TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:9620369 original size:4 final size:4 Alignment explanation
Indices: 9620360--9620372 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 9620350 GGTGTTTTCC 9620360 CCAT CCAT CCAT C 1 CCAT CCAT CCAT C 9620373 TGTCTCTAAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.23, C:0.54, G:0.00, T:0.23 Consensus pattern (4 bp): CCAT Left flanking sequence: Indices 9619860 -- 9620359 ATATTAATATAGTACCCATTATTACGAGTATTCAGGTGAACCCTCTTTCCATTTGACCTCCAAAA ATTGCGGGAGTAGAAAACAGTAAGTCCCCACAATTTTAGAGGGGGTCTACCTCTATGATCTTACT GTACTCGACCATCATATCGTTCTTCCTAGATTTCTGATTTTCTGCCTCAAGTTTGTTATGATTCC ATATGTTGTTATGTTTCTTTTTATCTTTTAGCTTTCTTTGTCTTCCCCCCGATAAATTATTTTAT CTCTTATCTCACTCACTGTCTGGCTCGCGCCTACCGTATCATCGGAAACGAGCGTTTACGTTTGC CCCTTCGCTAGACAAGGTCTCGAAACGAAACGAGACGCGAACTGCAAACTTTTCTCCGTCTGTTT CTCCGTTGCGTCCAAATCTTCTTAAATCACTCTCTCCCTCTCTCACTCCACTCACAGCTGTTTGT GACCCCAACCAACAAAACTGGGGGCCGCGCCATCAGGTGTTTTCC Right flanking sequence: Indices 9620373 -- 9620872 TGTCTCTAATTCTCAGGATCCCTTCAGAAAATGTTTCTTGGATCGGTTGATGGGGAAGATCGCAA CAAAATCCCTTAACCTTTATTTTGAATGATAACAGATCATTACCGTCCGAATAGTTCTCGATGTC GTTTTGTTCAGTGTCTTTCTCTTTTACTACGCCTTTGAACTGATCTCTTTGCCGATTTTGGTGAT GTTTTGTGATCTTATAAGAACTATAGTGAGTATGACTATGAAAAATTGTTCCCAACCTTTAACGC GGTTTCAACTAAATCTTGACCAAGTTTTTCCGAAGTTTTGCCAAAACTATGGACGAACTTTATAT GTATGTTATACACAAAAATTTAGGCAGGAAATTGCCTCCAAAAATTGAGAAATCTTCCTCTGAAA TCTCCAATATTTTCACGATTAGACTCTATTAACCTATGTTCTATTAAGTATTTCATAAATCTACT ACCAAATGTTTTCTAACTTTAGATACTTTGCGTGTTGCTCTATGT Found at i:9621349 original size:1 final size:1 Alignment explanation
Indices: 9621343--9621370 Score: 42 Period size: 1 Copynumber: 28.0 Consensus size: 1 9621333 CCTTAAATTC * * 9621343 TTTTTTTTTTCTTTCTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT 9621371 AAGACCGATT Statistics Matches: 23, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 1 23 1.00 ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93 Consensus pattern (1 bp): T Left flanking sequence: Indices 9620843 -- 9621342 ACTTTAGATACTTTGCGTGTTGCTCTATGTGCCCAGCTGTTCTCCCATAAATGCCAAACTTGACC AACTAGATCATCCCGTACACTTGCACACTACAGCTGATCAAACTTTTGTTTCTTTTTTAGTTTTA TGATTATTATGTGAGAAGTAACTAACTTTTCGTAATTACCAAGAATTCTTAAACTAACTGGTCAA CTGCTTTTTGTTGACTTGTCAATGGGTTCCAGGGAGCCCTCATTGTAAAAAACATATGGTAAGTG CAATTGGCTATCGTCTATAAGCTCAAGGAAGTTGGAACCAATTTTTTGTTGATATTTTTTTCTGT TTTGTCTTCTCCATTCCGTTTGAGAATCAGTTTGTGTGTTCATCGCTCTCTCGTTTCTCCGATAA ATCGCTAATCAACATTTTTTCTCGGTTTTTTAAGAAAGTAGAAAGATCAAAACATCAAGAGCTCA TATTTCATTTCTTGGGGTGAAATCTTGAAATCTAGCCTTAAATTC Right flanking sequence: Indices 9621371 -- 9621870 AAGACCGATTTATTCTTGGTTCTTCATATTTTATCAAGAGAGAATCTGAGCAAGTCCGTTTGTAA CTTTTGAAAGACGTTTTGTGATTCTGCAAATTTATAGAGAACTGATTGTTATTAAAACATGGACT CTGTCGGCTTCACGAGATAAGCTCATCGTCAGTTAAAAATAATTTCATTACAAGAAACTTTCGGT TTCTAATTCCAATTTTGGCAATGTTCTGATGTTTCGATTACTCCCAAACTCTGATCATTCAAATT AGTATCATGAAACATTTTAAGTAAAAGTTGTTGCATTAAACACCTGAAAATGGATCACCTGTTCT TTCCCTCTCATTTTTTCAATTATAAACCCTTCAGTTTTTCTATTTTCTATACATTTAAAACCTAT TTCATCTGCTACACTGAAACTGCCCTCTTCCTCACGCCTTTTTCATTTAATTTACATATACATTG GTACCTACCGTATGAAATAGACGAACTGCCCGATTTTGAATTATA Found at i:9622616 original size:2 final size:2 Alignment explanation
Indices: 9622609--9622625 Score: 34 Period size: 2 Copynumber: 8.5 Consensus size: 2 9622599 GCCTGCCTAC 9622609 TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA T 9622626 CCAGGATCAG Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 15 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (2 bp): TA Left flanking sequence: Indices 9622109 -- 9622608 ATTTCTTATTTCAAATAATTCGTGGTATAATCATTGTTATCTTTGCCCCCAAGTGTTGCTTATCA CAAAGATTTTCAGCTGGGAAAAGAGCCTATCTTCTTTGATTCTACAAAGAAAATGGCATGTCAGC CAGTCAGCCAACATAGTGGGGGAAAGGTGATAAGAGTTACGGGTTTCGGGAAACTTTTGTCGGAA AAAGAGAGAATAAGGAACAAATAGAATTTCAATTCGAGAACCTCAAAAATCAAAAAAGAAAATTT TTTTCAGGTAGATCAATAGTAGAAAATGGTTCGTTCGGATAGCGCAGAAGAAGATCAAATCATCA TTGATGATGGGTAAGGATTTTTGTACTACATTTTTTGCTCATGGTTTTAAGAAGAAACATTCGAA AAGTAATGTATTGACATAAGTCTAAGCCGAGTTTTGCTTATAATCATAATATGGTTGAATTCCCG CCTTCTAGGCGACTAGGCAGGCGGTCTGAAGACGTGCCTGCCTAC Right flanking sequence: Indices 9622626 -- 9623125 CCAGGATCAGACTCTCATTTGATGAAAGTATTAAAATCTGAAAATAATTCGAAAATAAACTTTTT TTGCTCCCTCTAAACCTATCAAGTTTCCAAGTGAAGTGTTAAGTCTACAGTAACTTTTCAATAAA TAAAATTCAAATAATTTCCCATGGCTTTCAATTCGTTCTCAGTGACACGCAACAAGAACACCTGG CTTTTAGAGAAAAACACAATATAGAGACGCAGATGAACTTTTCCTCAATTCTAAAACTGCATGTG GCAATTTGTACTAATAATTTCTCATAATTTTTGGAACAGAAATATTGAGATGTTAAATTGAAGCT AATTTATCCCATTTTCTTTCTTTTTTTTTGTGGAATCGTGGCATTTATTGAATTGATAGGTTCTA ATTGTAGATGAAAAGATCAATATAAAAATCAGAACAACTAAAGCTAGAGTTATTTTAATATTAGT TCAAATGTTACCCATTGTCGGCAAAGTTCAAATTTAAGGTCTAAA Found at i:9623248 original size:5 final size:5 Alignment explanation
