TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:5320444 original size:6 final size:6 Alignment explanation
Indices: 5320433--5320447 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 5320423 CTATTCGGTC 5320433 TCCCAT TCCCAT TCC 1 TCCCAT TCCCAT TCC 5320448 TACAAATTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.13, C:0.53, G:0.00, T:0.33 Consensus pattern (6 bp): TCCCAT Left flanking sequence: Indices 5319933 -- 5320432 TTTAAAACTTATCTTATTTCAGAACGAAACATTCTGTCGTAATGTTAGTGCCTATTATGATGACA AGGATATTCAAGCAGCCGCCAATCATTTTTACTTCATCTCCTCATTGACTCTTTTGTGCCCATCT TTGGTAACTACGTTGCTGTTGGGAGCAGGTAATTTTATTTTCTGTTTCACAAAGTTTACAGGATG CTGGAACAACTTTTGGAACAACTTTTGGAACAATTTTGGAACAACTTTTGTATTCTTTTCTGCGA AAATTGGAGGTTTCTCCGAGAAGAAATGGGGAAAAAATATTGTTTGCTTGCCCTAGTATATCTTC AAAATCAATAAATCTGCAAACAATGAAAACAAAAACAACTATGTCCCTTACAACAACTCTAGTTC TCAGTTAACTAAATCCAAAAAAAAGCGCCGTCATAATTTTCACCGTTTCCTGCTCACTATCAGAT ATTCTCCGGAATTCTCCCCACATTACATCCATCATCTATTCGGTC Right flanking sequence: Indices 5320448 -- 5320947 TACAAATTCAACGGGTTCTCCATTTCAGCCACCGACTACTGGAGTATCAAAATTCCTCTGATCAT CCCATACATTGGATGCATTCTTGGCACCATCAATTACGTGTTTCAGTCGTATTTTATTCACACTT CGGTCTATTTTCTGCTTATCAGTGATGCGCTCTTTGGCCTTTGTGGTGGCTTCATTGCAATTATA TGTGAGTTTGTGGTTACTGTTTCAAAAAAAAATAAATACGAAGAAGTGGAGAGTGACGGAATAAT TGTTTGAAATCAAATTTATATTTTAATGAGTTTTGAAACAGTATTATTATAACTCCAACCTATTA GAATTAAATTATCCCCTATTAGAATTACATTATAGGAAAGTGAGTACAATATAATTTCAAGAAAA TAATAACCTAAATGTTATTTCTGTTACAGCAACTACTTTAACATATGGAGTGAAAACAAGTATGC TTCGCTATCGTAGTTACCGTATTGCTGGAGTCGAAGGAGCTATCG Found at i:5323545 original size:6 final size:6 Alignment explanation
Indices: 5323526--5323552 Score: 40 Period size: 6 Copynumber: 4.5 Consensus size: 6 5323516 TAATTCTTGA * * 5323526 AAATTT AAAGTT AACTTT AAATTT AAA 1 AAATTT AAATTT AAATTT AAATTT AAA 5323553 ATAAAACTAA Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 6 17 1.00 ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41 Consensus pattern (6 bp): AAATTT Left flanking sequence: Indices 5323026 -- 5323525 ATGTTAACAAAAAGTGTTACCAGCAAATAATGGTAGATATGCGGAATAAAATTTTTTTAAAACCG TAGCGCGGTCAAAATTTTCTAAAATCTGCTTACACGGATTTGATTTCCCTGATTAATTTTTTCCC CAAAACGCTCAATCAATTTGGCATACTAATACTTTATGAAACAGTGCATATTTTCTAAAAATAAT TTGTTTTGGAAAACTTTTTATTTAAATCTATTAAATTTTTTTCAGTAATTGTAATGTTTAATCGA TTTGTGTCAACTGGATTCCGTGCATTCATTTCATCTCTAATCGATATGCAAGAGCAAGGTATGTT GTCAAGGTTGTGGTATTTTTCGATTAAACTTATGTATTTTGATTTCCAATCAGTATTTCTTAAAG AAATTGATGGTGAACCTGAAATTTTAAACACAATATTTCATGAGTTTGATAAATTTAAATGATTG TGGAGACTTATAAAAGTCTTTACAGTTTTTACAGATAATTCTTGA Right flanking sequence: Indices 5323553 -- 5324052 ATAAAACTAAATAAAATTAAAATTGAAGACGAAAACGTTTCCATGACTCAAAAATTCATAACGCG AATGATTTCGAACTAGACGAAAAGTTGGTCTGTTTAAGTTTTTCCGCAGATTTCTATAATAATTT TCGAAGTGGCGACACCTTTTACTATTCAAAAAACATTTTAATTTTTCTGGAGTACTTCAAGGATC GGGAGTTTTATTTTTACAGAAACCCCAAAACATGAGAGAGCAACTTGAAACATCATCTGATTTTT TTTTCTCTGGAGAAAGGTTCTTCGTGTTTTTTTGTTGAGGAAATATAATGTTTGCTTTGAAAAAA AAAATTGAATTTAAAAATTAACAAAAAATGTACAACTTCGGAAAACAGTTTCTTAACTATTTCAT AGTTTATTTCTTTAATTGGCACTATATTCAACTGATAAGCCAGACAATTTTCTGGAATCCATATT ATTTCATCCTAAAACTTCTGACAAATAAAGACAACTTGAAACAAT Found at i:5325309 original size:6 final size:6 Alignment explanation
Indices: 5325298--5325311 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5325288 TCTAACTTTT 5325298 TTGGAA TTGGAA TT 1 TTGGAA TTGGAA TT 5325312 TCACAATAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43 Consensus pattern (6 bp): TTGGAA Left flanking sequence: Indices 5324798 -- 5325297 AGACTTCGTGGTCCGAACTCATCGTCCAGAAGTCTCAGAAGGAATCCTTAATAGTCGAAATGACG TCATTGATGAAGATGGGTCAATCGAAGATTTATCTTATTAACAAATCATTCCTTCCTCTTCTTTA AAAGTTCAATTTTCTCCTAATCAGACCAGATTTGCGGGTTGTCTGTGTGTGTATATATAAACATA AAAACATGATACCTTCTCAATGAACTATTTGTTTTTGTTAATTCGTTCGACAATCAAAAACATTC ATTTTCGCTCGCAGCTTGTTTTCTACACACTTTTTTTGCAGAATTTTGCGTTTTTGTTTCATCGG GCTTTACAATATGATCAATCATGTGATTGCTATGATCTTCCTGATCAAAATATCGGGGAGTTTAA TTATATGACATTGTGAGAATTCTGAAGGTTCTATCAGTTGTAAGTTTAATTCTAACAGTTTTTCT CATAAAAAACTGTTGTTACGGTTGTAACTGTTTTATCTAACTTTT Right flanking sequence: Indices 5325312 -- 5325811 TCACAATAAACACTTGAAGTTTTTAGCAATCACTTTTTTATTCAATAAAAAATGTTTCAAGATTT CTATCTAGTGTGAAGTCGTAAAGTTCTCTTGTTATGTTACATAATTTTGCTAAAGGTAATTATAA ATTAAAACATTTTTTACTATATTTTTAATCTATTTATTATAAAGCGAGGTGGAAAAATATGAAAC TACCCTATTTTTCATTTATTTTTTTAGTTTTATAACATGTTTATAAATGGATAATCGTTAGTGGG GATAGAATTCCTGCGTAAATTAATTACTTGATTTTAACATTTTATTTCCTTTTCTACTGTTATAT GATTCGAAATATCTTTTGTAAAATTTTCACACATTTTCCGCAAAAAAATTAATTTCAGATGAATT TTCAGTAAATTTCATTCGGATATCCAAATTTTCTTAAAGAAAACATTTTTCAATTAATTAACAAT AAGAAGAACGGATTTAACCAGAAAACGTAAAAATGTCGAAAGTCA Found at i:5327909 original size:6 final size:6 Alignment explanation
