TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:5946292 original size:6 final size:6 Alignment explanation
Indices: 5946277--5946292 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 5946267 GATTATTTAC * 5946277 AACAAT AACAAG AACA 1 AACAAG AACAAG AACA 5946293 TGCAAAACAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.69, C:0.19, G:0.06, T:0.06 Consensus pattern (6 bp): AACAAG Left flanking sequence: Indices 5945777 -- 5946276 GATTTCCATGTCACTAACATTCATCTGACATCCATATGTCACGTAGCACACAGTTCTTCCATTTC CTTGTAAATCTTCTGGATTCAGATATTCTTTTGTATCCTCGATTGACGGAATGATTGCTTTCTGG CGTTGTTTTTTAGTGGATTCTTTTATGAAATCTGATAGTTGAAGTCCGTCTGTAGGAATTGCTCT TTTCGGTTTTACAGCGGCGGAAGTACTGCACCCAGAATGAGCCCTATAGACAGTTGAGCAGGATC CAACACTGCGGAGCCACCACTGGCGGAGCATTTCCCTGTAATTTTTAGTTTCAAGAACTTCAATA AAAGTTTGATAAAAATAATTATTGTCACAATAACCCTCTCTAATTCTAACAAGAAAGATATACAG AAGTTCAACAGTTTTATTGAGCAAATTGAAAAATTCGAGAGAAATGTCTTTGGGAATTGGGAACA CAGATGGCAAACCAGAAAATACTATAACACCCTAGGATTATTTAC Right flanking sequence: Indices 5946293 -- 5946792 TGCAAAACAAGACAGAATATATCAATTTTAAATTTATTTTCCTTTTCCAGCCAAATTAAGAACTC CGCCAACAAGATGAAGACTTCCAGTGACAAGGACGAGGATTTCCTGAGATGCTGCTTGGGATTCG ATGAACTTATACGCACTTGATATGCAGTCAAATACTTTCATTTGATCTTCAGTAACAGATTCCGG TTGATCCAGAGATTCTTTCCATGCCTGCACACATTGATTTGCCTTCTCTGCTTGTTCATCTCGAG AAGCGTTCAGGTTGGCCGAATCAGCAGATTTATCAATGCTCGAGTGGAGTTGAGTTGGACATGAA ACGATTTGGGAGATTCCGAGAGGCTGAATCTTTTTATAGGTTAGAGAATAAATACAAACATCTGA GATATTACCTTCAAATATTTAATCAAAGTAGATGGGCATCTGTCAGCAGTACATTGAAACAGGAG GATCTTCTTCACATTCTCCTTTTTCAAATTCACAATTTCCTCGGC Found at i:5946607 original size:5 final size:5 Alignment explanation
Indices: 5946594--5946609 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 5946584 ATCAATGCTC * 5946594 GAGTG GAGTT GAGTT G 1 GAGTT GAGTT GAGTT G 5946610 GACATGAAAC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.19, C:0.00, G:0.50, T:0.31 Consensus pattern (5 bp): GAGTT Left flanking sequence: Indices 5946094 -- 5946593 CTTCAATAAAAGTTTGATAAAAATAATTATTGTCACAATAACCCTCTCTAATTCTAACAAGAAAG ATATACAGAAGTTCAACAGTTTTATTGAGCAAATTGAAAAATTCGAGAGAAATGTCTTTGGGAAT TGGGAACACAGATGGCAAACCAGAAAATACTATAACACCCTAGGATTATTTACAACAATAACAAG AACATGCAAAACAAGACAGAATATATCAATTTTAAATTTATTTTCCTTTTCCAGCCAAATTAAGA ACTCCGCCAACAAGATGAAGACTTCCAGTGACAAGGACGAGGATTTCCTGAGATGCTGCTTGGGA TTCGATGAACTTATACGCACTTGATATGCAGTCAAATACTTTCATTTGATCTTCAGTAACAGATT CCGGTTGATCCAGAGATTCTTTCCATGCCTGCACACATTGATTTGCCTTCTCTGCTTGTTCATCT CGAGAAGCGTTCAGGTTGGCCGAATCAGCAGATTTATCAATGCTC Right flanking sequence: Indices 5946610 -- 5947109 GACATGAAACGATTTGGGAGATTCCGAGAGGCTGAATCTTTTTATAGGTTAGAGAATAAATACAA ACATCTGAGATATTACCTTCAAATATTTAATCAAAGTAGATGGGCATCTGTCAGCAGTACATTGA AACAGGAGGATCTTCTTCACATTCTCCTTTTTCAAATTCACAATTTCCTCGGCTGCCCACTCGGA GCAGGCTTCCATGCTTTTTGGAGTATGTGCTCCGTCCAAAAGATACGTGACATTACGATCTGTAG AAACGATTTGACTTCTTCCAGGCCAGCGGCAAGATTCTATGGCATCACACATCCACAATGGAACA TTGAAGCCACTGGTGTCAGTGGACAATGGAACTCCTGGCAGTGGGAAGCCACATTTTTCCGCCCA TGCACGAACCAATTGAAGAGCCATGGAAACGTTGGAGAATTGATGTGCTCCACGTATTCCTGGTG ATATATCTCGAGCAAATTGGTAGGCAGATACCGGAGGAGTTTGAA Found at i:5948378 original size:1 final size:1 Alignment explanation
Indices: 5948345--5948360 Score: 25 Period size: 1 Copynumber: 16.0 Consensus size: 1 5948335 GATTTTTCAC * 5948345 TTTTTTCTTTTTTTTT 1 TTTTTTTTTTTTTTTT 5948361 CCAATTTCAT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94 Consensus pattern (1 bp): T Left flanking sequence: Indices 5947845 -- 5948344 ATGATATTCAAAGCGTTAAGATCTTCTGCGGATATGTTCAGAGATTCCAGATACTTTCGGCATTG CGGAAGATTAATCGCTTGCAAGTTCTCCCTTTGAACACGTAACTTTTTGATAGTCGCCGCGTTTG ACTGAAGGCCATTCAAAAGACGAACAGATTCTTCATAGCATGGTACAGCTTTTTCAGATGACATT CTAAGTTGGTTAGCACCGCAAGCTGTGGAGGATGTTGTTGGTAGAAGAATCCTGTTAGTTTGAGG TAAAAGTCGCATCATTTTTAGGTTTTTTTTCGGGGAGATTAATTGGATTATTGAGGTACTTTGAT TAGTTAATTTTCATGCTAGTTTGGAACTAGTAGCAGCTGATTTCAGCCGTAGAAAAAAGAAAAAC TCATTAAAAAATTATTAGTTGATAACATTTCAAGACTGCATTTTGACGTGACGGTGTATGCACAC TTGCGCGTGAAAGCAACTCAAAGAGCGACCACTTCGATTTTTCAC Right flanking sequence: Indices 5948361 -- 5948860 CCAATTTCATAAGTTTTTCATAAAACCTGTTGGATTTTAGAGTTACTCGATAATTTTTCGAATCC AATAAGCGTAAAACCAGTCAAAAACTCAACATAATAAGTAAAACTAACCAAGTCGAGCGAGAATG AAAACCACGAGTAGGGGCAAAAATGGAACTAATGATACGCATTGAGGGGCAAAGATGCATGTGAT AATATGATAATATAACGTAGATTGATCATAGAACATGGTTTAGTGTTTGCGCGGAAGGACATTCT CTCCGTTGTTTGTTCTAGTGAACGTTCAACGCTAAACTGAATCCTCAGCTAGAGGGGCTGGCCAT CAATCTGTTTCTCTAAGTTCGATCCCTCTAGACGTCATATGCCTTCCAAAGTTCTTTTTTCCTCT TTTCGTTCAGTTGTTTTTCCATTTTTCTTCTTAATCCTCCTGCCTTTTCCTTTTTATTTCAAATT GATTTTATCTAGAATTTTCAGATCTTCAGTCGATGTCAAATAAAG Found at i:5949536 original size:5 final size:5 Alignment explanation