Indices: 9623238--9623250 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 9623228 CCTCAAAGGA 9623238 GTACT GTACT GTA 1 GTACT GTACT GTA 9623251 GTTGTAGAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38 Consensus pattern (5 bp): GTACT Left flanking sequence: Indices 9622738 -- 9623237 CAGTAACTTTTCAATAAATAAAATTCAAATAATTTCCCATGGCTTTCAATTCGTTCTCAGTGACA CGCAACAAGAACACCTGGCTTTTAGAGAAAAACACAATATAGAGACGCAGATGAACTTTTCCTCA ATTCTAAAACTGCATGTGGCAATTTGTACTAATAATTTCTCATAATTTTTGGAACAGAAATATTG AGATGTTAAATTGAAGCTAATTTATCCCATTTTCTTTCTTTTTTTTTGTGGAATCGTGGCATTTA TTGAATTGATAGGTTCTAATTGTAGATGAAAAGATCAATATAAAAATCAGAACAACTAAAGCTAG AGTTATTTTAATATTAGTTCAAATGTTACCCATTGTCGGCAAAGTTCAAATTTAAGGTCTAAAAT GTGTTTTATCACTTTTGGAATTTTTTTTTAAAATGCATTTATAATAATTTAAAACGACTTTGTGA ATTTCCAATTTTTAAAAAATATGTTTTTTCTCTATCCTCAAAGGA Right flanking sequence: Indices 9623251 -- 9623750 GTTGTAGAATAGAAAAATATGAAGATATTCACGAAAAAGCTTGCGTCTTGAGAAGGCATTAATTG GAAAGTTGAAGTTAATTGGCCCCAAATTATTTGATAAATTTCGCTTCTTGAACAACCTCATCTAC GAACACATTTTTGCAGATTTGATCTAACTGAAGAGGACGAGGAGATGATGAGTTCGGGTACAGGT GCATTGCCCGTGACTATCGCCGACTGGAATTCCGTGACAAATGCACGAATGGCACCACCATCCAT CATGTCAGCTGCTTCGGCATTTGATTTGACGGCTTCTGGAATGCAGAATTCGTTGCGTTCTGTCT TGCCTACCTCGACGATTGGGCATGCACCAATGCTCGCCAACCGGTCACTATCCCAACCGGCGCCA CTTTCACCAACGTCGCTCGACCCCGACAGAAGGTTAGTTTTATAGCACTGAAAGGTGGTGAGTAC TGTAACTTTATATAGTATAGATCCAGAATGCGTCGGCAAATTGCC Found at i:9625845 original size:6 final size:6 Alignment explanation
Indices: 9625834--9625854 Score: 35 Period size: 6 Copynumber: 3.5 Consensus size: 6 9625824 AAATGTAGAG * 9625834 TTACAA TTACAA ATACAA TTA 1 TTACAA TTACAA TTACAA TTA 9625855 TCAAATTTTC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 6 13 1.00 ACGTcount: A:0.52, C:0.14, G:0.00, T:0.33 Consensus pattern (6 bp): TTACAA Left flanking sequence: Indices 9625334 -- 9625833 GTTAGGTATTGGGGGGCCAAACCAGTAATTCAAACTTTTTCTATTAGTTTCGCCAATGTTTGAAC ATTTTGCGTCTTTCTGGGTACGTATGCCAAATTGATTTTAAAAAAACTTTCCAATAAAAACAACC ATTTTTCCAATAAAAACAACGAAAGACGAAAAACGACGAAAAACTCCTGAAAATTGGTACAATTA TTTAATGACAAACGTTTGAATTCACGGATTTGCCGCCAAATACCTAACGAGACCCAGCTATGGAG GGCGGAGATTTTCTACGTCTGCATAATAGTTCTCGAGCAAACTTTTCGAATTTTTAAAAAAATTA ATATGTTGCCATCAATTCCAGAAGCACACAACCGAGCCTGACCCTGTCTCAATCAATGCAAACAA TTGTTGAAGCTATTCGTCATTTGGAGGGAAGTCATTTCATTCCAACATCTCCTCCACCAACCTCA CAGACATCGCTCGTCCGTTGAGCCTGACTTTTGACAAATGTAGAG Right flanking sequence: Indices 9625855 -- 9626354 TCAAATTTTCCACGTTTCATAATCTCTCTCTCTTTCTCTTTTTCTCTCTTTCTTTCTTCAGGTTG ATCCTGTTTTTTGCTCTTCATCTTTTTTCTCTCTCTCACCAGGCACAGTATCTATCATTTTTATC ACAAAATTTGATGAATTTTTGTTCTTTTCCCATTTTTCTTCTTGTTTTAGGTATACTACTTGTTG TGTTTCTATGAAATGTTTTTTTCCAAAATTTTTTGTGCCGATTGTGGTCTTCTTGTCATTTTTCT TCTAATCAATCTAGCTTCCTTATTTCCCGCGCTCTCACGGACCTATCCATTGTTTCGTTCTCCCC ACCGATAACTTTTTGTTTTTTCATTTTCCTTTTTTTCCAGTCTTGTTCATCTCCAGACACTGCCC CGTTACTTTTACACAAATCGTGTCGATTTCCTCTTTTTTTCATTTTTCACCCGGTGGTTTTGTTG ACCGTATGTGCAGCTTGAAACACTTTCATTTTCAGACCTCAATAT Found at i:9626206 original size:6 final size:6 Alignment explanation
Indices: 9626197--9626212 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 9626187 ACTTTTTGTT * 9626197 TTTTCA TTTTCC TTTT 1 TTTTCA TTTTCA TTTT 9626213 TTTCCAGTCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75 Consensus pattern (6 bp): TTTTCA Left flanking sequence: Indices 9625697 -- 9626196 TGACCCTGTCTCAATCAATGCAAACAATTGTTGAAGCTATTCGTCATTTGGAGGGAAGTCATTTC ATTCCAACATCTCCTCCACCAACCTCACAGACATCGCTCGTCCGTTGAGCCTGACTTTTGACAAA TGTAGAGTTACAATTACAAATACAATTATCAAATTTTCCACGTTTCATAATCTCTCTCTCTTTCT CTTTTTCTCTCTTTCTTTCTTCAGGTTGATCCTGTTTTTTGCTCTTCATCTTTTTTCTCTCTCTC ACCAGGCACAGTATCTATCATTTTTATCACAAAATTTGATGAATTTTTGTTCTTTTCCCATTTTT CTTCTTGTTTTAGGTATACTACTTGTTGTGTTTCTATGAAATGTTTTTTTCCAAAATTTTTTGTG CCGATTGTGGTCTTCTTGTCATTTTTCTTCTAATCAATCTAGCTTCCTTATTTCCCGCGCTCTCA CGGACCTATCCATTGTTTCGTTCTCCCCACCGATAACTTTTTGTT Right flanking sequence: Indices 9626213 -- 9626712 TTTCCAGTCTTGTTCATCTCCAGACACTGCCCCGTTACTTTTACACAAATCGTGTCGATTTCCTC TTTTTTTCATTTTTCACCCGGTGGTTTTGTTGACCGTATGTGCAGCTTGAAACACTTTCATTTTC AGACCTCAATATGTCTCTCTATTGCTATCGCGCAATAATCATAACTAAATAATTTAAATAAACCT CAATAGTACAACCACTGAGACAAGAGTACCAATATTTATGTGAAAATTATGATGATGATGAGGAG CACATGATATAAATAATACAATAAACACAGCATATGATAATCGACAGAGATCCGTTTTAAGAAGT GAATGAGAATCCCGCGAGAATAAATAATAATAAATCTAAAGCCCTCTTGTCAGATAGTCCTTTTG TACGACCGCCTTGTACTCGTCCAGCAAGTCTTGCACAATGTGCATTGCATCGTCCATCATATCCA GCGAGAAATTGTCAATCTTTTCAAACTTGTCGATGAAGGCTCTCT Found at i:9626464 original size:3 final size:3 Alignment explanation
