TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:5985419 original size:5 final size:5 Alignment explanation
Indices: 5985405--5985424 Score: 33 Period size: 5 Copynumber: 4.0 Consensus size: 5 5985395 TTGCTTATTC * 5985405 TTTGT GTTGT TTTGT TTTGT 1 TTTGT TTTGT TTTGT TTTGT 5985425 CGGGACCCTC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 5 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.25, T:0.75 Consensus pattern (5 bp): TTTGT Left flanking sequence: Indices 5984905 -- 5985404 GCCATCGTGAAGATGATGGAACAATTGTCACGACGACAGTAACCACTAGTCACATCAGCGGTAAG GAAAAGTTTTGGGATAGTTTGGGTAACCTGGGGATCCTAGAGGAACTATGACTCTAACAACTTCT TCCTCAAAGCACGTCAAGCACCTATCATTCTAACCATTTCAGAATCTCCATCGGGATCACCTACA AGACGATCAGTGGAGCCCGAAGAGCATCGTCATAGTCAACATGAAGATCACGAAGGTAGTACCTA AGAAGAGATGTTCAACAATATTATATTATATCCTCTGGTCTTTATTTAATGTTATTCTTGCTGCT TCTTTGCACTCAAACTCTGCCAAATCACACTCAATCACTACCAAAACAGAAACGAAAAAAAGCCA CAAAACCTCTCTGCCTATCCTTTTCCCTTTTTTTCACTGTTTAGAAATAAAATGAAGGTCAACAA AACATTATATTTGTGAATGATTTAATGGTTCATGCTTGCTTATTC Right flanking sequence: Indices 5985425 -- 5985924 CGGGACCCTCTGGGACACAGAGAGAGCACAAAAACATCGAGGTCAGCTGCCTTGAAGGATTCGGA GACGCAGGACCACAAAGCTCCCGGAGCCGCCCATCGCCTTGAAGCTCTTCATACTTTTTCTTCCT CGTCAGTTTTCGCAAAATGTCCTCAACTGCAAATTATATCGTCTCTGGTGTTCTTTCCGACGGAA CTCCAATCGTATTCGGTGCAGTTCCATCTGATGGAACCTCTCACACAGCTATTCATCATGTGAAC TCGGCCAGTCATTTTCAAGTGGAATCTTGGGATGGTGAACATGCTGAACATCCACAAGAAAGTGA AGAGCCAAGAAGATTCTCAATCTTTTTGGAAGCAGGAGGAGCTGAAAAAGATGGATCATCTCCAT TTGATAATCAAGAAGAAGATGAACCAATTGCCAGCTGTAAACAATTCGAACGCACCCGTTCCGCA TCCCTTGCCGCCGCTCTGCTTGAGCTCGACCCGCGTGGAGTTCCA Found at i:5986245 original size:3 final size:3 Alignment explanation
Indices: 5986237--5986249 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 5986227 GTCCAAACAC 5986237 ACT ACT ACT ACT A 1 ACT ACT ACT ACT A 5986250 AAACCGTCTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31 Consensus pattern (3 bp): ACT Left flanking sequence: Indices 5985737 -- 5986236 CACAAGAAAGTGAAGAGCCAAGAAGATTCTCAATCTTTTTGGAAGCAGGAGGAGCTGAAAAAGAT GGATCATCTCCATTTGATAATCAAGAAGAAGATGAACCAATTGCCAGCTGTAAACAATTCGAACG CACCCGTTCCGCATCCCTTGCCGCCGCTCTGCTTGAGCTCGACCCGCGTGGAGTTCCACTTGTTC AATTCTTCAAACTTGCGACCGACGAGCCGCTATTTGAGGTTGATGAGGGAGAGGACGAAGTTGAG CCGACAGAGGCGGAGCTTGTGCTCAGCCAGCTGCTTTTCACCCTCAGATCGTTGAAGATGTCTGA AGCTGACGGAAAACATTCTGAAGCTGTTCAGCGTCTTCGCGAACTCGAAGAAGAGCTCCGTGCGG CTGGTGCAGTAACTCCTTCTGATCCAGCAGTCACTGAAGCCGTCGCAAGAGCGTTGGCTGTTGCG GGAGCAGGAAGAGATGTACAGATTCGTGTTAATCAGTCCAAACAC Right flanking sequence: Indices 5986250 -- 5986749 AAACCGTCTACGAAACTGAAACTTCTGCAATGGCTCACATGGATGTAGATCAAATTCGCAAGCTT CAGCAAGATATTATTGCCGATATTTGTACGTGTAATTTGTGATTTTTTTTTCGACAAATTCCCTT CTCACAATACTGCATGTTGCCCCAATGCATATTTACCAATTCACTGAAACAGCAAGATTATTAAC TAATTTTTGACACAAAAAATATTATAAAACGAAGCCACTAAAACTGATTTTTTTTCAGCATCTGG CGCTGAGCAGCACTCTGGCCAAGACTCTGGCACGACACAAAAGAAGGAAACTGCAGAGGAAGGAT TCACCAACGAAGATGGATCAGTTGTGGTTTCGAAGAAAATGACAAGAGTTGTCACTACCACTCGT ACCACTTTGCCAGGTAATTATTTGAAGTTTTTAGTTTTCAAATTTGAATATTAAAATTTTTATTT GATAGTTAGTGTTCTAGAAATTTAAGAATTAATCCTGAATATTGA Found at i:5987223 original size:6 final size:6 Alignment explanation
Indices: 5987212--5987225 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5987202 TCAATTTTTC 5987212 AGGAGA AGGAGA AG 1 AGGAGA AGGAGA AG 5987226 AGCCATCTGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00 Consensus pattern (6 bp): AGGAGA Left flanking sequence: Indices 5986712 -- 5987211 AGTGTTCTAGAAATTTAAGAATTAATCCTGAATATTGAGTAATCACATGGGACACTCTTACATGT TTTTTTCAAATTCTGAAAGGTCACCCATGACTTGGTACAATCTGAAAATTTGAACTTTCTCACCT GAAAACACCAATATTCTTCAATCAATAAATATTTATTTGCTCATATCTCCAATGCTCTTTTTTCC GCTCCGAGCAAGATGGAACGTGAGAAATCTATTTTGACAGCAGAGCAAAATTCTTCCCCGGCTTC TCGGTGATTTCAAAACGAATTGAGCAAGCAACGGCATGGGGAGCGAGAGAGCACGGGAGCCCATG AGACACAGCAACTTTACACAAGTTTTGTGTGAGCCAAGGGCTCCCGTGCTTTCGAAAGACATTGA CGGCATAGAGTAACCGGGGATGGGATAGTGTGTGAACTTTAGGTGAACACAAATTGGAATTGAAA CATGAGATATTAAAAATCAAATTCTTATCAATTTTTCAATTTTTC Right flanking sequence: Indices 5987226 -- 5987725 AGCCATCTGCACCTGGTGAGTAAGCAGCTGAACAATCGGATTCCCTTCTTGGACCTTGGATACCC TACCGTACCCATCCCCACTTATTATTTTGTTTTATTGAATTTGAAAACAAATTTTCTCTGCTTCT CTCTCTCATTCTCTTCACTACACACTCTCTCGCTCGTCTTAGAAATTAAGCCAAAAAAAAAAACT CCAATTCGTATATGTCGGTTAATAAATAAAGAGAATTCATATTTGTCCAGAAAAAGAAGAAATTA TGATGGGTGAATGAGTATACATCATATTTTGAGTCGAATGATTGCATGAATTGATATTGTTTTGT TTATTTGGTTAATTATAAATAGGCCTACAAAGGAATCGGAACGCCCAATGGCAGGAGCAATTGGA ACCGGAAAACTTTACAGCTTAAAAACAGAAGTATGGAAATAAAATATATTTCGTTTGGTGGTGGT GATGGTGGTTCTGTAAATTTCAGAAAATTTCGATCAGGGACATTT Found at i:5987679 original size:3 final size:3 Alignment explanation
