTACTGTAGGAGTACAAAAGAAATTACGAATACTGAAGTGCTTACTGTAGAAAAC CTACCGTTCTGAAAAATTATAAATCAGCCAGATCCAAAATTCCAGATCCAAAAATCAATATCAAC ACTGTGATGCTGGTATGGGGCAGCTATGACAGTATCGTACCACTTTACGCGGAATTCTTCAACGG ACGTAACCCACCGTACTCCCAATTTATTGACACTAAGATTTTGATGAAGAAACCCGAACGAACAA TGGATTTGTATGTGACTTTGAGAAAAAGTAGCGAAAGTTCCACCGGATGGACTGCGTTTAATTTC ACATAATTTTTATTTTTTTGAATAATTATTTTTCGGGGAACTTGG Right flanking sequence: Indices 489514 -- 490013 GAACGTGGCTGCAAAACCTTGTAAGATATGAATTCTCATTAGCTGAGAAATTAAAATCACAGGCT TTCGAGAAAAAATTGGCGGGAAATTCGAATTTCTATTTAAAAAGTTTACAATATGCTAAAAATCT AGACAAACTTTAACTTTTCATATAAATTTGGCGGGAAACTCGAATTTAAATTTTTTTTTTTCAAA ATATTTAAACAATTTTTTTTTTCTATTTAGAAGTTCAAATATGAGTTATTTGAAATTTCTTTTTT CTAAAAATTTTGCACGAAATTCAAATTCATGGAGTTCGCTCTGGTTCAGTGGCTGGTCTTCTAAT GAATTATGTTTGTTTTTTCGAACATCGAAAGGAAATAAGCGGGACTCATTTCATTGCTTCCTCCT TCATTGCTTCCTCCTTTTCTCCCTTTCGAATTGTACTACGAGACCCCCTTTGTGCATTATTATTT TACCCCCATTTTCCACCCCAAGACAGTCTCAAGTTATAGGAAATC Found at i:489908 original size:15 final size:15 Alignment explanation
Indices: 489888--489919 Score: 64 Period size: 15 Copynumber: 2.1 Consensus size: 15 489878 CGGGACTCAT 489888 TTCATTGCTTCCTCC 1 TTCATTGCTTCCTCC 489903 TTCATTGCTTCCTCC 1 TTCATTGCTTCCTCC 489918 TT 1 TT 489920 TTCTCCCTTT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 17 1.00 ACGTcount: A:0.06, C:0.38, G:0.06, T:0.50 Consensus pattern (15 bp): TTCATTGCTTCCTCC Left flanking sequence: Indices 489388 -- 489887 TATGTGACTTTGAGAAAAAGTAGCGAAAGTTCCACCGGATGGACTGCGTTTAATTTCACATAATT TTTATTTTTTTGAATAATTATTTTTCGGGGAACTTGGTTTTGAATAAATTTTTAACAAATTGAAC GTGGCTGCAAAACCTTGTAAGATATGAATTCTCATTAGCTGAGAAATTAAAATCACAGGCTTTCG AGAAAAAATTGGCGGGAAATTCGAATTTCTATTTAAAAAGTTTACAATATGCTAAAAATCTAGAC AAACTTTAACTTTTCATATAAATTTGGCGGGAAACTCGAATTTAAATTTTTTTTTTTCAAAATAT TTAAACAATTTTTTTTTTCTATTTAGAAGTTCAAATATGAGTTATTTGAAATTTCTTTTTTCTAA AAATTTTGCACGAAATTCAAATTCATGGAGTTCGCTCTGGTTCAGTGGCTGGTCTTCTAATGAAT TATGTTTGTTTTTTCGAACATCGAAAGGAAATAAGCGGGACTCAT Right flanking sequence: Indices 489920 -- 490419 TTCTCCCTTTCGAATTGTACTACGAGACCCCCTTTGTGCATTATTATTTTACCCCCATTTTCCAC CCCAAGACAGTCTCAAGTTATAGGAAATCTTCACATGATTTGCTCACAGTGCATGCACACAAAAA GTTATAAGATCTGAAGAGAGACGCAGACAGATTATTCAAACAGCAAGGGCTCCCACCACCGGAGA GGATCTGCGGATTCCGCCGTAATTTTACACTATCCGTCGGGGGCCGGACACTACTACACTGCCCT TTCCGCTGAACAGACGTTTCTATTCGTTTTTCATCGATTTTTGCATAAAGTTCGGGTTTAGTGGG TTTAGTAAACCTAAGAATTTCTAGGTTTTTTATGAATTTTAGGTCCTTTTTTTGAATTTATATAA TTTATTTTAATGTAAATACTATGAAATTTTTATTTTGATTTTTTCCGAAAAAAAAATATCAAAAA TTCCAGAAATATTTCAGCCGACCCATAGCCGCCGGGTATAGCACT Found at i:490300 original size:20 final size:19 Alignment explanation
Indices: 490259--490303 Score: 58 Period size: 20 Copynumber: 2.3 Consensus size: 19 490249 GTAAACCTAA 490259 GAATTTCTAGGTTTTTTAT 1 GAATTTCTAGGTTTTTTAT * 490278 GAATTT-TAGGTCCTTTTTTT 1 GAATTTCTAGGT--TTTTTAT 490298 GAATTT 1 GAATTT 490304 ATATAATTTA Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 18 5 0.22 19 6 0.26 20 12 0.52 ACGTcount: A:0.20, C:0.07, G:0.16, T:0.58 Consensus pattern (19 bp): GAATTTCTAGGTTTTTTAT Left flanking sequence: Indices 489759 -- 490258 TGAAATTTCTTTTTTCTAAAAATTTTGCACGAAATTCAAATTCATGGAGTTCGCTCTGGTTCAGT GGCTGGTCTTCTAATGAATTATGTTTGTTTTTTCGAACATCGAAAGGAAATAAGCGGGACTCATT TCATTGCTTCCTCCTTCATTGCTTCCTCCTTTTCTCCCTTTCGAATTGTACTACGAGACCCCCTT TGTGCATTATTATTTTACCCCCATTTTCCACCCCAAGACAGTCTCAAGTTATAGGAAATCTTCAC