Indices: 5949526--5949538 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 5949516 AATAGCATTC 5949526 AAATT AAATT AAA 1 AAATT AAATT AAA 5949539 AAAAAAATAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (5 bp): AAATT Left flanking sequence: Indices 5949026 -- 5949525 AAGAAATTCAGTTAATTTTCAAGGAGAGCTCCTACTCATTATCACCAACTGATTAGCCTGTCAGT CTGGAAAATCATTAAAAGTTATAGCCATTTTTAATTTTCCAGAAAAGATAAGAAAATCGTCGGTA TACTATAAATAAAACGGCTTGATCTCTGTCTTTCTCGCGGCATGTATTCTTTTTTAAATCACATG TTTTCTCTTCAGAATTTTCAAACAATCTTTTATTTTGATTTTTTGGATGCAATAGAAAATTCGAA AATTGAATTTTTCATAAGTTTTAGCCAAAAGCTCTTCCGCTTTTCCTGTAAAAAACCAGAAAATA CCAAATTCCCGCTCCGTGCTCCTTGGCTTTCGCCAAATTTCGAAAATAGTGACGATTTCCGATTT TCAAATAGGATTTTCGAAAATTCTCGATTCTCATCTTTTTTTCTCTTTCGGATTTCTTTTTTGAT TGAAAAATAATAATTACATTTTCCCTATTTTCAGTAATAGCATTC Right flanking sequence: Indices 5949539 -- 5950038 AAAAAAATACTACAGTACTCTAGGCCCTAAAGGCGCAGACACCCATTTCCAAAAAATTGATCTTG GCAGGAGTTTTTCGAATTGTTTGTTATTTTTCGTATCCAAAATTTTCACATCAAAAACGTAACAG CTGAATTATTGAAAATATTTTTTCTGAAACCCGGAAGTTTTGTGAAAATCCAATTTCCTAAAAAA TTCCAAAACACCACATTTTCATCACTCTTCAACACGAGCCTTTTTCTCTTATTTTCAACCTCGCG AACTCGATACATATATCTTTGATCTCAGCTGCTCCTAGGGAGCTAAAACCCAAAACTATTTTTCT TTTTCCTCTTCCTTTCCTCTCTCTTTTTTCCTTCTCGTTTCAACTCAACAAGTATCTTCCGCTGA TCCATATTTTTCTCTGCGACTCTACCATCTCGTATACTATTTCATTGCTCAAGTCGTCTTCGCTT TGACACATTGCTGTGCGCCTACTGCGACGGCGGCTCTCTTTTTTC Found at i:5949880 original size:5 final size:5 Alignment explanation
Indices: 5949865--5949881 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 5949855 TATTTTTCTT 5949865 TTTCC TCTTCC TTTCC T 1 TTTCC T-TTCC TTTCC T 5949882 CTCTCTTTTT Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 5 6 0.55 6 5 0.45 ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59 Consensus pattern (5 bp): TTTCC Left flanking sequence: Indices 5949365 -- 5949864 CGTGCTCCTTGGCTTTCGCCAAATTTCGAAAATAGTGACGATTTCCGATTTTCAAATAGGATTTT CGAAAATTCTCGATTCTCATCTTTTTTTCTCTTTCGGATTTCTTTTTTGATTGAAAAATAATAAT TACATTTTCCCTATTTTCAGTAATAGCATTCAAATTAAATTAAAAAAAAAATACTACAGTACTCT AGGCCCTAAAGGCGCAGACACCCATTTCCAAAAAATTGATCTTGGCAGGAGTTTTTCGAATTGTT TGTTATTTTTCGTATCCAAAATTTTCACATCAAAAACGTAACAGCTGAATTATTGAAAATATTTT TTCTGAAACCCGGAAGTTTTGTGAAAATCCAATTTCCTAAAAAATTCCAAAACACCACATTTTCA TCACTCTTCAACACGAGCCTTTTTCTCTTATTTTCAACCTCGCGAACTCGATACATATATCTTTG ATCTCAGCTGCTCCTAGGGAGCTAAAACCCAAAACTATTTTTCTT Right flanking sequence: Indices 5949882 -- 5950381 CTCTCTTTTTTCCTTCTCGTTTCAACTCAACAAGTATCTTCCGCTGATCCATATTTTTCTCTGCG ACTCTACCATCTCGTATACTATTTCATTGCTCAAGTCGTCTTCGCTTTGACACATTGCTGTGCGC CTACTGCGACGGCGGCTCTCTTTTTTCGTTTTTCGCATTTCCTCCAAAAAAAAAAATCTTCGTTT TTCGCGTCTCCCCGCCGTCTGCCTCCTTGTTATTTATCAATCTTCACGTCAAAACATGTCTGAAA GTTCAGTGATCCAAGGTGAGTAGGAGGATTTCAGTAGGAAAAAAGTTCGAATTAAAAATTGGGTT ACGGTTAAACGAATCCAATTCCAGGCGTGCTCCGCGAGTCTTGTTGGCTTCAAACTGTGGTGTCT GTCTGTGAACACACGTATGTTCTATTTAAAATTTGTTGCGTAGGAAATTTGTTTAATACCAATTT TAAAAAATTACTTTAAAAATTGCGTGAAAATATGTTCATTTCAAA Found at i:5951296 original size:2 final size:2 Alignment explanation
Indices: 5951279--5951304 Score: 38 Period size: 2 Copynumber: 13.0 Consensus size: 2 5951269 GCATAGAAGA * * 5951279 AG AC AG AG AG AC AG AG AG AG AG AG AG 1 AG AG AG AG AG AG AG AG AG AG AG AG AG 5951305 GAACGTCTAA Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 2 20 1.00 ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00 Consensus pattern (2 bp): AG Left flanking sequence: Indices 5950779 -- 5951278 AGTATTCTGCTCCCTCTCTCTCTCGCTTCTAAAGGGTCTCTTTGTCTATACAGTAACTCTATCTA TCAGTTAGACAGTGACAGAACAAAGAGCCATGTCGATAAGGTGCCCTGTGGAGTTTTCAACGACG AAAAAGTACAGTGGCTCTTTCTCTCTTATCTTGACTACCACTACTGCTACCACTACTTCTGATTT ATAATCGAAGTCCAAGTTGGGCGGGATGAAAATGTGAATATAAAAGGTGCATCGGCTGAATTAAA GTTACCACTTTGAGAATTCTTTGCCAAAAAGCTTAACACTCTTCTCTCTGCGCATCTCGTTGAAG GCACCGAAGTTCCAGTTTTCTGTTAACCCCTGTCTTCTCCCCTCTAGCCCTCTCATACAGTGTCA CATTTTTTTGTCGGTGACAGCAGTCATATCGTCAGAGATGCCGAAACTAACTGTACTAATAAATC TTTACTTTTTTGTTGGAAATTGTGAGATTCTCGCAGCATAGAAGA Right flanking sequence: Indices 5951305 -- 5951804 GAACGTCTAAAAGGGGCGGAGCGTTCGTTGGGTTAACTATAAAATCGTCGAGATTGCTGGGGAGA ACTCTTTTCCCGTCCCAATATTTACTTTTGACTTTTAGACACTTTGATCTTCGACCTAACTTCTA AATATTTAGCTTTCTTTCTTTTTTTCAAGTTAAAAAGCACGTTTCTAGGCTCATTTTAAGGTATA TTTGATTAATTTTTTTAAAAATTATACATCCCAAAAATCGTAGGTAACGAATCGTCGCGATCTTC ATATATTCTAAATCTAGATACAGTAACCCATTTTTAATACATTTTTGGAACTTATCCAATTTTGA AAGTTCAAGTTGTCTCCGTCTGTATGCGCAGACACCATACTTCAATTGACCTCTAAAATTTTGTC ACGTGGCGACTTGTTCACATTCCCCTCATGTCTCCACCATGTCTCGAGTTTTTTCATGTCCTTTT CAGTTCAAGTGTTTCATGTCCACTTGAGCGTGAAAAAAGAATTAA Found at i:5951453 original size:4 final size:4 Alignment explanation