Indices: 5327898--5327910 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5327888 ATTTCATAAA 5327898 AGTGTC AGTGTC A 1 AGTGTC AGTGTC A 5327911 AAGAGCTTGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31 Consensus pattern (6 bp): AGTGTC Left flanking sequence: Indices 5327398 -- 5327897 AATAGAATTGTTCTCTAAAAATATTTTTTAACATAAAATATGCCATATTTGTGATTCTTATTTAA GTATTTGCTTCAATGGAAACTCGTACATATAAAGTTTCAGGGTGTTGCATATTCAGCCGATTTTG CTGCAATTGGAATCGTTATTTCAAAGTGGGCACCACTCGATGAAACTGCAATTTTTATTGCCACT CTAACTTCTTTCACTTCAATTGCTTCGATTATAACAAATGGAGCAAGCGGTGTTGTGAGTTGACA GCTAAATATAATATTCTTCTAAAGATCAACAGTCCATTAAATATGTTTTACAATGTCAAAATAAT CTTATTGGCACAGTGAAACAGTTTTAAATTATTTGTAAATAATAACACTTTCTAAGTTTCACAGA TTTGTGACACTTTGGGTTGGCAATGGAGTTTCTATTTCCACTCAGCCACCTGTCTTCTCATCTTC TGTTGCTGGGTTCTCATCTATCAAGATGATCCAACATTTCATAAA Right flanking sequence: Indices 5327911 -- 5328410 AAGAGCTTGGATGGATTCAGAAGAACAAGTCAGAAGCTCATATAAAAGTTGGAATGAAGGTTCCG TACAAGGCAATTTTCACAAGTCCAGTTGTCCTTACTGTCTGGTTATGTGCATTCACAGAACTCTC CACGTTGATTCTCATTGCCACGTATGGTCCAATTTATTTCAGAAGTGTTTTAGGATTTGATGTGA GTTTTAATAATTTGTTAGTTATGACAGTTTCATTAAGATCAAAATAATTGGATTTTATCTGGGAA TTATGATTGCTATCCATCTCCCATTCAGATTTGTATGCGCCTTTTTGAGTGATAAAACGAAGTGA GTTTGAAAAAAATATAAAATTTCCAATGTTTCAGATAGTTTTTCAAGAGTTTGCTCTTTTTATTG CATCTATTCTACTGTTGTTCAAGAACATAGCCAAGCGATTGTTTTCCGGCAAATTGCAGTTTTTA AATAATTTAAAAACTAAAAATTATAGTTATATTCTGTACTTTTGC Found at i:5329396 original size:5 final size:5 Alignment explanation
Indices: 5329386--5329399 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 5329376 AAAAACAAGT 5329386 TCAAC TCAAC TCAA 1 TCAAC TCAAC TCAA 5329400 AACTTCTACT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21 Consensus pattern (5 bp): TCAAC Left flanking sequence: Indices 5328886 -- 5329385 CAAAATGTATTTCTCTATTTTCTGGACCAGCTCTAGTTGCATTTTTTGTAACGGATGAATCAAAT CAAACACAATGGAGTCACGTTTTTATGACACTTGCAGGATTTTCATTTGTGGTTAGTTCAAGGTT TTCTGCAGCCGACAATTTTCCAGATTAGCCTAAAAATGGTGTGCTTACTGTTTCGTCTTTATGAG TATTATTCAGGCCAATATTCTCTCATTCATATTTTTCACGGATAAACCGGCCAAATGGACGGAAG ATGATGCAGCTGTGAAGTATTCGAAAAACGAAGACGTTGTTAAAATTTAATACTAATATATTTTT TTGTAAATTGAAAGAGTCCACGGGGTCGCCAAAGATCTGTTATACTGTCAAAAATTGTTGAGTAG TTTAAATTTAATTTCCTGTTTCAGCGTCATTATTTTTTAATAATCTTCCGTTAAAAAGTGATATC AGAAGTGATGTTTTCGAAAAGTCGAGGAAATGTTTAAAAACAAGT Right flanking sequence: Indices 5329400 -- 5329899 AACTTCTACTGTTTCAGTATGATGTTGAATTTCAGAGAAAATTTGCACTCATACATGTATTGTAT TTCAACTTAAAGTTGGCGGTTTATTTAGGAACGCAGATTTTTTTGTTTCTTTTTTTAATTTGTGA TGTTTCGCATAGTCCTCTTCTTCTTCTGAGAAAAACTCCAATTTTATATGCCTTTATTTTAAAAG TCAATTTTTGTGAGAGTGAAAACTGTAAATATTTTTGTTTTGTTTGAATAAAATTCCCGAAATTT TGTTTTTTTTTCATCACATGAACTTCTGTGGTGTTTTTTGCGGCTGTTCGTTTACATCCCGTTAG AAACTAAAAAATCGTTATGTTTTACCAGCTAAAATTAAAAAAAACTACTTAATGATGCAAATATT CGTTCATCGTAATTTCAGTTCTATGAAACAGTATAATTATTCAATGACAATAATCGTGAAACCAT TCATACGGAAGGTAAATTGTGAAAAACTATCCAATTTTTTCCACT Found at i:5329637 original size:5 final size:5 Alignment explanation
Indices: 5329627--5329639 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 5329617 CTGTAAATAT 5329627 TTTTG TTTTG TTT 1 TTTTG TTTTG TTT 5329640 GAATAAAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (5 bp): TTTTG Left flanking sequence: Indices 5329127 -- 5329626 CCGGCCAAATGGACGGAAGATGATGCAGCTGTGAAGTATTCGAAAAACGAAGACGTTGTTAAAAT TTAATACTAATATATTTTTTTGTAAATTGAAAGAGTCCACGGGGTCGCCAAAGATCTGTTATACT GTCAAAAATTGTTGAGTAGTTTAAATTTAATTTCCTGTTTCAGCGTCATTATTTTTTAATAATCT TCCGTTAAAAAGTGATATCAGAAGTGATGTTTTCGAAAAGTCGAGGAAATGTTTAAAAACAAGTT CAACTCAACTCAAAACTTCTACTGTTTCAGTATGATGTTGAATTTCAGAGAAAATTTGCACTCAT ACATGTATTGTATTTCAACTTAAAGTTGGCGGTTTATTTAGGAACGCAGATTTTTTTGTTTCTTT TTTTAATTTGTGATGTTTCGCATAGTCCTCTTCTTCTTCTGAGAAAAACTCCAATTTTATATGCC TTTATTTTAAAAGTCAATTTTTGTGAGAGTGAAAACTGTAAATAT Right flanking sequence: Indices 5329640 -- 5330139 GAATAAAATTCCCGAAATTTTGTTTTTTTTTCATCACATGAACTTCTGTGGTGTTTTTTGCGGCT GTTCGTTTACATCCCGTTAGAAACTAAAAAATCGTTATGTTTTACCAGCTAAAATTAAAAAAAAC TACTTAATGATGCAAATATTCGTTCATCGTAATTTCAGTTCTATGAAACAGTATAATTATTCAAT GACAATAATCGTGAAACCATTCATACGGAAGGTAAATTGTGAAAAACTATCCAATTTTTTCCACT TTTTTCTAACTTATCCCCTCCCCTCCTACTACATAGACATTATTCAATTTTTATTCAAGCCTACC TAATGCCTATTTGCCTATTTCTTTTTAATTGTGTCAACAGAAAACTGATCGTTCTTTTAATTAAT GAGTTTTGAACCAGGAATATAAATTTTCGAGATTTGATTTGTCAGCGACAAGAAGATTTACTAAT GATTCTGCAACATTCATTTTATCATTTCATGGCCTGGGTAATATG Found at i:5329923 original size:5 final size:5 Alignment explanation