ATGATTTGCTCACAGTGCATGCACACAAAAAGTTATAAGATCTGAAGAGAGACGCAGACAGATTA TTCAAACAGCAAGGGCTCCCACCACCGGAGAGGATCTGCGGATTCCGCCGTAATTTTACACTATC CGTCGGGGGCCGGACACTACTACACTGCCCTTTCCGCTGAACAGACGTTTCTATTCGTTTTTCAT CGATTTTTGCATAAAGTTCGGGTTTAGTGGGTTTAGTAAACCTAA Right flanking sequence: Indices 490304 -- 490803 ATATAATTTATTTTAATGTAAATACTATGAAATTTTTATTTTGATTTTTTCCGAAAAAAAAATAT CAAAAATTCCAGAAATATTTCAGCCGACCCATAGCCGCCGGGTATAGCACTAGAGCCTCACGGCA GTACATATTTATTTAGAAACTCTAGTATTCCACGTGAAAAAATATATTTAAATATACCAGAAATT TTGAAGGAGTTGACGACTACAGTACTCCTTAAAGGCACACGTTTTTCTGATTTCAAGAAAATTTA TCGGTTCGTGCCGTAGTTTTTGAGAAATCCGAGTGCCGTAGTTTTTGAGAAAAAATTTTCCTTGT GGTTGCCCATATAATTATTTTCATGACGAAAATCTGAAACGATGTTTTATGGGTCTGCTAAATAT TTATCATACCCAACTTTGGTCTGCTAAATATTTAGCATACCCAACTTTGGTCTGCTAAATATTTA GCATACCCAACTTTGGTCTGCTAAATATTTAGCAGACCCATTTGG Found at i:490718 original size:31 final size:31 Alignment explanation
Indices: 490680--490798 Score: 224 Period size: 31 Copynumber: 3.8 Consensus size: 31 490670 ATGTTTTATG * 490680 GGTCTGCTAAATATTTATCATACCCAACTTT 1 GGTCTGCTAAATATTTAGCATACCCAACTTT 490711 GGTCTGCTAAATATTTAGCATACCCAACTTT 1 GGTCTGCTAAATATTTAGCATACCCAACTTT 490742 GGTCTGCTAAATATTTAGCATACCCAACTTT 1 GGTCTGCTAAATATTTAGCATACCCAACTTT * 490773 GGTCTGCTAAATATTTAGCAGACCCA 1 GGTCTGCTAAATATTTAGCATACCCA 490799 TTTGGGATAT Statistics Matches: 86, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 31 86 1.00 ACGTcount: A:0.29, C:0.23, G:0.13, T:0.34 Consensus pattern (31 bp): GGTCTGCTAAATATTTAGCATACCCAACTTT Left flanking sequence: Indices 490180 -- 490679 TTCCGCTGAACAGACGTTTCTATTCGTTTTTCATCGATTTTTGCATAAAGTTCGGGTTTAGTGGG TTTAGTAAACCTAAGAATTTCTAGGTTTTTTATGAATTTTAGGTCCTTTTTTTGAATTTATATAA TTTATTTTAATGTAAATACTATGAAATTTTTATTTTGATTTTTTCCGAAAAAAAAATATCAAAAA TTCCAGAAATATTTCAGCCGACCCATAGCCGCCGGGTATAGCACTAGAGCCTCACGGCAGTACAT ATTTATTTAGAAACTCTAGTATTCCACGTGAAAAAATATATTTAAATATACCAGAAATTTTGAAG GAGTTGACGACTACAGTACTCCTTAAAGGCACACGTTTTTCTGATTTCAAGAAAATTTATCGGTT CGTGCCGTAGTTTTTGAGAAATCCGAGTGCCGTAGTTTTTGAGAAAAAATTTTCCTTGTGGTTGC CCATATAATTATTTTCATGACGAAAATCTGAAACGATGTTTTATG Right flanking sequence: Indices 490799 -- 491298 TTTGGGATATTGAGTTTATCCTGAAATGATGATTTCCTTTGTTTAAATCCACTCAAATTCCGTTT TTTCTCTGAAATCCTCTAATCCCCTGAAAAAAACCTAAAAATATATTTTTTTTACTATATAAATT CGGATTTTTCCAGAAACCCCACATATTTTCGACTTTTCCCGAACTTTTCCCACTCGTTATCTCTA TTTCTCTTCTATTCCCTAGGATATCTCTCCCGCCTGGGAGCTTTTCGAAAGCTCCAGAGCACCTG GGCGGAGCTCCCGCGGCAACTGGATTTTTTACCGTTATTCTTCATTCATTTTTCCAGGACATTAA CAAATTTTCTTGCAGTGAAAATTTTTATTTCAAAAAAAAAGAAAAGAAAGTCAATTTTAGGATGT TATACATCTCCAAAATTCGTTAGTTTTAGCTTTAAAATCAAAGTTTTCATAAAAATTAAATTTGA AATCCCTCCAAAAAATAGTCTGCGCTTCACACTCTCTAACACGTG Found at i:492358 original size:14 final size:14 Alignment explanation
Indices: 492330--492358 Score: 37 Period size: 14 Copynumber: 2.1 Consensus size: 14 492320 ATAAATTTTC * * 492330 TAAATATTTAGTTT 1 TAAATATGTAATTT * 492344 TAAATTTGTAATTT 1 TAAATATGTAATTT 492358 T 1 T 492359 CTCACTTTTT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 14 12 1.00 ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59 Consensus pattern (14 bp): TAAATATGTAATTT Left flanking sequence: Indices 491830 -- 492329 GGAAAATTTGCTGAAAAACCTAAATTTACAGCTCTGGAATTCGACGGGGCCGATGTAAAAGCTCT CTTCAGACGATCGCTGGCTCGTGAACAGCTTGGAAATGTTGGGCCAGCTTTTCAAGACGCAAAAG