TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:10543041 original size:6 final size:6 Alignment explanation
Indices: 10543030--10543042 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10543020 CAAAGAATAA 10543030 TGGCAT TGGCAT T 1 TGGCAT TGGCAT T 10543043 TGAACCCATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38 Consensus pattern (6 bp): TGGCAT Left flanking sequence: Indices 10542530 -- 10543029 GAATTAATTTCTGAACTCTATGTAGATGTTCAATGTCACTCGAAATTTTATGTATTTCAGTTCAA AGTGTCAATTCAAATGTCCATAAAGAAATATATTCACAAAATGTTTAACACCACGTGGTTTTCTC ATTTTACATTCCATTTTCAACAAACAAGGCCATCGACCAACCTTTGTGACCGACATAATCGCAAT GTTCTCTGCATAAGTGGTAACTCCAGTTCCAACTCCCCAAAGAGCAGCCAAAATGCAACCGATTC CTTCAACGACGAATGCTCGATTCGTATTGGATGGTGGTGGACGGCTTTGCTTGGAGATCTTGGCA CAGAGGTCTGAGAAGATAAAAATGTATATGAAAATTTCTTGACAAACTAAAATTAATTTTCAGTA AATCTAGGAAACTTACTGTAATCTCCGATACTTTCGATCATTGCTGCAAAACAAGAAGCAGTGAA CCCGCAAACTAAAGCCAAGTTAAATTTAGGGGGTCCAAAGAATAA Right flanking sequence: Indices 10543043 -- 10543542 TGAACCCATGGTGTCTGATCGAAAACGGTGATACTAGCATTTTGATCAGTACGAGCTTCTCCTCC ACGAGGTTCTGCATTTGTAATTGTCATTATGAAACATATGAACCAAACTATGGAAATTCCAAGGA GATACTGGAAGAGTTTGTTTTCAGGTTTTTAATTGGCTTCGAGAACTTACAGGGAATTGACTGAA AATTTTTTGACGTGTGAACTTGAATTTCTTCTCCGAAAGTGAAAATATTGGAATTGGAACTTCAT AACGTTCCAAAATCACGACGAATAAGATGAGAGTCAGAAATTCCCTGAAAAAAAAATCAATTTTT TCTTTCTATCATCCCAAAGAAATAGTTTTGATTTTTCAATAACAACTTTTGCACAATTTTGTAAC AATAAAATCTCTTATCACATTGAATTAAAGATTGGTCGCTGAATTTTAAAAGTGTTTACTCTTTT TGATTCACATAATTTCAACCACCTTTTCGGGAATTCCTGTGCGGG Found at i:10543293 original size:6 final size:6 Alignment explanation
Indices: 10543284--10543296 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10543274 AAGTGAAAAT 10543284 ATTGGA ATTGGA A 1 ATTGGA ATTGGA A 10543297 CTTCATAACG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31 Consensus pattern (6 bp): ATTGGA Left flanking sequence: Indices 10542784 -- 10543283 CGATTCCTTCAACGACGAATGCTCGATTCGTATTGGATGGTGGTGGACGGCTTTGCTTGGAGATC TTGGCACAGAGGTCTGAGAAGATAAAAATGTATATGAAAATTTCTTGACAAACTAAAATTAATTT TCAGTAAATCTAGGAAACTTACTGTAATCTCCGATACTTTCGATCATTGCTGCAAAACAAGAAGC AGTGAACCCGCAAACTAAAGCCAAGTTAAATTTAGGGGGTCCAAAGAATAATGGCATTGGCATTT GAACCCATGGTGTCTGATCGAAAACGGTGATACTAGCATTTTGATCAGTACGAGCTTCTCCTCCA CGAGGTTCTGCATTTGTAATTGTCATTATGAAACATATGAACCAAACTATGGAAATTCCAAGGAG ATACTGGAAGAGTTTGTTTTCAGGTTTTTAATTGGCTTCGAGAACTTACAGGGAATTGACTGAAA ATTTTTTGACGTGTGAACTTGAATTTCTTCTCCGAAAGTGAAAAT Right flanking sequence: Indices 10543297 -- 10543796 CTTCATAACGTTCCAAAATCACGACGAATAAGATGAGAGTCAGAAATTCCCTGAAAAAAAAATCA ATTTTTTCTTTCTATCATCCCAAAGAAATAGTTTTGATTTTTCAATAACAACTTTTGCACAATTT TGTAACAATAAAATCTCTTATCACATTGAATTAAAGATTGGTCGCTGAATTTTAAAAGTGTTTAC TCTTTTTGATTCACATAATTTCAACCACCTTTTCGGGAATTCCTGTGCGGGAAATGCTGATAACC TCCTTATCATCTTATTTTCGGAGGTTGACTTTTAAAAGTTATAGCACACAGCTGATCAACGTCAT TGTTCATGTGATCATTGATTATTTTTTTTTCTTATGAAGAAAATGTTTTGCAAATTTTTTTCCAA AATGGCAGTGAGAAAGTACAAACTTACACAATCGAAATCCAGTGAAGTGCCATTTTCGATTCAAT ATCAGGTACGGTACCAATTGTTAATAAACTCATAATGGGTACAAT Found at i:10546112 original size:5 final size:5 Alignment explanation
Indices: 10546102--10546114 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10546092 TTCAATCATC 10546102 TACAA TACAA TAC 1 TACAA TACAA TAC 10546115 TCACAGACTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23 Consensus pattern (5 bp): TACAA Left flanking sequence: Indices 10545602 -- 10546101 CGTTTTAATACAAACCAGTTTTTGAATGAGATCATCAAAATGTGTTCTGAATGTGAAAACAACTG AGTTACCAATAAACAACATTTTTAGAATTTTTGGTGGATATTTTATGTATGTAAAATTGTTTTTT GGTCGTACTGAGTCGTACTGAAATACAATTTTAAGTGATTTATGTTTATCTAAATTTTTGAATGG TAGCGTCCTATTTTTTTGGAAACTTGGTTTGAAATGATAGACAATGAGGCGCAAATAAAAAAGAT TCTAAAACTTTTTTAAAATTCTTCATCTGAACTTGAAAAATATATAAATTTTTTTCTATTTCTCG GCAAATATTTATGTTTTTTCAGTTTTATTTTTTTGTTTTGATGGTTTAAATTGAACCGAAGAAAA ACAACAAAAAAAAATTATAATTTTTGTTCGAAAAACGGAAAAAAGAGATTTCGAAAAGTGGGCGT GGGCAATTCTTCCTTTTTGGTGAATACAGTCCATTTTCAATCATC Right flanking sequence: Indices 10546115 -- 10546614 TCACAGACTCTATATTATAATCTTTGAAATTAATTAACAGTCACAACAATTCGACCAACTTCTTC ATGATGTTTTGAATTTAACGACGTGGAGTTTAGTCTTTCATGGTTTATGATGGCCAAGGGACCGA TGGAAATAAATTGAAATTAAATTATGAAAAGGGAACAATTTGACCGAATGATCTTTCTCACAGGC AACTGATGCAATGATAAGAGACTGACAAAAACCAGTTAAAAATATCTTGTTTGGTGAAGATATTG GAAAAAAGGCAAAAGCCGTTAAAAGTCATTAAAGGATTAACTTATCAAGTACATTGAAGTTTTCT CTCTATTTAGTTTTGTGAGATGTCATGCCTTCACAGTGTGAAGTTTGAAGATGTTTGAATTGGTT GGCAAATTCGGATTTGGATGCGTTGTAGATTATGACTGGATTAGACAAAGAATGGTGCGGTTGTT TTTATCGTAACAAAAAACAAATCCATAATTAAATCAAGGAGATTG Found at i:10546268 original size:5 final size:5 Alignment explanation