Indices: 5987671--5987689 Score: 31 Period size: 3 Copynumber: 6.3 Consensus size: 3 5987661 ATATTTCGTT * 5987671 TGG TGG TGG TGA TGG TGG T 1 TGG TGG TGG TGG TGG TGG T 5987690 TCTGTAAATT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.05, C:0.00, G:0.58, T:0.37 Consensus pattern (3 bp): TGG Left flanking sequence: Indices 5987171 -- 5987670 AGATATTAAAAATCAAATTCTTATCAATTTTTCAATTTTTCAGGAGAAGGAGAAGAGCCATCTGC ACCTGGTGAGTAAGCAGCTGAACAATCGGATTCCCTTCTTGGACCTTGGATACCCTACCGTACCC ATCCCCACTTATTATTTTGTTTTATTGAATTTGAAAACAAATTTTCTCTGCTTCTCTCTCTCATT CTCTTCACTACACACTCTCTCGCTCGTCTTAGAAATTAAGCCAAAAAAAAAAACTCCAATTCGTA TATGTCGGTTAATAAATAAAGAGAATTCATATTTGTCCAGAAAAAGAAGAAATTATGATGGGTGA ATGAGTATACATCATATTTTGAGTCGAATGATTGCATGAATTGATATTGTTTTGTTTATTTGGTT AATTATAAATAGGCCTACAAAGGAATCGGAACGCCCAATGGCAGGAGCAATTGGAACCGGAAAAC TTTACAGCTTAAAAACAGAAGTATGGAAATAAAATATATTTCGTT Right flanking sequence: Indices 5987690 -- 5988189 TCTGTAAATTTCAGAAAATTTCGATCAGGGACATTTCCAGATTTTTTTCAATTGGCAAAGAGTTT GGAGCATTTTTGGAGCGACTCGGCAGATTCAGCTTGTAAAAATCGGAATTTGAGAATATTCTCGC CTTCTTCTAATATTTCTGTTGTACTCTTGCTTTAGTTACGTTTGAAACAGTATTTAATTTCTTCA GTTATTGCTTGGTAATTTCTCGTAAACATAGTGGTGTTTTCCTCTTTGCGTAAACCACCAGTTTT GCAAAACCTACGAATCTTCAGTTAAAAATTTTTAGTTTCTACATTTATTTTGCCTAAAAATAAAA CAAATTTCTTTTTATTTCCTTCATTTTACAAATTATCTTTTAAAAATTTTTTGCTGTTTCAACTA CCATTCATATTCAATTTGTTTCTCCATTTCTGATCATGATTCGCCTCCAAGTTTTACAAACTCAT ATACTCTCCCCATTTTCCATACGGTAGACTCAAGGTTCAAGGAAG Found at i:5989303 original size:3 final size:3 Alignment explanation
Indices: 5989297--5989310 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 5989287 GGAAGAAGAC 5989297 GAT GAT GAT GAT GA 1 GAT GAT GAT GAT GA 5989311 AAAGTCAGAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 5988797 -- 5989296 AGCACGTCGCACATGCAGAGTTGAAGGATACACGTGAATACAGCGATGAAGAGCTTGCTCAAGAG CTTTCTCCTTCGGAAGAACATGTGTCAACCGCCGAGATTAAGGATATTAAGTCATACTCTCCAAC ATCTTCTGATGACGAAAGATCTTCTCAGAAAGGAAAAGTGAGTCCACCGATTCCCCAAGTACGCC ATGCTATCTCGCCATCAGTTGCGAGTGAGGTTTTGAGTTCTCATGACGACGAGTTGGCCGCCCAT TTTGTGGCTGAGTCATTTGAAAAACATGATGAAGGAAATGTTGAAACAATAGAACAAACTCCAGT TTACAAAGGGCATCACTCGCCCGGGCAGACTTCTCCAATTGTTTCAGAGCATCCACATGCTCAGG AATATGCGGAGAGTGTGACGAGCCACGATGAAGGAGACAATTTGAGTTTGAAGAGCGGGCATGAA CCGGAAATCGCTAGGCATTCTGTTGCAAGTGTCCAGGAAGAAGAC Right flanking sequence: Indices 5989311 -- 5989810 AAAGTCAGAACTTGGAGACTTTGCAAAGAAAGCTGGAATGATTGTTGGTGGAGTTATTGCAGCTC CAGTTGCACTTGCTGCTGTGGGTGCAAAGGCTGCTTATGATGCTCTGAATAGAGATGATGATGAG GAGAAACTAGAAGGACACGAAGAAAAGGAAGTTCTGACAACTCAGACTACTATCATGGAATCGCC AATAAGACACGAAGATATTCCATCTCCACATTTAGAAGATGTCACTCCGAAAGTTTCCCATCAGG AACATCCCTATGAACATGTCACCGAGACGACAACTACCGTAACCCGTGACTACTACGAACAACCG GAAGATCACAGAGAAGCATCACCTGCTCCATCGTCACATGTGGAGTCTGAACGTCCAATTTCCGA ATCTCCAGCTGTGTCTGAAAGGGAACCATCACACATTGCAACTGAAACTACAACCACAGTTACTC GGGAATATGACCAAGAACCAAAAGCAGATCAATCTTCAGCAAGAG i:5989950 original size:3 final size:3 Alignment explanation
Indices: 5989942--5989955 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 5989932 TTTGGTTGAA 5989942 ACC ACC ACC ACC AC 1 ACC ACC ACC ACC AC 5989956 TGCAGTAACT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00 Consensus pattern (3 bp): ACC Left flanking sequence: Indices 5989442 -- 5989941 AGAAACTAGAAGGACACGAAGAAAAGGAAGTTCTGACAACTCAGACTACTATCATGGAATCGCCA ATAAGACACGAAGATATTCCATCTCCACATTTAGAAGATGTCACTCCGAAAGTTTCCCATCAGGA ACATCCCTATGAACATGTCACCGAGACGACAACTACCGTAACCCGTGACTACTACGAACAACCGG AAGATCACAGAGAAGCATCACCTGCTCCATCGTCACATGTGGAGTCTGAACGTCCAATTTCCGAA TCTCCAGCTGTGTCTGAAAGGGAACCATCACACATTGCAACTGAAACTACAACCACAGTTACTCG GGAATATGACCAAGAACCAAAAGCAGATCAATCTTCAGCAAGAGAATCAGTAAGAGATCTTGTAT CAGAAGAACATGAACATCCAGCATGTGATTCTGAACGACTCTCGGAACCAGCTCAATCTCCCGAA CCAGTTGAGACACATGCAGAGAGTCAATTCTCCAATTTGGTTGAA Right flanking sequence: Indices 5989956 -- 5990455 TGCAGTAACTCGTGAATTTTATGATGAGGACCAAGAAGAACAAGCTTCTTCACGAGCCACCAAGG AAAGGATTGAGCAGTCCCCTGTAGCATCAGAGAGATCTATTGTTTCGACAGAGCATCGTCAATCT CCAACACAAGAATCTGAACAATCACTTGAGCCCACTTCCGAGAAAAATGTTCATACTGTAACTGA AACCACTACAGTAACTCGTGAATGCTTTGAAGAACCAATTGCCTCCGAGCTAGAACACGCGTCTC GCGAGTTTGAACAAGGATCAAACGACTTTAGAAGATCCGTGTCGCCAGTTGATGCTCAAGAACAA GTAGACGTTCCACACTCTCCAGCTCCATCATCTCATGCCGAATCAGAGCAACCAGTTCCAGAATC TCCACATCATATCGTAGAGACTACAACTACAACAACGGTTACTCGTGAATTTCAAGATGAAGAAT ACCCAAGACCGGAATCACCTGCTGAAATTTTCCCGATCCCATCAA Found at i:5990376 original size:6 final size:6 Alignment explanation