Indices: 5951444--5951460 Score: 27 Period size: 4 Copynumber: 4.2 Consensus size: 4 5951434 AAATATTTAG * 5951444 CTTT CTTT CTTT TTTT C 1 CTTT CTTT CTTT CTTT C 5951461 AAGTTAAAAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76 Consensus pattern (4 bp): CTTT Left flanking sequence: Indices 5950944 -- 5951443 TACCACTACTGCTACCACTACTTCTGATTTATAATCGAAGTCCAAGTTGGGCGGGATGAAAATGT GAATATAAAAGGTGCATCGGCTGAATTAAAGTTACCACTTTGAGAATTCTTTGCCAAAAAGCTTA ACACTCTTCTCTCTGCGCATCTCGTTGAAGGCACCGAAGTTCCAGTTTTCTGTTAACCCCTGTCT TCTCCCCTCTAGCCCTCTCATACAGTGTCACATTTTTTTGTCGGTGACAGCAGTCATATCGTCAG AGATGCCGAAACTAACTGTACTAATAAATCTTTACTTTTTTGTTGGAAATTGTGAGATTCTCGCA GCATAGAAGAAGACAGAGAGACAGAGAGAGAGAGAGGAACGTCTAAAAGGGGCGGAGCGTTCGTT GGGTTAACTATAAAATCGTCGAGATTGCTGGGGAGAACTCTTTTCCCGTCCCAATATTTACTTTT GACTTTTAGACACTTTGATCTTCGACCTAACTTCTAAATATTTAG Right flanking sequence: Indices 5951461 -- 5951960 AAGTTAAAAAGCACGTTTCTAGGCTCATTTTAAGGTATATTTGATTAATTTTTTTAAAAATTATA CATCCCAAAAATCGTAGGTAACGAATCGTCGCGATCTTCATATATTCTAAATCTAGATACAGTAA CCCATTTTTAATACATTTTTGGAACTTATCCAATTTTGAAAGTTCAAGTTGTCTCCGTCTGTATG CGCAGACACCATACTTCAATTGACCTCTAAAATTTTGTCACGTGGCGACTTGTTCACATTCCCCT CATGTCTCCACCATGTCTCGAGTTTTTTCATGTCCTTTTCAGTTCAAGTGTTTCATGTCCACTTG AGCGTGAAAAAAGAATTAATTGAGATCTCTCATTTGACCAGTATAAGAGTAGTTAGTAACTTGTG AAATTTAGATTTATTTCGATATTCTAGATACTAGTAGTAAGAACTATGAATTCTGCTAACTCGTG TAAGTTGTTAAAAACTTGCCCTTTTTTATCTGATATTTGTATTTT Found at i:5953607 original size:5 final size:5 Alignment explanation
Indices: 5953597--5953610 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 5953587 TGTAGACAGG 5953597 AAAAT AAAAT AAAA 1 AAAAT AAAAT AAAA 5953611 ACCAAATCAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (5 bp): AAAAT Left flanking sequence: Indices 5953097 -- 5953596 TTGTCCTGATTCATGATCCGACGTTGAATGTGGCTCAAAAGATTGTTGACATCATCAACTCATCA CATTGATTCTTCACTTCCTTATTCTCTTCAAATTTTCATGTTTTATCTGTCGTGTCTCGCTGGCG AGATGGATACTGACCACTTTTATTCGCATTGTTCTTACCCAAATTCTATTTGCAATTATTCTTGA ATGCTCGTTTTTTGAGCACCCACACCCGCCTCCTTTCACCGGTCATTGCTTTGTTCTGCTTTTCC CAGTCTACAAATTACCATGCTCCCGATTCAAAAGTCTGATACTAATCCCAGTTTGGCCTTTAAAA GGTCGTCTTCTACTCGCTAGTATACATGTATAGATGAAAAATAAAAAGCTGAAATATTAAGCAAT GTATTCTGGTTAAATTATAAAGTCAAACGAATGAGATCCAAAGTGGAAACAAGGAGCCACTTCTA GATGAATAATTGAATGAATAGAAGATGCAGAGCGTTGTAGACAGG Right flanking sequence: Indices 5953611 -- 5954110 ACCAAATCAAGAAAGTATATAAAACAGATATGATGCTCAACATCTCTATCGTCGTTGCTTCTTCT CCGGTGGGTAACCTCCGTCGCCATATGATCCGAACATGCCTCCTGGTCCTTGCTGTGGTGGATAA TCACGGCCGGCTGAAATCGAGGAAACATTAATCTCGAACCAGATCCAATAAAACGAAGAATTTTA AAACTTACGCATTCCTCCTGGTGGTCCATTATCACTTTTGAAGATCTGCAATAATCGTTGGACTC CTTCGATCATGTTACTCCGTCCGTGAGATTTTGAAGCATTCCTCCAGGACCTCCAGGTCTCCCGG ACCCCTGGCCCTCCTTGTCCTGGTGGTGGTCCTCCCATTCCTCCATGACCTGGTGGTCCGCCTTG TCCTCCGTGTCCTGGGGGACCTCCCATTCCTCCGTGTCCTGGTGGTCCTCCCATTCCACCTGGTG GTCCTCTAGGATCTCCACCACCTCCCATCAGTGGTGGAGGTCCTG Found at i:5954993 original size:6 final size:6 Alignment explanation
Indices: 5954982--5954994 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5954972 CCCCAAGTCT 5954982 AGAAAA AGAAAA A 1 AGAAAA AGAAAA A 5954995 TAATGCACGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AGAAAA Left flanking sequence: Indices 5954482 -- 5954981 GTTATATTGTTTTTACCCTATTTCACTATATGTCCGCAAAATATTAAAAAAAAAAAATTAACTTA AAAGTATTCCGAAGGCAAAAGAAAAAAGCGATTCCTTTGTTTATTGCTAAAAATTAAACATTCGG TAAATAGAGTTTAACTCTTTGAAAACTTAAAATGAAGAAAATCATCACAAAGATTTTGAAAAGTA TTTCTGAATTTATAGTTATTCGAGAAATATTCAACAAAAAATAATCGGGAATTGGACACAACACA ACTTCAGATTTATCAACTTTTAAAAATTGTAAAAAACTGCGGCGTATATTGCTCAGCTATAGCAT TTTGAAATGTGATTCACAATAGAAAATGATGATATAATCATCTTTGTAAAAGAGAATTTGTGATT ACATTTCCCTTCCCGCCCATAATAATTTTTATAGTAATCAAAACCACCTTTTTCCAATAATAAAT ATTTTTTTAAATAAAATCCCCCGAACCAGGAACTCCCCCAAGTCT Right flanking sequence: Indices 5954995 -- 5955494 TAATGCACGAAACCAAAAAAAGAGCAAAAAAAACATAAGGTAACCTTCTCTGAGCATCTGTGCTT GATAGTCTTGATAAGCGAGCTCCATATCAGATTCCAATCGTCGACGTGATTCGCGAAGCTCTTCG TCGAGTTGAGCACGACGTTTTTGCTCCACAACATACAATTCCTTCCACTTCATTCCATACACATA CTCGAAGCTGTTTGGTGTCGGGAAACGCGGTCCAAGCTCACGTTCCCTAGATTACGAATTACAGT CTTTTGATTATAATAAGAAAGGAAGTAAATAATTAATTGTTAAACTGTTTTAATATCTTCGAAAA AAATATGTTTCAAGACTGTTTTGTTTAAGAAATAACCATAAATGACATAAGCATAAATGAAAAAT TATGAAAATAGCTCAACCCGCTTCCTTAAAATATATTTAAAGTCAAAAATGCTTCAAATCATAAA TAGATTTTCTTAATTTTAAGCAATCAAAAGACAAAATTTTTACTG Found at i:5956800 original size:6 final size:6 Alignment explanation