Indices: 10546251--10546268 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 10546241 CCGATGGAAA 10546251 TAAAT TGAAAT TAAAT TA 1 TAAAT T-AAAT TAAAT TA 10546269 TGAAAAGGGA Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 5 7 0.58 6 5 0.42 ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39 Consensus pattern (5 bp): TAAAT Left flanking sequence: Indices 10545751 -- 10546250 GAAATACAATTTTAAGTGATTTATGTTTATCTAAATTTTTGAATGGTAGCGTCCTATTTTTTTGG AAACTTGGTTTGAAATGATAGACAATGAGGCGCAAATAAAAAAGATTCTAAAACTTTTTTAAAAT TCTTCATCTGAACTTGAAAAATATATAAATTTTTTTCTATTTCTCGGCAAATATTTATGTTTTTT CAGTTTTATTTTTTTGTTTTGATGGTTTAAATTGAACCGAAGAAAAACAACAAAAAAAAATTATA ATTTTTGTTCGAAAAACGGAAAAAAGAGATTTCGAAAAGTGGGCGTGGGCAATTCTTCCTTTTTG GTGAATACAGTCCATTTTCAATCATCTACAATACAATACTCACAGACTCTATATTATAATCTTTG AAATTAATTAACAGTCACAACAATTCGACCAACTTCTTCATGATGTTTTGAATTTAACGACGTGG AGTTTAGTCTTTCATGGTTTATGATGGCCAAGGGACCGATGGAAA Right flanking sequence: Indices 10546269 -- 10546768 TGAAAAGGGAACAATTTGACCGAATGATCTTTCTCACAGGCAACTGATGCAATGATAAGAGACTG ACAAAAACCAGTTAAAAATATCTTGTTTGGTGAAGATATTGGAAAAAAGGCAAAAGCCGTTAAAA GTCATTAAAGGATTAACTTATCAAGTACATTGAAGTTTTCTCTCTATTTAGTTTTGTGAGATGTC ATGCCTTCACAGTGTGAAGTTTGAAGATGTTTGAATTGGTTGGCAAATTCGGATTTGGATGCGTT GTAGATTATGACTGGATTAGACAAAGAATGGTGCGGTTGTTTTTATCGTAACAAAAAACAAATCC ATAATTAAATCAAGGAGATTGCTATGGCAGTAATTGTGATTTATTAATATTTGGAAACAAATTGA GCTTTCTTTTTTCTAAGTGCAAGTGCAACATGCTGCTTACAAAAGAAGCACGATTGCTAAACAAT ACAGAAAATTTTTTCAACTACCGTATGCATTAAAGGCGCATCACA Found at i:10546684 original size:6 final size:6 Alignment explanation
Indices: 10546673--10546686 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10546663 TCTTTTTTCT 10546673 AAGTGC AAGTGC AA 1 AAGTGC AAGTGC AA 10546687 CATGCTGCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14 Consensus pattern (6 bp): AAGTGC Left flanking sequence: Indices 10546173 -- 10546672 CTTCTTCATGATGTTTTGAATTTAACGACGTGGAGTTTAGTCTTTCATGGTTTATGATGGCCAAG GGACCGATGGAAATAAATTGAAATTAAATTATGAAAAGGGAACAATTTGACCGAATGATCTTTCT CACAGGCAACTGATGCAATGATAAGAGACTGACAAAAACCAGTTAAAAATATCTTGTTTGGTGAA GATATTGGAAAAAAGGCAAAAGCCGTTAAAAGTCATTAAAGGATTAACTTATCAAGTACATTGAA GTTTTCTCTCTATTTAGTTTTGTGAGATGTCATGCCTTCACAGTGTGAAGTTTGAAGATGTTTGA ATTGGTTGGCAAATTCGGATTTGGATGCGTTGTAGATTATGACTGGATTAGACAAAGAATGGTGC GGTTGTTTTTATCGTAACAAAAAACAAATCCATAATTAAATCAAGGAGATTGCTATGGCAGTAAT TGTGATTTATTAATATTTGGAAACAAATTGAGCTTTCTTTTTTCT Right flanking sequence: Indices 10546687 -- 10547186 CATGCTGCTTACAAAAGAAGCACGATTGCTAAACAATACAGAAAATTTTTTCAACTACCGTATGC ATTAAAGGCGCATCACACATTTGGCTGGGGTCTCGCGACGACCAGTCCTTTCTTCAAAACACTCA AATTTTCATCGCTCTTTTTAAGTTTTTTTAAAATTGTTTTTGTTTTGTAAATTTAAATTTTATTA GCTTTGTGAAATTTTCTATTCAACATCTAAACAAAGTTAAAAAAAAAACTTGAAATTCAAAATTC TTACTTCTCTTGTGGATGCCTTTATTATTGCGATACATTCACTGTGTTCGTTTTAAATTTCCTTT TAAAAATGCAGTTTTAAAAGTGTTTCATTGTCATTTTATATTTTCCAGATGACTTGTGATGATTG GAACAGTTATATTCAAGTGAACATTTATGGAAAAACCATAGAAGGACTTCAGCAGCAAGGAGTTG TGTTGGAATCTCTTTTGGTTAGTTCGATGATGAAATTTCATCTCT Found at i:10546861 original size:6 final size:6 Alignment explanation
Indices: 10546850--10546862 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10546840 TTTTTTAAAA 10546850 TTGTTT TTGTTT T 1 TTGTTT TTGTTT T 10546863 GTAAATTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (6 bp): TTGTTT Left flanking sequence: Indices 10546350 -- 10546849 AATATCTTGTTTGGTGAAGATATTGGAAAAAAGGCAAAAGCCGTTAAAAGTCATTAAAGGATTAA CTTATCAAGTACATTGAAGTTTTCTCTCTATTTAGTTTTGTGAGATGTCATGCCTTCACAGTGTG AAGTTTGAAGATGTTTGAATTGGTTGGCAAATTCGGATTTGGATGCGTTGTAGATTATGACTGGA TTAGACAAAGAATGGTGCGGTTGTTTTTATCGTAACAAAAAACAAATCCATAATTAAATCAAGGA GATTGCTATGGCAGTAATTGTGATTTATTAATATTTGGAAACAAATTGAGCTTTCTTTTTTCTAA GTGCAAGTGCAACATGCTGCTTACAAAAGAAGCACGATTGCTAAACAATACAGAAAATTTTTTCA ACTACCGTATGCATTAAAGGCGCATCACACATTTGGCTGGGGTCTCGCGACGACCAGTCCTTTCT TCAAAACACTCAAATTTTCATCGCTCTTTTTAAGTTTTTTTAAAA Right flanking sequence: Indices 10546863 -- 10547362 GTAAATTTAAATTTTATTAGCTTTGTGAAATTTTCTATTCAACATCTAAACAAAGTTAAAAAAAA AACTTGAAATTCAAAATTCTTACTTCTCTTGTGGATGCCTTTATTATTGCGATACATTCACTGTG TTCGTTTTAAATTTCCTTTTAAAAATGCAGTTTTAAAAGTGTTTCATTGTCATTTTATATTTTCC AGATGACTTGTGATGATTGGAACAGTTATATTCAAGTGAACATTTATGGAAAAACCATAGAAGGA CTTCAGCAGCAAGGAGTTGTGTTGGAATCTCTTTTGGTTAGTTCGATGATGAAATTTCATCTCTG GTGATACTTGAATCTGAATATGGTGTTTATCAATTTCAGAACAACGTCGGCTGCTCTAAAGTTTG GATCATGGAGGGCTCCGTCTGCACAAATCCTAGACCCGAAAGCTCTACACATTCTGAAGAAAGTA CAATCGAACCAGTTGTACCACTAAGTACAACTCTGGCCACTAACA Found at i:10546873 original size:6 final size:6 Alignment explanation