Indices: 5329913--5329925 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 5329903 TTCTAACTTA 5329913 TCCCC TCCCC TCC 1 TCCCC TCCCC TCC 5329926 TACTACATAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.00, C:0.77, G:0.00, T:0.23 Consensus pattern (5 bp): TCCCC Left flanking sequence: Indices 5329413 -- 5329912 TCAGTATGATGTTGAATTTCAGAGAAAATTTGCACTCATACATGTATTGTATTTCAACTTAAAGT TGGCGGTTTATTTAGGAACGCAGATTTTTTTGTTTCTTTTTTTAATTTGTGATGTTTCGCATAGT CCTCTTCTTCTTCTGAGAAAAACTCCAATTTTATATGCCTTTATTTTAAAAGTCAATTTTTGTGA GAGTGAAAACTGTAAATATTTTTGTTTTGTTTGAATAAAATTCCCGAAATTTTGTTTTTTTTTCA TCACATGAACTTCTGTGGTGTTTTTTGCGGCTGTTCGTTTACATCCCGTTAGAAACTAAAAAATC GTTATGTTTTACCAGCTAAAATTAAAAAAAACTACTTAATGATGCAAATATTCGTTCATCGTAAT TTCAGTTCTATGAAACAGTATAATTATTCAATGACAATAATCGTGAAACCATTCATACGGAAGGT AAATTGTGAAAAACTATCCAATTTTTTCCACTTTTTTCTAACTTA Right flanking sequence: Indices 5329926 -- 5330425 TACTACATAGACATTATTCAATTTTTATTCAAGCCTACCTAATGCCTATTTGCCTATTTCTTTTT AATTGTGTCAACAGAAAACTGATCGTTCTTTTAATTAATGAGTTTTGAACCAGGAATATAAATTT TCGAGATTTGATTTGTCAGCGACAAGAAGATTTACTAATGATTCTGCAACATTCATTTTATCATT TCATGGCCTGGGTAATATGATAGTGTGTGTTCTTAAACTGACATGTTCAAAATCTTCATTATTCT ATTTTGCAAAAAAAAAGTCCTTGTTTCCTAAAATATTTTTATTTTTCTAAAACAAATCCAAAGTA ATTTAAATTGAAATAAAAGTTGCCACGGAACTTAGCAGATAGTGGTGTAAGGCAAGTTTGGCAGA AGATGTTTCTTCAAATAAAACACAGTTTTTAATTTATTTCAAGTAGACCAATTGAAACACGTACT GCTTATTCAACATATATTTCTACTTATCATCATAAAGTAACGATT Found at i:5330230 original size:6 final size:6 Alignment explanation
Indices: 5330219--5330231 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5330209 TTTCCTAAAA 5330219 TATTTT TATTTT T 1 TATTTT TATTTT T 5330232 CTAAAACAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TATTTT Left flanking sequence: Indices 5329719 -- 5330218 CGTTAGAAACTAAAAAATCGTTATGTTTTACCAGCTAAAATTAAAAAAAACTACTTAATGATGCA AATATTCGTTCATCGTAATTTCAGTTCTATGAAACAGTATAATTATTCAATGACAATAATCGTGA AACCATTCATACGGAAGGTAAATTGTGAAAAACTATCCAATTTTTTCCACTTTTTTCTAACTTAT CCCCTCCCCTCCTACTACATAGACATTATTCAATTTTTATTCAAGCCTACCTAATGCCTATTTGC CTATTTCTTTTTAATTGTGTCAACAGAAAACTGATCGTTCTTTTAATTAATGAGTTTTGAACCAG GAATATAAATTTTCGAGATTTGATTTGTCAGCGACAAGAAGATTTACTAATGATTCTGCAACATT CATTTTATCATTTCATGGCCTGGGTAATATGATAGTGTGTGTTCTTAAACTGACATGTTCAAAAT CTTCATTATTCTATTTTGCAAAAAAAAAGTCCTTGTTTCCTAAAA Right flanking sequence: Indices 5330232 -- 5330731 CTAAAACAAATCCAAAGTAATTTAAATTGAAATAAAAGTTGCCACGGAACTTAGCAGATAGTGGT GTAAGGCAAGTTTGGCAGAAGATGTTTCTTCAAATAAAACACAGTTTTTAATTTATTTCAAGTAG ACCAATTGAAACACGTACTGCTTATTCAACATATATTTCTACTTATCATCATAAAGTAACGATTA AAAATGATAATTATTTCTTTACTGTTACACTACTCTCAAACGACCCCACATTAAACCAGGAGGTT ATATGTCAGGTACAATTACAATAAAAACCAATACGTAATGATGATTAAACATTGAAATGTTCAGT TGTACCGATTTTTAATCGTATATCGGCATTGAAAGACGTAGATCATGCGACAAATTGTTTTTTTT TTGACTTTTACTCTTTTTCTTGTTTTTTTTCACATCCCTAAAAATAATGTATACTTATTTCGAAT GTATACTTATTTCGTTGCAATTCAATTTTTGTACTGTCCCAAGTT Found at i:5333925 original size:6 final size:6 Alignment explanation
Indices: 5333910--5333928 Score: 31 Period size: 6 Copynumber: 3.2 Consensus size: 6 5333900 ATTGAAAGTA * 5333910 ATTTTG ATTTTT ATTTTT A 1 ATTTTT ATTTTT ATTTTT A 5333929 GAAATATGTG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74 Consensus pattern (6 bp): ATTTTT Left flanking sequence: Indices 5333410 -- 5333909 CAGGGCTTTACATAGCCAATTTTTGTTCCATTTAACTATCAAAACCATGACGGAAAGCTTTTTAT TAGATACGCGTGTAGGCTTGAAGGTAGGTAGGCAGGCGATAAGCGTGAAACAAAAACTTGGATGT CTTGTTACATCCCTAAAAACTCATAAATCTTCGATAATAAATGTTGTAGAATTTTTTTAAACAAT CAGCTGTTCTCATTAAAAAATGCTTCATTTTCTTCAAATCACCGTAATAAATCATTATCAGGATT TCATTTTTCTTTATCACTTGTGTCTCATATGATTGTTAATCATTCGTCAGACTAAAAGATAATGG AAACGTGACTTGGAGATGATGGGGGGAAATTATATTTACCTTCTTATTTGATGAATCCGGATGGA ACATGTCCGGAAGGTCTTACTGGGTATTTATATTCGGATAAGCAAAGAACAGGAAAAAATATTTT TCAAACTGGATCCCATCATTCACAAGAAAGCAACCATTGAAAGTA Right flanking sequence: Indices 5333929 -- 5334428 GAAATATGTGAAACAGTGAAAAAACTTCAAATCTAAATTTTTAAAGTTTTCTAAAATAATGGAAT TTCGTGTGTAATTTAGTTCGAATTCAATTGAATAATTGAAAATTCATCCTTTTGGAATGATCCAT TATTTTCAGACAATCAGAAGCATGTATGACTATACTCCAACAGAAAAGAAGCATATTCTATGGGC AGTTTCATTTGGAACTATCGTTGGTATATTCCCTATTAATATGCTTTACGTTCAATGTGGGGCTA GGTTCGAACAAGTTTATTTTAGTTAATATTTTAAAATTGCATTTTCAGACTTGCATTCTTCTCCG CCGGACTTTTATCTGCAATGACGACTGCGTTTACTCCGTGGGCGGCGAGCCAATCGATGTGGTTT TTGGTGGCTTTAAGGTTCTTACAGGTAAGGATTATCTTCAGGTATTCTAGGAATTATTCTGAAAA GTGTACAGATAGGTAACACATCTTGAATAAAACAAGAAATATTCA Found at i:5337757 original size:3 final size:3 Alignment explanation