Indices: 5956786--5956801 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 5956776 CCTGTGAAGT * 5956786 AAATTG AAATAG AAAT 1 AAATAG AAATAG AAAT 5956802 GAGGACAATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25 Consensus pattern (6 bp): AAATAG Left flanking sequence: Indices 5956286 -- 5956785 TTATAGGAAAATGTGAGTAAATTAAAGTTCATTTAATTTCTTGTGACCCTCAGCTTTGAAATTCT ACACATTCTAGTGGTTTCCAAGATTTCTAGCTACAAAAATCCTTATTAAAAAGTTTATGTTCCGA TTCCATTGAAAGTTTCAAAGCGCTCTCCAGTTCATTCTCAGATGATTCAGCTTACTCACGCGGTC AATAAGAACACTTTATCGCGAATAGCAGCCATTGCCTCGTTACAATTCGGCTTTCTTTCAAATTC TACGATTCCTTCTCCGGTTGGTCTTCCCTTTTCGTCGACAATATGAACAGCCCTTTCAACATCTC CAAAATGTGAGAATGCGTGATAGAGCATCTCATTGGAGACAGTTGGCGAGAGTTCTTTAACTCGA ATCGCCGCTCCATGAACTGCGAATCTAACACGTACTTGACGGCCGTGAATGATGCGACCGTCGAT GGCCTCCTTGGCACTTTCAGCGTGAGCACGTGTATCCTGTGAAGT Right flanking sequence: Indices 5956802 -- 5957301 GAGGACAATAAGAAGAAAAATTAAATATAATTTGAAAATGGATCACCTTTCTTTTCGAAAGACTT TAGGGAGATAGTTGAAGCTTCTAGAGAAATCTAAAAGCACGAATGAATGCATAATTAATCGATAA AACAATTAAAAGGCTCAAAAATTAAAAGAAAACTCTAGAAGCTTCATAAATAATATTCTATACGA GATAAACTTCCAAGCTGCGATATAATGCGAAAAATTGAATTTTGTCTACGGAATTTTCTCTCAAA GGAATTTTCCGAAAGTAACCAGACAAGCTCTGAAAATTTTCGGTGACATAGAAAATAGTTTGCTA ATGAATAAACAAAGGAAAAAATAAAGTTATAGGACCTCCAGAACCTGCTGGTTGAAAGTAACAAA ATTATTTCTTTCAACAGGAGACTATTTGAATTAAAGAGATGGATTTTCTACAATAATTGACGTAG ATGCAAACTTCTGTGGACCGTAGAAATCTGAAAACGCGTTGCCGA Found at i:5957844 original size:3 final size:3 Alignment explanation
Indices: 5957836--5957867 Score: 36 Period size: 3 Copynumber: 10.7 Consensus size: 3 5957826 GAAAGAAGTT ** ** 5957836 CCA CCA CCA CCA CTT CTT CCA CCA CCA CCA CC 1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC 5957868 GCTTCTGTGT Statistics Matches: 25, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 25 1.00 ACGTcount: A:0.25, C:0.62, G:0.00, T:0.12 Consensus pattern (3 bp): CCA Left flanking sequence: Indices 5957336 -- 5957835 GTTCACAAGTTTTGATATTTTTAAAAACACGAGTCCACAGGAAGAAGTTACGATTGAGATATACA TTGGGTTGAGTTGCAATTTGAAGTTTAGAAACAGCGAGTAAATACACATAGAGATGGTGGAGTCC ACTAATTTTGAGTTTACGAGAATGAGTCCTTCAGCATTTGATAGTATTTGAGTACCCAATGAGTC CGATTTAAATGTGTACTTTTGGCAACCTCGGCTTCGCGGCGATTAGTGAAAATAGATAGGAGAGG TGTAAATGCAACTTTAAAAAATATTTAAATAAACTAACCAGTCTTAAGAACGCAAATCCTTTTCC AGATAAATAGCACTCAGCAATATCTCCATGTGGAGAGAAAAGTTCTTTTAGCTCGGTTTCTTTAA CTTCATTTGGCAAATTTCCGACGAAAAGCCGACATCTTCCAGTGAACTTCTTTTTTGGAACTTCA TCCATCAGTTGGGACTCAGTGAACGCTGCTCCATTGAAAGAAGTT Right flanking sequence: Indices 5957868 -- 5958367 GCTTCTGTGTCCTCCATTGTTGTCGTACGGCTGTTGAGCCGGAGCAATTCCACGTTCGGCTCCAC CGCGGTTGCCTCCACCTCCGCCACCACTGCGAGCTGCATTGTTGGAATTTCCACGCCTGAAAATA TAAATTGTACAGAATACCAACTAAATATGTAAAGAAAAACTTACTTTTCATCTCCTCCGCGATTT TCCCTCCCTGGTTTGCGATCGTTTTCCGCTTTTGCAACTCTTGATGAATCATCACGACCATTTGA ACGCCTGTTGTCTCTCCTTGCACCACTCATCTTTTAGAAGGTTTTTTGTTATTCTCCTTCTGCAA AATTAAAATAAATAGTTTATTAAAAGAAAGAGATTAGTGAAAAATGAACGGATCGATAGAAAAGG GTGCACACGCGGCTGAACGCAGCGCGGAGAGACGGTCGCGTCTTCCATACTCTGTCTTTGAGTGG TTAGAGAAAGTAGAGAGGGCACAGAGAAAAAGGAGATACCGGAAA Found at i:5958961 original size:6 final size:6 Alignment explanation
Indices: 5958950--5958962 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5958940 CGGCTTGTTC 5958950 AAAATT AAAATT A 1 AAAATT AAAATT A 5958963 GTTTAAAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31 Consensus pattern (6 bp): AAAATT Left flanking sequence: Indices 5958450 -- 5958949 ATTAATCGATGTTTTTTTTAATTAAAAACCCGGTCAAAATTGCAAAAATAAACTAGAAAACAACT ATATTCAAGAAAATAAAAGCCGCAAAAAATTTGTACAAATTCGAATTAATTCATGATGAAAACTT TCAAGGCGCACAGAGTTCATCAAAGCAAGTGTCCTGCCACGACAAGAAAGTTAAAGGAAATTTAA TTAATTCAGTCGACGGGTCTCGTTACGATTACCGTAGTAAAACTGTTTTTGTGTTTCGCAATTTT CTCACGTTTCTCACGTTATTGTGTTCCATCGCTTCTAGCAAAAACGGGCTCAAATTTTCGGAGTC GAAAATAGGCAACGACGTCGAACACGTTCGATTTACACGCTTTAGAAGAAGTGTAAGTTTTTAAT TTTCAAAACAAGAGCCACTATCTGTGAGAGATTGCTAATTGTAAATTAAATTGTTGTTCCATCCA ATAATTCAATCGTTTGCATATTCATAATTTTTTCTCGGCTTGTTC Right flanking sequence: Indices 5958963 -- 5959462 GTTTAAAAAATACCTTTTAATCAAAAGATTCAAATAGTCTCGTCTTTGGAAAAGTGGTTGAATTT TCGAACCGAACCGAACTCTCGACCGAAAAAACAAACTTATTATCTTACTTACTAACTTGTTAGCA ATACTCACAATACGTCGCTTGTTCTCATTCTTATGGCTGTGAGTAAGTGTGGACTAGCCATTGCG CTGGTTGGCCTAGCAGCTGCGGTATTGTCCCGCTTACCGCGTCATTCAAATAAAAAAGTGTTCTC CTTCAATTATCGACCCATTTTTCAGCATGTCGGCGCCGAAGAAACGAAAAAGCGACATTCACGTA AGTTTGAATTTAAATTATTTACAAATTAATTGATGTATTTTGCAGAGCGATGATCGTGATCATGC AGATCACCAAACGAAAAAGGAGAAACATTGGTTCGAGGAGGTATTTATTAATCCCTTTAGATGTA TTATTAACTCGTTTTTTTTTCAGAAATCTGAACAGAATGGCGAGA Found at i:5959039 original size:5 final size:5 Alignment explanation