Indices: 5990365--5990378 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5990355 TATCGTAGAG 5990365 ACTACA ACTACA AC 1 ACTACA ACTACA AC 5990379 AACGGTTACT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14 Consensus pattern (6 bp): ACTACA Left flanking sequence: Indices 5989865 -- 5990364 AACGACTCTCGGAACCAGCTCAATCTCCCGAACCAGTTGAGACACATGCAGAGAGTCAATTCTCC AATTTGGTTGAAACCACCACCACCACTGCAGTAACTCGTGAATTTTATGATGAGGACCAAGAAGA ACAAGCTTCTTCACGAGCCACCAAGGAAAGGATTGAGCAGTCCCCTGTAGCATCAGAGAGATCTA TTGTTTCGACAGAGCATCGTCAATCTCCAACACAAGAATCTGAACAATCACTTGAGCCCACTTCC GAGAAAAATGTTCATACTGTAACTGAAACCACTACAGTAACTCGTGAATGCTTTGAAGAACCAAT TGCCTCCGAGCTAGAACACGCGTCTCGCGAGTTTGAACAAGGATCAAACGACTTTAGAAGATCCG TGTCGCCAGTTGATGCTCAAGAACAAGTAGACGTTCCACACTCTCCAGCTCCATCATCTCATGCC GAATCAGAGCAACCAGTTCCAGAATCTCCACATCATATCGTAGAG Right flanking sequence: Indices 5990379 -- 5990878 AACGGTTACTCGTGAATTTCAAGATGAAGAATACCCAAGACCGGAATCACCTGCTGAAATTTTCC CGATCCCATCAAGCGAGCAACAAAGTGAAGAACCACACATTGTCAAGGAAACAACCACTACAACA ACGGTCACTCGCGAACTTTACGATGAGCCGGAAAAAGGAAATGTCACATTCTCCCCAGCACCATC TTCGCACGCAGAATCAGAACGACAAGTTCCAGAATCACCAGTTGTTTCTCATCAAGAATACCCAC ATGTTGTTGAAACGACAACGACCACAAATGTAACAAGTAACATCTATGACGATGAAGACAACGTT CCATCTTCTGAAGATCCAGCTACACAACACTTCCAACAATCTGAAACTTCAGTGCATCGCTCACA TCCAGACTCTGTAGAAGAAAGTGACGGTGAAGGCCTTGGAAGTAAGGTTCTTGGATTTGCAAAGA AAGCAGGAATGGTTGCTGGAGGAGTTGTTGCTGCTCCAGTTGCAC Found at i:5990938 original size:3 final size:3 Alignment explanation
Indices: 5990923--5990939 Score: 27 Period size: 3 Copynumber: 5.7 Consensus size: 3 5990913 TTTTGAGAAG * 5990923 GAT GAT GAA GAT GAT GA 1 GAT GAT GAT GAT GAT GA 5990940 GACATCTCAT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 5990423 -- 5990922 AATCACCTGCTGAAATTTTCCCGATCCCATCAAGCGAGCAACAAAGTGAAGAACCACACATTGTC AAGGAAACAACCACTACAACAACGGTCACTCGCGAACTTTACGATGAGCCGGAAAAAGGAAATGT CACATTCTCCCCAGCACCATCTTCGCACGCAGAATCAGAACGACAAGTTCCAGAATCACCAGTTG TTTCTCATCAAGAATACCCACATGTTGTTGAAACGACAACGACCACAAATGTAACAAGTAACATC TATGACGATGAAGACAACGTTCCATCTTCTGAAGATCCAGCTACACAACACTTCCAACAATCTGA AACTTCAGTGCATCGCTCACATCCAGACTCTGTAGAAGAAAGTGACGGTGAAGGCCTTGGAAGTA AGGTTCTTGGATTTGCAAAGAAAGCAGGAATGGTTGCTGGAGGAGTTGTTGCTGCTCCAGTTGCA CTTGCTGCTGTTGGAGCTAAAGCCGCTTACGATGCTTTTGAGAAG Right flanking sequence: Indices 5990940 -- 5991439 GACATCTCATTCTCCCGAATCTCCTGTTCCGGAATATCAGAGTGAACAATACCAAGATGATTCAG CTCAATCTTCTCATACCGATTTCGAACATCACATGCCCGAATCTCCTATTGAGCACGAAAAGGAA ACGGAAGAATTCGATCACAGCCATCCAGAATCTCCAGTTCTATCGGAAAAAGAGCGAGAGCATCA AGTTACTTCGGAAACCACAACTACTACCACAGTAACTCGGGAATACAATGATGAACCGGAAGATG AGCAAGAACATCAAGGACCACATTCACCTGCACCATCGTCTCACACTGAAGCAGAACATCCACAT ATTGTCGAAACAACTACAACTACTACTGTTACACGTGAATTCCAAGAGGAGCCAGAAGAGTTGGA ATACAAACAGGAAGACAATTCTAGAAAATCACCATCTTCCCACTCTCAAGAGAATCTTGTCACCG AGACAACAACCACCACCACTGTCACAAGTGAGTACTATGATGAAC Found at i:5991283 original size:6 final size:6 Alignment explanation
Indices: 5991274--5991291 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 5991264 TATTGTCGAA * 5991274 ACAACT ACAACT ACTACT 1 ACAACT ACAACT ACAACT 5991292 GTTACACGTG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22 Consensus pattern (6 bp): ACAACT Left flanking sequence: Indices 5990774 -- 5991273 ACTCTGTAGAAGAAAGTGACGGTGAAGGCCTTGGAAGTAAGGTTCTTGGATTTGCAAAGAAAGCA GGAATGGTTGCTGGAGGAGTTGTTGCTGCTCCAGTTGCACTTGCTGCTGTTGGAGCTAAAGCCGC TTACGATGCTTTTGAGAAGGATGATGAAGATGATGAGACATCTCATTCTCCCGAATCTCCTGTTC CGGAATATCAGAGTGAACAATACCAAGATGATTCAGCTCAATCTTCTCATACCGATTTCGAACAT CACATGCCCGAATCTCCTATTGAGCACGAAAAGGAAACGGAAGAATTCGATCACAGCCATCCAGA ATCTCCAGTTCTATCGGAAAAAGAGCGAGAGCATCAAGTTACTTCGGAAACCACAACTACTACCA CAGTAACTCGGGAATACAATGATGAACCGGAAGATGAGCAAGAACATCAAGGACCACATTCACCT GCACCATCGTCTCACACTGAAGCAGAACATCCACATATTGTCGAA Right flanking sequence: Indices 5991292 -- 5991791 GTTACACGTGAATTCCAAGAGGAGCCAGAAGAGTTGGAATACAAACAGGAAGACAATTCTAGAAA ATCACCATCTTCCCACTCTCAAGAGAATCTTGTCACCGAGACAACAACCACCACCACTGTCACAA GTGAGTACTATGATGAACCAGAACATTTTGAAGAACAAGAAACTGGCAAATCGTCGCCAGCTCCA TCATCCCATGTTGAATCGGAACGTCAGGTTCTTGAGTCTCCAGTTGCATCGGATCCGCGTCATGT TATGGAAACTACCACCACAACAACAGTAACACGACAATTCCATGATGATGAAAGCGAGCGATCCG ATTCTCCGAATCGAGATGTGGTAGAAGCTCAATCGATTCATTCATCGAATATTGAATCACATCAA CAATTCTCCGAGAAAGACGATGATTCGCAGCGAGGCCCATCTCCTGTAAAGTCCGAAGATGAACC TGTAAAACATGAATCATACAAATTCGAAACATCAACCACGGAGAC Found at i:5991969 original size:6 final size:6 Alignment explanation