Indices: 5337749--5337761 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 5337739 TCTGTGAGCG 5337749 TCT TCT TCT TCT T 1 TCT TCT TCT TCT T 5337762 TTCCCATTCT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69 Consensus pattern (3 bp): TCT Left flanking sequence: Indices 5337249 -- 5337748 TTTTTTAAGTTGGGAGAAAATGTTTCGGATTCTTTTGAAAAATCATAAAATTTCCAAAAAGCTTT CAGGTTTTTTACCTACGTTAGACTTTTTTTCGATTTTATCGGTTCGACATTATGATTGAATAAGA AAAGTAAAACTATCTTTATGCCCAATGTGAAACATTATAAATTTTCTCATCTGATTTGGTTTTTT TATACAATAACAATTTCGTTTTAATTTACGTATAATTAAACAATACTTTCAATTTCATTTTTTTT TATCTGAAAATAATTTCATATCCAGAAGTTTGCAAGATTTTTCAAGGAAATTTAGAATCCCTTTC TCTTTTTTCTGCTCGATTCATTCAACTAATGAGCCATGGAAAGAAGATTCAGAAGAGAAAGATTC GTTGAAAAATCCAGGCTCTCATCTCGAAAAAGAGCATAATGAGTCAGTTTTTGTATCTGTTTTCT CTACTTTTTTTCTCACAAACAAGACACTAACATATTCTGTGAGCG Right flanking sequence: Indices 5337762 -- 5338261 TTCCCATTCTTCACTCCTTCTATTCATTTATTATTTGCCCCCGTGAGAAAACTAATTTCATTTCT CTTTTTCACGTGATTATCATATTTGATGAGCGCGACAAGGCCTATGTTAACAGACAAAAAACCGC CCCCGCACTTTTGACAGAAATCAATCTATCAACACATGTCCAAAGTCTAACACATTATTCATTTT TGGGTACTTTTATTTACAATTTGTAATAAAAAATTTATCTGTTTCAACTTTTTTACAACTTTTCA GCAGATTTTTGTACAAGTAATAAGTTTCTCAAATTTCTCAAAAATTTTAACGAGAGCAACTTTTT AATCCATTCAACATAGTCTTTTTTGTCACGTATTTGGATTTTTTTAAGCAGTAGGAAAGTTTCCG TTTTTATAGTTGGTATTGATAATGTCTTCAATTAACATCTTCAAAAAGGTTACAATGTTTATTGT TTCAAAGCGATGTTTAAGAATTTACTGATTTACTGATTTACTAGT Found at i:5340251 original size:6 final size:6 Alignment explanation
Indices: 5340230--5340253 Score: 30 Period size: 6 Copynumber: 3.7 Consensus size: 6 5340220 CAAGTTCTTC 5340230 ACTTTG ACCTTTTG ACTTTG ACTT 1 ACTTTG A-C-TTTG ACTTTG ACTT 5340254 GCTTGAATTT Statistics Matches: 16, Mismatches: 0, Indels: 4 0.80 0.00 0.20 Matches are distributed among these distances: 6 9 0.56 7 2 0.12 8 5 0.31 ACGTcount: A:0.17, C:0.21, G:0.12, T:0.50 Consensus pattern (6 bp): ACTTTG Left flanking sequence: Indices 5339730 -- 5340229 TTTTTCCTAGTTTTGGATACAGTCGAACTCCGTTTTATATTTGAATTAAAAAATCGTTTCTCAAT TCTTCTGCCGTGTTTCCATACCGAAAACTAGATAACCCTAATAAAATTAGCTGAAATTTTGAAAC TGAACTAAAAATCGATAAACTAACAGTTATTTTATAAATTTTTAAAATATTCTCTCAAGTTAAAA AAAACATTGTATTCTAAAATTCCATTAATTCTTAAATAAGTTCTGATCTACAAAGAATTTTGAGT TTTGACTTTTCTTCGAAACTATTGTGTTACATCAGCAACGCTGTCTGGTACATTCTGATTTATTA CTTTTTCAATGTTTTTTTTTCATTTTATTTTCTTCTTTTTCTAATGGTACGAACCAGTTTAGAAA ATATGTAATGGTGTGATTTTCTAGAAAATCGAGAGTAGTTTTCAATATTTATAGATTCACTACTT ATATTTTGATGAACGTTTCTATTTCAGAGCAGTTACAAGTTCTTC Right flanking sequence: Indices 5340254 -- 5340753 GCTTGAATTTTAATTTCCACATGAGACAGTAATTTTTTCCTAGTTTATCTGCTGATAGGAATATT TTACTGGACGCAATTTTACCCAAAAGGACTTTCTGAAATAGTATCCTCTTTTCAACTTTAGTTAT GGTTTATTCCTGTTTTGTCACAAATATTTAAAAAAATATCTGAAATAAATTAAGTGACGTGGCAT TTCAACCTACTAAAGTACTACTAATACGTGATCATCAGGGCATAGTTCAAGTCAAAAGGCACTTG GTCTTCAGATGATTTTATGTTTTTCTGTCCTTCCTCCCGCCCCATCAACTTTAAAAGTGACGAAT AGAATGTGGTGGAAAGGTAGATATATTGTCGTGTTTTCGTAATGCCCATTTCAGCGCCATTTTAG AAAATTTTGTTGGTTTTCTCTTTGCTTTCGTAGAAAAAGTATTGGAAAAATCTGCCGTTTCAACT TGTTTTTTTAGACACATAAGATATGTGTTAAATAATATTAAATGA Found at i:5340763 original size:5 final size:5 Alignment explanation
Indices: 5340753--5340767 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 5340743 ATATTAAATG 5340753 ATAAA ATAAA ATAAA 1 ATAAA ATAAA ATAAA 5340768 CACATTGCCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (5 bp): ATAAA Left flanking sequence: Indices 5340253 -- 5340752 TGCTTGAATTTTAATTTCCACATGAGACAGTAATTTTTTCCTAGTTTATCTGCTGATAGGAATAT TTTACTGGACGCAATTTTACCCAAAAGGACTTTCTGAAATAGTATCCTCTTTTCAACTTTAGTTA TGGTTTATTCCTGTTTTGTCACAAATATTTAAAAAAATATCTGAAATAAATTAAGTGACGTGGCA TTTCAACCTACTAAAGTACTACTAATACGTGATCATCAGGGCATAGTTCAAGTCAAAAGGCACTT GGTCTTCAGATGATTTTATGTTTTTCTGTCCTTCCTCCCGCCCCATCAACTTTAAAAGTGACGAA TAGAATGTGGTGGAAAGGTAGATATATTGTCGTGTTTTCGTAATGCCCATTTCAGCGCCATTTTA GAAAATTTTGTTGGTTTTCTCTTTGCTTTCGTAGAAAAAGTATTGGAAAAATCTGCCGTTTCAAC TTGTTTTTTTAGACACATAAGATATGTGTTAAATAATATTAAATG Right flanking sequence: Indices 5340768 -- 5341267 CACATTGCCAATTCAGAAAACCAATGTTTCTTTTTCTTAAATGTTTGATATTTCATATCTGAAAC AGTAAACTCTGTTAATTTTTCCAAATTTTAAATAACACATTTCCAGCCATGGATCAGCCTCATAT TAACGAAAAAGGAATGTCAATTCTAGTAACAGCTCTGTTCATAGTCGGTGAAACAGCTGGTGGTG GTCTCATTGCTCTTCCAACTGCAATTGTGAGCACCGGAGCGGTTACTGGAGCATTTCTTCTCCTT GTTGCAGCAGTAGTTTGCACATATACTGGAATTCTTCTGGCTGAAAATTGGACAATTCTGCAAGA GTTGTATCCAGAATATAGAGATCACTGCCGGAAACCGTATCCTGCAATGGGACTTCGAGCCATTG GGCCAAAATTTGCGTGAGTGAAAGAATGAAAATCTAGAAAAATGCTTTTATTGCTTAAGAAAGCA AGTTGAACTTTTTCAGAGCTGAAAAAAAGTAAAATTTGCTGCCAA Found at i:5341648 original size:6 final size:6 Alignment explanation