Indices: 9626456--9626468 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 9626446 TGTGAAAATT 9626456 ATG ATG ATG ATG A 1 ATG ATG ATG ATG A 9626469 GGAGCACATG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31 Consensus pattern (3 bp): ATG Left flanking sequence: Indices 9625956 -- 9626455 CACCAGGCACAGTATCTATCATTTTTATCACAAAATTTGATGAATTTTTGTTCTTTTCCCATTTT TCTTCTTGTTTTAGGTATACTACTTGTTGTGTTTCTATGAAATGTTTTTTTCCAAAATTTTTTGT GCCGATTGTGGTCTTCTTGTCATTTTTCTTCTAATCAATCTAGCTTCCTTATTTCCCGCGCTCTC ACGGACCTATCCATTGTTTCGTTCTCCCCACCGATAACTTTTTGTTTTTTCATTTTCCTTTTTTT CCAGTCTTGTTCATCTCCAGACACTGCCCCGTTACTTTTACACAAATCGTGTCGATTTCCTCTTT TTTTCATTTTTCACCCGGTGGTTTTGTTGACCGTATGTGCAGCTTGAAACACTTTCATTTTCAGA CCTCAATATGTCTCTCTATTGCTATCGCGCAATAATCATAACTAAATAATTTAAATAAACCTCAA TAGTACAACCACTGAGACAAGAGTACCAATATTTATGTGAAAATT Right flanking sequence: Indices 9626469 -- 9626968 GGAGCACATGATATAAATAATACAATAAACACAGCATATGATAATCGACAGAGATCCGTTTTAAG AAGTGAATGAGAATCCCGCGAGAATAAATAATAATAAATCTAAAGCCCTCTTGTCAGATAGTCCT TTTGTACGACCGCCTTGTACTCGTCCAGCAAGTCTTGCACAATGTGCATTGCATCGTCCATCATA TCCAGCGAGAAATTGTCAATCTTTTCAAACTTGTCGATGAAGGCTCTCTTTGATCGTAGTTTGTC GTATTTGGAGAGAAGCGATTCGAATAACGGAGCCACGCTTGTGCTGTTATTGAGCAAGAGTCCAG ATACTTTGTATTGTGGCCGAACATATGGAGAGAGTGGAGCATGCATCATTCGAAGTGGTTTAAGC ATGTAGAATGGAGGCCTTCTGATTGCGAACTGAAATTTGATTTTATTGATTTGATGCTTTAAGGT GGATTATAGAAAAATAACGAAAAAAAGTCATTATTAATCACTAAT Found at i:9627309 original size:6 final size:6 Alignment explanation
Indices: 9627298--9627312 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 9627288 TTAAAGTTGC 9627298 TTATTT TTATTT TTA 1 TTATTT TTATTT TTA 9627313 GAAAATATTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (6 bp): TTATTT Left flanking sequence: Indices 9626798 -- 9627297 TTTGTATTGTGGCCGAACATATGGAGAGAGTGGAGCATGCATCATTCGAAGTGGTTTAAGCATGT AGAATGGAGGCCTTCTGATTGCGAACTGAAATTTGATTTTATTGATTTGATGCTTTAAGGTGGAT TATAGAAAAATAACGAAAAAAAGTCATTATTAATCACTAATTTTGTCTTTAAAATAGTGATTTTA TTGGTGCATTTTTGATTTTCTGACTAATGTGTTATTTGAATTGCCACGCTTTTGTCAAATTTCCA AGTTTCTAAAAATTTTTTACTTCATGTCAAAAATACTTTTTAAAAAAGTTTGCTTCACAATTGCT GATTCGTCAAAATAAGCGCTCATTTTTGCAATGTAATTTGAAGATTTTTTTCGTTTGCAGTATCT CGGTATTTGTGACCGCCTTCGTGTTTTGAGAATAAAATCTACATCTCCAAAATTAGCTTACGAAA ATTTTTCGTTTTTCCGATATCTCGAAAAATATTTTTTAAAGTTGC Right flanking sequence: Indices 9627313 -- 9627812 GAAAATATTTATATGCTTTCTTATAGTTTTCATGAACATAAACAAAATTTGATAAAAATTGAATT TTATGGTTGATTTAGTAAATTTATTTTTCAATTTTCCCGGAAATTCTTTAAAGTATTGAGCTTAC ATCAACGTTTTGCTCAGCAGTCATAATTGTATGTGCCTCAATTTGTCCTTGAAGGAACATGTAAG CTGATAGCATGCAGTCATTTGGCCGAACCCGAGAAGCAGTTGAAACCATCATTGAAGTTGGTTTT AACAAGAAGCGAGTGACGTCAGCGACTGAAGTTTTTCGGGTAAAGTTCTCATTTGGATCGACAAC AGGAGAGATAGCTGCAAAAAACAAAATAAATAGATAAAATAACATATTTCGGAATAAAAACAAAC CGGATTGAATAAAGTGCATTGGTGGAAACGGAGCCAAATCCAAATACCGAATTGATGGGCACATT GCAGAGTTGAATCGATATGGAGCAGTGGAAGTGCTCATGATTCGG Found at i:9634929 original size:2 final size:2 Alignment explanation
Indices: 9634924--9634943 Score: 40 Period size: 2 Copynumber: 10.0 Consensus size: 2 9634914 TTTTTTCATA 9634924 AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT 9634944 TGGAAGTTGG Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 18 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 9634424 -- 9634923 AGACGTTTTCCAACAATTTATTTTTTTTTCAAAAGATCAAAAACTTATTGGCCAAAAAATGAATT TTCTAAGAATTTTCTAAAACTTTAGAAAATGGCAAAAAGTGTTTTATTTCACAATTTCCACAAAA TCTCAAGTTTAAATGTTGCAGCCTACTCTAATATAGTACTTACGTGGTGGAGTTGGCTGCATTTG ATTTCTTGCAAGTTGATTCAAAGCTGCCAAGTTGGCTGCATTCAATGCAAACTGTGGAATTGCAC CCTGTTGCTGCTGCTGCTGTTGTTGCTGAATTTGTTGCTGTTGTTGCTGTTGCTGTTGCTTCTGT ACGGCTGCTTGAGCAGCTTGAAGTTGAGTTTGAACATTTTGAAGATGTTGTTGTAATCCATTATT GGCAATTGTTTGACGAAGAACTGCGTTCAGCGGATTCTCTTCGCCATTTTGTTGTTGATTTGCCA CTTAAAAAATAAAATGAATGAGTTGTAGGGGCATTTTTTTTCATA Right flanking sequence: Indices 9634944 -- 9635443 TGGAAGTTGGTGAAAATTCCACATTACACTTTAAAGGTTCTTGCTGTTTTTCTGAGTTGGTCTCG ACGCGATATATTGAGATGCGAGATATTGTATGAAACGTTATGTCTTAAATTATTTAGCGGAACCC AAAATTTAACAAAACATTTAGCGCCTAGTTTCAAGTTTTTGGAAAAGTTGACTGTCTTAGACCTT ATCAAATAATAATTCGAAAAAAATTTATTCTTTTTCAATAAAATATTTAATCAAAACTTTTGAAT GAACTGCGATTGTCAAATTAGAAAATTCGAAAAATTGAACTTAATCAAAACAAAACAGGTATGCC TTAATAGATTTTTTTTTGGATGCTCTCAATAAATCCCAAAAAAAAAGGCAACTTACATTTATTAA TAGTCATCAAAATGCTGGAAGTCATTGGTGGCATTCTCTTTCTATTTGCATCAACATTAAATAAT TTTGACGTATTTCCACTGAGCAATAAAGCATTTAAATTCAATGCA Found at i:9637900 original size:2 final size:2 Alignment explanation