Indices: 5991955--5991972 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 5991945 TGTTATTGAG * 5991955 ACCAAA ACCACA ACCACA 1 ACCACA ACCACA ACCACA 5991973 GTAACACGTG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00 Consensus pattern (6 bp): ACCACA Left flanking sequence: Indices 5991455 -- 5991954 AACAAGAAACTGGCAAATCGTCGCCAGCTCCATCATCCCATGTTGAATCGGAACGTCAGGTTCTT GAGTCTCCAGTTGCATCGGATCCGCGTCATGTTATGGAAACTACCACCACAACAACAGTAACACG ACAATTCCATGATGATGAAAGCGAGCGATCCGATTCTCCGAATCGAGATGTGGTAGAAGCTCAAT CGATTCATTCATCGAATATTGAATCACATCAACAATTCTCCGAGAAAGACGATGATTCGCAGCGA GGCCCATCTCCTGTAAAGTCCGAAGATGAACCTGTAAAACATGAATCATACAAATTCGAAACATC AACCACGGAGACCAGAGAGTTTGATCGACCAGAACTTGATTCAGAAAGACTCTCAGAACCAGCTC AATCTCCAATGGAAGTGTCTCCCATCACCACAGAGGAGAATATTGTGCGGCCTTCATCTTCTGTG AAATCAGAATACGGTTCTGAAGGACATGTTCCAAGTGTTATTGAG Right flanking sequence: Indices 5991973 -- 5992472 GTAACACGTGAATTCTATGACGATGATCAAGATGAACATGAAAATCAGACACAATCTGAAGAACT TCGTTCATCAATTCCTACCGAGGAAGAAGAACATGAAGGTTCTCATCTTTTCAAAGAGACAACTA CCACCACCACAGTAACTCGTGAATTCTATGATGAACCAGAAAATGTTGAAGAACTCCAGGATCCG CAATTCTCACCTGCTCCATCTTCTCATGTCGAGTCTGGAATTCATGCCTCGGAATCACCAGTTGC TCAACAACAAGAAATTCCACAAACTCGCGAATTCCATGAAGATTCGCCAGCAGCCCAATACTTCC ACGAAGAAGAATATGAATCTCATGTTCTAACTGAGCAGGCTCCACTTCTCACCGAGCAACAGCAT CAACCAGAATCTGGAGATGAGAGTGATGGAGAAGGCCTTGGAAGTAAGGTTCTTGGATTTGCAAA GAAAGCAGGAATGGTTGCCGGAGGAGTTGTCGCTGCTCCAGTTGC Found at i:5992812 original size:6 final size:6 Alignment explanation
Indices: 5992801--5992814 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5992791 CGTTGTCGAG 5992801 ACTACA ACTACA AC 1 ACTACA ACTACA AC 5992815 CACTGTTACT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14 Consensus pattern (6 bp): ACTACA Left flanking sequence: Indices 5992301 -- 5992800 AAGAAGAATATGAATCTCATGTTCTAACTGAGCAGGCTCCACTTCTCACCGAGCAACAGCATCAA CCAGAATCTGGAGATGAGAGTGATGGAGAAGGCCTTGGAAGTAAGGTTCTTGGATTTGCAAAGAA AGCAGGAATGGTTGCCGGAGGAGTTGTCGCTGCTCCAGTTGCACTTGCTGCTGTTGGAGCTAAGG CTGCTTACGATGCACTCAAGAAGGATGACGATGAAGAAGATCAAGAGGAACGTGAATCCTTACTT CGCCAAGAACGATCTATTGATTCCCCACATGCATCAGAACAGTCTCAAATTGAGGAAGAACATGA AAGATTCGAGGAATCCCCAGTGCCGTCTGAGAAGCATCATGTGACTGAGACAACCACCACCACAA CAGTTACACGGGAATATTTCGATGAACATGAACCTCTAGTTTCTCAGGAAATAGAAGGAGAAAAG GGTTCACCAGCTGATAGTGAAAAATCGTTGCCACACGTTGTCGAG Right flanking sequence: Indices 5992815 -- 5993314 CACTGTTACTCGTGAGTTTGATAAAAATGATTCGGAATCTCCAGTGCCTTCGGAAAAAGAGCAAG AACCTACAACGGTTTCAAGAGAAGTGTATGAAACAGCAGAAGGTGATGAACCAGAGCACCATTAC ACAGAAACTACAACAACGACCGTTACAAAAGAAGTGATTGACGATTCACAAGAAATGGGGGATGA CGATGAGCCAAAGCAAGAGAGCCCACAGGTAGTTGAAACTACAACAACTACAATGACAAGTCGTG AATATGATGATAATGATGATGAGACAAGATCCGAAGCAGGGGACTCCCATATCACCGAGACAACG AAGACAACGACAGTTGTACGCGAGTTCCACGGAGAGCAACCGGAAGAGACAGAGGAAACAGATGA AGTTGAGGAGTTGCCACCAAAAATTGAAGAAGAAGATAATGTATCTGAATACAGTGAGAGCTCTA CTTCCGTGAGCCGAGAAGTTCGACCAGATGAGCCACACATCATTG Found at i:5993093 original size:3 final size:3 Alignment explanation
Indices: 5993078--5993096 Score: 31 Period size: 3 Copynumber: 6.3 Consensus size: 3 5993068 AGTCGTGAAT * 5993078 ATG ATG ATA ATG ATG ATG A 1 ATG ATG ATG ATG ATG ATG A 5993097 GACAAGATCC Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32 Consensus pattern (3 bp): ATG Left flanking sequence: Indices 5992578 -- 5993077 TGATTCCCCACATGCATCAGAACAGTCTCAAATTGAGGAAGAACATGAAAGATTCGAGGAATCCC CAGTGCCGTCTGAGAAGCATCATGTGACTGAGACAACCACCACCACAACAGTTACACGGGAATAT TTCGATGAACATGAACCTCTAGTTTCTCAGGAAATAGAAGGAGAAAAGGGTTCACCAGCTGATAG TGAAAAATCGTTGCCACACGTTGTCGAGACTACAACTACAACCACTGTTACTCGTGAGTTTGATA AAAATGATTCGGAATCTCCAGTGCCTTCGGAAAAAGAGCAAGAACCTACAACGGTTTCAAGAGAA GTGTATGAAACAGCAGAAGGTGATGAACCAGAGCACCATTACACAGAAACTACAACAACGACCGT TACAAAAGAAGTGATTGACGATTCACAAGAAATGGGGGATGACGATGAGCCAAAGCAAGAGAGCC CACAGGTAGTTGAAACTACAACAACTACAATGACAAGTCGTGAAT Right flanking sequence: Indices 5993097 -- 5993596 GACAAGATCCGAAGCAGGGGACTCCCATATCACCGAGACAACGAAGACAACGACAGTTGTACGCG AGTTCCACGGAGAGCAACCGGAAGAGACAGAGGAAACAGATGAAGTTGAGGAGTTGCCACCAAAA ATTGAAGAAGAAGATAATGTATCTGAATACAGTGAGAGCTCTACTTCCGTGAGCCGAGAAGTTCG ACCAGATGAGCCACACATCATTGAAACAACTACAACTACAACTGTTACTCGTGAATATCACAATG AACCTGAAGAAACTTATGATGATCAAAAAGATGCGGCTCCAATTTCATTTTCTCAAGAACATCAA GATGACGACTCCCAAGCTTCACACGATCAACATGATCGTGAAAGCCCAGTCGAGAGTGAGAAATC AGTTAAGCATACCACTGAAACTACTACAACCACAACTGTAACTCGCCAACTGTATGACGATGAAG CTTCTGAAATACGAGGAGAATCTCCAGTAGCTACAGAGGAACATG Found at i:5993328 original size:6 final size:6 Alignment explanation
Indices: 5993317--5993334 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 5993307 CATCATTGAA 5993317 ACAACT ACAACT ACAACT 1 ACAACT ACAACT ACAACT 5993335 GTTACTCGTG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17 Consensus pattern (6 bp): ACAACT Left flanking sequence: Indices 5992817 -- 5993316 CTGTTACTCGTGAGTTTGATAAAAATGATTCGGAATCTCCAGTGCCTTCGGAAAAAGAGCAAGAA CCTACAACGGTTTCAAGAGAAGTGTATGAAACAGCAGAAGGTGATGAACCAGAGCACCATTACAC AGAAACTACAACAACGACCGTTACAAAAGAAGTGATTGACGATTCACAAGAAATGGGGGATGACG ATGAGCCAAAGCAAGAGAGCCCACAGGTAGTTGAAACTACAACAACTACAATGACAAGTCGTGAA TATGATGATAATGATGATGAGACAAGATCCGAAGCAGGGGACTCCCATATCACCGAGACAACGAA GACAACGACAGTTGTACGCGAGTTCCACGGAGAGCAACCGGAAGAGACAGAGGAAACAGATGAAG