Indices: 5341637--5341649 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5341627 ATCACTCACA 5341637 ATCAGT ATCAGT A 1 ATCAGT ATCAGT A 5341650 AGATGTTGAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (6 bp): ATCAGT Left flanking sequence: Indices 5341137 -- 5341636 CAATGGGACTTCGAGCCATTGGGCCAAAATTTGCGTGAGTGAAAGAATGAAAATCTAGAAAAATG CTTTTATTGCTTAAGAAAGCAAGTTGAACTTTTTCAGAGCTGAAAAAAAGTAAAATTTGCTGCCA AAGATAACTGAACACTTGCTTTTCAAACACCATATTTTTAGAATATTCTTTGAAACAGATAATTT TTAGTTTTAGAAGCTTCTGAAACTTTGCCAAAATTCGTTTAGAAAAAAACAAAACGTTCTAAATT TGGATATATGCATTTTTCAGAGACAAGGTTATGTATAATTAGTTTTTTTTAGAAATTTTGAAAAT TTGGCTGTTTCAATAACCCATTATTATCTGTGTTATATTTTCAAATTGATGTTCATATTTTGATC AAACAGTCTCAAAATTTTCCAATTTTAAATTTCAAAAAAGTTTGGTGAAGTTGACTTGAAAATAA ATTACGGTTTCAATAAGTTATTATTTTTTTGCCATATCACTCACA Right flanking sequence: Indices 5341650 -- 5342149 AGATGTTGACCATATTTGTTTTTTTCCAGTCACTTTGTATCAGCAATGCTTCAAGTCACCCAATT CGGAACTGCCGTTGTATTTGTTCTTCTTGCCGCAAAAAATGGTGAAAACATGCTTCACGCAAATT TCGGAACTCACGTGAGCTTCTGCTATATGATACTCATCGTCGGGCTTCTCGTCTTCCCATTTACC CTTCCAAAATCTCCAAAAGATTTCTGGTATGCAGTGGTTGCTGCAATGATTTCAACTACAATTTC AGTAGTTTTAATCATTTTTGGAACAGTACAAGACTATGAAGTATGTCATAAAGAAGTATTCTATC CATCATTTAATTTCTCAAAAACTCTGATGTCATTTGGAACTATAATGTTCTCATATGGAGGACAT TGTGCATTTCCAACAATTCAACATGATATGAAGAAGCCTCATCACTTTTCTCGATCAATTATTAT TGCATTCATTATTATTTTTATTTTCTATCTTCCTGTTTCAATGAG Found at i:5342127 original size:6 final size:6 Alignment explanation
Indices: 5342112--5342128 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 5342102 TATTGCATTC * 5342112 ATTATT ATTTTT ATTTT 1 ATTTTT ATTTTT ATTTT 5342129 CTATCTTCCT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (6 bp): ATTTTT Left flanking sequence: Indices 5341612 -- 5342111 TTATTTTTTTGCCATATCACTCACAATCAGTATCAGTAAGATGTTGACCATATTTGTTTTTTTCC AGTCACTTTGTATCAGCAATGCTTCAAGTCACCCAATTCGGAACTGCCGTTGTATTTGTTCTTCT TGCCGCAAAAAATGGTGAAAACATGCTTCACGCAAATTTCGGAACTCACGTGAGCTTCTGCTATA TGATACTCATCGTCGGGCTTCTCGTCTTCCCATTTACCCTTCCAAAATCTCCAAAAGATTTCTGG TATGCAGTGGTTGCTGCAATGATTTCAACTACAATTTCAGTAGTTTTAATCATTTTTGGAACAGT ACAAGACTATGAAGTATGTCATAAAGAAGTATTCTATCCATCATTTAATTTCTCAAAAACTCTGA TGTCATTTGGAACTATAATGTTCTCATATGGAGGACATTGTGCATTTCCAACAATTCAACATGAT ATGAAGAAGCCTCATCACTTTTCTCGATCAATTATTATTGCATTC Right flanking sequence: Indices 5342129 -- 5342628 CTATCTTCCTGTTTCAATGAGTGGATATTTTGTATATGGAAGCTCTTTGACCGACTCTATTATTC CATCAATTCAGGTAAGCAATTTTCGTTTTCTAAAGTTTTTTGTCTTAAATTTTGACTAGAATTTT CAGAAAAATTGAAACGCGAAAGAATTACTTTCAATTGTGGGTAATCTCGAATATAAATACTCGGC GAAACTGAAGGAAATTTTTTGAAAAAATAATGTTTCAACGAATCAATGTATATATTTTTCTTCCA TTCGATGTAACAAATACGCTCGTAATGTCGGAAAAAAAAACCTTCCAGTCTTCGAGGCAACCTAC CTACTGCCAAAATAGGCTTGAATTTTTTTTGAACATTCTGGTTGAAAATTAGAAAATCCTAAATG CAACTTGAGACTAAATTTAAAAAAAGAGGTTTCTATATAAATGTTTATTTTGAAACAGTAAAAAA GTATAGATTAAAAAAAATACCATTATTCACTAATTCATTTGATTA Found at i:5344088 original size:6 final size:6 Alignment explanation
Indices: 5344077--5344090 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5344067 TCAAAACTTC 5344077 AAATTT AAATTT AA 1 AAATTT AAATTT AA 5344091 TGTTACTTCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (6 bp): AAATTT Left flanking sequence: Indices 5343577 -- 5344076 TTGCAATTTTCGGAGGAGTGGCTGCTACCACTTCAGCAATGCAAACGATGCTCCAGAGTGAATTC AGCGCTCCATGTTATGCAAGAATTTGGAGTGAGAATGCAAGAATTATGGAAGAACAACGACAATT GACTTTTACGTGAGTATGGACGGCCAATTGTTTTGATTAAAGTTTTTGTGAATAAGAAAATGTTT TGAAACAGCAGAAAAAAATTAGAAAACCAATTGTCTAATTTTGTGTTTTTTATTTCAGACTTTTT ATTTCAGCGCTTAAATTTACTAAATTATAATTAAATTCTAGATTTAAAAATTCTACTTACAATTA GTTTTAACTAATCATATCTTACCAATACCGGATTTTTCCATTTTCAGACACGGAAAAATCGCGTG CTGTGGAATGTTCCGTAACATTTCTGCAACGGGATCCGAAGTTTGTCTGGACGTTGCTTCAATGG CTAAAGCTGTGTCTCATGGATGAAATTAAGAAGCCTCAAAACTTC Right flanking sequence: Indices 5344091 -- 5344590 TGTTACTTCAGGTCGACCACAAGGTTAGGGTATTTCAAGTTTTTGACGGGTTCTTTTCTGATAGT TTTGTATAAATTTTAATTGAATGAATATGTTTTTAATACGTCTTTTATCTACAAAATGAAAATTG TCAATAAAATTTATGGTTTCGCTCTTGCAGAATTTCCTACTCTGTTTCATAATTCCGACAAAAAA ATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCG CCAAGCAGTCGACTGACGTCACGTTTCAGGTGTTGTAAACTTCACAAGACACACTAGTTTTAAAA TTGATAAAATAACGGAGAGAGATGCAGGTTTGCAAAATGGTTCAACAATGATCTCGCTTCCCTTG AAAGTTAATTAAACTTCCATGAATTTTCCCACAAAAATTTTCTGGAAATAACGTTCAATTTTACT CTATTATTTACACATTGAATTTCACGATTTGAATTACTGTCATAA Found at i:5346106 original size:6 final size:6 Alignment explanation
Indices: 5346095--5346107 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5346085 AAAGCGAGTT 5346095 TTAAAA TTAAAA T 1 TTAAAA TTAAAA T 5346108 AACCGTTCTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (6 bp): TTAAAA Left flanking sequence: Indices 5345595 -- 5346094 AATAATTTTCTTATATTTATTTTGAATGTAAAACAGCACAAAGTTTGATTATTTTATGTTTTTCC CTACTGTTGCATAACTGTTTCAACAAAACGACAACTCACCACATTTGGCCAATTTGGCAAAATAA TTTCCTGATTATCATTCATCATAATCTTCAAATTCTAACAATTAGTCAATAAATACTTCATTACA CTTTGTTTCATAATTTACCAAAGACTACGGAAAGCTCAAAAATACCTCAATTTTGATTCCCAAAA ACAGTACTTTTGTTTCGACTGTTTTGTTTATAATTTCTATATATATATTTATTTTGAATGTGAAA CAGTACAATTTTTGAATATCTGATATGTTTCAATGTTTCAACAAATCCATTTTAGCATTACGTTT CTTATCAGTTTTGCACATTTTGTCGTTCGATTTTAATTTTTTCTAAAACAATTTACACAACTGTT GAACTATTCGGTCAATTCAGTAATAATTGTAGGTGAAAGCGAGTT Right flanking sequence: Indices 5346108 -- 5346607 AACCGTTCTAGTGTCTTGATTCGAAAAAAATTCGAAAATACTTAATTACAATGGAGTCTTAATAG TGTTAAAAAACGGTAAGTACCTAATAGAAAACAAAAAAATAAACAAAGGAAAGAGCTATAAAAGT TTTGAAAATTTTCAATAAATAAAAGAGGTTTTGTTTCTCGTATTGGATTACTGTTTTGTTTATAA TTTTAATATATTTATTTTGAATGTGAAACAGTATCTAATTAATTTTTAGTCATTCAATCATTTCT ACCTATTACTCAATGTTTTATCCCACCAATAACTTACTACATTTGGCCAGTGTGGCAAATTAATT CTCTGATCATCATTAATCATAATCTTCAAATTCTTAGTCACTGGTGATGAAGCAAGTGCTGGTCC CAAAAGTTTCTTTATAAAATTTCGTTCCATTGATGCATCGAAAAAGAGTGTTTGCCATTTCCAAA GTGGATCAATTCCAGTTGTTGGCTCGTTTTGTGGTGTCAAAGACC Found at i:5354377 original size:6 final size:6 Alignment explanation