Indices: 10546864--10546876 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10546854 TTTTGTTTTG 10546864 TAAATT TAAATT T 1 TAAATT TAAATT T 10546877 TATTAGCTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (6 bp): TAAATT Left flanking sequence: Indices 10546364 -- 10546863 TGAAGATATTGGAAAAAAGGCAAAAGCCGTTAAAAGTCATTAAAGGATTAACTTATCAAGTACAT TGAAGTTTTCTCTCTATTTAGTTTTGTGAGATGTCATGCCTTCACAGTGTGAAGTTTGAAGATGT TTGAATTGGTTGGCAAATTCGGATTTGGATGCGTTGTAGATTATGACTGGATTAGACAAAGAATG GTGCGGTTGTTTTTATCGTAACAAAAAACAAATCCATAATTAAATCAAGGAGATTGCTATGGCAG TAATTGTGATTTATTAATATTTGGAAACAAATTGAGCTTTCTTTTTTCTAAGTGCAAGTGCAACA TGCTGCTTACAAAAGAAGCACGATTGCTAAACAATACAGAAAATTTTTTCAACTACCGTATGCAT TAAAGGCGCATCACACATTTGGCTGGGGTCTCGCGACGACCAGTCCTTTCTTCAAAACACTCAAA TTTTCATCGCTCTTTTTAAGTTTTTTTAAAATTGTTTTTGTTTTG Right flanking sequence: Indices 10546877 -- 10547376 TATTAGCTTTGTGAAATTTTCTATTCAACATCTAAACAAAGTTAAAAAAAAAACTTGAAATTCAA AATTCTTACTTCTCTTGTGGATGCCTTTATTATTGCGATACATTCACTGTGTTCGTTTTAAATTT CCTTTTAAAAATGCAGTTTTAAAAGTGTTTCATTGTCATTTTATATTTTCCAGATGACTTGTGAT GATTGGAACAGTTATATTCAAGTGAACATTTATGGAAAAACCATAGAAGGACTTCAGCAGCAAGG AGTTGTGTTGGAATCTCTTTTGGTTAGTTCGATGATGAAATTTCATCTCTGGTGATACTTGAATC TGAATATGGTGTTTATCAATTTCAGAACAACGTCGGCTGCTCTAAAGTTTGGATCATGGAGGGCT CCGTCTGCACAAATCCTAGACCCGAAAGCTCTACACATTCTGAAGAAAGTACAATCGAACCAGTT GTACCACTAAGTACAACTCTGGCCACTAACAAGCTTCCTCGATTT Found at i:10548734 original size:4 final size:4 Alignment explanation
Indices: 10548725--10548737 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 10548715 GCAAATCATC 10548725 GGTT GGTT GGTT G 1 GGTT GGTT GGTT G 10548738 AGTGGTAACG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.54, T:0.46 Consensus pattern (4 bp): GGTT Left flanking sequence: Indices 10548225 -- 10548724 TGCTATTCAATCTGATGGATTCTCATATGAACAACCTATTTGTGAATTTGGAGATAGTCAATTGT TTTTGTCAGCAAAAAGTCTTTGCACTGAGCCGAACAGTTCTATTGCTGAGGATGTGAAGCCGGTT TTGACAGTTTCGGATTCCGACATAACAGCTTCCAACAGGAATAATATCGATGATCATAATCGAGT CATAGAACTGTCAACTGAGGTATGATTTGAGTAATTTCCTTTATTTTTAATTTGTAAATCATCAC AACTGACAAGGGAAGTCTTTGAGGGGGTCCCTAGATTTGGGATTCTCATGTTGAAATTCCAATAG AAGAGTATTCCAGATGATCCCTCCAAAAAATTTAGCTGCCCAGGTTGGGTTTCAGCAAAGTTATG ACGTTTTGAAAATTCGGTCTGAAATCGGTTGATTTGTATACTAAATCAACGGTCGGCATCGGCCC GGGACACCATAGTTGTCACCAGGCGCGTGGTGTGAGCAAATCATC Right flanking sequence: Indices 10548738 -- 10549237 AGTGGTAACGAGATGGGTTCTGGTGGTGAAGGTTGTGGGTTCGATCCCTTGCGTTATAAAGCTTT TTTTAAAAGTTTTTACTGTATTTTAAAAACAGTAAAAAGTGTGATTGAAATTACTTTTACTGACT TTCTCCACCTTTTTGAGTTTCTTATAAACGTTTGCATCACATTTTCTCACATTTTTTGAATTAAA AAAATTTCAAAAAAATCAAAATTTTCATCATCAAAGTCATGAAAAAAAATAGAAATCTCAGATTT TCAGATAACTATAAAAAACCCACCGAAAGATTATTTTCATTATTAAACTCATGGTTAAAACGTAT TTCGCGATAAACTGGGCCGTGACCGACGGAAAGGGCCACTGGTGTAAACCGCCGTTTTTGTTCGA ATTTTTTTTTAGTAATTTCACCGTTTTTTTGTTGTTTTTACTTATTGAATTAAAGGTAAATGCCG TTCCGTGCTGATCTTATTGTTGGAGGACTGGTGGAAGAGTTTGGA Found at i:10553243 original size:6 final size:6 Alignment explanation
Indices: 10553232--10553245 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10553222 TTTCACCATT 10553232 TTTTTC TTTTTC TT 1 TTTTTC TTTTTC TT 10553246 CGATTTTTCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86 Consensus pattern (6 bp): TTTTTC Left flanking sequence: Indices 10552732 -- 10553231 AACTTTTTAGTTGACAAGTTTTTCATATTTAAGCTGCCTGCGGAGGTAGAACATTTTGGAAGTAC TGACTTTCTATGAACAAGCCAAATTGACTGTTGTATTTTTTTGCCCAGGAGTGCGATTGAGCTAT GAAAACTGTGGAAAATACTAAAATATACATTTCCTACACAAGTATTGCAGTATTGAAATTTTTTG GAAAAAAAATTTTTCCCAAAATTTTTTCATAAGGGGGGACCCTTATCAAAATTTTAAAATCAGTG GAAAATATTTTTAATTAAATTTTTATTGAACTTAACTTTTTTTCAATTATATGTTGGTTTCAATC ACAAATCACATTTACGACTCAAAGTGATTTTTTCTTTTCTACGACTTCAATATAAGAGCGAGAAA CCATTTCAAAAGAAGCTCCAAACGCAAATGGCAACGACACTCCGAAATAACGGTTGCGCGCCCTC TTTACCGTAAATCCTCCTCATTTTCGAAATTATTTTTTCACCATT Right flanking sequence: Indices 10553246 -- 10553745 CGATTTTTCATAGTTTTCTTCAGCAATTCTTTGATTTTTTTGGCAAAAATAATTATTTTCCGTAA ATATACTCGTGTTTCAGCATATCCGACGTTGAGGTACCGATTCATCCGCGGATCCGACGCGGAAT CCATAGAAATGGAGAGACTCGTCTCTGGAGTTTGGATGGGAGTGTGCTGCTGATTCTGAAAATTC GAGTTGATAAAATTTTGGGTTAAAAAATTAATGATTACATTGACAAATTGAGCACAAATTTCCGA CTTCCGGTCTTTAATTGTAGCATGGATCTCGACTTAATGGACGAATTCTCGGATCAGAGTCTAGC ATCAGGGCAATCAAACTGCGAAGATCTGTAGAAGTTCCAGCGAAGACAGTCAGATGGGACAGAAT AATGTGATCGACGATGCTCCACCACCAACACGCTCACGTGGACTGTGATATTTGTCAACTCGACG ATTATTCATCACGTAAGAAAAATAGTTGATACTTAATTAAAAACC Found at i:10553873 original size:5 final size:5 Alignment explanation