TTGAGGAGTTGCCACCAAAAATTGAAGAAGAAGATAATGTATCTGAATACAGTGAGAGCTCTACT TCCGTGAGCCGAGAAGTTCGACCAGATGAGCCACACATCATTGAA Right flanking sequence: Indices 5993335 -- 5993834 GTTACTCGTGAATATCACAATGAACCTGAAGAAACTTATGATGATCAAAAAGATGCGGCTCCAAT TTCATTTTCTCAAGAACATCAAGATGACGACTCCCAAGCTTCACACGATCAACATGATCGTGAAA GCCCAGTCGAGAGTGAGAAATCAGTTAAGCATACCACTGAAACTACTACAACCACAACTGTAACT CGCCAACTGTATGACGATGAAGCTTCTGAAATACGAGGAGAATCTCCAGTAGCTACAGAGGAACA TGAGCATGTATCTTCAACAAAATCTGATGATGAATCCGAACAACACGTCCCAAGTGTAATCGAGA CTACGACAACAACTACAGTGACCCGCGAATTCTATGATGATCAAGATGAACTTCAACGTGAAGAT CACACTCAGTCCGAAGAACGTCGTTCATCAATTCCTACCGAGGAAACAGAACATGAAGATTCTCA TCTTATCAAAGAGACAACTACCACCACCACAGTAACTCGTGAATT Found at i:5994020 original size:6 final size:6 Alignment explanation
Indices: 5994005--5994021 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 5993995 CAATATTTCC * 5994005 ATGAAG ATGAAT ATGAA 1 ATGAAG ATGAAG ATGAA 5994022 CATCAAGTTC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.53, C:0.00, G:0.24, T:0.24 Consensus pattern (6 bp): ATGAAG Left flanking sequence: Indices 5993505 -- 5994004 AACTACTACAACCACAACTGTAACTCGCCAACTGTATGACGATGAAGCTTCTGAAATACGAGGAG AATCTCCAGTAGCTACAGAGGAACATGAGCATGTATCTTCAACAAAATCTGATGATGAATCCGAA CAACACGTCCCAAGTGTAATCGAGACTACGACAACAACTACAGTGACCCGCGAATTCTATGATGA TCAAGATGAACTTCAACGTGAAGATCACACTCAGTCCGAAGAACGTCGTTCATCAATTCCTACCG AGGAAACAGAACATGAAGATTCTCATCTTATCAAAGAGACAACTACCACCACCACAGTAACTCGT GAATTCTATGATGAACCAGAAAATGTTGAAAAACTCCAGGATTCGCAATTCTCACTTTCTCCATC TTCTCATGTCGAGTCTGAAATTTATGTTCCGGAATCACCAGTTGCTAAACAACAAGAAATTCCAC AAACTCGCGAATTCCATGAAGATTCGCCAGCAGCCCAATATTTCC Right flanking sequence: Indices 5994022 -- 5994521 CATCAAGTTCCTACTGAGCAGGCTCCACTTCTCACCGAGCAACAGCATCAACCAGAATCTGGAGA AGAGAGTGACGGAGAAGGATTCGGAAGTAAGGTTCTTGGATTTGCAAAGAAAGCAGGAATGGTTG CCGGAGGAGTTGTCGCTGCGCCAGTTGCTCTTGCCGCTGTTGGAGCGAAGGCTGCCTACGATGCA CTAAAGAAGGAGGACGATGAAGAAGATCAAGAGGAACGTGAATCCTTAATTCGCGAAGAACGATC TTTTGATTCCCCACATGCATCAGAACAGTCTCAAATTGAGAAAGAACATAAAAGATTCGAGGAAT CCCCAGTGCCGTCAGAAAAACATCATGATCAATCTTCGGCTCTTCCACAAGAATCTGTTAGCCAA CCCATTGAAAAAGAATCAAGGACCTTTAATGATGAATCAGAGTTTGGTGTGAAATCTGATCATTA TACAGAAGATGATCAAGAATCATTGAAATCGCCAAAGGAAAGTGG Found at i:5995338 original size:3 final size:3 Alignment explanation
Indices: 5995324--5995341 Score: 29 Period size: 3 Copynumber: 6.0 Consensus size: 3 5995314 TGTGACAGAG * 5995324 ACA ACT ACA ACA ACA ACA 1 ACA ACA ACA ACA ACA ACA 5995342 GTCACCCGTG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06 Consensus pattern (3 bp): ACA Left flanking sequence: Indices 5994824 -- 5995323 CAACGAGCGACGAAAATCTTTTTGAATCAGACAAATATGCACCAGCATCTCCAGTTCCTTCAGAA GACAGCTCAAACCGCGTTATTGAGACAACTACTACCACTACCGTAACACGTGAGCATTTTGAGCC GGAAGATGATCATTCTTACGTAGTTGAATCTCAAGAATATTCAAGTTCGGGTTCTCCAGTTCCAT CGGAAAAATCTGTTGACAGAGTCATCGAGACTACCACCACAACTACTGTAACTCGTGAACATTTT GAAGCTGAGGATGAAATTCCCACAATTGTTGAATCTAGTCATGATGATCAGGCTGCTTCTCCAGT TCCATCCGAAGAAGACGTTCATGAACAGATCCAGACTACAACTACTACGACCACTGTAACAAAAG AACACTTTGTTCCGGATGACGAAATCGATAGCGAACATATGAATGAATCGGATAAGTATGCATCA GGATCCCCAGTTCCATCAGAAGAAGACTCGAGCCGTGTGACAGAG Right flanking sequence: Indices 5995342 -- 5995841 GTCACCCGTGAGCATTTCGAGCCAGAAGACGACCATTCTCCTGTTGTTCAGACTCAAGAATATTC TGCTTCTGAATCACCAGTTCCATCTGAAAAATCAGTTGAAAGAGTCATCGAGACTACTACCACAA CTACAGTAACCCGTGAGCACTTTGAAGATGAAGATCATATTCTTGGTCAGCAAGGGGAATCTGAC TCTCAAATTCCATCAGAGAGTATCACAAGTGAGAATATGGACCGTGAAACTTCATCATCCCCAGT TCAATCTAACCGTGATGAAGAGTTCGTGTTACCAGCAATTGCACCATATAAACAGCCAACCGAGT ACGGACGTGTAGACTCCCATGATGCACCAGCTTCTCCAGCTCCTTCCGCCGAATCCCCTATTCAA GCTTATAAACAAGAGGAATCACAGGAAGCACATTCTCTTGAGCAATTTCAGCAAAGAAGCTCTGT CAGTCACGAGGATTCTCCTGCTGCTCAATACTTCCATGATAATGA Found at i:5995505 original size:6 final size:6 Alignment explanation
Indices: 5995494--5995506 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 5995484 GTGAGCACTT 5995494 TGAAGA TGAAGA T 1 TGAAGA TGAAGA T 5995507 CATATTCTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23 Consensus pattern (6 bp): TGAAGA Left flanking sequence: Indices 5994994 -- 5995493 TCAAGTTCGGGTTCTCCAGTTCCATCGGAAAAATCTGTTGACAGAGTCATCGAGACTACCACCAC AACTACTGTAACTCGTGAACATTTTGAAGCTGAGGATGAAATTCCCACAATTGTTGAATCTAGTC ATGATGATCAGGCTGCTTCTCCAGTTCCATCCGAAGAAGACGTTCATGAACAGATCCAGACTACA ACTACTACGACCACTGTAACAAAAGAACACTTTGTTCCGGATGACGAAATCGATAGCGAACATAT GAATGAATCGGATAAGTATGCATCAGGATCCCCAGTTCCATCAGAAGAAGACTCGAGCCGTGTGA CAGAGACAACTACAACAACAACAGTCACCCGTGAGCATTTCGAGCCAGAAGACGACCATTCTCCT GTTGTTCAGACTCAAGAATATTCTGCTTCTGAATCACCAGTTCCATCTGAAAAATCAGTTGAAAG AGTCATCGAGACTACTACCACAACTACAGTAACCCGTGAGCACTT Right flanking sequence: Indices 5995507 -- 5996006 CATATTCTTGGTCAGCAAGGGGAATCTGACTCTCAAATTCCATCAGAGAGTATCACAAGTGAGAA TATGGACCGTGAAACTTCATCATCCCCAGTTCAATCTAACCGTGATGAAGAGTTCGTGTTACCAG CAATTGCACCATATAAACAGCCAACCGAGTACGGACGTGTAGACTCCCATGATGCACCAGCTTCT CCAGCTCCTTCCGCCGAATCCCCTATTCAAGCTTATAAACAAGAGGAATCACAGGAAGCACATTC TCTTGAGCAATTTCAGCAAAGAAGCTCTGTCAGTCACGAGGATTCTCCTGCTGCTCAATACTTCC ATGATAATGAATCAGATCACGATTCACCCGTTCCATCGGATCGCGCTCCACTTCTCACCGAGCAA CAGCATCAACCAGAATCTGGAGAAGAGAGTGACGGAGAAGGATTCGGAAGTAAGGTTCTTGGATT TGCAAAGAAAGCAGGAATGGTTGCCGGAGGAGTTGTCGCTGCGCC Found at i:5996818 original size:6 final size:6 Alignment explanation