Indices: 5354366--5354379 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5354356 TTTTCTTCAG 5354366 CTTTTT CTTTTT CT 1 CTTTTT CTTTTT CT 5354380 CTCTTAATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79 Consensus pattern (6 bp): CTTTTT Left flanking sequence: Indices 5353866 -- 5354365 TTTAAACAAGGCTTTCTACAGTTTCCAATTTGTTTTTTTACTTGAAAAAGTATATTTATAACAAG AAACTCCGAAAGACATTCCACAGAAATCTTGAAATTGCGAATCGCGATATCTTTTCAGGAATATG TTCCCATGTCTTTAAAAGCAATATCATATCTATTGCGTACCCAGCAGGGTGCATTAAATTACCCC GAATCGGTTGTCAATTCAATGGCCATCATAAAATTTATGTGCCCTCTTCCCCTAGCAGTGGGTCT CGCAACGAACACCTGCCTCTCTCTCACACCCTCTGTGGTGTACTCCACCTGGACTATGTAAATAG TTTGGTGGGTTTCTTTGGTTATTATTAGTTTTTTTCTTTTTCAAATTAGCCCAAAACGTCTATTC TTGCAGACGTTTTCTTGAAAAATGCTTGAAAAAAGGTGTACGGTAGATTGGTGCAATCGCGCCCC ATCGCACATCGCGGGGATTTCAAATGGAAATCCCATTTTCTTCAG Right flanking sequence: Indices 5354380 -- 5354879 CTCTTAATTTCAGCTAATTTTCTCTTTTTTGATGTCTTTTCCTCATTTAAATATAATAAATCAAT GTCTTCCTCAATTTTATTCTTCAAATTTTCAGAAAAATGTCAGACACACCGTCAAAGAAGCAAAA ACGACGAGCAACGATATTTGTGACGGGTCCACAGAGCAAGAAGACTATTTTCGAAGGTGAAGAGA TAAAGGAAGAAGGAAATCAGACAACGTTACAAGATGTGAGTCTTTAAAATAAATCTGAAAATTAA AAACTGTACATACAATTTTAATTTTCAGCTGGCCATTGCACGTCAACGTCTTCACAATGAGCTTG CCGTCGTAAACACAACTTCTGGAATCGAAATTCTCATGCAAATCGTTATGGATGAACTGGAAGTG GTGGTATGCTTGATCTTAACATTCTTTCAAATGAATTATTGTTTCAGCGGCATCGTCTACGCGAA AATGGGCAACGAATGCGTAATTTCTTTGGTGATGGAGCCGTTCAA Found at i:5355134 original size:6 final size:6 Alignment explanation
Indices: 5355123--5355138 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 5355113 GCCGATGTTC 5355123 GATGAA GATGAA GATG 1 GATGAA GATGAA GATG 5355139 CTTTCTGTGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.44, C:0.00, G:0.38, T:0.19 Consensus pattern (6 bp): GATGAA Left flanking sequence: Indices 5354623 -- 5355122 ATAAATCTGAAAATTAAAAACTGTACATACAATTTTAATTTTCAGCTGGCCATTGCACGTCAACG TCTTCACAATGAGCTTGCCGTCGTAAACACAACTTCTGGAATCGAAATTCTCATGCAAATCGTTA TGGATGAACTGGAAGTGGTGGTATGCTTGATCTTAACATTCTTTCAAATGAATTATTGTTTCAGC GGCATCGTCTACGCGAAAATGGGCAACGAATGCGTAATTTCTTTGGTGATGGAGCCGTTCAAATT CGTGCAATTCTCATTCGTATTTTCTCGAAATCAATAAGTTCTCGAAACATGCTAGAATATAAAAA AGATGCGAAAGTGATTCTGAATGAGCTCTGCGACCAGAATATCACGTACAAAATGCCAAGATACA CACTGAACGACATGGAAGAAATATTGCTCACTGATGATTTAGAAGATGGAGTTATTCAACGTCGC TCAGAGAAATGGGAATGTCTTCCTGAAAGGCAGAAGCCGATGTTC Right flanking sequence: Indices 5355139 -- 5355638 CTTTCTGTGAATTCAGAAAAATGAATGTTCCAATGTCAATGACGTTTGATGATGATGATGAGGAT AGATTGAGTATGCCAAGTACTCGAACTGGAGTTACTGCATTGACAACTGAAGATCAAATGGCGGC AATTCAAAATCAATTGGCAATGCTTTCGAAGCAGCTAATGTGCCTTCAGAAGAGTGGAGTTGAGA CAAAAAGAGCATCATCCAGAGCGAGTTCTAGAAGAGGCGGAATAATTGCAAAAGTGAATAGTTTT ATTTAAAAAGTTGTGTCTTAGACCCAAAATGACCGAAAAAGGTTTTTTTTTTGGCGGTTTAAACA TTTAGGAAAAAGAGAGACTTTTCCAAGAATTTAAAAAAATGCCATAACTTTTTTTCGAGCAATTT TCAGAAAGTCTCGTTTCGACATTTAGTAGTTTTGGGTCTAATATAGCAAGGATTCAGATAAATCA CAAAAAAAGTTTAAAGGTTTTCCAATATATGCCTACTTTTTTTCA Found at i:5355193 original size:3 final size:3 Alignment explanation
Indices: 5355185--5355203 Score: 31 Period size: 3 Copynumber: 6.3 Consensus size: 3 5355175 CAATGACGTT * 5355185 TGA TGA TGA TGA TGA GGA T 1 TGA TGA TGA TGA TGA TGA T 5355204 AGATTGAGTA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32 Consensus pattern (3 bp): TGA Left flanking sequence: Indices 5354685 -- 5355184 ACGTCTTCACAATGAGCTTGCCGTCGTAAACACAACTTCTGGAATCGAAATTCTCATGCAAATCG TTATGGATGAACTGGAAGTGGTGGTATGCTTGATCTTAACATTCTTTCAAATGAATTATTGTTTC AGCGGCATCGTCTACGCGAAAATGGGCAACGAATGCGTAATTTCTTTGGTGATGGAGCCGTTCAA ATTCGTGCAATTCTCATTCGTATTTTCTCGAAATCAATAAGTTCTCGAAACATGCTAGAATATAA AAAAGATGCGAAAGTGATTCTGAATGAGCTCTGCGACCAGAATATCACGTACAAAATGCCAAGAT ACACACTGAACGACATGGAAGAAATATTGCTCACTGATGATTTAGAAGATGGAGTTATTCAACGT CGCTCAGAGAAATGGGAATGTCTTCCTGAAAGGCAGAAGCCGATGTTCGATGAAGATGAAGATGC TTTCTGTGAATTCAGAAAAATGAATGTTCCAATGTCAATGACGTT Right flanking sequence: Indices 5355204 -- 5355703 AGATTGAGTATGCCAAGTACTCGAACTGGAGTTACTGCATTGACAACTGAAGATCAAATGGCGGC AATTCAAAATCAATTGGCAATGCTTTCGAAGCAGCTAATGTGCCTTCAGAAGAGTGGAGTTGAGA CAAAAAGAGCATCATCCAGAGCGAGTTCTAGAAGAGGCGGAATAATTGCAAAAGTGAATAGTTTT ATTTAAAAAGTTGTGTCTTAGACCCAAAATGACCGAAAAAGGTTTTTTTTTTGGCGGTTTAAACA TTTAGGAAAAAGAGAGACTTTTCCAAGAATTTAAAAAAATGCCATAACTTTTTTTCGAGCAATTT TCAGAAAGTCTCGTTTCGACATTTAGTAGTTTTGGGTCTAATATAGCAAGGATTCAGATAAATCA CAAAAAAAGTTTAAAGGTTTTCCAATATATGCCTACTTTTTTTCATTTCAGAAAGCTTCTCTCGA AATCTCCTCCAACTCCTCGTCAGACGTATCTGAAGATGAAGGAAA Found at i:5355791 original size:3 final size:3 Alignment explanation