AGGCTCTGAGGCTCTCGCCAAATGATAAGTGCGTGGAAAAACTAGGCGAAAACCGATGAAAATTA AAAGAAAAATAATTTTTTCTGGCACTTTCCAGTTATATTTCAAAGTTTTTATGACCAAATTTCAG TGAAAAATGCAAAAGTTGCAAATTTTGGGTCTGCTAAATATTTAGCAGACCCAACCTCCCGAAAC TGATTTTTAAAGCTAAAAATTATTAGAATTTTCAGACGTTTCTCTCCGAAATATAGCATGCCAAT AGAAAAATTGACAAAAATCAAGGTTTTCTCATCGAAAATAGCAAAATAACTTTTAAAAATCTACA GAAACTCACAATTTTTGTTTAAAATGCCAACATTTATAAATTTTC Right flanking sequence: Indices 492359 -- 492858 CTCACTTTTTTCTGTGAAAAAATATGCAAAATGAAACTGAAAAATCCACTAAAACATGTTTAAAA ATTTATCTTGAAGAAAAACGTAGGAAATTTCAAATTTGCAGCTAAAAAATCAGCGAAAAAATTTT TTTTTCAAAATTTGAGGAGGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGC AGACCAAAGATAGGTATGCTAAATACTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGA CCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAGGTGGGTATGCTAAATATTTAGCAGACCC AAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATAT GCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCT AAATAATTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGTT Found at i:492482 original size:12 final size:12 Alignment explanation
Indices: 492462--492485 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 492452 TTCAAATTTG * 492462 CAGCTAAAAAAT 1 CAGCGAAAAAAT 492474 CAGCGAAAAAAT 1 CAGCGAAAAAAT 492486 TTTTTTTTCA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12 Consensus pattern (12 bp): CAGCGAAAAAAT Left flanking sequence: Indices 491962 -- 492461 GCTCTGAGGCTCTCGCCAAATGATAAGTGCGTGGAAAAACTAGGCGAAAACCGATGAAAATTAAA AGAAAAATAATTTTTTCTGGCACTTTCCAGTTATATTTCAAAGTTTTTATGACCAAATTTCAGTG AAAAATGCAAAAGTTGCAAATTTTGGGTCTGCTAAATATTTAGCAGACCCAACCTCCCGAAACTG ATTTTTAAAGCTAAAAATTATTAGAATTTTCAGACGTTTCTCTCCGAAATATAGCATGCCAATAG AAAAATTGACAAAAATCAAGGTTTTCTCATCGAAAATAGCAAAATAACTTTTAAAAATCTACAGA AACTCACAATTTTTGTTTAAAATGCCAACATTTATAAATTTTCTAAATATTTAGTTTTAAATTTG TAATTTTCTCACTTTTTTCTGTGAAAAAATATGCAAAATGAAACTGAAAAATCCACTAAAACATG TTTAAAAATTTATCTTGAAGAAAAACGTAGGAAATTTCAAATTTG Right flanking sequence: Indices 492486 -- 492985 TTTTTTTTCAAAATTTGAGGAGGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTT AGCAGACCAAAGATAGGTATGCTAAATACTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGC AGACCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAGGTGGGTATGCTAAATATTTAGCAGA CCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGA TATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTAT GCTAAATAATTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATT AGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGC AGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGTTGGG Found at i:492687 original size:31 final size:31 Alignment explanation
Indices: 492543--492686 Score: 239 Period size: 31 Copynumber: 4.6 Consensus size: 31 492533 ACCCAAGGAA 492543 AAATATTTAGCAGACCAAAGATAGGTATGCT 1 AAATATTTAGCAGACCAAAGATAGGTATGCT * 492574 AAATACTTAGCAGACCAAAGATAGGTATGCT 1 AAATATTTAGCAGACCAAAGATAGGTATGCT ** 492605 AAATATTTAGCAGACCAAAGAAGGGTATGCT 1 AAATATTTAGCAGACCAAAGATAGGTATGCT * * * 492636 AAATATTTAGCAGACCCAAGGTGGGTATGCT 1 AAATATTTAGCAGACCAAAGATAGGTATGCT * 492667 AAATATTTAGCAGACCCAAG 1 AAATATTTAGCAGACCAAAG 492687 GAAAAATATT Statistics Matches: 106, Mismatches: 7, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 31 106 1.00 ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24 Consensus pattern (31 bp): AAATATTTAGCAGACCAAAGATAGGTATGCT Left flanking sequence: Indices 492043 -- 492542 CTGGCACTTTCCAGTTATATTTCAAAGTTTTTATGACCAAATTTCAGTGAAAAATGCAAAAGTTG CAAATTTTGGGTCTGCTAAATATTTAGCAGACCCAACCTCCCGAAACTGATTTTTAAAGCTAAAA ATTATTAGAATTTTCAGACGTTTCTCTCCGAAATATAGCATGCCAATAGAAAAATTGACAAAAAT CAAGGTTTTCTCATCGAAAATAGCAAAATAACTTTTAAAAATCTACAGAAACTCACAATTTTTGT TTAAAATGCCAACATTTATAAATTTTCTAAATATTTAGTTTTAAATTTGTAATTTTCTCACTTTT TTCTGTGAAAAAATATGCAAAATGAAACTGAAAAATCCACTAAAACATGTTTAAAAATTTATCTT GAAGAAAAACGTAGGAAATTTCAAATTTGCAGCTAAAAAATCAGCGAAAAAATTTTTTTTTCAAA ATTTGAGGAGGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAA Right flanking sequence: Indices 492687 -- 493186 GAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCT AAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAA TAATTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATTAGCAGA CCAAAGTTGGGTATGCTAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCA AAGATGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAG GAAAAATATTTAGCAGACCAAAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTT AGCAGACCAAAGATAGGTATGCTAAACATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAA GATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAA Found at i:492696 original size:85 final size:85 Alignment explanation
Indices: 492605--492771 Score: 292 Period size: 85 Copynumber: 2.0 Consensus size: 85 492595 TAGGTATGCT * * * * 492605 AAATATTTAGCAGACCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAGGTGGGTATGCTAAA 1 AAATATTTAGCAGACCAAAGAAAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAA * 492670 TATTTAGCAGACCCAAGGAA 66 TATTTAGCAGACCAAAGGAA * 492690 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAA 1 AAATATTTAGCAGACCAAAGAAAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAA 492755 TATTTAGCAGACCAAAG 66 TATTTAGCAGACCAAAG 492772 ATGGGTATGC Statistics Matches: 76, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 85 76 1.00 ACGTcount: A:0.42, C:0.14, G:0.20, T:0.23 Consensus pattern (85 bp): AAATATTTAGCAGACCAAAGAAAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAA TATTTAGCAGACCAAAGGAA Left flanking sequence: Indices 492105 -- 492604 TTGCAAATTTTGGGTCTGCTAAATATTTAGCAGACCCAACCTCCCGAAACTGATTTTTAAAGCTA AAAATTATTAGAATTTTCAGACGTTTCTCTCCGAAATATAGCATGCCAATAGAAAAATTGACAAA AATCAAGGTTTTCTCATCGAAAATAGCAAAATAACTTTTAAAAATCTACAGAAACTCACAATTTT TGTTTAAAATGCCAACATTTATAAATTTTCTAAATATTTAGTTTTAAATTTGTAATTTTCTCACT TTTTTCTGTGAAAAAATATGCAAAATGAAACTGAAAAATCCACTAAAACATGTTTAAAAATTTAT CTTGAAGAAAAACGTAGGAAATTTCAAATTTGCAGCTAAAAAATCAGCGAAAAAATTTTTTTTTC AAAATTTGAGGAGGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCA AAGATAGGTATGCTAAATACTTAGCAGACCAAAGATAGGTATGCT Right flanking sequence: Indices 492772 -- 493271 ATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAA AAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAA TATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAA TTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCA AAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTAT GCTAAACATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTT AGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGC AGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAA Found at i:492728 original size:31 final size:31 Alignment explanation