Indices: 10553863--10553877 Score: 30 Period size: 5 Copynumber: 3.0 Consensus size: 5 10553853 TTTTTTTCAA 10553863 ATTTT ATTTT ATTTT 1 ATTTT ATTTT ATTTT 10553878 TTTATAAAAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (5 bp): ATTTT Left flanking sequence: Indices 10553363 -- 10553862 TCCGACGCGGAATCCATAGAAATGGAGAGACTCGTCTCTGGAGTTTGGATGGGAGTGTGCTGCTG ATTCTGAAAATTCGAGTTGATAAAATTTTGGGTTAAAAAATTAATGATTACATTGACAAATTGAG CACAAATTTCCGACTTCCGGTCTTTAATTGTAGCATGGATCTCGACTTAATGGACGAATTCTCGG ATCAGAGTCTAGCATCAGGGCAATCAAACTGCGAAGATCTGTAGAAGTTCCAGCGAAGACAGTCA GATGGGACAGAATAATGTGATCGACGATGCTCCACCACCAACACGCTCACGTGGACTGTGATATT TGTCAACTCGACGATTATTCATCACGTAAGAAAAATAGTTGATACTTAATTAAAAACCATTTTTT GTTTTCAGCGACTTCAACAATCACCGACTCCTGCCGCCTCGTCGCCTCGGAACGTGTCATCTGCA TCGACAAACCCGTCCCCATCCGAATAATTTTCTATTTTTTTTCAA Right flanking sequence: Indices 10553878 -- 10554377 TTTATAAAATAAAAATTTTTATGAACTATCAATTGTTATTAAGGAACCGCAAATTTCAATATATG GCGAATAACGGGGTGCCAGCTAGCTGGGCATTCGGAGCGTCCTCATCATTTACCGGTCCGTTTTT CGCGAGTTCTTCATCGAATAGCGGCCCGCGCCTTCACCAAAGCCATGTACCGTTTTCGCGAAATA GCGGCCCGTCACCCGACGAATATTCGCATGACGCGGTTTACCTGTGCACTCAACCAACCAACCGA TGATTTGCTCACACCACGCGCCTGGTGACAACTATGGTGTCCCGGGCTGATGCCGACCGTTGATT TAGTATACAAATCAACCGATTTCAGACCGAATTTTCAAAACGTCATAACTTTGCTGAAACCCAAC CTGGGCAGCTAAATTTTTTGGAGGGATCATCTGGAATACTCTTCTATTGGAATTTCAACATGAGA ATCCCAAATCTAGGGACCCCCTCAAAGACTTCCCTTGTGAGGGAG Found at i:10554132 original size:4 final size:4 Alignment explanation
Indices: 10554123--10554135 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 10554113 CCTGTGCACT 10554123 CAAC CAAC CAAC C 1 CAAC CAAC CAAC C 10554136 GATGATTTGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00 Consensus pattern (4 bp): CAAC Left flanking sequence: Indices 10553623 -- 10554122 GATGGGACAGAATAATGTGATCGACGATGCTCCACCACCAACACGCTCACGTGGACTGTGATATT TGTCAACTCGACGATTATTCATCACGTAAGAAAAATAGTTGATACTTAATTAAAAACCATTTTTT GTTTTCAGCGACTTCAACAATCACCGACTCCTGCCGCCTCGTCGCCTCGGAACGTGTCATCTGCA TCGACAAACCCGTCCCCATCCGAATAATTTTCTATTTTTTTTCAAATTTTATTTTATTTTTTTAT AAAATAAAAATTTTTATGAACTATCAATTGTTATTAAGGAACCGCAAATTTCAATATATGGCGAA TAACGGGGTGCCAGCTAGCTGGGCATTCGGAGCGTCCTCATCATTTACCGGTCCGTTTTTCGCGA GTTCTTCATCGAATAGCGGCCCGCGCCTTCACCAAAGCCATGTACCGTTTTCGCGAAATAGCGGC CCGTCACCCGACGAATATTCGCATGACGCGGTTTACCTGTGCACT Right flanking sequence: Indices 10554136 -- 10554635 GATGATTTGCTCACACCACGCGCCTGGTGACAACTATGGTGTCCCGGGCTGATGCCGACCGTTGA TTTAGTATACAAATCAACCGATTTCAGACCGAATTTTCAAAACGTCATAACTTTGCTGAAACCCA ACCTGGGCAGCTAAATTTTTTGGAGGGATCATCTGGAATACTCTTCTATTGGAATTTCAACATGA GAATCCCAAATCTAGGGACCCCCTCAAAGACTTCCCTTGTGAGGGAGGTTTTCGTTTTTAATTAA AGATTTTGCAGCATAAGACAATGGGAGAGTTTCAATATAATTTCGATGATGAGGATACTGTGCTG ATCGGAAATTATGAAGAAGTTGGAACAGAAATTGATGAGGCAGATGAACAACATAATGAGGAGAA CAGTGAAGATGATGAAGAGGATGAGAGCCCGATTCCTTCAAAAAAGCGAGTTTCGTTTGCTGTTC CACTTGTTCAAAGTCGCTCCAAACAAAAGGATGAAATGAATAAAG Found at i:10555132 original size:5 final size:5 Alignment explanation
Indices: 10555122--10555134 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10555112 TTGCATTTCT 10555122 CAAGA CAAGA CAA 1 CAAGA CAAGA CAA 10555135 AGGATCTAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.62, C:0.23, G:0.15, T:0.00 Consensus pattern (5 bp): CAAGA Left flanking sequence: Indices 10554622 -- 10555121 TGAAATGAATAAAGTTCATATCATTAAATGCCATTTTGATGTGAGTTTCTGAGAACAAATAAATA TGAAAAATCAACATTTTCTTCCCGTTTAGAAGTGTAACAAATCGTACAATTGGCGCAAAAAATAC GGTAAACTACGTCTTGTGGATCACGCCTTCACTCATGTCCCTCACTTGAAAATGAAGTGCAATTT TTGTGATTACATGTGCAAAGGAATTAGAAATATTAGGCTTCATCACAAGAAAAGTCATCCTGATG AACAATTAACGGGATTTGGTATCAAAAGGTACTTTGAGATTCCAAAAATTAATGTATTTGTCTTA TTTTTCAGTGTGGTCCGTACTTCGAAAAAAGGAAAAGACTTGGCGAAGGTTTGGGATGAATGTTT TAAAAGTAAGTGAAGTATATATGAAAAAGTTATAATTTAAAATGTTAACTTTCTAGAAAATCGTG TCCTTCAACATGGATCTGGTACCGATTCAAACCTATTGCATTTCT Right flanking sequence: Indices 10555135 -- 10555634 AGGATCTAAAAGATCACAGAAATCTATGGATTCTGGTGCAAAACAAAAATTGGATGAAGCTAGGG ACGAGGATGTGAAGCCATTTTAGTGAGCATTAAGTTTAAAACATTCCGCGTCATTTTTTTATTCA GTTTCTTCAGAATTCGATGAGCTTCGTCGTCGGGCCGTCTGCTTTTTGTAAATTGTGTCTCATGT GTTATTATCGTTGATGTTATATTATGTTGTTTTTAATGCATTCTATGCGACTTTTCTTTTAATAA TTCTGAAGGTCTTCATTTTATCACCGCTTTAATTTATAATTACGACATGTTGTTTCACTCAAGTT TGAAAATATTTCTTGCTAAGACCTACTTTAAATGTTAATCGCCGTTTCATTTGGAACTTTCTTGC TGCTGCCCATTTTCGATATAACTTTTTGAAAGTGGAGCACTCCAGATAGACTTAAAATTCTATTA ATTTAAATATGTTCTTACAAGAATTTTCTAGATGACCTGCGATGA Found at i:10558298 original size:6 final size:6 Alignment explanation