Indices: 5355783--5355805 Score: 32 Period size: 3 Copynumber: 7.7 Consensus size: 3 5355773 GTGCATGGCT * * 5355783 CCA CCA CCA CCA CCT CCG CCA CC 1 CCA CCA CCA CCA CCA CCA CCA CC 5355806 GCTGCCAAAG Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 17 1.00 ACGTcount: A:0.22, C:0.70, G:0.04, T:0.04 Consensus pattern (3 bp): CCA Left flanking sequence: Indices 5355283 -- 5355782 TGGCAATGCTTTCGAAGCAGCTAATGTGCCTTCAGAAGAGTGGAGTTGAGACAAAAAGAGCATCA TCCAGAGCGAGTTCTAGAAGAGGCGGAATAATTGCAAAAGTGAATAGTTTTATTTAAAAAGTTGT GTCTTAGACCCAAAATGACCGAAAAAGGTTTTTTTTTTGGCGGTTTAAACATTTAGGAAAAAGAG AGACTTTTCCAAGAATTTAAAAAAATGCCATAACTTTTTTTCGAGCAATTTTCAGAAAGTCTCGT TTCGACATTTAGTAGTTTTGGGTCTAATATAGCAAGGATTCAGATAAATCACAAAAAAAGTTTAA AGGTTTTCCAATATATGCCTACTTTTTTTCATTTCAGAAAGCTTCTCTCGAAATCTCCTCCAACT CCTCGTCAGACGTATCTGAAGATGAAGGAAAAGGTCCATCAGTCTGCTCACCATCTTCAAGCTCC AAAACCTCCACAGCGTCTGTCCAACTTGCTCCAATGTGCATGGCT Right flanking sequence: Indices 5355806 -- 5356305 GCTGCCAAAGATGTCTCAAAAGATCCCGCTCTCTGAGATCAAATCAGACAACAAACTTTCCACAG TAACACCATCAAAGCCTGCTGAAAAGAAATCATCTCCAAAATCTCTTCCGCCAGCAGAAACAATT GTGTCGAATCGGCCGTACTTGACGGATATTGCTCATGGAAGAAGCATGTTGAAGAAGACCGTTAG GTTAGGCTTGGAATAAGAATGAGTGGAAATTAGCTCCGACAGATCTAAAAAAATGTTGGCACAAC ATTGCGAAGTAGATCATTTTGTGGGATTGCTGCTCATCCCTGGGTTTTTCGAATAACTGAATAAA ATAATTAATTCCAGATCTCCCGGTGGATCGCCTGCTTGCCAAGTTCGTCACCAAAAGCGTCCAGT ATCATCTTTCGAAGCTGCTCTCCGTGATCGTTTTCGTGGCTTCCATGGTGATGCATCATTCTCGG AGCAAGAAGAGAACGGAGAGGATGATGATTTGAGTGCCACGTGGG Found at i:5357315 original size:3 final size:3 Alignment explanation
Indices: 5357307--5357322 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 5357297 ATGGTCGAGT * 5357307 TGA TGA TGA TGA AGA T 1 TGA TGA TGA TGA TGA T 5357323 CCAGATGAAG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31 Consensus pattern (3 bp): TGA Left flanking sequence: Indices 5356807 -- 5357306 TTTCTTTGGATTAATTAATGGGTTTTATTGCTTAAATAGACATAAAAACGACCCAAAATTTCGAA TAAAAGAGCCAGATTTTCCTCAAATCTGAAATTTCGTCATTTTATTGCATGTTTTGCTCGTTTAA ATAACCGAAACTACCAAAATATACAATAAAATGTGATAATTCAAACAAAAATGTATTTCAGCTTC TGCGAGATGCCAAGTCAACGAAAATTCAGATATTAGCAAAATTTGAATTTTTTTTGTTCATGAAA TTCGGGCCGTTTTTTGCCTATTTAAACAAAAAACCTTAAACTCTTTGATCTATTCACCTTATAAC AAGTGAGACAAGTCCACACTTCTGCCCCAATTTGGCACTCGGAGCAAGCTGTCCGAGCATTGATT TTGGCTGGCGGCAGTGGCTTAACTTCTTTCAAATGTGGACACGTGGCAAGTGGAACAACGGCGTG TGCTGGTCCCGAATCCATAATTTCAAGATTATGAGATGGTCGAGT Right flanking sequence: Indices 5357323 -- 5357822 CCAGATGAAGACGATTGATCAGCCATGTCTATTGAATCGTCGTCGTAGGCTTCGTCGTCGATATC GAGTCCGTAATTAGAAGGAGTTACCTAAAGTGGATAAATTTGGAGGAAAAATTGAGTTAAAGCCA ACAACAGATAATGAACAACGGGACAATTACCCTCAAATTATGGAAAATTATTTGATATGTGAATT GTCAAAGAATTTATTATCGTGGATGAGGGGTGCAAGTTATACATTCCACATTTTTATTTGTTAAA CAAATAATATCACTATAGTTTCATATTTTCAAGTTTCTCCATAACATCTTCCACTTCATCATTTG CAGATCGACGTCGACGAGTATTGTAACGACGAGAATCATCGGCTTGTTTCACTGGATCCGTTGCA GCTTTTCCTTTGACTTTCAGCGTTGCTGCCGACGATTTTCCATTTTTATTGATAAGCTTCGAATT GAGCACACTTCCGATGATAATCTTAGAGAAACCCCACATTTAGGA Found at i:5357849 original size:5 final size:5 Alignment explanation
Indices: 5357839--5357853 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 5357829 GACAATGAAA 5357839 AAATT AAATT AAATT 1 AAATT AAATT AAATT 5357854 GATCAGCTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (5 bp): AAATT Left flanking sequence: Indices 5357339 -- 5357838 GATCAGCCATGTCTATTGAATCGTCGTCGTAGGCTTCGTCGTCGATATCGAGTCCGTAATTAGAA GGAGTTACCTAAAGTGGATAAATTTGGAGGAAAAATTGAGTTAAAGCCAACAACAGATAATGAAC AACGGGACAATTACCCTCAAATTATGGAAAATTATTTGATATGTGAATTGTCAAAGAATTTATTA TCGTGGATGAGGGGTGCAAGTTATACATTCCACATTTTTATTTGTTAAACAAATAATATCACTAT AGTTTCATATTTTCAAGTTTCTCCATAACATCTTCCACTTCATCATTTGCAGATCGACGTCGACG AGTATTGTAACGACGAGAATCATCGGCTTGTTTCACTGGATCCGTTGCAGCTTTTCCTTTGACTT TCAGCGTTGCTGCCGACGATTTTCCATTTTTATTGATAAGCTTCGAATTGAGCACACTTCCGATG ATAATCTTAGAGAAACCCCACATTTAGGAGACACGGACAATGAAA Right flanking sequence: Indices 5357854 -- 5358353 GATCAGCTCACCTGAAAACCTTTCAGAATACTCCAATATTTCTGTTGAACTGCACAAACTTCTCG AATCGTTTTGATGCATGATGACTCGATTTTTTGAGGTTTCGTCGCAAATTGCTCTTTTTCCTCTC GTAACCGTCGGAGCATTGAACGATTTTGTAGAACTTCGCAGACAGCTTGAGCACTATTTGAAATG GAAGTAAGATTATATCCACCTTCTAGGACAGTTATAATACGTCCACCGGCAAGTGATGATAGTTG ATAAGTCATTAGGGCAAATGTTTCTGGAGTCACCTGGAAAATTAAATATGATTAAAAATTATTTT ATCAAAATGTTAAACTTTGCCTCGAAACTACGGTGTTCCGGTCTCGAAACGACAAACTTTTGTTA AATGCAAAAAGTGTATGCGCCTTTAAAGAGTACTGTAATTTTAAACCCCTCGTTGATTTCGAAAA CTAATGGGGTTGTTTTCTTGAGCTGTTAAAAACTTCGATGAGTTC Found at i:5359049 original size:4 final size:4 Alignment explanation