Indices: 492690--492835 Score: 255 Period size: 31 Copynumber: 4.7 Consensus size: 31 492680 ACCCAAGGAA * 492690 AAATATTTAGCAGACCAAAGATAGGTATGCT 1 AAATATTTAGCAGACCAAAGATGGGTATGCT * 492721 AAATATTTAGCAGACCAAAGATGGATATGCT 1 AAATATTTAGCAGACCAAAGATGGGTATGCT 492752 AAATATTTAGCAGACCAAAGATGGGTATGCT 1 AAATATTTAGCAGACCAAAGATGGGTATGCT * 492783 AAATAATTAGCAGACCAAAGATGGGTATGCT 1 AAATATTTAGCAGACCAAAGATGGGTATGCT * 492814 AAATAATTAGCAGACCCAAAGA 1 AAATATTTAGCAGA-CCAAAGA 492836 AAAATATTTA Statistics Matches: 110, Mismatches: 4, Indels: 1 0.96 0.03 0.01 Matches are distributed among these distances: 31 103 0.94 32 7 0.06 ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23 Consensus pattern (31 bp): AAATATTTAGCAGACCAAAGATGGGTATGCT Left flanking sequence: Indices 492190 -- 492689 ACGTTTCTCTCCGAAATATAGCATGCCAATAGAAAAATTGACAAAAATCAAGGTTTTCTCATCGA AAATAGCAAAATAACTTTTAAAAATCTACAGAAACTCACAATTTTTGTTTAAAATGCCAACATTT ATAAATTTTCTAAATATTTAGTTTTAAATTTGTAATTTTCTCACTTTTTTCTGTGAAAAAATATG CAAAATGAAACTGAAAAATCCACTAAAACATGTTTAAAAATTTATCTTGAAGAAAAACGTAGGAA ATTTCAAATTTGCAGCTAAAAAATCAGCGAAAAAATTTTTTTTTCAAAATTTGAGGAGGTTGGGT ATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATAC TTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGAAGGGTATGCTAAATATTTA GCAGACCCAAGGTGGGTATGCTAAATATTTAGCAGACCCAAGGAA Right flanking sequence: Indices 492836 -- 493335 AAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAA ATATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATA ATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACC AAAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTA TGCTAAACATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATT TAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAG CAGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGA TGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAAT Found at i:492845 original size:85 final size:84 Alignment explanation
Indices: 492752--492918 Score: 304 Period size: 85 Copynumber: 2.0 Consensus size: 84 492742 TGGATATGCT 492752 AAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAA 1 AAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAA 492817 TAATTAGCAGACCCAAAGAA 66 TAATTAGCAGA-CCAAAGAA * * 492837 AAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAA 1 AAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAA * 492902 TATTTAGCAGACCAAAG 66 TAATTAGCAGACCAAAG 492919 TTGGGTATGC Statistics Matches: 79, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 84 6 0.08 85 73 0.92 ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23 Consensus pattern (84 bp): AAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGATGGGTATGCTAAA TAATTAGCAGACCAAAGAA Left flanking sequence: Indices 492252 -- 492751 CGAAAATAGCAAAATAACTTTTAAAAATCTACAGAAACTCACAATTTTTGTTTAAAATGCCAACA TTTATAAATTTTCTAAATATTTAGTTTTAAATTTGTAATTTTCTCACTTTTTTCTGTGAAAAAAT ATGCAAAATGAAACTGAAAAATCCACTAAAACATGTTTAAAAATTTATCTTGAAGAAAAACGTAG GAAATTTCAAATTTGCAGCTAAAAAATCAGCGAAAAAATTTTTTTTTCAAAATTTGAGGAGGTTG GGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAA TACTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGAAGGGTATGCTAAATAT TTAGCAGACCCAAGGTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCA AAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCT Right flanking sequence: Indices 492919 -- 493418 TTGGGTATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGTTG GGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATGGGTATGCTAAA TATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAACATTTAGCAGA CCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGA TATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAAAAATA TTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAATATTT AGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGC AGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAA Found at i:492865 original size:54 final size:53 Alignment explanation
Indices: 492783--492887 Score: 187 Period size: 54 Copynumber: 2.0 Consensus size: 53 492773 TGGGTATGCT 492783 AAATAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAA 1 AAATAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGA-CCAAAGAA * * 492837 AAATATTTAGCAGACCAAAGTTGGGTATGCTAAATAATTAGCAGACCAAAG 1 AAATAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAG 492888 TTGGGTATGC Statistics Matches: 49, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 53 6 0.12 54 43 0.88 ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21 Consensus pattern (53 bp): AAATAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGAA Left flanking sequence: Indices 492283 -- 492782 CAGAAACTCACAATTTTTGTTTAAAATGCCAACATTTATAAATTTTCTAAATATTTAGTTTTAAA TTTGTAATTTTCTCACTTTTTTCTGTGAAAAAATATGCAAAATGAAACTGAAAAATCCACTAAAA CATGTTTAAAAATTTATCTTGAAGAAAAACGTAGGAAATTTCAAATTTGCAGCTAAAAAATCAGC GAAAAAATTTTTTTTTCAAAATTTGAGGAGGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAA AAATATTTAGCAGACCAAAGATAGGTATGCTAAATACTTAGCAGACCAAAGATAGGTATGCTAAA TATTTAGCAGACCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAGGTGGGTATGCTAAATAT TTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCA AAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCT Right flanking sequence: Indices 492888 -- 493387 TTGGGTATGCTAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCAAAGATG GGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAA TATTTAGCAGACCAAAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGA CCAAAGATAGGTATGCTAAACATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGG TATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTAT GCTAAATAATTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTT AGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGC AGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAAGAAAA Found at i:492878 original size:31 final size:31 Alignment explanation
Indices: 492837--493011 Score: 322 Period size: 31 Copynumber: 5.6 Consensus size: 31 492827 ACCCAAAGAA 492837 AAATATTTAGCAGACCAAAGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT * 492868 AAATAATTAGCAGACCAAAGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT 492899 AAATATTTAGCAGACCAAAGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT * 492930 AAATATTTAGCAGACCAAAGATGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT * 492961 AAATAATTAGCAGACCAAAGTTGGGTATGCT 1 AAATATTTAGCAGACCAAAGTTGGGTATGCT * 492992 AAATATTTAGCAGACCCAAG 1 AAATATTTAGCAGACCAAAG 493012 GAAAAATATT Statistics Matches: 137, Mismatches: 7, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 31 137 1.00 ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26 Consensus pattern (31 bp): AAATATTTAGCAGACCAAAGTTGGGTATGCT Left flanking sequence: Indices 492337 -- 492836 