Indices: 10558287--10558299 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10558277 GTAGTTTTTA 10558287 TAAATG TAAATG T 1 TAAATG TAAATG T 10558300 TAAAAATTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38 Consensus pattern (6 bp): TAAATG Left flanking sequence: Indices 10557787 -- 10558286 AACCGTTTGAAAACTGATAAACCCCTCTTGTAGCATTCCTCTTCAAAATACCAAATTCTCAGATG TATGGAATAAATGTTTTGGAGGTACATTATTCTAATTATTTAGAGATTACATGCTATTCAAATTC CAGATCAACTGAAAACGATCGGACCCGTTAGAAAAGCTGAACGAACTCCTCGTCGAAAACTCAAA AGTATTCGCTTATAGAAAACCAAAATCTCTTCTAGAGTACAAGCGGAAGATGTGAAGATGTTTTT GTAAGCTCCATAACTGCTCATATCACTAATTTCAAATCCAGTTTTAACAGAATTTAATGAGCATC ACGACGACACCCTCATGTACAATTATTATCATGTTCTAATTATTTTGTAGTTTTACAGAAATAAA ATACAGTGTTTTTTCAGTTAATTGTGTTTTTTTTTTTTGGATTAATCGTTCTTTTGACGAATCAA ACATGATATTTTCACAATTATTTAGAGTCAAAAATGTAGTTTTTA Right flanking sequence: Indices 10558300 -- 10558799 TAAAAATTATTTCAAAAAAAGAAATGCTGTATGCAACAAAATTTAAAAACTAATTGTAAGTAAAT ACAGTATTATATTTCTTCCTACCGTATACTTTCAAGGCACATTATACTTTTGTCAAAGGTCTCAC AACGATCAGGTCTTTCTTCATTTCTAGATTTGTCGGAAGTATTTTGTTTCGTTTCCGCGTTTTAG TTCCTGTTCTTTTTGTATTTTAACCAGTAGATGAATAAAGACTGTTTTAAGCCTGATATTTATCA TCATGATAACAAACTTTCAATTTCTTCACTATTCATTGCGATGAATTTATGTAAATAACGGTTGT CGATACGCCTGAGAACATGTTTTTGGACATTTTTTTAATTCTTGATGTTTTCATGGTATATTTTT CAGATGACCTGCGATGACTGGAACAGTTTTATTCAAGTGAACATTTATGGGAAAACTATAGAAGG TCTTCAGCAACAGGGAGTTGTGTTGGAATCTCTTTTGGTTGGTTT Found at i:10558835 original size:6 final size:6 Alignment explanation
Indices: 10558824--10558837 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10558814 ATCTTTTGCT 10558824 ATTTGA ATTTGA AT 1 ATTTGA ATTTGA AT 10558838 AGTAGTTATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50 Consensus pattern (6 bp): ATTTGA Left flanking sequence: Indices 10558324 -- 10558823 TGCTGTATGCAACAAAATTTAAAAACTAATTGTAAGTAAATACAGTATTATATTTCTTCCTACCG TATACTTTCAAGGCACATTATACTTTTGTCAAAGGTCTCACAACGATCAGGTCTTTCTTCATTTC TAGATTTGTCGGAAGTATTTTGTTTCGTTTCCGCGTTTTAGTTCCTGTTCTTTTTGTATTTTAAC CAGTAGATGAATAAAGACTGTTTTAAGCCTGATATTTATCATCATGATAACAAACTTTCAATTTC TTCACTATTCATTGCGATGAATTTATGTAAATAACGGTTGTCGATACGCCTGAGAACATGTTTTT GGACATTTTTTTAATTCTTGATGTTTTCATGGTATATTTTTCAGATGACCTGCGATGACTGGAAC AGTTTTATTCAAGTGAACATTTATGGGAAAACTATAGAAGGTCTTCAGCAACAGGGAGTTGTGTT GGAATCTCTTTTGGTTGGTTTGATAAGGAAATTTTATCTTTTGCT Right flanking sequence: Indices 10558838 -- 10559337 AGTAGTTATTATTTCAGAACAATATCGGTTGCTCCAAGCTTTGGATTGTGGAGGGCTCAATGTAC ACGAGCTTAACTAATGAAAGCTCTACATATTCTGAAAGTACAATCGAACCAGTTGTTCCACTAAG TACAACTTTGGCCACTAACAAGCTTCCTCGATTTTCAACTCCTGCTGTCGGCCATTCAAAATATA ATTCTGCAAAAAATTTCACATTGAATTTGGCTGAGAAGCTATCGGAGATTCTATCGGATGACGAT AAAACTGATAAATGCCTGGAGAACTCTTATCAATCCGAAACTTCCAGGGAAGACGTGATTCAGGA TTTGCTCGAAGAAATGGTACAAACTGTTGCCGATGTTGATCAAGCTCCGATTCTTTTGAGCACAA CTCTCGCAAACATTGGTGTTCCCCGCTTTTCAACTCCCATCAAACCACAAAATGGTTTGGATCGA AAGTTTACAATGAACATGACAGAAAGAATTTCCGAAATTGATTCG Found at i:10560495 original size:6 final size:6 Alignment explanation
Indices: 10560484--10560496 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10560474 GCAATGACTC 10560484 ATGAAA ATGAAA A 1 ATGAAA ATGAAA A 10560497 GTGTCTCGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15 Consensus pattern (6 bp): ATGAAA Left flanking sequence: Indices 10559984 -- 10560483 CTGTCAACTGAGGTAGGATTGAAGAGATTTCCTTTATTTCTAATTTGTAAATTGTCGCAACATGA TGAGATTTTCGTTTTTAATTGAATATTTTGCAGCATAATACCATGGGAGAGTTTCAATATGATTT CGATGATGAGGATACTGTGCTGATCGGAAATTATGAAGAAGTTGGAACAGAAATTGATGAGGCAG AACAGCAGAATGAGGAAAACAGTGAAGATGATGAAGAGGATGAGAGCCCGATTCCTTCGACGAAA AAAGTTTCGTTTGCTGTTCCAGTTGTCCAACGTCTTAACAAGCGAAACGAGCAAATGAATAAAAA TCATATTATTAAATGTAATTTCGAAGTAAGTTCCGATCTGAGCCATTTCTTAGGGAGGATGTTCA GGAAATATGACAACATTTAAAAAAAAGAAGCTATTTTCAGGGTTGTAAGCAAATTCTCTCGTGGA AACTTCGATACGGCAAACAACGACTTCTGGATCATGCAATGACTC Right flanking sequence: Indices 10560497 -- 10560996 GTGTCTCGTTTGTCGCACATGTGAATACTCTTGCAGTACACATCCCCAAATGAAGTATCACTATC AAAAAATGCATCCAGAAGTGAGGTGTGATGGGTTTAATATTCAGAAGTAAGCCGTCAATTGTTCA ATAAATTATATAAAACACGATTATTTCAGAGTGTTCAATATCGAATTTGATGAAGTGGCGATTTT CGATCTTTTCCAAAAGTGCTTCGGAGGTATTAGACAGATATGAAATATTGATATTCAATGTGTAA TTACAGCACATTCTTCCATCATCGGAAATATTGGGAAACCGCGGAGATATAAAAAATGTAAAAAC TCGCTGAAAAATACTCCAGAAGTCGACAATGAGAATGTAGATAAAGACTCTCCAGGACCATCACA CGATCTTTTCTAGTAGGTTTTTCCATATACTTTATTTTATTCTGAAGTTTAGTTTTCGCAGAATT CGCTGATCGTCTTTCGCTACGACTCTGCACAATGTGTTATTTGTC Found at i:10561048 original size:5 final size:5 Alignment explanation