Indices: 5359040--5359063 Score: 27 Period size: 4 Copynumber: 6.0 Consensus size: 4 5359030 ATTGATTTTT * * * 5359040 ATAA ATAA ATGA AAAA AAAA ATAA 1 ATAA ATAA ATAA ATAA ATAA ATAA 5359064 TTCAGAAGTA Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 4 16 1.00 ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17 Consensus pattern (4 bp): ATAA Left flanking sequence: Indices 5358540 -- 5359039 TTTCAAAATTTTTTTCGTGAAGATCCCGGACTCAAAAATGTATTCGAGGCAAATTTATAATTTTT GAAATAATTTTTAAAAAATTAAATTCAGCAGTTTTTTCCTGATAATGCGAGTACCTTATACTCTC CCAATGGATCATCAACAGCTGCATCGAATCCAGCAGAAATGAGAACAAGATCCGGATTAAATTGG TATGCAATTGGCATAATAACTCGTTGAAATGCCATTTGATATTCATTATCTCCCATTTGAACTCC ACTAAATGGAACATTCACCGACATTCCCTCTCCAGCACCTTCTCCAACATCAGAATAATCTTTTG GTTCACCAATTGGATAAAAATTTCCTTTATCGTGACGATGAATTGACATATACATCACATTACTA TCCTCATAGAAGATCTCCTGAGTTCCGTTACCGTGATGAACATCCCAGTCGAGAATCAGAACACG TTTCGCTTTGTGCCGACGTTGAGCGTACTGGAAATATTGATTTTT Right flanking sequence: Indices 5359064 -- 5359563 TTCAGAAGTATACATACCTTTGCCGCAACCGCCACATTGTTGAAAATACAGAATCCACTAGATTT CGAAGCAGACGCATGGTGCCCGGGTGGGCGGACTATCACAAGAGCATTCCGTTGACCAGCGTCTT TTTCGAAGATTTCATCGACAGACTGAAAATTAAAAATTTTATAAAAATATTAAACCCAGAGTGTA CCTTTAGAGGCGGAGGAAAAAGTGGCAAAAAGTCAATAATTTCCGCTTTTTGAAGATCAATAAAA AAATTTCCATCGTTTTTTAAGTTTTACTGTGATATTTTGTCATTTTAGAACCGGAGGAATTATTT TTTAAATTTAAACAAAAACTTCGTTCTCCGAAATATTACAGGAACACAACATTCTGAGAATGCGT ATTTCGCCACACATTTGACGCGCAAAATATCTCGTAGCGAAAACTACAGTAATTCTTTAAATGAC TACAGTAGCGCTGCTCTCATTTTAAATTGTTTGTCACATTCTTAC Found at i:5360196 original size:2 final size:2 Alignment explanation
Indices: 5360189--5360209 Score: 42 Period size: 2 Copynumber: 10.5 Consensus size: 2 5360179 ACTAGTTAGT 5360189 TG TG TG TG TG TG TG TG TG TG T 1 TG TG TG TG TG TG TG TG TG TG T 5360210 TGGCGGCTCT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 19 1.00 ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52 Consensus pattern (2 bp): TG Left flanking sequence: Indices 5359689 -- 5360188 TTTTCGGCACGAGATATTTTGCGCGTAAAATATCTTGTGCAATACGTATTCTCAGAATTTTGTGT TCCTGTAATAACTGTGCTACGGAACGAAGTGTCTTCCCTACAGTAATCCATTTCCAATTTTATGA CCAATCATTTTCTGACACCCAGTTTACGAAACCATGCTCAATGTTCTCCCTTTCAAAATTATAAT GAGAGGATTACGGTAGGTGTCATTTATTATTTTAACCACCTCAGCCTAAAATGCAATTACGACAA AATCAGAGCATGTTGAACAAACAATGCCTAGACTGATCTCTTCCAACTTTGGACACCCATCATGC TCCTCAACCCTCAACAACCAAACAGTCTCTTTATTGTCGGTGTTTGCATAATAACTCATGTTTCT TCTCCCCCTATTTTCTCTCTGTCTGTACTTCTTCTATTTACATCTCTTTTCTTCTTTTCGGCAAA ATCATTGTAGCTAGAGAGATTCGTAGTTATTCTTCACTAGTTAGT Right flanking sequence: Indices 5360210 -- 5360709 TGGCGGCTCTTCACACATATACTCACACACATTTTCTTCAGTTTATCGCCATTCCCGATCGTTGA TTTGTGCATTTTTCGTTCGTTGCTCTAATTCATTTTCCAAAGAATTGAAGCAGATGTGTGTTCTG TCTGGGTTTCAAAAGCTCAAATGAATATTCATTTATGAACTCTTGTTTCGTTAGTCTTGCTTTCA GGTTGCTATGTGTGCACTTTTAGCAAGAGCTTGTCACCTTGGAGCAAAAAGAGCACAGCTCCGAA AAACCAAAAATCCAATTTTTGCCATTTTCAATGACTGATGGCTTCCACTTCCTTCCGTTTCTTTT CTCTCCTGAGATACTACAATTTCATTGTTTTTTCTTGAATATGAAGTAGTGTAGATGGGAATTTT ACCCAGAATAGTCATAAATTCTGTATTTAATACCTCACAAAGTAAATTTTTAAAAAATCTCCGAA GTCAATTTCCAATCAAGCTCCACCCACTTTGTCTGATTGGTCAAA Found at i:5361212 original size:6 final size:6 Alignment explanation
Indices: 5361201--5361219 Score: 38 Period size: 6 Copynumber: 3.2 Consensus size: 6 5361191 TTCATAGGAA 5361201 TAAAAT TAAAAT TAAAAT T 1 TAAAAT TAAAAT TAAAAT T 5361220 CGAATCACCT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 13 1.00 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (6 bp): TAAAAT Left flanking sequence: Indices 5360701 -- 5361200 TTGGTCAAAGATTGGGCGGGGCGAATCTCTGATTGGTCGTGCAGTTCTTGTTTCAGATATTTTGG GCATTCAAACAGACAGATAATGTTAGTTTTTTGTGGTATTTCAGAATTTCAAACTTATTTACCTT TAAACCGTGACCCCTCAAATTCACGTGGAATCTTCCAAAATCCAAGTGTTTTTATTGTTCAATTA TTTCCTTGTTTATTTCCTGTGTAGAATCTTTGATAAAAACCTCTCTGGTTCGTTGGTCAACTCCT CTTCTCAGCTAAGGTTTTCAATTTCCAGATAACGAAATAAAATGTCGGAGGAAACCTCATCATTA TCACTACGTATCGAATATAGGGTTCCAAATTTAATGAATATATTTTTACTCCATAATATCATCCC GCTAATCGTCTACTCGTTGCTTTTCCGAATGGCACGACAATATGTGAAGGCTAACTTTTGGTTGA AATTTGAGGGATTCAAGTGAGTTTTTACTTTTTATTTCATAGGAA Right flanking sequence: Indices 5361220 -- 5361719 CGAATCACCTCAAAATTCAGGCGATACCGTTTGCAAAACCTCACAGTCTGCTGGCTGCACGCTGT CATTGTTGGAGGTGGTGATCTGATTCTGATGTTCAGTCATCCTCATGAGATCTTTCATGACGTCA TCGACTGGTACAATCCCATTGCCGCTCAGCTCCCATTGATCTCGGTCGCCTATTTCTTTCAAGAC GCCTTTGACATGCTGATGTATGAATGGAATAGCTATACATTGGAGCTGCTGCTTCATCATTTTGC AACGTGTGCCGCATTGGTGGCTCCCGGGCTGACTGGAAAGTTCACACTGGCAGCCGGATGGGCTT TGTTGATGGAGGTCAACAGGTGAGAACTTTGATTCCCATTTGATCGTGGAAAACACGCTCCGCCC CAGAGATATGGGTCTCGTTAGGTATTTCGCGATAATATTGTAAATTCGCTGGGCGCGTTTCTACA CCAATTTCAGAATAATATACAGTACCCCCTGACCAATTTTCTAAT Found at