Indices: 9637893--9637984 Score: 184 Period size: 2 Copynumber: 46.0 Consensus size: 2 9637883 GAACCATATG 9637893 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA 1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA 9637935 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA 1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA 9637977 GA GA GA GA 1 GA GA GA GA 9637985 TGTGTGGAAG Statistics Matches: 90, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 90 1.00 ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00 Consensus pattern (2 bp): GA Left flanking sequence: Indices 9637393 -- 9637892 CGTACTAATCGCGATGATGAAGAAACGGTAGAAATATGGAGAGATGGAGAGATCATTAAGCGGAG TTGAACGGTAAAGAAAACAGAAAACTCGCGCGCGGGAGGAGAAGGTGGATGAGGACGGCAATTTG AAACAGCTACTTTATACAGGAAATCAGAACACACATTAATACATGTGACGGGTGGATGTATAATT TGAAACTGGATATGGTTAGAGCTTACGACATACGGTTTCCAAGATTGAACTGATTATTAAGCCAG GTGGCCAGCGGGTCTGCAGGGTGGCCTGGGAGTCAAGCTCGATGCACCCTGCTTAAAATAGAAGA CACTGAAAATTAAATAAACAATTCAGTTTTGAAAACATTTCAGAAATGATGATCAGATGATACCT TTCAATCAACTTAGTGGTCTCTTTCTGAAAGCACACATTTTCCAAAACTGGACACTGATCCTATA CACACCTGATAACTCCCAGGGATTGATGTTGCGCAGAACCATATG Right flanking sequence: Indices 9637985 -- 9638484 TGTGTGGAAGAAAAACAAACTGATAAAACTGGGAAGCGAGCTGTTTGTCCGAGAGAGAGACTATG AGCTAAAATGGGAAATCACGAAACGCATACAGTAAGATACCATCAAGCCCCCTCTCTCCCCTTCT TAGGCTTCAACTCTCTCTCTGTCAAGGAGTGGTGGTGGCGCAACCGAAACTGGAGACGCGTGTGA AGAAATGAGGTGGACTGCAAACTGATACTCGTTACCGCAAAGTCATCTCGAGCATGTACAAATGT TCTAGGTAACCTAGAAGGTATCAAATTGACGTAGTAGTGCGCGAAAATGGCATGTATACGAGAGA GGTGGGTGAAACAGTTAAGTTGTCACATACTAACTGATAATAACAGCACCACATGGAGCGAGATG GTGATCAGAAAAGACAATGAGATAGTAAAATATAGTAACACAACACAACACTGAAATTTCGCGTG ATAACGAGTGAAGCTCTCAACAGAGTTTCAGTACTCTTTCTGCGC Found at i:9638421 original size:5 final size:5 Alignment explanation
Indices: 9638411--9638425 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 9638401 AAAATATAGT 9638411 AACAC AACAC AACAC 1 AACAC AACAC AACAC 9638426 TGAAATTTCG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00 Consensus pattern (5 bp): AACAC Left flanking sequence: Indices 9637911 -- 9638410 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGATGTGTGGAAGAAAAACAAACTGATAAAACTGGGAAGCGAGCTGTTTGTCCGAGAGA GAGACTATGAGCTAAAATGGGAAATCACGAAACGCATACAGTAAGATACCATCAAGCCCCCTCTC TCCCCTTCTTAGGCTTCAACTCTCTCTCTGTCAAGGAGTGGTGGTGGCGCAACCGAAACTGGAGA CGCGTGTGAAGAAATGAGGTGGACTGCAAACTGATACTCGTTACCGCAAAGTCATCTCGAGCATG TACAAATGTTCTAGGTAACCTAGAAGGTATCAAATTGACGTAGTAGTGCGCGAAAATGGCATGTA TACGAGAGAGGTGGGTGAAACAGTTAAGTTGTCACATACTAACTGATAATAACAGCACCACATGG AGCGAGATGGTGATCAGAAAAGACAATGAGATAGTAAAATATAGT Right flanking sequence: Indices 9638426 -- 9638925 TGAAATTTCGCGTGATAACGAGTGAAGCTCTCAACAGAGTTTCAGTACTCTTTCTGCGCGCGTTG ATAGAGGGAGTAGTAGAGGCACAATACACTTTTGGTAGGGAAATAGTATAATAAGGGTGAAAGAA AGTAACATTGAACTGATAAAAACCTGGAAGTTGCCTAGAAGAAGAGCACACAAAGCGTCGAGACG CACTTTTCCAACAAGAAGACAAAAGGGTGATAGGTTCAGAAATGAAATCGAAAGTTTTGGGAATG GAATCAAGTATCAAGTATGATCTAATCAGTTTCGCTCCGAAAGTTACAATTCTCAAAGTTTTCTG TATAAAAATAATTAGGTTTAGGCAGATTCGAACCCCCCCCCCCCCCCAGTTCTTGATTTTGACGG CTTATATCTCGGGTGTCTTAACTTTTATCAAAAAATACCCAACTACCAAAAATAGAAAAATTCTG TGCACGTATTTTGTTAGTTGACAATATTTTGATAATACCAAAAAC Found at i:9638789 original size:1 final size:1 Alignment explanation
Indices: 9638783--9638797 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 9638773 CAGATTCGAA 9638783 CCCCCCCCCCCCCCC 1 CCCCCCCCCCCCCCC 9638798 AGTTCTTGAT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 9638283 -- 9638782 GCGCGAAAATGGCATGTATACGAGAGAGGTGGGTGAAACAGTTAAGTTGTCACATACTAACTGAT AATAACAGCACCACATGGAGCGAGATGGTGATCAGAAAAGACAATGAGATAGTAAAATATAGTAA CACAACACAACACTGAAATTTCGCGTGATAACGAGTGAAGCTCTCAACAGAGTTTCAGTACTCTT TCTGCGCGCGTTGATAGAGGGAGTAGTAGAGGCACAATACACTTTTGGTAGGGAAATAGTATAAT AAGGGTGAAAGAAAGTAACATTGAACTGATAAAAACCTGGAAGTTGCCTAGAAGAAGAGCACACA AAGCGTCGAGACGCACTTTTCCAACAAGAAGACAAAAGGGTGATAGGTTCAGAAATGAAATCGAA AGTTTTGGGAATGGAATCAAGTATCAAGTATGATCTAATCAGTTTCGCTCCGAAAGTTACAATTC TCAAAGTTTTCTGTATAAAAATAATTAGGTTTAGGCAGATTCGAA Right flanking sequence: Indices 9638798 -- 9639297 AGTTCTTGATTTTGACGGCTTATATCTCGGGTGTCTTAACTTTTATCAAAAAATACCCAACTACC AAAAATAGAAAAATTCTGTGCACGTATTTTGTTAGTTGACAATATTTTGATAATACCAAAAACAA TCGAGATATAAACTTTCAAAGTGGAGCAAAGATGATAGGAGTCTAATTGGGAAAATGTGGTATTT CTACAGTTGGTTTGATGGACAAACAATTCAATAAAAGCTTGACCTCTACACAAGTCGAGTTCTGA AAACTATAAAACAAATGAAGTCCGAATGACCAGTTGCCGGAGACAACCTCCTCCTCTTCCAACGG GCGGTCTCTAGAAAAAAGTAGCCCAAACAGGGAGATCGCTAGTTGCATTGAGTTGTGCATTGTCA AAGGCGAAGAGGAGGGCAACTCGAAGAATGGCGCACTAAGGGGGTATTGTGCAATCTATTTTCAG AAAGTATACTGTTGGGGTGGCTCACCTATGTGCGCGCAAACATTT Found at i:9639427 original size:5 final size:6 Alignment explanation