Indices: 10561038--10561068 Score: 37 Period size: 5 Copynumber: 5.8 Consensus size: 5 10561028 AATAGTTTCA * 10561038 TTGTT TTGTT TTGTT TTTTGT TTGTT ATTGT 1 TTGTT TTGTT TTGTT TTGT-T TTGTT -TTGT 10561069 CGAGATAAAC Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 5 14 0.64 6 8 0.36 ACGTcount: A:0.03, C:0.00, G:0.19, T:0.77 Consensus pattern (5 bp): TTGTT Left flanking sequence: Indices 10560538 -- 10561037 ATCCCCAAATGAAGTATCACTATCAAAAAATGCATCCAGAAGTGAGGTGTGATGGGTTTAATATT CAGAAGTAAGCCGTCAATTGTTCAATAAATTATATAAAACACGATTATTTCAGAGTGTTCAATAT CGAATTTGATGAAGTGGCGATTTTCGATCTTTTCCAAAAGTGCTTCGGAGGTATTAGACAGATAT GAAATATTGATATTCAATGTGTAATTACAGCACATTCTTCCATCATCGGAAATATTGGGAAACCG CGGAGATATAAAAAATGTAAAAACTCGCTGAAAAATACTCCAGAAGTCGACAATGAGAATGTAGA TAAAGACTCTCCAGGACCATCACACGATCTTTTCTAGTAGGTTTTTCCATATACTTTATTTTATT CTGAAGTTTAGTTTTCGCAGAATTCGCTGATCGTCTTTCGCTACGACTCTGCACAATGTGTTATT TGTCAACTCATGTAACATTTGCAATGTTTTTTAGTAATAGTTTCA Right flanking sequence: Indices 10561069 -- 10561568 CGAGATAAACTTATAAAATATGTTTTTCATTAAAAAATAACTTGTTTTGTAAATTTTTTGTCCGC GAGTTTTTCATCTATAATACCTTTTTTGACTATTAAATTCAGTTCTGTATATATGTGATATCACT AAATTTTAATATACCTTCTTAAAGGCACACGGAGTTATTCAGATGGGCATCGAGGCGCAAAAAGT TTATGGTACTTTTCTTTAACTTTTTCGGCTGCTTCATTCCTTTTTTAAAAACATTACTTCGTTTT TTGCTAATTTTCTTATTAACTTTGCATTTTTCTGTTAAATTTTTTTAATATCCTTCTTCGTGTAA AACATGCATTTTTGATCATAAATGTTAATTGTACTATGGAAAAAACTGATCTAAAACAATTTTAA ACAGGAAAATGAGTAGAAAACGACAAACTTCGCTAAAAACTAAGTGATTTTTTCTTGAAAATACA AGAAAAGCGTAGCAGCAAAAAATTGAAAAAAAACCTAGGTTTAAA Found at i:10561063 original size:4 final size:4 Alignment explanation
Indices: 10561042--10561063 Score: 28 Period size: 4 Copynumber: 5.5 Consensus size: 4 10561032 GTTTCATTGT 10561042 TTTG TTTTG TTT- TTTG TTTG TT 1 TTTG -TTTG TTTG TTTG TTTG TT 10561064 ATTGTCGAGA Statistics Matches: 16, Mismatches: 0, Indels: 3 0.84 0.00 0.16 Matches are distributed among these distances: 3 3 0.19 4 9 0.56 5 4 0.25 ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82 Consensus pattern (4 bp): TTTG Left flanking sequence: Indices 10560542 -- 10561041 CCAAATGAAGTATCACTATCAAAAAATGCATCCAGAAGTGAGGTGTGATGGGTTTAATATTCAGA AGTAAGCCGTCAATTGTTCAATAAATTATATAAAACACGATTATTTCAGAGTGTTCAATATCGAA TTTGATGAAGTGGCGATTTTCGATCTTTTCCAAAAGTGCTTCGGAGGTATTAGACAGATATGAAA TATTGATATTCAATGTGTAATTACAGCACATTCTTCCATCATCGGAAATATTGGGAAACCGCGGA GATATAAAAAATGTAAAAACTCGCTGAAAAATACTCCAGAAGTCGACAATGAGAATGTAGATAAA GACTCTCCAGGACCATCACACGATCTTTTCTAGTAGGTTTTTCCATATACTTTATTTTATTCTGA AGTTTAGTTTTCGCAGAATTCGCTGATCGTCTTTCGCTACGACTCTGCACAATGTGTTATTTGTC AACTCATGTAACATTTGCAATGTTTTTTAGTAATAGTTTCATTGT Right flanking sequence: Indices 10561064 -- 10561563 ATTGTCGAGATAAACTTATAAAATATGTTTTTCATTAAAAAATAACTTGTTTTGTAAATTTTTTG TCCGCGAGTTTTTCATCTATAATACCTTTTTTGACTATTAAATTCAGTTCTGTATATATGTGATA TCACTAAATTTTAATATACCTTCTTAAAGGCACACGGAGTTATTCAGATGGGCATCGAGGCGCAA AAAGTTTATGGTACTTTTCTTTAACTTTTTCGGCTGCTTCATTCCTTTTTTAAAAACATTACTTC GTTTTTTGCTAATTTTCTTATTAACTTTGCATTTTTCTGTTAAATTTTTTTAATATCCTTCTTCG TGTAAAACATGCATTTTTGATCATAAATGTTAATTGTACTATGGAAAAAACTGATCTAAAACAAT TTTAAACAGGAAAATGAGTAGAAAACGACAAACTTCGCTAAAAACTAAGTGATTTTTTCTTGAAA ATACAAGAAAAGCGTAGCAGCAAAAAATTGAAAAAAAACCTAGGT Found at i:10563060 original size:6 final size:6 Alignment explanation
Indices: 10563049--10563065 Score: 27 Period size: 6 Copynumber: 3.0 Consensus size: 6 10563039 AAGATCAGTT 10563049 GAATGA GAATGA -AATGA 1 GAATGA GAATGA GAATGA 10563066 AATCTCCAGA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 5 5 0.45 6 6 0.55 ACGTcount: A:0.53, C:0.00, G:0.29, T:0.18 Consensus pattern (6 bp): GAATGA Left flanking sequence: Indices 10562549 -- 10563048 TAGAGATCGATTTTAGTTTAATTCAAAAAAGTGTGCGCCTTTAAAAAGTACTGTGGTTCCCAGAT TTTTTTTGTTGAATCATGTATATTAAAATACATCAAGTTTTGAAGAAACGGAGGAAAAACTAGGA AAAATTAATGCGGATTCTGCAAAAACAAAGTTAGTAACTACAGTACTCCTTAAAGGTGCATTCTT TTGAACCTGAAAAAAAACGGTTGCCGAGAGACCGGGTACCGTTAGTCACAAGAATTTAAATTTCG TTTTTTTTTCAGTATTAATTCGCCGATTGTATCATCTGGACAGTCGGAGTTTCTCCAAGACGGTG TAGACAACGATGGAAATATTGATGATTATGAAGAGTATCAGTCATTACCACCGAATGATGATGTT ATTATGAATGAAACAGAATTGATGGATGTTGATCGAACCACAGTGATGACTCCATTACGAAGTCC TACATTTTTCGATTATCACAACGAATCCGGTGATGAAGATCAGTT Right flanking sequence: Indices 10563066 -- 10563565 AATCTCCAGACAGCAAAAACGACGAGATTAATAAAGATGAAATCCACAATATTCAATGTCATTTC CCGGTGAGTTAAATTTTCTGTTTGTTTTTTTCCATTACCTGGATTGTTGCAGAACTGCAATCGAG CAATTGCGTGGAAGAGGAAATATGGAAAACTTCGTCTTATCGATCACGCATTGGTCCATTGCGAT AAAAACTTTCTGAAATGCAAAAAATGCAAGCACACTTGTCATACAATCCGTCAAATGCGTTATCA CTATCGCATTTTTCACTCAACATCAAAAATGGAAGGCTTCGGAGTGTCTGGGTAAACTTTCTGAA ATTAAAATATTTCAACAAATTGCAAATTTTTCAGCTTGCCAACCAAAAATAAAGGATTCCAAAAA ATTATGAATGCTTGTTTCGCAGGTAAGTATCAAGTTAAAAATTATAGTTTTACATCCATATGGTT TTTGATTTTTTAGATTTGCTCTAATTTTTAAATTTTTAAAATCTT Found at i:10563066 original size:5 final size:5 Alignment explanation