Indices: 5996809--5996822 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 5996799 TGAAGTATCA 5996809 GAAGAT GAAGAT GA 1 GAAGAT GAAGAT GA 5996823 GCATCAACAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.36, T:0.14 Consensus pattern (6 bp): GAAGAT Left flanking sequence: Indices 5996309 -- 5996808 AACATGACATTTCCGAGCAGTATGCTCCTGAATCGCCAGTTGAACAAGATCCATATGTTGTTGAG AAGACCACAACTGTGATTCGGCAATACCATGATGAACCACCGCAGGAAATTGAAGAACAGACTAT TCCAGAAGAAGTCACCGTTCTTCGTGAAGTTTATGAAAGTCCTGAAGGAGATGAGCCTGAACAAC ATTATATTGAGACAAAAACAACAACTACCATAACAAAAGAAGTTCATGTTCCAGTTGAAGAAGAT GTTCAGATCTCCCCTGTGCATTCCGAAACATCAGTTTCTGAGAAACAGCTACCAGCTGATGAGCA ACTCGATGAACCAGTAACCGAAAGTACAACGACAGCCACTGTCACGCGTGAACGATATGAAGAAC CAGAAGAAGTAAGACCTCCATCTGGATCCGAGGCTGATGATGAGTCCCATGCGCCAAAGTACATG GAGACGACTACAACAACAACTGTAACTCGTGAATATGAAGTATCA Right flanking sequence: Indices 5996823 -- 5997322 GCATCAACAAAGTCAAGTACAGAGAGATGAATCTCCTGCTCCATCAGAGGATTCTGTTAAGCACG TTATTGAAAAGACAACAACTACTACTGTAACTGAAGAACGCTACGAACCAGAAGATTCACATTCT CCAGTTCCATCAGAAGACGATGTTCATGGATTTGTAAAGACAACAACTACTACGACTACAGTAAC TCACGAACATTTTGAACCTGAAGATCCCCCTAGCGACGAGCATGTTGTTGAATCGGAAAGGTATG CGTCAGGATCACCAGTTCCATCAGAAGAAGACTCGAGCCGCGAGATTGAAACAACTACCACGACA ACAGTAACTCGTGAGCACTTTGAGCTAGAAGACGACCAGGAACACGTAGTAGAATCTCAAGAGTA TTCTGCTTCGGGTTCTCCAGTGCCATCTGAAAAATCAGTTGAAAGAGTTATCGAGACTACCACAA CAAACACAGTAACCCGTGAGCACTTTGAACATGAAGATGATATTC Found at i:5997421 original size:3 final size:3 Alignment explanation
Indices: 5997406--5997422 Score: 27 Period size: 3 Copynumber: 5.7 Consensus size: 3 5997396 GATCCAGACT * 5997406 ACA ACA ACC ACA ACA AC 1 ACA ACA ACA ACA ACA AC 5997423 TGTGACAAGA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.59, C:0.41, G:0.00, T:0.00 Consensus pattern (3 bp): ACA Left flanking sequence: Indices 5996906 -- 5997405 CTACTACTGTAACTGAAGAACGCTACGAACCAGAAGATTCACATTCTCCAGTTCCATCAGAAGAC GATGTTCATGGATTTGTAAAGACAACAACTACTACGACTACAGTAACTCACGAACATTTTGAACC TGAAGATCCCCCTAGCGACGAGCATGTTGTTGAATCGGAAAGGTATGCGTCAGGATCACCAGTTC CATCAGAAGAAGACTCGAGCCGCGAGATTGAAACAACTACCACGACAACAGTAACTCGTGAGCAC TTTGAGCTAGAAGACGACCAGGAACACGTAGTAGAATCTCAAGAGTATTCTGCTTCGGGTTCTCC AGTGCCATCTGAAAAATCAGTTGAAAGAGTTATCGAGACTACCACAACAAACACAGTAACCCGTG AGCACTTTGAACATGAAGATGATATTCCTACAATTGTTGAAACAAGTCATGACGATCCGGCTGCT TCTTCAGTTCCATCCGAAGAAGACGTTCATGGACAGATCCAGACT Right flanking sequence: Indices 5997423 -- 5997922 TGTGACAAGAGAACACGTTGTTCCGGATGAAGAAATCGATAGCGGACGTATGGATGAATTGGAGA AGTATTCATCAGAATCTCCAGTTCCATCAGAGGAAGACTCAAGCCGTGTGATTGAGACAACTACC ACGACAACAGTTAGCCGTGAGCATTTTGAGCCAGAAGACGATCATTCCCATGTTGTTGAGTCTCA AGAATATTCTGCATCGGGATCACCAGTTCCATCGGAAAAATCGGTTGAAAGAGTCATCGAGACTA CTACCACAACTACAGTGACTCGCGAACATTTCGATACTGAAGAAGACTATATTCCATCTGAATCT AGAACATCTCATGATGACGGAATCACTGATCAACATGTTCCATCTCAATCTCCAGTTCCATCGGA AGAAGACGACCATGTAACTCATGAACAAATTATTCGAGATGATCCAATTGATGAACAAATCGTCG AATCACATGAATATAAATCAGAGTCTTCAATTCCATCGGAGCAAG Found at i:5999780 original size:6 final size:6 Alignment explanation
Indices: 5999766--5999781 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 5999756 GTGAGCACTT * 5999766 TGAACA TGAAGA TGAA 1 TGAACA TGAACA TGAA 5999782 ATTCCCACAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19 Consensus pattern (6 bp): TGAACA Left flanking sequence: Indices 5999266 -- 5999765 CCACGCGAAGAAGATGACTCACATGTAATTGAATCACATGAGTATACATCATCTCCCGTTCCATC AGAAGATTCTGTTAAGCACGTTATTGAAAAGACAACAACTACTACTGTAACTGAAGAACGCTACG AACCTGAAGATTCACATTCTCCCGTTCCATCAGAAGACGATGTTCATGGATTTGTAAAGACAACA ACCACAACGACTACAGTAACTCATGAACATTTTGAACCTGAAGATCACACTAGCGACGAGCATGT TGTTGAATCGGAAAGGTATGCGTCAGGATCACCAGTTCCATCAGAAGAAAACTCGAACCGTGTGA CTGAGACAACTACTACAACAACCGTAACTCGTGAGCACTTCGAGCCAGAAGACGACCAGGAACAC GTAGTAGAATCTCAAGAGTATTCTGCCTCTGGTTCTCCAGTTCCATCTGAAAAATCAGTTGAAAA AGTTATCGAGACTACCACCACAACCACAGTAACTCGTGAGCACTT Right flanking sequence: Indices 5999782 -- 6000281 ATTCCCACAATTGTTGAATCTAGTCATGATGACCAGGCTGCTTCTTCAGTTCCATCCGAAGAAGA CGTTCATGGACAGATCCAGACTACAACAACCACAACAACTGTGACAAGAGAACACGTTGTTCCGG ATGAAGAAATCGATAGCGGACGTATGGATGAATTGGAGAAGTATTCATCAGAATCTCCAGTTCCG CCAGAGGAAGACTCAAGCCGCGTGATTGAAACAACTACCACGACAACATTTATCCGTGAGCATTT TGAGCCAGAAGACGATCATTCTCATGTTGTTGGATCCCAAGAATATTCTGCTTCTGGATCACCAG TACCATCTGAAAAATCAGTTGAAAGGGTCATCGAGACTACTACCACAACTACAGTAACAAGTGAG CACTTTGAACATGAAGATGAACATGCTCAGCTTCATGATACTGTTTCATCAGAGAAAACATCTTC AAGTGAACCAGTTGAACAGACTTTGGAGGAAGCTGATATTACCGA Found at i:5999884 original size:3 final size:3 Alignment explanation