Indices: 5959029--5959043 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 5959019 GTTGAATTTT 5959029 CGAAC CGAAC CGAAC 1 CGAAC CGAAC CGAAC 5959044 TCTCGACCGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00 Consensus pattern (5 bp): CGAAC Left flanking sequence: Indices 5958529 -- 5959028 AAAAGCCGCAAAAAATTTGTACAAATTCGAATTAATTCATGATGAAAACTTTCAAGGCGCACAGA GTTCATCAAAGCAAGTGTCCTGCCACGACAAGAAAGTTAAAGGAAATTTAATTAATTCAGTCGAC GGGTCTCGTTACGATTACCGTAGTAAAACTGTTTTTGTGTTTCGCAATTTTCTCACGTTTCTCAC GTTATTGTGTTCCATCGCTTCTAGCAAAAACGGGCTCAAATTTTCGGAGTCGAAAATAGGCAACG ACGTCGAACACGTTCGATTTACACGCTTTAGAAGAAGTGTAAGTTTTTAATTTTCAAAACAAGAG CCACTATCTGTGAGAGATTGCTAATTGTAAATTAAATTGTTGTTCCATCCAATAATTCAATCGTT TGCATATTCATAATTTTTTCTCGGCTTGTTCAAAATTAAAATTAGTTTAAAAAATACCTTTTAAT CAAAAGATTCAAATAGTCTCGTCTTTGGAAAAGTGGTTGAATTTT Right flanking sequence: Indices 5959044 -- 5959543 TCTCGACCGAAAAAACAAACTTATTATCTTACTTACTAACTTGTTAGCAATACTCACAATACGTC GCTTGTTCTCATTCTTATGGCTGTGAGTAAGTGTGGACTAGCCATTGCGCTGGTTGGCCTAGCAG CTGCGGTATTGTCCCGCTTACCGCGTCATTCAAATAAAAAAGTGTTCTCCTTCAATTATCGACCC ATTTTTCAGCATGTCGGCGCCGAAGAAACGAAAAAGCGACATTCACGTAAGTTTGAATTTAAATT ATTTACAAATTAATTGATGTATTTTGCAGAGCGATGATCGTGATCATGCAGATCACCAAACGAAA AAGGAGAAACATTGGTTCGAGGAGGTATTTATTAATCCCTTTAGATGTATTATTAACTCGTTTTT TTTTCAGAAATCTGAACAGAATGGCGAGAACCGAAGATCTTCAATTTTCAAAGGATTTCTCAAGA AGGTGAAGAGCTCCACTACTTTGAAGAGCACCAACAAATCTGCCT Found at i:5960283 original size:3 final size:3 Alignment explanation
Indices: 5960268--5960283 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 5960258 TCCAATTGCT * 5960268 GAA GAA GAC GAA GAA G 1 GAA GAA GAA GAA GAA G 5960284 TGTTCGGGGC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.56, C:0.06, G:0.38, T:0.00 Consensus pattern (3 bp): GAA Left flanking sequence: Indices 5959768 -- 5960267 TTCACTTCAAAGATGGATGATGCGATTTCGGTACGAGAAAAGCATAGCAAAATCCACTTCGCAAA CATTTATTTCAGATTGAATCTCGAATGTCTATTGGATCTTGCCACACTATCGATGAAGACTCTGC TTCCATTGGATCCACCTCTGTTTTTTGTACTCCAAGTCGCAATCCATTGATGAGAAATGGATTAC GTATGTCGACTAGAAGTGTTCCTGAAAACCAAGATGATATGCCTCCAGCACTATTCCGATCTCTT TGCAATAGCGCTGTTCGTCGAGTTCCCACTTCAAAATCTGAAGGTGGTGGTACTCCGATGCGGCG TTCCATGCGGATGTCCATTCAGAAACGGAACTTGTCTTCGAAAAACATGGAAGATGTACCAGAAG AAGAAGCATTGACGGTCTCTAATAGTTCGGTAAGAATAAAATTATATTGAAATTACATTATTTAT TCGTTACCACTTTTTTTTCAGATTCGTGTTGATGCTCCAATTGCT Right flanking sequence: Indices 5960284 -- 5960783 TGTTCGGGGCGGCTAAGGAATATTTTGACAACAATGTCACATCACACAATGATTCAGCAGATGAA GGGACATGCTCAATGTCACGACTTTCGACGACGTCCGAAAGAGCTTCTGGTGTTGGAGGATCTAG CATTGTGAGTTTTTTCTGATATCGAAGCGTCTTTGACGAGTGTAATGTATAGTTTCAGGGACGCC GGAGCTCAATTTTCCGAAAAATCTTCCCAGGAAAAAGTGAATCGAAGGATCGGAGAATGAGTGAC AACAACCAAGCGTCGGAGCAGTATATGGACAAAAAATCAAGACGGGCATCTGTAGTCTCTTTCAA CGAGTTCACATCTGTCAGCGGACTCTCTGTAAATGATTCTGCGAGCAAAAATCCGAAAGACTTGA CGGAATCACCTCAGCAACCAAAGCTTCGAAAGAAAACGGCATCTTCTTCTAATCTGTCGCAACGT ATTTCTTCAGTTTTCCGAATGGGCTCAAATTCGACAGTGAAATTG Found at i:5962977 original size:7 final size:6 Alignment explanation
Indices: 5962961--5962975 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 5962951 GCAGATCTTT 5962961 AAATAA AAATAA AAA 1 AAATAA AAATAA AAA 5962976 ATTTTTTATC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13 Consensus pattern (6 bp): AAATAA Left flanking sequence: Indices 5962461 -- 5962960 TAACTCTGCGTCTCTTAATCTTCTATACTATTTTATTATCTTTGTCTCAATTGATAAAAAGAGAA ACAAGTGTCTAATGAGAGAAAGAAATATTTTTGTGTCCATCGGCTCTTCTTTTCTCATCCACTTC AATTCGATGTTTGTCCACCTGTTGTGAGTGTACCACGTGGAAGTCCGAATTCCACGAATTTAATT TTATCAACGGAATATTTGAATTTCAAAAATGTGAGCACACGAAAAAAGTGCAGAAGATAAATTGA AAAAGAGATAGGTAATCTGATATCATAAGTTTCATCTCTTCTCACTTATTTCCTTTGCATTTATC ACTTCAAGTTCATTTTATCACCCTTCTCTCTTATTATTTGTTTTCTTTATCCTGGTTTAACCGAG ATTTGTTTTATGGGATTCTCGCTGATTATGAAGAAAATTACGGGTTTTTTTGCGCCAAAAATACG GTGACGCGATAGATTTTAGTTGAATACAAAAATGCGCAGATCTTT Right flanking sequence: Indices 5962976 -- 5963475 ATTTTTTATCAAAAAAGTACGTCAAATTGAAGCAAATTTCGCAATAACAGAAGTTTGAAGTTACA GTACTCTTTAAATTTAAGTTTAAAGGGTACTGTAACTTCAAACTTCTGTTATTGCGGACTTTGCA TCAAATTCACGCAGTTTTTTGGTAAAAATATAATTAAAACTCAAATATAAGAATAACAAGTTTTA ACTTTAACAAATCAAGAGAAAAATTTTTTATCAAAGAAAATTCCGCAGCAACGAAAGTTTTTAAT GACAGTAATCTTTAATGGCGCGCACATTTTTTGTTAAATACGAAAATTCTCTTATTTAACAAAAA CGTGTCATGTCGAGATCGGGTACCGTACTTTTGGCACAAAATTCCGCGTCTTAGTATATCTTTGG GCTTTTTCAATATGTTCTCTGCGTACTTAGTTTTAGTTTTCACTGATTCCTCAGACAACCACGTT GGGGGTCTAATTAGAAAAGAAGCACTTCTGATTAGAAAATAGGTA Found at i:5963062 original size:6 final size:6 Alignment explanation
Indices: 5963047--5963064 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 5963037 TACAGTACTC * 5963047 TTTAAA TTTAAG TTTAAA 1 TTTAAA TTTAAA TTTAAA 5963065 GGGTACTGTA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50 Consensus pattern (6 bp): TTTAAA Left flanking sequence: Indices 5962547 -- 5963046 GAAATATTTTTGTGTCCATCGGCTCTTCTTTTCTCATCCACTTCAATTCGATGTTTGTCCACCTG TTGTGAGTGTACCACGTGGAAGTCCGAATTCCACGAATTTAATTTTATCAACGGAATATTTGAAT TTCAAAAATGTGAGCACACGAAAAAAGTGCAGAAGATAAATTGAAAAAGAGATAGGTAATCTGAT ATCATAAGTTTCATCTCTTCTCACTTATTTCCTTTGCATTTATCACTTCAAGTTCATTTTATCAC CCTTCTCTCTTATTATTTGTTTTCTTTATCCTGGTTTAACCGAGATTTGTTTTATGGGATTCTCG CTGATTATGAAGAAAATTACGGGTTTTTTTGCGCCAAAAATACGGTGACGCGATAGATTTTAGTT GAATACAAAAATGCGCAGATCTTTAAATAAAAATAAAAAATTTTTTATCAAAAAAGTACGTCAAA TTGAAGCAAATTTCGCAATAACAGAAGTTTGAAGTTACAGTACTC Right flanking sequence: Indices 5963065 -- 5963564 GGGTACTGTAACTTCAAACTTCTGTTATTGCGGACTTTGCATCAAATTCACGCAGTTTTTTGGTA AAAATATAATTAAAACTCAAATATAAGAATAACAAGTTTTAACTTTAACAAATCAAGAGAAAAAT TTTTTATCAAAGAAAATTCCGCAGCAACGAAAGTTTTTAATGACAGTAATCTTTAATGGCGCGCA CATTTTTTGTTAAATACGAAAATTCTCTTATTTAACAAAAACGTGTCATGTCGAGATCGGGTACC GTACTTTTGGCACAAAATTCCGCGTCTTAGTATATCTTTGGGCTTTTTCAATATGTTCTCTGCGT ACTTAGTTTTAGTTTTCACTGATTCCTCAGACAACCACGTTGGGGGTCTAATTAGAAAAGAAGCA CTTCTGATTAGAAAATAGGTATTTCTAATAATAAAATCCCTGATCCTCATTAAACCCATCAATCA ATTCAAACTACACAAATAATATGAAAGATGCAAATTATGTAAATG Found at i:5963403 original size:6 final size:6 Alignment explanation