Indices: 10563050--10563068 Score: 29 Period size: 5 Copynumber: 3.6 Consensus size: 5 10563040 AGATCAGTTG 10563050 AATGA GAATGA AATGA AAT 1 AATGA -AATGA AATGA AAT 10563069 CTCCAGACAG Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 5 8 0.62 6 5 0.38 ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21 Consensus pattern (5 bp): AATGA Left flanking sequence: Indices 10562550 -- 10563049 AGAGATCGATTTTAGTTTAATTCAAAAAAGTGTGCGCCTTTAAAAAGTACTGTGGTTCCCAGATT TTTTTTGTTGAATCATGTATATTAAAATACATCAAGTTTTGAAGAAACGGAGGAAAAACTAGGAA AAATTAATGCGGATTCTGCAAAAACAAAGTTAGTAACTACAGTACTCCTTAAAGGTGCATTCTTT TGAACCTGAAAAAAAACGGTTGCCGAGAGACCGGGTACCGTTAGTCACAAGAATTTAAATTTCGT TTTTTTTTCAGTATTAATTCGCCGATTGTATCATCTGGACAGTCGGAGTTTCTCCAAGACGGTGT AGACAACGATGGAAATATTGATGATTATGAAGAGTATCAGTCATTACCACCGAATGATGATGTTA TTATGAATGAAACAGAATTGATGGATGTTGATCGAACCACAGTGATGACTCCATTACGAAGTCCT ACATTTTTCGATTATCACAACGAATCCGGTGATGAAGATCAGTTG Right flanking sequence: Indices 10563069 -- 10563568 CTCCAGACAGCAAAAACGACGAGATTAATAAAGATGAAATCCACAATATTCAATGTCATTTCCCG GTGAGTTAAATTTTCTGTTTGTTTTTTTCCATTACCTGGATTGTTGCAGAACTGCAATCGAGCAA TTGCGTGGAAGAGGAAATATGGAAAACTTCGTCTTATCGATCACGCATTGGTCCATTGCGATAAA AACTTTCTGAAATGCAAAAAATGCAAGCACACTTGTCATACAATCCGTCAAATGCGTTATCACTA TCGCATTTTTCACTCAACATCAAAAATGGAAGGCTTCGGAGTGTCTGGGTAAACTTTCTGAAATT AAAATATTTCAACAAATTGCAAATTTTTCAGCTTGCCAACCAAAAATAAAGGATTCCAAAAAATT ATGAATGCTTGTTTCGCAGGTAAGTATCAAGTTAAAAATTATAGTTTTACATCCATATGGTTTTT GATTTTTTAGATTTGCTCTAATTTTTAAATTTTTAAAATCTTCTT Found at i:10564506 original size:6 final size:6 Alignment explanation
Indices: 10564489--10564509 Score: 33 Period size: 6 Copynumber: 3.3 Consensus size: 6 10564479 CATTCTATGA 10564489 AATTGCG AATTGG AATTGG AA 1 AATTG-G AATTGG AATTGG AA 10564510 ACAATTTTAA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 6 9 0.64 7 5 0.36 ACGTcount: A:0.38, C:0.05, G:0.29, T:0.29 Consensus pattern (6 bp): AATTGG Left flanking sequence: Indices 10563989 -- 10564488 TTAAGATCTGGCGCTTCAAATTGTTTAAAATGATATAAATCTCTACAATCAGGTAATACAAGGGT TAATGAATAAAATTCTTTCAATGCTGTTTGATGTTCTCACAGATTCCTCATCGTACTTTTACGAC AAATTCGGCGCCTAAAGCGTCACGATACCCATAAAAAGACACACCGGACCTATAAAAACTTCTTC CTCCACCACTTCTTTTTTTCGATACGAGACGCGCTCATAAAAACGGATATTCATCATTATATACA CAGAGATGAAGCAATTTTTTACCTTCTCTTTTTTTCCATTATTTACCGGTCTTATTTTTTAATGG AAAAGTTCCCCCTCTTCGGTCAACTATTTCGATAATCGCTTCATTTATTATAATTGGAGTGAGCG TAGTGAGGCTGTTGCGGTTCAATTATTATGAGCGACCGGCGTGAAAATGGATAGGAATTTATGAT GAGTTTCATGTCGGCTCTTTGCAAAATTTGCGTTGCATTCTATGA Right flanking sequence: Indices 10564510 -- 10565009 ACAATTTTAAATGACCTTTTGATGTTATTCAAATACTATCCCTTCTAAGAATTTTTCGGCTGACT CCCCGACAACTATGTGCCAAATTTGTCAAAACATATTAACTTGTTCAGAAGTTGTCAAAATTAGG CAAAGGTTAGGTAGGTACTTGGATTAAGCAAACCCAAGTTTAAGCTGATTGTAAGTTTATAATTT CAGAATTAAAGATTTTATTAACTGTGAAAGTTTGAAAGTTTCAGATCCATCCAAAATAATAATTA TTTTTGGAGTTGATTTCAAGCATACTTCTACAAAAATTTTTCATGTTATGTGATCATGTAAAGAT GATTTCCAAAACTTTCAATCCATTACCCGATATTTACACTATCTTACTGTACCGTACTTCTAAAT CATTAATGAGATTAGAATACGTTATTCAGATAGATGTTTGGAAACTGTTTAGCTAAAAATCTTAA TTTATAAGCGATTACTATTTACAAATTTACAAAATATGTCTAAAT Found at i:10566025 original size:4 final size:4 Alignment explanation
Indices: 10566016--10566028 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 10566006 CTTCGAAGCG 10566016 CTTA CTTA CTTA C 1 CTTA CTTA CTTA C 10566029 CACCTCTTCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46 Consensus pattern (4 bp): CTTA Left flanking sequence: Indices 10565516 -- 10566015 CAAGGATCTTTGAAAATAATTTATTATGGAATAGGAAATGTTAAAATCACTCTAGCTTACAAGAT AAGTATAGGTAATACAAAAAATATTTTCTGTGTTAAGATTTTACTATAGTTACAATAAACAAAGC GGGATATTTCCTTGATTATTATGTATCTCCGTGAGTGATAATATTAGTGTATAACTTTTAGTTAT CATATATAACTTGGGAAAAATATTTAGCAATAGAATCGGAGCAGAAACTTCACCCTAAACATTAA CTATGAGTCTGATAAAAATTTGAAGCATCAGTCAAATCGAATTTTACATCCATCTTCCTTCAATT TTGTTGTTCTTTTTCTTCGTTTCTATTAATCATCCCTTTCTTGTCCTTCTTCAGTTGGTATTCTT CATTTTTAGTGAGAAGTCACTGCTAACATTTCCAGCTGGTTACATCTTTCACACTCTCTTCTTCC AGTTTTTATTCTCTTATTTATTCCATATATTTCTGCTTCGAAGCG Right flanking sequence: Indices 10566029 -- 10566528 CACCTCTTCATTTCACCAGTAGAGAGAAAAAAAGGGTCGACCCGACCTTCGCTCCGTTTTTTTTT CGACATTTTCTCCTCAATTTTCCTTTTTCTCAAAATTGGTCTTCGAGGATAATAAACTTTGTCCG GCGCTGTGTGTATTCTGCGTCTCGCTTATAATTTGCATGATGATTGCTATACCATATTTCACCTG AAGGCACACTTTGGGAACGAACGACTACCTGCCGAATGGCGCCCATATGTCTCCCTTAATAAGTG AGAAGAGAGTATCTAGGAATAGGAGAGTACTAGAGATATTAAATTAGGGGATCAGAAGGTGCTGC TGCTCCAGATGCCCTTGCGCCACACAAGAATAACATCACTTACATTATCGTCAAAGGAGAAATTG TTTAAAATTACCAAAATATATTTTTCATCATCAGAAGCCAATGTGTATTTTTCTAGGACTTCAGT ACTCCGAAAAAACTTATGATTTTGAAACAATTTCCCCCTTCAGGG Found at i:10568597 original size:6 final size:6 Alignment explanation