Indices: 9639404--9639428 Score: 36 Period size: 6 Copynumber: 4.5 Consensus size: 6 9639394 CACAACCGTC 9639404 TCAG-G TCAGAG TCAGAG TCA-AG TCA 1 TCAGAG TCAGAG TCAGAG TCAGAG TCA 9639429 CGAACCGAAC Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 5 9 0.47 6 10 0.53 ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20 Consensus pattern (6 bp): TCAGAG Left flanking sequence: Indices 9638904 -- 9639403 ATATTTTGATAATACCAAAAACAATCGAGATATAAACTTTCAAAGTGGAGCAAAGATGATAGGAG TCTAATTGGGAAAATGTGGTATTTCTACAGTTGGTTTGATGGACAAACAATTCAATAAAAGCTTG ACCTCTACACAAGTCGAGTTCTGAAAACTATAAAACAAATGAAGTCCGAATGACCAGTTGCCGGA GACAACCTCCTCCTCTTCCAACGGGCGGTCTCTAGAAAAAAGTAGCCCAAACAGGGAGATCGCTA GTTGCATTGAGTTGTGCATTGTCAAAGGCGAAGAGGAGGGCAACTCGAAGAATGGCGCACTAAGG GGGTATTGTGCAATCTATTTTCAGAAAGTATACTGTTGGGGTGGCTCACCTATGTGCGCGCAAAC ATTTCGAGTTTCAAAAGCATCAAAAGTTTGCGTCCCTCTCAGCTTTCCGCGCTGTCTCCGCGCGG ACGCGTCCGCCGGTGCTCCGCGAGTTGGTGGTGGGCACAACCGTC Right flanking sequence: Indices 9639429 -- 9639928 CGAACCGAACTGACCGCTGAGAAACGAAGGGAGCTCCCACAAGTCAAACACGTCGGCGCGCTCTC CTACATGCTTCACTATTTCCTAACATTTTTAGAGTACGGTAAAATAGCTTCTGTTGTTGCTTCTA TTGCTTCGGAGCCACAAACAATGCAACTTTTATTCCTTCTAGCACAGAAATTTGAAACGGTTCAG TTCTTGTCTTTTGGCGCATTCCGCGTACTTTTCCGTCTCTGTAGCAAGTGCGATCGCGCCCTCCG ATTTGAAACTTTTTCTGCGGAACGAGAGTGAATTGGAATGGACATAGAGGTGAACACGCTAATTA GACAGATCCGAGAAAAGGGAAAGAAATAAGGATACGGTAGTCGGGAGTGTTGCGAACTACCAGAA AACCAGTTCAGAATGGGATTAAAAAAGGCAAGGCAGGTGAGGATATACAAGAGGATTTACAAGAA AGAATTAGAAAGTTCAAGGGATTACTGTATACTTAATCATAGTTC Found at i:9639997 original size:6 final size:6 Alignment explanation
Indices: 9639986--9639998 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9639976 CAAGCGGACT 9639986 TTTCTC TTTCTC T 1 TTTCTC TTTCTC T 9639999 CTTCACACAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69 Consensus pattern (6 bp): TTTCTC Left flanking sequence: Indices 9639486 -- 9639985 GCGCTCTCCTACATGCTTCACTATTTCCTAACATTTTTAGAGTACGGTAAAATAGCTTCTGTTGT TGCTTCTATTGCTTCGGAGCCACAAACAATGCAACTTTTATTCCTTCTAGCACAGAAATTTGAAA CGGTTCAGTTCTTGTCTTTTGGCGCATTCCGCGTACTTTTCCGTCTCTGTAGCAAGTGCGATCGC GCCCTCCGATTTGAAACTTTTTCTGCGGAACGAGAGTGAATTGGAATGGACATAGAGGTGAACAC GCTAATTAGACAGATCCGAGAAAAGGGAAAGAAATAAGGATACGGTAGTCGGGAGTGTTGCGAAC TACCAGAAAACCAGTTCAGAATGGGATTAAAAAAGGCAAGGCAGGTGAGGATATACAAGAGGATT TACAAGAAAGAATTAGAAAGTTCAAGGGATTACTGTATACTTAATCATAGTTCTTTTGCACTTAT CACTCTCTGGAACACACATACAACATACATAATATCAAGCGGACT Right flanking sequence: Indices 9639999 -- 9640498 CTTCACACACACGGGGCTCAAGTACGTATAAATGTGTTGCACATACATACACGCTGTTTGATGTA ACTTTACACCGACACACTGAAGGGCGATGAGCCAATGTCCAGGAGGCACTCCGAGATCAGTGACT CTAGTAATCGGCGGGGCTCCGGGTCCCCCCGGTTGGTAGGTTACGTGTGCTCGTGGGATGCACGG AGGAGATGAAGCTTTTCGCTCGATTACAACATTCGCAACATTGTAATGCTCGTCGTGTGGACCGA TTGCATAATTATACGAGCGGTGGGCTCGGAGACAAGCTTGATCGAAGAGGAGTTCCCAAAGTTTC TCCTCCCGTACCGACTAATATATTGTGATTGAGATGGAAGGTGGGAAGGAGATCAAGAGAAAATT GAATATTTCGGGGTTTAATTTGTTTTGAAAAATTGTGTTTCTTTTTCAGTAGTATTGCACCCCAC TACTTCACTATAAAAGGTAAAAAATACAAAAGAATTAGAAACAAT Found at i:9641356 original size:6 final size:6 Alignment explanation
Indices: 9641345--9641360 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 9641335 AAAGTAGTGA 9641345 AAAATG AAAATG AAAA 1 AAAATG AAAATG AAAA 9641361 GGATAGGTGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12 Consensus pattern (6 bp): AAAATG Left flanking sequence: Indices 9640845 -- 9641344 TTTCCACAATGAAAATCAGGTGACCGCCTCAAAAACAGGAATGCATGCCGAGGAGGTATAAGAAT AAGTTTATGTTAAAATCGGCATGCATATACAAATATACATGTAAACATAATGGGAAGTTCACTGG TAAAATCGTATAAATTAGTGCAGGGGGGGAGACTCTCGGGGAGGGCACATCCAGTATTACAGCAC CAGTGGAAACCAGGGACCCAGAGCCCTTTGGGTTAGTGCAACAAGAGGAAGAGAGATAGAGTGTG CTAGACGGTTACATCATAAACAATTGAGCAATCGGTTCTTACGGAGTCTCGGAGCACTAGAGAGC CCTCTGTTTCGATCATCTAGAGTTCGCAATTACCACAAAATTTCGAGTGAGTGAGAGTCGAGCCT AGGCGCTTCAGGAGTGGAAGAAGAGAAGTTGAATGTTTTGATTTTACAAAGTGAAGATGGAAGAG AAATGAATTGTTATACTCATGAAGCTGAACCAGGGAAAGTAGTGA Right flanking sequence: Indices 9641361 -- 9641860 GGATAGGTGAGTGACCGGTGTGAGGATTTTTGTCAAAATGGACGTTTCCAAGGATTGAAGGTTAC GGGACTACTTTATTTTGAAAGGTTATATCTCCTCGGCTCATTTCGAAGATATCAATAATCTATTA ACTACAAAACGATAGAAAAATGTCTAACAAATATTTTTTCAGGTAACAATTTTTGAAACGGAAAA ACGATAGAAAAGATATAAGCCGTCAAAGTTGCACAATTAATTTTTCGGATAGAATGCATAAACTA TATGAATTGTTCAAAATAGAGTTATATGTAGTAAAGAGTACGGTAAGTGTAGTATTCACAAGTAG ATACAAAATGAATACAAAATGAAGAAAAGAGATATATGTATAAGAAACTATAAAATATGAATTTT CCTAGTATAGCTGGAGAGGTGGCGGACAAACTTTACAAAAAATTAGCATTTTGATTGCAAAGAAG AAGTAAAAGAAGACTTGAACTGGTGGTTTAAAAGGATTCAGAATA Found at i:9643594 original size:6 final size:6 Alignment explanation