Indices: 5963392--5963405 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5963382 CTCTGCGTAC 5963392 TTAGTT TTAGTT TT 1 TTAGTT TTAGTT TT 5963406 CACTGATTCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71 Consensus pattern (6 bp): TTAGTT Left flanking sequence: Indices 5962892 -- 5963391 GGGTTTTTTTGCGCCAAAAATACGGTGACGCGATAGATTTTAGTTGAATACAAAAATGCGCAGAT CTTTAAATAAAAATAAAAAATTTTTTATCAAAAAAGTACGTCAAATTGAAGCAAATTTCGCAATA ACAGAAGTTTGAAGTTACAGTACTCTTTAAATTTAAGTTTAAAGGGTACTGTAACTTCAAACTTC TGTTATTGCGGACTTTGCATCAAATTCACGCAGTTTTTTGGTAAAAATATAATTAAAACTCAAAT ATAAGAATAACAAGTTTTAACTTTAACAAATCAAGAGAAAAATTTTTTATCAAAGAAAATTCCGC AGCAACGAAAGTTTTTAATGACAGTAATCTTTAATGGCGCGCACATTTTTTGTTAAATACGAAAA TTCTCTTATTTAACAAAAACGTGTCATGTCGAGATCGGGTACCGTACTTTTGGCACAAAATTCCG CGTCTTAGTATATCTTTGGGCTTTTTCAATATGTTCTCTGCGTAC Right flanking sequence: Indices 5963406 -- 5963905 CACTGATTCCTCAGACAACCACGTTGGGGGTCTAATTAGAAAAGAAGCACTTCTGATTAGAAAAT AGGTATTTCTAATAATAAAATCCCTGATCCTCATTAAACCCATCAATCAATTCAAACTACACAAA TAATATGAAAGATGCAAATTATGTAAATGTCAATCTAATTCATTTCATTCCACGAACACATACAA ATACACTCCAGTTGTTTTATGTGTAATCTTTTCGGGAATGAGATTCTCCATCTGGCGGAAGCTTA TAAAAACGAATCCTTTCAATTTCACCTTTTGTATACAAAAAACTGACTGACTATGAGAGAAAGAA TAGAAAGCGGGCGAATCTAAAGGACCCCATTTAAAATAAATGACCCCATGTAAAATTGTATGAAA GCTCATTCCTTTGATATTCAGTCATTTTATTGTTAGCACTAAAGGTGATTTTAAACCGTTTCCCC CACTGGCGCTACTCCAGCACCTTTAAGCCTTCCACGCAACTATTT Found at i:5963982 original size:4 final size:4 Alignment explanation
Indices: 5963967--5963984 Score: 29 Period size: 4 Copynumber: 4.5 Consensus size: 4 5963957 CATACCTTGT * 5963967 AGGC ACGC AGGC AGGC AG 1 AGGC AGGC AGGC AGGC AG 5963985 AGGACGCCTA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.28, C:0.28, G:0.44, T:0.00 Consensus pattern (4 bp): AGGC Left flanking sequence: Indices 5963467 -- 5963966 AAATAGGTATTTCTAATAATAAAATCCCTGATCCTCATTAAACCCATCAATCAATTCAAACTACA CAAATAATATGAAAGATGCAAATTATGTAAATGTCAATCTAATTCATTTCATTCCACGAACACAT ACAAATACACTCCAGTTGTTTTATGTGTAATCTTTTCGGGAATGAGATTCTCCATCTGGCGGAAG CTTATAAAAACGAATCCTTTCAATTTCACCTTTTGTATACAAAAAACTGACTGACTATGAGAGAA AGAATAGAAAGCGGGCGAATCTAAAGGACCCCATTTAAAATAAATGACCCCATGTAAAATTGTAT GAAAGCTCATTCCTTTGATATTCAGTCATTTTATTGTTAGCACTAAAGGTGATTTTAAACCGTTT CCCCCACTGGCGCTACTCCAGCACCTTTAAGCCTTCCACGCAACTATTTGTCTTTTAATATCTTT CACGACAAAGTAGACTATCATCACGGCAATTTAGACATACCTTGT Right flanking sequence: Indices 5963985 -- 5964484 AGGACGCCTACCACATATCTTAATGCATTTGGTCACACTTTCATAGTGAACAATTTTGAGAGGTT TTGTTCAAACTACAGTAACCCTGCAATTTAAAGGCACATATGTCTTTGTGGTATGACCGATGATC TTTGCCATCAATTGACATCTTCATCTTCTGTACCTTTAAAATCCCATTTCTTCTGACCATCCCAT CAATCAGTCACCGACAAATACGGTCATGCCTATCCTTAGTGATTCTGATTCTATTCTCCGATAAC CCTGGTCATAAATCCCCACTAAACTTTCTCAAAACCTTCCGTCCATTCCCCTTCACCCTCTATCT ATCTCTATTTTTTTTGTTGCGACCTGATAGTCACTGTGATAACCAACAGTTCTCGCTCTCTTTCA CCCCTCTCAACCTCTCACCGATCTCAAAAAAATTGTCAATTACATTGCAAATATGACTGCCTAGA AACTCTTCAAGAGTGCACACTATTTTCAACTGCTTCTCCATAATT Found at i:5964141 original size:6 final size:6 Alignment explanation
Indices: 5964130--5964142 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5964120 CATCAATTGA 5964130 CATCTT CATCTT C 1 CATCTT CATCTT C 5964143 TGTACCTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46 Consensus pattern (6 bp): CATCTT Left flanking sequence: Indices 5963630 -- 5964129 TTTCGGGAATGAGATTCTCCATCTGGCGGAAGCTTATAAAAACGAATCCTTTCAATTTCACCTTT TGTATACAAAAAACTGACTGACTATGAGAGAAAGAATAGAAAGCGGGCGAATCTAAAGGACCCCA TTTAAAATAAATGACCCCATGTAAAATTGTATGAAAGCTCATTCCTTTGATATTCAGTCATTTTA TTGTTAGCACTAAAGGTGATTTTAAACCGTTTCCCCCACTGGCGCTACTCCAGCACCTTTAAGCC TTCCACGCAACTATTTGTCTTTTAATATCTTTCACGACAAAGTAGACTATCATCACGGCAATTTA GACATACCTTGTAGGCACGCAGGCAGGCAGAGGACGCCTACCACATATCTTAATGCATTTGGTCA CACTTTCATAGTGAACAATTTTGAGAGGTTTTGTTCAAACTACAGTAACCCTGCAATTTAAAGGC ACATATGTCTTTGTGGTATGACCGATGATCTTTGCCATCAATTGA Right flanking sequence: Indices 5964143 -- 5964642 TGTACCTTTAAAATCCCATTTCTTCTGACCATCCCATCAATCAGTCACCGACAAATACGGTCATG CCTATCCTTAGTGATTCTGATTCTATTCTCCGATAACCCTGGTCATAAATCCCCACTAAACTTTC TCAAAACCTTCCGTCCATTCCCCTTCACCCTCTATCTATCTCTATTTTTTTTGTTGCGACCTGAT AGTCACTGTGATAACCAACAGTTCTCGCTCTCTTTCACCCCTCTCAACCTCTCACCGATCTCAAA AAAATTGTCAATTACATTGCAAATATGACTGCCTAGAAACTCTTCAAGAGTGCACACTATTTTCA ACTGCTTCTCCATAATTTTTGCATCTCTTCTCGACACCCATCGTCTGCATCGAAAATCAATTGTG AACACGTCCATACACACGTGTCTGCGGGTCTCTGATCCTACTACTCTCTCCTCCCGTGCTTCGTG TTCTTCTTCCCGCCGGGAGCTCAAAAACGCCGCCGCCGCCGCTGT Found at i:5964230 original size:6 final size:6 Alignment explanation