TTAGTTTTAAATTTGTAATTTTCTCACTTTTTTCTGTGAAAAAATATGCAAAATGAAACTGAAAA ATCCACTAAAACATGTTTAAAAATTTATCTTGAAGAAAAACGTAGGAAATTTCAAATTTGCAGCT AAAAAATCAGCGAAAAAATTTTTTTTTCAAAATTTGAGGAGGTTGGGTATGCTAAATATTTAGCA GACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATACTTAGCAGACCAAAGATA GGTATGCTAAATATTTAGCAGACCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAGGTGGGT ATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATAT TTAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTA GCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAA Right flanking sequence: Indices 493012 -- 493511 GAAAAATATTTAGCAGACCAAAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTT AGCAGACCAAAGATAGGTATGCTAAACATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAA GATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGAT GGGTATGCTAAATAATTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAA ATATTTAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATA ATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAAGAAAAATATTTAGCAGACC AAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATATTTAGCAGACCAAA GTTGGGTATGCTAAATATTTAGCAGACCCAAGATTTTCTCACAAT Found at i:493043 original size:54 final size:54 Alignment explanation
Indices: 492961--493173 Score: 384 Period size: 54 Copynumber: 3.9 Consensus size: 54 492951 TGGGTATGCT * * * 492961 AAATAATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAGGAA 1 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCCAAGGAA * 493015 AAATATTTAGCAGACCAAAGATGGGTATGCTAAATATTTAGCAGACCCAAGGAA 1 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCCAAGGAA * 493069 AAATATTTAGCAGACCAAAGATAGGTATGCTAAACATTTAGCAGACCCAAGGAA 1 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCCAAGGAA * 493123 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAG 1 AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCCAAG 493174 ATGGATATGC Statistics Matches: 153, Mismatches: 6, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 54 153 1.00 ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22 Consensus pattern (54 bp): AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCCAAGGAA Left flanking sequence: Indices 492461 -- 492960 GCAGCTAAAAAATCAGCGAAAAAATTTTTTTTTCAAAATTTGAGGAGGTTGGGTATGCTAAATAT TTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATACTTAGCAGACCA AAGATAGGTATGCTAAATATTTAGCAGACCAAAGAAGGGTATGCTAAATATTTAGCAGACCCAAG GTGGGTATGCTAAATATTTAGCAGACCCAAGGAAAAATATTTAGCAGACCAAAGATAGGTATGCT AAATATTTAGCAGACCAAAGATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAA TAATTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAAAAATATTTAGCAGA CCAAAGTTGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCA AAGTTGGGTATGCTAAATATTTAGCAGACCAAAGATGGGTATGCT Right flanking sequence: Indices 493174 -- 493673 ATGGATATGCTAAATATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCCAAAGAA AAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCAAAGATGGATATGCTAAA TATTTAGCAGACCAAAGATGGGTATGCTAAATAATTAGCAGACCAAAGTTGGGTATGCTAAATAT TTAGCAGACCCAAAGAAAAATATTTAGCAGACCAAAGATAGGTATGCTAAATATTTAGCAGACCA AAGATGGGTATGCTAAATATTTAGCAGACCAAAGTTGGGTATGCTAAATATTTAGCAGACCCAAG ATTTTCTCACAATTCCACTTTTAAGCACTTAAAAATTCAATAATTTCACTCAAATTTCTATTTTT CAGAGGAATTGTTGAAGTTCTTCAGCGTCTCGTAAAAGCCAACAATGATAAGATTAAGCAGACCA CTTCACTGGCTAATAAGGTTGGTTTTGTGACCTGAAACCACGAAT Found at