Indices: 9643583--9643597 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 9643573 TATTTGTCTT 9643583 TTCTCC TTCTCC TTC 1 TTCTCC TTCTCC TTC 9643598 AACTCCCACC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53 Consensus pattern (6 bp): TTCTCC Left flanking sequence: Indices 9643083 -- 9643582 AGGCGGTAACATTTAACCAATATAACTATAAATTTTGAAAAATGGATTTTTCAAAAATTCTCTTT GAAAAACTGGAAGTCTGGACAGCACTGACTACAGATTGGCAAATGAAAGTAAAAAGGGGGCGGGA CTAAATGTACATATGTATAGATGGTGTATACAAAAAAGAGAGTTCGAAGCTCGAACAATCCACTC CAAATCCACATTTATGAAAAAAGAAAACGACCAAATAATGGGAGTCTTTTAAAATGAAATGGACA AGAAGAAAAGCAGCAGAAAGTGCTCATCCTACCGTAGACTACGTGTCACTCTCGGGGTGCCCCGC ACAATTCGCATAATAATGACTCTCTCTTTTTCTCATCAAAATGGTTATTATTTGGTCTGGTAACC ATGGACATTTTGAAGAGCAAGAAGGCACAGAGAAAAAGCTCTTAGGACAAGCGGGACGAAAGCGC TTCGTGACGGTCAAAGTTTACCTTTTGGTAAGTTTTATTTGTCTT Right flanking sequence: Indices 9643598 -- 9644097 AACTCCCACCTCCCAATGAGCAATACAGTGTGTGTGTGTGTGTGTTCGTAAAGAAAGAAAGAAAG ACCAGTACTTTTCCGACTAGAACCACCATCTCCGAGCCCAACAAAAACTTGAAAATTGAGCCGGT CACAGGGTGGTCAAAAATAGAATTGGTGGAGACAAGTACGGTTTGCAACACACTCGAGTCCATCC CCAGGGGGCTCGCTTTCAAAAATCGCGCCTCCCAGAGAATAAATAAGGAGTCTATACTGTCTGTC AAATACCTTTGGATGTTTTGAAAGAGAAGCACTTATGTTGGAAAAAAGAGTAATCGGTGGAGACA GAACACATGTACAGAAATAGAACGGTTACTACATTATTGTGAAATTTTGAAATCGAGAACTATGT GTGATTGCTCAGTTAAGGGGGAGGAGGCTGAGAAGAATTTATTTCTATGAAATTTTATAACTTCA CAAACTTCAGTAAAAATATGAGGAATGCATCAACTTTTAATAATC i:9643632 original size:2 final size:2 Alignment explanation
Indices: 9643625--9643642 Score: 36 Period size: 2 Copynumber: 9.0 Consensus size: 2 9643615 GAGCAATACA 9643625 GT GT GT GT GT GT GT GT GT 1 GT GT GT GT GT GT GT GT GT 9643643 TCGTAAAGAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (2 bp): GT Left flanking sequence: Indices 9643125 -- 9643624 TGGATTTTTCAAAAATTCTCTTTGAAAAACTGGAAGTCTGGACAGCACTGACTACAGATTGGCAA ATGAAAGTAAAAAGGGGGCGGGACTAAATGTACATATGTATAGATGGTGTATACAAAAAAGAGAG TTCGAAGCTCGAACAATCCACTCCAAATCCACATTTATGAAAAAAGAAAACGACCAAATAATGGG AGTCTTTTAAAATGAAATGGACAAGAAGAAAAGCAGCAGAAAGTGCTCATCCTACCGTAGACTAC GTGTCACTCTCGGGGTGCCCCGCACAATTCGCATAATAATGACTCTCTCTTTTTCTCATCAAAAT GGTTATTATTTGGTCTGGTAACCATGGACATTTTGAAGAGCAAGAAGGCACAGAGAAAAAGCTCT TAGGACAAGCGGGACGAAAGCGCTTCGTGACGGTCAAAGTTTACCTTTTGGTAAGTTTTATTTGT CTTTTCTCCTTCTCCTTCAACTCCCACCTCCCAATGAGCAATACA Right flanking sequence: Indices 9643643 -- 9644142 TCGTAAAGAAAGAAAGAAAGACCAGTACTTTTCCGACTAGAACCACCATCTCCGAGCCCAACAAA AACTTGAAAATTGAGCCGGTCACAGGGTGGTCAAAAATAGAATTGGTGGAGACAAGTACGGTTTG CAACACACTCGAGTCCATCCCCAGGGGGCTCGCTTTCAAAAATCGCGCCTCCCAGAGAATAAATA AGGAGTCTATACTGTCTGTCAAATACCTTTGGATGTTTTGAAAGAGAAGCACTTATGTTGGAAAA AAGAGTAATCGGTGGAGACAGAACACATGTACAGAAATAGAACGGTTACTACATTATTGTGAAAT TTTGAAATCGAGAACTATGTGTGATTGCTCAGTTAAGGGGGAGGAGGCTGAGAAGAATTTATTTC TATGAAATTTTATAACTTCACAAACTTCAGTAAAAATATGAGGAATGCATCAACTTTTAATAATC TATTTAATCATCAACTCTTGTAAAAATTGTCAAAGGATCACAGAA Found at i:9643654 original size:4 final size:4 Alignment explanation
Indices: 9643647--9643663 Score: 34 Period size: 4 Copynumber: 4.2 Consensus size: 4 9643637 GTGTGTTCGT 9643647 AAAG AAAG AAAG AAAG A 1 AAAG AAAG AAAG AAAG A 9643664 CCAGTACTTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00 Consensus pattern (4 bp): AAAG Left flanking sequence: Indices 9643147 -- 9643646 TGAAAAACTGGAAGTCTGGACAGCACTGACTACAGATTGGCAAATGAAAGTAAAAAGGGGGCGGG ACTAAATGTACATATGTATAGATGGTGTATACAAAAAAGAGAGTTCGAAGCTCGAACAATCCACT CCAAATCCACATTTATGAAAAAAGAAAACGACCAAATAATGGGAGTCTTTTAAAATGAAATGGAC AAGAAGAAAAGCAGCAGAAAGTGCTCATCCTACCGTAGACTACGTGTCACTCTCGGGGTGCCCCG CACAATTCGCATAATAATGACTCTCTCTTTTTCTCATCAAAATGGTTATTATTTGGTCTGGTAAC CATGGACATTTTGAAGAGCAAGAAGGCACAGAGAAAAAGCTCTTAGGACAAGCGGGACGAAAGCG CTTCGTGACGGTCAAAGTTTACCTTTTGGTAAGTTTTATTTGTCTTTTCTCCTTCTCCTTCAACT CCCACCTCCCAATGAGCAATACAGTGTGTGTGTGTGTGTGTTCGT Right flanking sequence: Indices 9643664 -- 9644163 CCAGTACTTTTCCGACTAGAACCACCATCTCCGAGCCCAACAAAAACTTGAAAATTGAGCCGGTC ACAGGGTGGTCAAAAATAGAATTGGTGGAGACAAGTACGGTTTGCAACACACTCGAGTCCATCCC CAGGGGGCTCGCTTTCAAAAATCGCGCCTCCCAGAGAATAAATAAGGAGTCTATACTGTCTGTCA AATACCTTTGGATGTTTTGAAAGAGAAGCACTTATGTTGGAAAAAAGAGTAATCGGTGGAGACAG AACACATGTACAGAAATAGAACGGTTACTACATTATTGTGAAATTTTGAAATCGAGAACTATGTG TGATTGCTCAGTTAAGGGGGAGGAGGCTGAGAAGAATTTATTTCTATGAAATTTTATAACTTCAC AAACTTCAGTAAAAATATGAGGAATGCATCAACTTTTAATAATCTATTTAATCATCAACTCTTGT AAAAATTGTCAAAGGATCACAGAAAATTGCCAAAGTTTGACAGAA Found at i:9645168 original size:2 final size:2 Alignment explanation
Indices: 9645163--9645178 Score: 25 Period size: 2 Copynumber: 8.0 Consensus size: 2 9645153 TAGCGCGCCA * 9645163 GT GT GT AT GT GT GT GT 1 GT GT GT GT GT GT GT GT 9645179 TTCTCGCTTT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.06, C:0.00, G:0.44, T:0.50 Consensus pattern (2 bp): GT Left flanking sequence: Indices 9644663 -- 9645162 ACTTGAAAACATTCTAAATTCATATAGTATGTTCCCATTTCAATTCCTGATTCAAAAAGTTGGAT TTATCATACTGAAATTTTTTGTAGATTTGTTGAGTTTGACCAACTGATAATTTTTCAGAATTGTT GGTTCATTTTTCAGCAATTAAACGTGTTGTAGAATTCACTAAAATATGTAATTTTCTTAATTTTT GAAGATCTTTGATCCATGTATTGTTATCACCTTCTCCGAAGGATGGTCACTCCGTTCATCCCACT CTAAAGTCTACTTGGACTTTTGAAATGTTACACAGTTTAAAAGTTTGCTCAAGCTCTCTACGAGA TGCACATTTGATAACAAAGACGCAGACAGCTTGATGGCTACTACTGGTACGGTTGTGGAAAGTTG CATTGCACTTCCGTTTGCAAACACGCGTGGGAACGGGGGAAGAGAGAGGACAAAACGAAGATCTC TCCGTTTTGGGTCATTAGGTAAAAGTTATCGTACCTAGCGCGCCA Right flanking sequence: Indices 9645179 -- 9645678 TTCTCGCTTTTCCAAAGGACATAACAAGAAGGCGATCTGATCAGTTTTGAAAATACGGATAAAAA GTAGGTCGCACTTTGCAGAGATGATGAAGTTCGATGATGCGGCAGTTGTTGAAGAAGAGAAGAGG CCTTTTACGAACTAAAGGAGGCGATAAAAAACTCGCAATTAATGAAGTAGTCTTGTCCGTTAGAG GATCCTTTTTCTCCGAACTAATCAAGAACTACGCCCTACTTGTACTAAAAAAGGGTTATAAATCT TAGGTACAACCCTAAGATTTCAAATAGATACCTTTGAGGATTTGTATATGTGAGGTTTACCATTT TTAAATTGGAATACGCATAGGGGAACCTCTTCATAAGACTTGCTCAGAAGAGCCAACTTATCAAT ACGGCAAAAAATCAGTATAAATAAAAAATACCATGCACTTTCTGCAATTGCAGGTAACGTCAGTT GGGATATTGTTTATGACTTGTCAAAGTAAAATATTCAGGTGCAAG Found at i:9646580 original size:3 final size:3 Alignment explanation