Indices: 5964219--5964236 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 5964209 CTATCCTTAG 5964219 TGATTC TGATTC T-ATTC T 1 TGATTC TGATTC TGATTC T 5964237 CCGATAACCC Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 5 5 0.42 6 7 0.58 ACGTcount: A:0.17, C:0.17, G:0.11, T:0.56 Consensus pattern (6 bp): TGATTC Left flanking sequence: Indices 5963719 -- 5964218 TGAGAGAAAGAATAGAAAGCGGGCGAATCTAAAGGACCCCATTTAAAATAAATGACCCCATGTAA AATTGTATGAAAGCTCATTCCTTTGATATTCAGTCATTTTATTGTTAGCACTAAAGGTGATTTTA AACCGTTTCCCCCACTGGCGCTACTCCAGCACCTTTAAGCCTTCCACGCAACTATTTGTCTTTTA ATATCTTTCACGACAAAGTAGACTATCATCACGGCAATTTAGACATACCTTGTAGGCACGCAGGC AGGCAGAGGACGCCTACCACATATCTTAATGCATTTGGTCACACTTTCATAGTGAACAATTTTGA GAGGTTTTGTTCAAACTACAGTAACCCTGCAATTTAAAGGCACATATGTCTTTGTGGTATGACCG ATGATCTTTGCCATCAATTGACATCTTCATCTTCTGTACCTTTAAAATCCCATTTCTTCTGACCA TCCCATCAATCAGTCACCGACAAATACGGTCATGCCTATCCTTAG Right flanking sequence: Indices 5964237 -- 5964736 CCGATAACCCTGGTCATAAATCCCCACTAAACTTTCTCAAAACCTTCCGTCCATTCCCCTTCACC CTCTATCTATCTCTATTTTTTTTGTTGCGACCTGATAGTCACTGTGATAACCAACAGTTCTCGCT CTCTTTCACCCCTCTCAACCTCTCACCGATCTCAAAAAAATTGTCAATTACATTGCAAATATGAC TGCCTAGAAACTCTTCAAGAGTGCACACTATTTTCAACTGCTTCTCCATAATTTTTGCATCTCTT CTCGACACCCATCGTCTGCATCGAAAATCAATTGTGAACACGTCCATACACACGTGTCTGCGGGT CTCTGATCCTACTACTCTCTCCTCCCGTGCTTCGTGTTCTTCTTCCCGCCGGGAGCTCAAAAACG CCGCCGCCGCCGCTGTTCCTCTAACTCTCTTGCATCGACGGGTGCTTTTCGTTGTTTCTTATTGT TCTTGCTCATTACGTGTTTTGCCCCTCTTCTTCAATCGTTCCAAA Found at i:5964633 original size:3 final size:3 Alignment explanation
Indices: 5964625--5964639 Score: 30 Period size: 3 Copynumber: 5.0 Consensus size: 3 5964615 AGCTCAAAAA 5964625 CGC CGC CGC CGC CGC 1 CGC CGC CGC CGC CGC 5964640 TGTTCCTCTA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.00, C:0.67, G:0.33, T:0.00 Consensus pattern (3 bp): CGC Left flanking sequence: Indices 5964125 -- 5964624 ATTGACATCTTCATCTTCTGTACCTTTAAAATCCCATTTCTTCTGACCATCCCATCAATCAGTCA CCGACAAATACGGTCATGCCTATCCTTAGTGATTCTGATTCTATTCTCCGATAACCCTGGTCATA AATCCCCACTAAACTTTCTCAAAACCTTCCGTCCATTCCCCTTCACCCTCTATCTATCTCTATTT TTTTTGTTGCGACCTGATAGTCACTGTGATAACCAACAGTTCTCGCTCTCTTTCACCCCTCTCAA CCTCTCACCGATCTCAAAAAAATTGTCAATTACATTGCAAATATGACTGCCTAGAAACTCTTCAA GAGTGCACACTATTTTCAACTGCTTCTCCATAATTTTTGCATCTCTTCTCGACACCCATCGTCTG CATCGAAAATCAATTGTGAACACGTCCATACACACGTGTCTGCGGGTCTCTGATCCTACTACTCT CTCCTCCCGTGCTTCGTGTTCTTCTTCCCGCCGGGAGCTCAAAAA Right flanking sequence: Indices 5964640 -- 5965139 TGTTCCTCTAACTCTCTTGCATCGACGGGTGCTTTTCGTTGTTTCTTATTGTTCTTGCTCATTAC GTGTTTTGCCCCTCTTCTTCAATCGTTCCAAAGCCTAGACTCTCTCTTCTCTTTGTTCATCTCAT TTTTTATTTTTGTTGCTGTTCCCGCAGTCTGTTATTGTTTCCAATATCTAGTGAAACTTGGCAGG CCAACCACAATAACATATTAATCTAAACTGAGTACTGTAGTTTCAGACTTTTAGCATTGTCTTGA AATTTCTTTAGTTTGGAGGAGTTTTGAACATTTAACTAGACTAGGCGTGGTGAGCAGGTACGTCT TCAAGCCTACGCTCCTGCCTACCGCCTATTTTCTGTTTTGAGTGTTAATATGTGTAAACTTACCT CCGTTTTAATTTTTGGAAATTGAAACAAAGCTATATTCAGATGTACTCCAGTAGGCAGGCCTAAC GGCAGGAGGCTGATAGAAATTTGTTGTGTGTGTATTAAAAATAAC Found at i:5967928 original size:6 final size:6 Alignment explanation
Indices: 5967917--5967929 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5967907 ACAACGGGAA 5967917 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 5967930 GAAAATTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 5967417 -- 5967916 ATATGCTTCTAGTGAAGAGAGTCGCAGTGAATCGAAACAATTTAAGCGTTCTTTTGGATGTTGTT TTTGAAGAAATTGGAAGAATTCAAAAATTCGAGGATACTGAAAAACAACGGAGAGAAGATATGCT TACTACTTCAAAGAGTTTGTCTGATAAGTTAGTGGCAGAGGAAGAAGTTGTCGAAGGAGACACTA CGAACGACGATTTTGCCAAATTGAAGATTGAGTTCAAGAATCAATCTGTAGGTTTTTAATTAATA CTAAAATATTTATGAAACAATCCCAACTTTGCTTACAATCACTTTCTTGTTTTCAATCTCGAAAA ATTGCAACACCATTTTTCGAACGGGTGACGTCATACTAATTTCGAAGTATGCAAAATGCGTGACG TCATGCTTCACAAAAAGAAGTTGCGATGTGTTGGAACAACGAACTACAAACCAAAAAATGAGGGA AAATGTCCCGTTCCCGTGAAAATTTGAAAAACGGGACAACGGGAA Right flanking sequence: Indices 5967930 -- 5968429 GAAAATTTGAAAAACGGGACAACGGGAATTCCCGTTCCCGGGAAATTTTTAAAAACGGGAAAACG GGAAAAACGGGAAACGGGAATTGACACCCTTGATTACAAATCACAAAGCATAATTTCAGATTCGC TGTGAACGGGTCTCACAACGTTTGACTTCTCTCCGAAAACTGATCACAATAATAAAATCCGCACT TGACATGAATGATCAAATTGAGCAAATGATTAGTCTTCTGGTGGATGAGCTGAGTGAGCTTGAGA AACTTGAACAGTTGTGCAAAGAAGTTGAAAGAACTGGAAATCAGAATCTTATTGGGAAAAGCTGG ATTGCTGTGGAAGAGAAACAAATGGTAGTGGAAGAACTTATTGCAAAAGTGAATAGTGATCAAAT CAAGAAACATTCGGATGTATGGGAACAGAAAATTGATCAGATAATCGATCAATTAAATGGTTGCT CAGAAGCAGCAAAGGATATGAGATTGATTATTAGTCAGAATATAT Found at i:5968627 original size:6 final size:6 Alignment explanation