Indices: 5999869--5999885 Score: 27 Period size: 3 Copynumber: 5.7 Consensus size: 3 5999859 GATCCAGACT * 5999869 ACA ACA ACC ACA ACA AC 1 ACA ACA ACA ACA ACA AC 5999886 TGTGACAAGA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.59, C:0.41, G:0.00, T:0.00 Consensus pattern (3 bp): ACA Left flanking sequence: Indices 5999369 -- 5999868 CTACTACTGTAACTGAAGAACGCTACGAACCTGAAGATTCACATTCTCCCGTTCCATCAGAAGAC GATGTTCATGGATTTGTAAAGACAACAACCACAACGACTACAGTAACTCATGAACATTTTGAACC TGAAGATCACACTAGCGACGAGCATGTTGTTGAATCGGAAAGGTATGCGTCAGGATCACCAGTTC CATCAGAAGAAAACTCGAACCGTGTGACTGAGACAACTACTACAACAACCGTAACTCGTGAGCAC TTCGAGCCAGAAGACGACCAGGAACACGTAGTAGAATCTCAAGAGTATTCTGCCTCTGGTTCTCC AGTTCCATCTGAAAAATCAGTTGAAAAAGTTATCGAGACTACCACCACAACCACAGTAACTCGTG AGCACTTTGAACATGAAGATGAAATTCCCACAATTGTTGAATCTAGTCATGATGACCAGGCTGCT TCTTCAGTTCCATCCGAAGAAGACGTTCATGGACAGATCCAGACT Right flanking sequence: Indices 5999886 -- 6000385 TGTGACAAGAGAACACGTTGTTCCGGATGAAGAAATCGATAGCGGACGTATGGATGAATTGGAGA AGTATTCATCAGAATCTCCAGTTCCGCCAGAGGAAGACTCAAGCCGCGTGATTGAAACAACTACC ACGACAACATTTATCCGTGAGCATTTTGAGCCAGAAGACGATCATTCTCATGTTGTTGGATCCCA AGAATATTCTGCTTCTGGATCACCAGTACCATCTGAAAAATCAGTTGAAAGGGTCATCGAGACTA CTACCACAACTACAGTAACAAGTGAGCACTTTGAACATGAAGATGAACATGCTCAGCTTCATGAT ACTGTTTCATCAGAGAAAACATCTTCAAGTGAACCAGTTGAACAGACTTTGGAGGAAGCTGATAT TACCGAAGAGACTCATCAACGTTTCTCCGCTGAAGATGAACATCAGCCAACCTCAACAGAAAAAC CAGTTCATGGATTTATGGAAACCACATCTACCAGCCACACAGCTA Found at i:6000191 original size:6 final size:6 Alignment explanation
Indices: 6000177--6000196 Score: 33 Period size: 6 Copynumber: 3.3 Consensus size: 6 6000167 GTGAGCACTT * 6000177 TGAACA TGAAGA TGAACA TG 1 TGAACA TGAACA TGAACA TG 6000197 CTCAGCTTCA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.45, C:0.10, G:0.25, T:0.20 Consensus pattern (6 bp): TGAACA Left flanking sequence: Indices 5999677 -- 6000176 TCTGCCTCTGGTTCTCCAGTTCCATCTGAAAAATCAGTTGAAAAAGTTATCGAGACTACCACCAC AACCACAGTAACTCGTGAGCACTTTGAACATGAAGATGAAATTCCCACAATTGTTGAATCTAGTC ATGATGACCAGGCTGCTTCTTCAGTTCCATCCGAAGAAGACGTTCATGGACAGATCCAGACTACA ACAACCACAACAACTGTGACAAGAGAACACGTTGTTCCGGATGAAGAAATCGATAGCGGACGTAT GGATGAATTGGAGAAGTATTCATCAGAATCTCCAGTTCCGCCAGAGGAAGACTCAAGCCGCGTGA TTGAAACAACTACCACGACAACATTTATCCGTGAGCATTTTGAGCCAGAAGACGATCATTCTCAT GTTGTTGGATCCCAAGAATATTCTGCTTCTGGATCACCAGTACCATCTGAAAAATCAGTTGAAAG GGTCATCGAGACTACTACCACAACTACAGTAACAAGTGAGCACTT Right flanking sequence: Indices 6000197 -- 6000696 CTCAGCTTCATGATACTGTTTCATCAGAGAAAACATCTTCAAGTGAACCAGTTGAACAGACTTTG GAGGAAGCTGATATTACCGAAGAGACTCATCAACGTTTCTCCGCTGAAGATGAACATCAGCCAAC CTCAACAGAAAAACCAGTTCATGGATTTATGGAAACCACATCTACCAGCCACACAGCTAGCCATG TTGAACTTGAGCATAGGGATGATGACGATGAAAGTGGTGGAGAAGGATTCGGAAGTAAGGTTCTT GGATTTGCAAAGAAAGCAGGAATGGTTGCTGGAGGAGTTGTTGCTGCTCCAGTTGCACTTGCTGC TGTTGGAGCAAAGGCTGCCTACGACGCTCTTAAGAAAGATGACGATGAGGAAGCCACATATGATC TTGATAGAGAACACGGTTCATATGAATCTGCTGAGCTTCAACGGCCAACTCAACAAGTGGAGTCC CGCCAAGAAGATTCCGAATCCGAAGGATCATTTGTAGATCACGGA Found at i:6002920 original size:6 final size:6 Alignment explanation
Indices: 6002905--6002920 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 6002895 TATTCGTGAG * 6002905 GAATCA GAAGCA GAAG 1 GAAGCA GAAGCA GAAG 6002921 ATATGAGCAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.50, C:0.12, G:0.31, T:0.06 Consensus pattern (6 bp): GAAGCA Left flanking sequence: Indices 6002405 -- 6002904 CTGATTCAGTGCAAGAGCATCAACAAAAAGATCAGGAACAAGCTGAAGCAGAAGATCAAAGGGAA GCAGAAGATCTTGGTTTTGAAGTCTACGATGCTGATACGGAAGAACAAAATCAACAGTTAGAAGA ACTGGAAACTGTTGAAGAAGAGCCAGAAGACTCTGATTCACTGAACGAAGGAGGAAATCATTCAT CTGGACATTCCTCTGTCGGAGTTCCAGCTGATACTCTTGCCATGATTGGCAAGTATCGCCATCAA TCAAGTGACAATCTCTCATTAACATCACTTCAAGAGTTTGAAAGGCTTGAAAAAGAAGTAGGAGC TCGTGGAGATGGTTCACTAACAAGATCTGAAATTGAATTGCTTGTTGCCGGAAGATTGAACAAAT CAGGAGAAGGATCAGTCAGCTCACTTGCTGAGTTCGAACGCCTCGAAAAAGAGATGACCGAGAAT CAATCCCCACCAGAAGATGTTATGATGCTTTCTGATATTCGTGAG Right flanking sequence: Indices 6002921 -- 6003420 ATATGAGCATTCGAGATGATGATGAGGAAGATGCAGAAGGAAGTGATACAGAATTGAAGAGCAGA CCAGTACAGGAAGAAGATCTCAGAGTTATCACACCAATTGCTCCATCACCAACTGATTCTCTTGA TCATGCAGTTGATGCCGTTCAGATGCAATATCTCGAGACAAGCACCGACTCTTTGGAGCCAACGT TCCAAGAAATTGAAGTTGAGCAACGTCCAGAAAGTGTTGAAGACACATCACTAACTGAGTATGAG GTCATTCCACGCGTCATGGAGGCCAGCACCACCGACTCGCTAGATGGAACTGCAACTATTGAGAA GGTAGGTTCTAGTTAAAAATACTTAATAAAGATACAAAATAAAAATTGTTTTACAGGACTCTGTG CTCGAAGGCGCCAGCCAAGGAATTGAATCAACTCAATCTACACATGGACTCCTCTCCGGTGACAC AATGGGAACAGTGGTCACTGATGATGATCGAGATTCTTTGGATGG Found at i:6004506 original size:6 final size:6 Alignment explanation