Indices: 9646572--9646585 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 9646562 ATATCCGCGA 9646572 CTT CTT CTT CTT CT 1 CTT CTT CTT CTT CT 9646586 AAGTTTCCTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64 Consensus pattern (3 bp): CTT Left flanking sequence: Indices 9646072 -- 9646571 CTCCAATTTTCATATTCTATTTGAAATTATCAAGTGATATCTCTGAATATGATAAGGAAAATATA GACAAAGGTATACATAATGGATAAACTTATGGAATGATAATACTATTTGAATGAGGGAACCGGTT GTGTTGGAATTCCACACGAGAAGCATCAAATGCCGTAGAAAAAGAAAATTTGAATGATCATAGAA TATTGATAAGAAGATAAGAAGAAAGCCGTAATCGGATATGTATACTTGTCAAGTACAGACTACTT TTGTTTTTCTCAAAAATGGGTAAGAAGTTGTGTGTGAAGTAGGTCACTAAGTGAAACTACTGTCA TTCTCCTTTTCCATCTCTTTCCCCCATTACCTATCCCGCAGATCCGCGGCAAACCGTAAAAGGGC ACGCGATGTCCGGAGGGGACAGAGAGGTGAAAAAAGGAAAAGTGAAAGGATTACTGTAGATATGT ACCTACTGGTCTCGTGTTTCTCGAAGTCACAAACAATATCCGCGA Right flanking sequence: Indices 9646586 -- 9647085 AAGTTTCCTTGCGGAAGGAGGTCCTCCGAATCTCGACCCGCCGCCACTTTCATTTTCATTGCGAA CGAAAGATTGCCCTTTTCAGGATTACCCGTTTGTAGAATAAAGAAGGGTGAAGAAGTTGTATGTC CACAAAGCGGACAGCTATGAGAGAAAAATGAAATGAAAAACTACTGGAGAGTACATAGAGTATTA GAAAGGAAAAAAAAGTTTGTCTTCTAGTGAAAGAGCTGACTCACATGTGCTACCGTAGCTTTTAT TGACATCTTCTGTGTGACCGGGGGGATAGTTGAAGCTGTATGAATAGCGGAAACAATGAAAATGC CACGTCATTGGCCCATAATGTTTTGGTATCAAGTTACTCCAGTGATGTGCGAAATGATATTTGAA TTCGGGAATCTTTACGATATTGTTTGATAATGAAATCTTTATTGTAGACATTGTGAAAATGGCTC ATTATTTTTGTAAGGCTTTCAGTTTCAAAAATTATCAGTATTTTG Found at i:9646644 original size:6 final size:6 Alignment explanation
Indices: 9646633--9646645 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9646623 CCGCCGCCAC 9646633 TTTCAT TTTCAT T 1 TTTCAT TTTCAT T 9646646 GCGAACGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69 Consensus pattern (6 bp): TTTCAT Left flanking sequence: Indices 9646133 -- 9646632 TATAGACAAAGGTATACATAATGGATAAACTTATGGAATGATAATACTATTTGAATGAGGGAACC GGTTGTGTTGGAATTCCACACGAGAAGCATCAAATGCCGTAGAAAAAGAAAATTTGAATGATCAT AGAATATTGATAAGAAGATAAGAAGAAAGCCGTAATCGGATATGTATACTTGTCAAGTACAGACT ACTTTTGTTTTTCTCAAAAATGGGTAAGAAGTTGTGTGTGAAGTAGGTCACTAAGTGAAACTACT GTCATTCTCCTTTTCCATCTCTTTCCCCCATTACCTATCCCGCAGATCCGCGGCAAACCGTAAAA GGGCACGCGATGTCCGGAGGGGACAGAGAGGTGAAAAAAGGAAAAGTGAAAGGATTACTGTAGAT ATGTACCTACTGGTCTCGTGTTTCTCGAAGTCACAAACAATATCCGCGACTTCTTCTTCTTCTAA GTTTCCTTGCGGAAGGAGGTCCTCCGAATCTCGACCCGCCGCCAC Right flanking sequence: Indices 9646646 -- 9647145 GCGAACGAAAGATTGCCCTTTTCAGGATTACCCGTTTGTAGAATAAAGAAGGGTGAAGAAGTTGT ATGTCCACAAAGCGGACAGCTATGAGAGAAAAATGAAATGAAAAACTACTGGAGAGTACATAGAG TATTAGAAAGGAAAAAAAAGTTTGTCTTCTAGTGAAAGAGCTGACTCACATGTGCTACCGTAGCT TTTATTGACATCTTCTGTGTGACCGGGGGGATAGTTGAAGCTGTATGAATAGCGGAAACAATGAA AATGCCACGTCATTGGCCCATAATGTTTTGGTATCAAGTTACTCCAGTGATGTGCGAAATGATAT TTGAATTCGGGAATCTTTACGATATTGTTTGATAATGAAATCTTTATTGTAGACATTGTGAAAAT GGCTCATTATTTTTGTAAGGCTTTCAGTTTCAAAAATTATCAGTATTTTGATTTGATTGTGAAAT AAAGCTTGAACATTTTTATAGGTGCATTTTTACGAATTCGCGATT Found at i:9646751 original size:5 final size:5 Alignment explanation
Indices: 9646741--9646753 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 9646731 TATGAGAGAA 9646741 AAATG AAATG AAA 1 AAATG AAATG AAA 9646754 AACTACTGGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15 Consensus pattern (5 bp): AAATG Left flanking sequence: Indices 9646241 -- 9646740 AAAAGAAAATTTGAATGATCATAGAATATTGATAAGAAGATAAGAAGAAAGCCGTAATCGGATAT GTATACTTGTCAAGTACAGACTACTTTTGTTTTTCTCAAAAATGGGTAAGAAGTTGTGTGTGAAG TAGGTCACTAAGTGAAACTACTGTCATTCTCCTTTTCCATCTCTTTCCCCCATTACCTATCCCGC AGATCCGCGGCAAACCGTAAAAGGGCACGCGATGTCCGGAGGGGACAGAGAGGTGAAAAAAGGAA AAGTGAAAGGATTACTGTAGATATGTACCTACTGGTCTCGTGTTTCTCGAAGTCACAAACAATAT CCGCGACTTCTTCTTCTTCTAAGTTTCCTTGCGGAAGGAGGTCCTCCGAATCTCGACCCGCCGCC ACTTTCATTTTCATTGCGAACGAAAGATTGCCCTTTTCAGGATTACCCGTTTGTAGAATAAAGAA GGGTGAAGAAGTTGTATGTCCACAAAGCGGACAGCTATGAGAGAA Right flanking sequence: Indices 9646754 -- 9647253 AACTACTGGAGAGTACATAGAGTATTAGAAAGGAAAAAAAAGTTTGTCTTCTAGTGAAAGAGCTG ACTCACATGTGCTACCGTAGCTTTTATTGACATCTTCTGTGTGACCGGGGGGATAGTTGAAGCTG TATGAATAGCGGAAACAATGAAAATGCCACGTCATTGGCCCATAATGTTTTGGTATCAAGTTACT CCAGTGATGTGCGAAATGATATTTGAATTCGGGAATCTTTACGATATTGTTTGATAATGAAATCT TTATTGTAGACATTGTGAAAATGGCTCATTATTTTTGTAAGGCTTTCAGTTTCAAAAATTATCAG TATTTTGATTTGATTGTGAAATAAAGCTTGAACATTTTTATAGGTGCATTTTTACGAATTCGCGA TTCTTTTGGAACCAAGCTCGAGTGATGCGAGCAATTCCATTTACAGTTGTGAAGCTCATTAAATT ATTTTATTCAAATTTTAGGATATAAATTAGATACTCTAAGCTTAA Found at i:9651628 original size:3 final size:3 Alignment explanation