Indices: 5968618--5968634 Score: 27 Period size: 5 Copynumber: 3.0 Consensus size: 6 5968608 AAATTGCCAC 5968618 AATAAA AAT-AA AATAAA 1 AATAAA AATAAA AATAAA 5968635 TTCCGAAAAC Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 5 5 0.50 6 5 0.50 ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18 Consensus pattern (6 bp): AATAAA Left flanking sequence: Indices 5968118 -- 5968617 CCGCACTTGACATGAATGATCAAATTGAGCAAATGATTAGTCTTCTGGTGGATGAGCTGAGTGAG CTTGAGAAACTTGAACAGTTGTGCAAAGAAGTTGAAAGAACTGGAAATCAGAATCTTATTGGGAA AAGCTGGATTGCTGTGGAAGAGAAACAAATGGTAGTGGAAGAACTTATTGCAAAAGTGAATAGTG ATCAAATCAAGAAACATTCGGATGTATGGGAACAGAAAATTGATCAGATAATCGATCAATTAAAT GGTTGCTCAGAAGCAGCAAAGGATATGAGATTGATTATTAGTCAGAATATATTTGAGCATCGAGG TGACAAAAAGGATGTATTCACTCATTTTGTGTTGGATGCGCAGAGCCGAGATATCACTTTATATT GTCTTTCGGGTCTTACAACGATGGCCATTTATCCACGCAAGGGGAAACGGTAAGACTTTCAAATT ATTTTGGAAAGTATCAAAGTGTGAAAAATTAATTAAAATTGCCAC Right flanking sequence: Indices 5968635 -- 5969134 TTCCGAAAACTATTTTTAAACTATACATAATGTAATTTTTTTTTTTCAAAGTTTACTCTAAAATT TTCCATAATTTTCAGAGTGGCCTCCATTTCTTTGGATGCATCATTTGCCACGTGTCTCACTGCGG CCTGTGCAATGAAATCCGCTGAAGGTGTCTACGTAGCAGATCAGAATAATGTTTTCCCGACGTAT TTCTACAGGTAAAACTTGTTTCAGCAATTATAAAAACTAATTTTCTGCGCGCAAAATGAAAAAAA CCCCAATTTAAAATTACAGAAACCGCCCAAAAGCTGGAAAAGGGTAGGAACGTACTATACTTGAA CTAAACTTTTATCGCCAACTTTTCCCTCCACCCACTTCTATCATTCAGTTTACCTCCCATAAGCA TGATTTTCCAGTATTTATTTTGTTTTATAATAAGTTTTCAAAGTTTCAAACAAACGCCAAAACAT ATCTTTTTAATTTTCATGATTTCCCAAACAATAATTTAACGCCTT Found at i:5969210 original size:6 final size:6 Alignment explanation
Indices: 5969199--5969212 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5969189 ATGCTGGAAA 5969199 TCAACT TCAACT TC 1 TCAACT TCAACT TC 5969213 CCACTTTCGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36 Consensus pattern (6 bp): TCAACT Left flanking sequence: Indices 5968699 -- 5969198 TTTCCATAATTTTCAGAGTGGCCTCCATTTCTTTGGATGCATCATTTGCCACGTGTCTCACTGCG GCCTGTGCAATGAAATCCGCTGAAGGTGTCTACGTAGCAGATCAGAATAATGTTTTCCCGACGTA TTTCTACAGGTAAAACTTGTTTCAGCAATTATAAAAACTAATTTTCTGCGCGCAAAATGAAAAAA ACCCCAATTTAAAATTACAGAAACCGCCCAAAAGCTGGAAAAGGGTAGGAACGTACTATACTTGA ACTAAACTTTTATCGCCAACTTTTCCCTCCACCCACTTCTATCATTCAGTTTACCTCCCATAAGC ATGATTTTCCAGTATTTATTTTGTTTTATAATAAGTTTTCAAAGTTTCAAACAAACGCCAAAACA TATCTTTTTAATTTTCATGATTTCCCAAACAATAATTTAACGCCTTATTTTCGAGCAACTAATAT TATAGTTATATTTTTCAGAGAAAAGAGGTACTTGGATGCTGGAAA Right flanking sequence: Indices 5969213 -- 5969712 CCACTTTCGACAGTATTTCTTCGATTCTCGTTGAACCACATCAAATGGTGAGCAATTTTTTGAGA CTTGATTCCAAACTTTTTTACTGAAAACTTGGAATCTGGCAGCCTAGATCTCCATGATTGTGGTC TTATGGGAAAATTATCAATTCATAGCATAATTGTTGTCTAGTTTTGATAATTTTGAAATCTTGAT ACTGAAACATTTCTGAATACTTTTAAGTGAACCGAGAAGCTGGACAAATGTGGCAACTTCCTAAA ATTAGAAATACCAATTCCCATGAATGTTTTTCTCAGATTTTGGGAAGTGTAACTGGAGGTCTTCT ACATTTATCATTTGATTTTGCATCAAATTATGAACATTTTGTTGTGGCAAGCAGTATTTTGGCTC ATCCTATTTCGTCAGGATCCGTAAATTGTATCAAATTATTGGCAACTGGGGAATCCCTTCTAGCA CTTCATTGCACTGACACAGAAATTGTTGTTTCGGAAAAAGATCAA Found at i:5971256 original size:5 final size:5 Alignment explanation
Indices: 5971248--5971262 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 5971238 TTTAATTGAA 5971248 AATTT AATTT AATTT 1 AATTT AATTT AATTT 5971263 CGCTCAATTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (5 bp): AATTT Left flanking sequence: Indices 5970748 -- 5971247 GAAATAAAATAAGAAAAAGTAATGTTCAGGTCTACGAACAAGAGCATCAAAGACTTCATGTGGCA CAAGATTATTTATTCATTCATTGACAGCTCATCACATTGTTATTCATACAGTTCTTGTCACAGCC TCTAAAATTGAACAGGTTGGTTACTATTTTTAGAGAAATTATATTAATATCTATTTTGCAGTAAA TACAAAATTCATGGTTAAAAAATATTTTTAAAACTTACGATTTGGAAGAAACGTTTTCATGCTAA CTGATTTTATTTTATACGAAATTCATTTGAATATGTGTGTGTGTTTTCAAATTAAAAAAAAATTT CAGCACGACTTCATAGTTGCTCACGAACACTCAATGAGCCAGCCAATCGGATTCGAGTTTGTCTC ATACAAGTATTTTGAATTTTTAGTTTACGGTCGTGGAATTTCCAACGAAAAACTTTCAATTGAAG ATCGTAAGAGAATGGATAATTTCAGAGATTTTGAATTTAATTGAA Right flanking sequence: Indices 5971263 -- 5971762 CGCTCAATTACACAATTTCAGTTTTTAGCTTTTTTGGTTAATTTTTGCATTTTGCATCGGGTCAT TGTGTGGGATCACAAACGTGTATTTAAGAAAATTCTAATCGCATTTTGAGTTCAGTTGTGATAAT TTTCAGTGCCTTTTTTTAATTTTTTATTTGTTTTGTTTTTCTGAAATAAAATTATTATTTTTTGA AATTTTAACAATTTGAAGCTTAACAATATTTATTAGTAGGAACGAAAGTACCAGGGGTATTCAAT TATTTGAAAATGTCATTATTAGAGTAATAATAATAATAATAATAGTAATAATTGAGAAATGTCCA ATTAAAAAGTTGAAAATTTTAGCAATTGAGGAATATTATAGAAAATTGAATAAAAATTGAAAAGT GAAAGAGAAAGTTCAGCTATGGGAAGGATTGATTGGTGCGGTGAATGCCTCGGCTGTCATAGGAC GATTGCTGAAATTTTGGAATTTTAATTTTAAATATTATCAGGAAA Found at