Indices: 6004491--6004506 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 6004481 ATGTTTCAAG * 6004491 CTTTAT CTTTAA CTTT 1 CTTTAA CTTTAA CTTT 6004507 TCATGTTTTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62 Consensus pattern (6 bp): CTTTAA Left flanking sequence: Indices 6003991 -- 6004490 CACGACCAACAGCAACCACACTTTTAAGGTAAGAGAAGTATCTTGAATTATCATTAAAAAATTTT TGAATCACCAAAAAAATTCTGAAAACTTACACAGATCTTAAATAAATATATTTCAGAGTTCATCG CCAAACATCACACCCACTTCAAATATAACTTCTCAAATATATTCCACTCAACACAACATTTAGTT CTCTTATATTCTAATACATTCCATATTTTTTGATCCCACAATTTACCAGTTTTCACCCCCTAATC CAGTGACTTGAGCTTACAGTATTTTTGTTTTTTTTCCATGAGCTTTTAATTTATTTTTTATTTTT CAAAAAAGATCCAATCAGTAAATACAATTTCTTCGCCCCAAAGAATTTGTATTTTTTTATAGAAA TTTGAAATGATATTCAAGATGCCCCAACTTGAATATCATTCAATAGCTTTCCATCATTTAATTTT CTGAAAATCGCCCCAATTTTCAGACAATTTCAGAAATGTTTCAAG Right flanking sequence: Indices 6004507 -- 6005006 TCATGTTTTAAGCTTTCATCTGCCCAACTTCTACCAATATTTCAATGATTTTCTCAGAGTTGTTA GCCCCAAACATCTTCTGAATTATTATAGAAATTTTTTTCAGTAATTAACTTCTACCATTTCCCAT CATCTTTGTTGTATTTCGTTTTTAGTCTACGCGGTTTTCCTTTTTTTTTAATTTTAGAGCTCTAA ATGTAAAAGTTCTTTACAAAAAACAACTAGTCACTCTAAAAATGCGCTCCCCATTTCCATCTTTT CATGTTTTTTTTTCTCATTTTTTCGTTCAATTATTGATTTGAATTATTCATTTGCTAATAAAGCT TTGCTTTAATAATATAAAAATTATTTCAAGTAACAAAAACATTTAAACTTAAAAACTATAAGACA GCTTCAATTTCAGACAAGTTTCACATTTTGTCTTATGTTTAAATTGTATAAATTTTACAATATTT ATGTATATGTTTAAGAGTATTTTCTGCAAAAAAAAACATTGTAAT Found at i:6006696 original size:6 final size:6 Alignment explanation
Indices: 6006682--6006697 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 6006672 CTTGTCAAGT * 6006682 CTGGAC CTGGTC CTGG 1 CTGGAC CTGGAC CTGG 6006698 CGTCCAATGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.06, C:0.31, G:0.38, T:0.25 Consensus pattern (6 bp): CTGGAC Left flanking sequence: Indices 6006182 -- 6006681 CTGGATAGACAAATGAAGCGAATGGAGAAGTCTCTAGCAATTTGCCAGAAGGAAGATGGATTCTT GTCGATTTGGACAGGAATGTCGTCATAGTCGTCATTGTTGGGAGTTGTCATTTGAGTTGTGGTAA CTGTCTGTTGTCTAGAATGATTTGTTTTATTGCCGGTTACCACCCGGCTGGTCGCGAAAATACGG GATGTATCTCGGTTTGTCTGCTGTCGCTGGGAAGTTGCGAACGTCTCGGTAAAATTCCTTCAGTC TACATCCTGCTGGATGATGTCTTCCGGAGCAGTAGGTGCACTTCAACGTCGAGTAGCACATCGAT GAGGAGTGTCTTTCACCTGCACAAACAGCGCACCGGTTGTCGTTCGCGATGAATCGTCTGACTTC GAAGCTCGCAAGCGGGCATCTCAGAAGGGTATGTCCGACACCGCAAATTTGGCAGTTACGGTCCA TCATTTGTCTGTTAACGGGAAATGTGTATTGAAGCCTTGTCAAGT Right flanking sequence: Indices 6006698 -- 6007197 CGTCCAATGCGTTTCATACCCATCGTGCTCTAGAGTAGCTCTTAGAGCTTCTGACATTGTAATTT GGTGACCTTCGGTCACTGTTGGAGAAAGCTTGTTGTTCTTGGGTCTGTCATTGTCTGGTGTATGA GTCTTGAAACCTTTGTTGTTGTGTCTATTTTGATTTCCCTGGTTTTGGTTGTAAGCCATCACTGG GATCTCTAGTCCTTCTTTCATAGTCTTTGGTCTAGCTGATTCGTCATCTTCTTGTCCTCTCATGT CTCTGATGCATTTCATTCTTTGCAGGTAGCGTTCGGAGGCAGAGACGACGTCTTGTAAGGACAGA GTTTTCTTTTCGTCGCTCATTTGGTCGGTGAAGTTCTTCATGATTTCGAACGGCATCTTGCCAAG AACGTCGGAGATATCACTCTTATCCATTTTATGGATGTTGATGGCTCTCATTTGTCTGAAGATCT TTTGGAACATAATAATGTCCCTTCGGATTGTCTTGAAATTAGTCT Found at i:6009536 original size:6 final size:6 Alignment explanation
Indices: 6009525--6009537 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 6009515 CCACTACACT 6009525 AAAGGA AAAGGA A 1 AAAGGA AAAGGA A 6009538 TAGTCTTTGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00 Consensus pattern (6 bp): AAAGGA Left flanking sequence: Indices 6009025 -- 6009524 AGTTCCCTGTATTGTAGGTTTTTGGGCCAAGAGTTCCCAGGGTAAAGAGTCCCCGTACAAATGAA AGGTTTTAAGGATTGGATACCTAGGGTTAAGAGTCCCCACACACTGAAAGGTTTTAAGGAATTTT TTGAGGATTCCTAGGGTTAAGAGTCCCCACACACTGAAAGGTTTTAAGGAATTTTTTGAGGATTC CTAGGGTTAAGAGTCCCCACACACTGAAAGGTTTTAAGGAATTTTTTGAGGATTCCTAGGGTTAA GAGTCCCCACACACTGAAAGGTTTTAAGGAATTTTTTGAGGATTCCTAGGGTTAAGAGTCCCCAC ACACTGAAAGGTTTTAAGGAATTTTTTTGAGGATTCCTAGGGTTAAGAGTCCCCTGTAGAGTAAT GAATGGAAGGGAATGTCCGGGGCTAAGAGTTCCGCCGGCATTGGGGGGAGAAGCTACTGTGTGTG GCCAACCGTCAGGGACACCTAGTTGGGAGTGCTGACCACTACACT Right flanking sequence: Indices 6009538 -- 6010037 TAGTCTTTGCGTCTGGTAAAAAAAAGAAAAGGAAAAAGAAAAAAGGGGAACCAAAACAAGTAGTC CAAACTCCACTCGAATTGTCCGCCCAAGTTCTTGTTTGACACCGCATAGTCATGCCTGACCATGC ATAGAGTCGCCAAAGTCTCCTCTGGCCTGAGGAAATCACCGAAAGTTGCCACTCAATGTAGATCT TCTTTCTTCTTCGCCGATGATTGGAGGGTAGCTAGTCCTCCGTCTAAGGGTTTTTTAGTATGTAT CGACCCTTTCGGTGTCTATTGCTAGATCTTTGGATAGTCTTGTCTCTTGAAGGTGTCGTCGAAGA ACCCGGCGTCGCACCACAAGCCCGCGAACTTGTGATACTAAACAGTCAGGCGCAAAAACTCGTAG TCTTTTTGCTAAACAGCGGTACAGAGGCACGTACAGTGTACCCTGCGAAGTATAAAAATAAATAA ATAATTAGTCGTTATGTATCCGCGCCAGCCAGTCTTCATATGCCA Found at