Indices: 9651620--9651632 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 9651610 GATTTTGATG 9651620 TCT TCT TCT TCT T 1 TCT TCT TCT TCT T 9651633 ACGAGCAGAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69 Consensus pattern (3 bp): TCT Left flanking sequence: Indices 9651120 -- 9651619 AATCCGGAGCTCGTATTTTGTGCATGTTGTTCTTGAAAGAAGGGCACGAGTCCATCGGCGTTTTG AAGTTGTCGGTTTGTTTGAATGTCCCGCCAACATTGGTAGTTGCTGAAAAAAACATGATTGTTTT GATAGAAAATATCTAGCTGAAAACAAGAATGAGGAAAACTCACTGAAGAATCCATTCGCTACCAT TCTCTTAGCAGGCTCTTCTTCACTCCATGGCTCTTTAACTTCTTCCTTCTTTTCTTCCTTTCTCT CTTCTTTCTTCTCCTCTTTTTTGTCATCCTTCTTCTCATCTTTCTGATCATCCATTCTAGTAGTT CCTTCACTTTGTCCTGATGATGATGGTTGAATAGTTTCACGAGAAGTGAATCCATTTCCCTTTGG TCCACGACTTTTTCGAGTTCTTCGACTTTTTTGACTTTTCTCGCCTGCCGGTTTCTTCTGTTTAC TTTTACGTTCACTTCGAATTGATCGATCATTTCCTGATTTTGATG Right flanking sequence: Indices 9651633 -- 9652132 ACGAGCAGATTTTTGAGATCTTTCCATCTGAAGGGTTAAAGTTATTGTAAATTTAAGTAGGCATA GTATAGGCAAGTAGGCAGGAGCGTAGGCAAACAGGTATGATACAGGTGTGTATGCCTTCGTACGT ACTTGCATTCACATTTTCCGCAAAACTTGAAAACCGGAAAACCTTTGCTATTTTAGTTGAACCGC TTACCTTGAGACTATCCGATTGAGAAATAAATAAATAAATTTTGAAAACTAACTTTTTTACACAT CAGATTCTTATCAGTTGATTTTTGAAAATATTGTGATTAAAATTTAAAACGTGAACTTTTTCAGG ATATTTTGGTACTAATTCAAATTTTAAATAAATATTCAAGGTAAGTGGCTGAAACGTGACAAACC AAACATAAAACCAATTTTTTCCCGCTGCTACGTGGCAAGAAGCTCTCACCTTTAATCACCACAAA ATAAATTTATTTCAACTTTTAAAACTTCTCGTGCAAAGTTTATCA Found at i:9651861 original size:4 final size:4 Alignment explanation
Indices: 9651852--9651867 Score: 32 Period size: 4 Copynumber: 4.0 Consensus size: 4 9651842 TCCGATTGAG 9651852 AAAT AAAT AAAT AAAT 1 AAAT AAAT AAAT AAAT 9651868 TTTGAAAACT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 9651352 -- 9651851 ACTTCTTCCTTCTTTTCTTCCTTTCTCTCTTCTTTCTTCTCCTCTTTTTTGTCATCCTTCTTCTC ATCTTTCTGATCATCCATTCTAGTAGTTCCTTCACTTTGTCCTGATGATGATGGTTGAATAGTTT CACGAGAAGTGAATCCATTTCCCTTTGGTCCACGACTTTTTCGAGTTCTTCGACTTTTTTGACTT TTCTCGCCTGCCGGTTTCTTCTGTTTACTTTTACGTTCACTTCGAATTGATCGATCATTTCCTGA TTTTGATGTCTTCTTCTTCTTACGAGCAGATTTTTGAGATCTTTCCATCTGAAGGGTTAAAGTTA TTGTAAATTTAAGTAGGCATAGTATAGGCAAGTAGGCAGGAGCGTAGGCAAACAGGTATGATACA GGTGTGTATGCCTTCGTACGTACTTGCATTCACATTTTCCGCAAAACTTGAAAACCGGAAAACCT TTGCTATTTTAGTTGAACCGCTTACCTTGAGACTATCCGATTGAG Right flanking sequence: Indices 9651868 -- 9652367 TTTGAAAACTAACTTTTTTACACATCAGATTCTTATCAGTTGATTTTTGAAAATATTGTGATTAA AATTTAAAACGTGAACTTTTTCAGGATATTTTGGTACTAATTCAAATTTTAAATAAATATTCAAG GTAAGTGGCTGAAACGTGACAAACCAAACATAAAACCAATTTTTTCCCGCTGCTACGTGGCAAGA AGCTCTCACCTTTAATCACCACAAAATAAATTTATTTCAACTTTTAAAACTTCTCGTGCAAAGTT TATCAACATGAAAAAACAATCAAAATCCACCATTCAAGCGCAGATCTAAAATCGGAGCTCACATT TGTATTGTGGGTACTGATGAATATATTCTTTTTTCAGGAAAGTTCAATTTCTGCAAAGGAGAATG ATAGTCAATCGAATAGAAGCCGTGAAAAAATCGCCCCAAAATCGGAGGGTTTAGTCACAGGACTT GATGAAACTGAATGGAAATCAAGGATTACAACTCCGGAAATTGTT Found at i:9654696 original size:6 final size:6 Alignment explanation
Indices: 9654685--9654697 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9654675 TTTTGGCTTC 9654685 TTTCCG TTTCCG T 1 TTTCCG TTTCCG T 9654698 GACTCAGACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.31, G:0.15, T:0.54 Consensus pattern (6 bp): TTTCCG Left flanking sequence: Indices 9654185 -- 9654684 TATCACTTATGTGATTATTATCCTAAACTGTACGTAAAGTAGAGTAAAAGTACGAAAAAATGAGA GAAGTATTTTATTCTGATAGTGAGAAAAAGAATAAAATCAATATCAAAGTTCAGATCAAGAAATC TTGATAATCCCTGCATTCTCTACGGCCTTCTTCTTTTCAGGAACTTCAATCTCAACTGAAGATGT CGTCACAGTCTTCTTATTGTCTTCTTTACCAGGTGTCAATCCGCCATTACCTGCATCTGGAGTTG TTGTTGGAGCTGGCTTCACGATCTTCTCATTCAACTTGTTCTTCCCATCCTTTAAGGATGTTTCA GTTCCCTTCTTTTTCTCCTTTTTAATCTTTTCTTGTTCTCCATTGTCAGGCTCGGAATTCGTACG CTTAAACAATTAAATTATAAATCTAAAAAACAATAAAAGAGTACCTCTGGTTCATCTTTCGTTGG AGCTGGTAGATCTTGTGACTGCGTCGTAGCTAATGTTTTGGCTTC Right flanking sequence: Indices 9654698 -- 9655197 GACTCAGACAATAGAGGTTTTGTGACAGTTTTTGAAGGTGTCTTTTTCACGTTTCTGTCCGATCC CTTCTTACTGAAAGTATATTAAATTGGAAAAGGAGGGATGTTATTAGGGACAAAAAGGGACGTCC CGTGCGACAGCGGACTACAACCGGATAAATAACCGGACAAATGGTTTGCCCGATATTTTCCCGCT GTTCCCGGAACTCCCCGTATGCTCATAACAGCCTCACTCACTTCTCAACAGATTTATCTCCACCA TTGGGAACTACTTCCTTCTTCTTCTCGTTTGATCCTTTTTCTGATGGTGCAACGTATCCTTCTCG TGATCCTGTATACACATTTGTATCTGGTTTATCTGTCAGATCTGATTCTATAGTAGGAGAGGTTG TTGCTTCTTGATTTTGAAGCGGTGTTTTTATGTGAGTTTCGTGAGTCAATGATGTGAAATTCCCG CTGAAAATTGCTTTCTTTTTCATTAAAAGTGAAGCAATTGGATGT Found at