Indices: 10568586--10568599 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10568576 AACTTTGTTG 10568586 TTTTTA TTTTTA TT 1 TTTTTA TTTTTA TT 10568600 CCTGACAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (6 bp): TTTTTA Left flanking sequence: Indices 10568086 -- 10568585 ACATTTCATTTTGGAAAAAACCCACCCGCCGCGCGCCAGGTGACAGCTCAATGGAGTAGGCAGGT GGCCGGAGGAGGCAAGAAGTGGAACTGTGATAACAAATGGATGGTTTTCAAGGACATGAATTGAA ATTCCTTTCGACTGTTTTTACGTTTCAAATTAACTTTTGTATGTTAGTCTTTTAATCTGGCTAAA GACAGTTTGAGATTGGTATTGGGTTTCCTTGGTAGATCGGCAAATGTTCAAGCGATGTTGCTTGT CTGTCTATGTTCGTGCCTACCGTAGATTCAAACCTTTATACTCTTCTAACTTTTATTTGTTTATT GAAAGTTGGGAATTTGAATATTTTTGTTGGTAAATTGTAATATATTCTGATACTGATAGAATACC ATATTCCCTTCATTTCCCTTACAGCTCCTCTCTTCTCTCTTCTGATCCTCTCGATGCACTATGTG TCAAAATTCGCTTCAGACTAACTTTTATAGCTAACAACTTTGTTG Right flanking sequence: Indices 10568600 -- 10569099 CCTGACAAAACATTTAAAATCAATTTTTCTAAAATAGGTAAAATAAATTTAGACATTCCCAAAAC ACCGATTAAATAATGGAGAAGAATGTACTTTTATTTTTTTGATCGAGACTGACAAAATACCGAAT TCATAATCTCAGCTCTAACTGGCAATGGTCTTGAATGGTCTAGGAAATTAAAACTGGCGCTATTG TATAAGTCACTTAATTTCTGTTGTCCACTATTTTATGTCACAGCCGAAGTAGACCATATAATCAG GAATCTTTCCTTCTTCAAATTGTTGACATGCGAGTGTTACCGATTACACGCATGGATCGGTTTCT GCCCTTTTCTTGACAGTGGAAGATGAACAAAAATTAGCCTATCGGTGTGCAATCAATCCGGTCAC CTATCCTGACCTCTCTCTTCTTGTACATTATGACAAATAACAGTAGGGAGATAGATTGGTGGTTA CGTTTGCTTAAGATTGAGTGACTCTGTGTTGCGACGGGGATCAGG Found at i:10569662 original size:4 final size:4 Alignment explanation
Indices: 10569653--10569665 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 10569643 GGCACAAAAA 10569653 TGCC TGCC TGCC T 1 TGCC TGCC TGCC T 10569666 ACATGCGTGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31 Consensus pattern (4 bp): TGCC Left flanking sequence: Indices 10569153 -- 10569652 GAGATTAGTCATGTTGCCAGTCAAAGCTACTACTTTTTTGACTAATATGAACTAACAGAATGAGC AGATAAAGTGAATGGTGGAACATCATCGGGAATAGCAGCCACGAGAAAGTTAGAAGTTGATGTGA AATAGTATCTACATAAGAATACTTGAAAAACTTTGCTGAAGACTGTTATTATTAACCAGCCGTGG ACCGCACCTTCGGCGCGGCCCCGACTTCTGGGGCTGAAAATTAATTTTTTATGAAACTACCGTAA CCCTACAGTATTCCTACCGTACCACTATTGTACCACTACAGTACCCCGACTATATCCCTACACTA ACCTTAACTCACTATCCCTCCAGAAGCCAAAACTTCACAGACTACAAAGACTACATAGACTACAA ACTATGTACACACAGAATAAGCGCTTTATATATAGTAAATGATATTTGAGGATAACCGTATTATT GGCATAGTTTCGGAATAGGATTATTGACCTACGTAGGCACAAAAA Right flanking sequence: Indices 10569666 -- 10570165 ACATGCGTGTACACGGCCAAAGTACGCCTGAACTTCATTTTTTTTAATTTGTAAATTAAATCATC AAATATTTTTTGGAATGAACCATATAGCAACTCGAAATTCTCCTCCCTACCAAGATTGAGAGTTA AAAATTCACTCCAACGGTCAGACCACAGGCGATAGGTAGGTATGTAGGCAGGTATGAACTAGCAT ACTGTTGTCTTCAAATTGTCAATTGTTTTTCTTTGTTTTTCAATTGTTTTTGTTCGAGATCAATT GATTTAACAAATTTTGAAAACATTTAATTCAACCTAATATGTGAAATTTTCAAGTGCCTTTGTTG GCCACCATTTACTGTTTACTAATAAGCTTCTCCTATGAGTATGCCTTTTAATTATTTTTCCAATA CTTTACCTCATCATCGTCTTCCTTATTACCCATCCTCCTGGCTCCTCCCACTTCTTCTAACTAAC GGATCGCGCATTCCCTCGACGATCTCGCGGGTTGTCTTATTGCGT Found at i:10570281 original size:5 final size:5 Alignment explanation
Indices: 10570271--10570283 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10570261 GAAAAATGCA 10570271 AACGG AACGG AAC 1 AACGG AACGG AAC 10570284 AGAGGGATAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.46, C:0.23, G:0.31, T:0.00 Consensus pattern (5 bp): AACGG Left flanking sequence: Indices 10569771 -- 10570270 TCCTCCCTACCAAGATTGAGAGTTAAAAATTCACTCCAACGGTCAGACCACAGGCGATAGGTAGG TATGTAGGCAGGTATGAACTAGCATACTGTTGTCTTCAAATTGTCAATTGTTTTTCTTTGTTTTT CAATTGTTTTTGTTCGAGATCAATTGATTTAACAAATTTTGAAAACATTTAATTCAACCTAATAT GTGAAATTTTCAAGTGCCTTTGTTGGCCACCATTTACTGTTTACTAATAAGCTTCTCCTATGAGT ATGCCTTTTAATTATTTTTCCAATACTTTACCTCATCATCGTCTTCCTTATTACCCATCCTCCTG GCTCCTCCCACTTCTTCTAACTAACGGATCGCGCATTCCCTCGACGATCTCGCGGGTTGTCTTAT TGCGTAACCCGAACCTTATCATAACTCTCTCTTCTTTATTTTCTTTCTTCTCACCCAAAAAAAGA AGACTCACTCCACCATCACCCGGTGACTGACGCGGGAAAAATGCA Right flanking sequence: Indices 10570284 -- 10570783 AGAGGGATATCATTAACTTGCCCCCTTCTTCTCCTATTAACTGCAGTGTTATCACCTTCCATCCA CATATCCCTTTTCTCCTTTATCCAAATGTCCATTATCCTCAATTTGAATCACTTCTTTGTTTTTC TGATTTTCCTGGTTTTTTTTGTTGGTTTTGTTAAAATTATCGCAAATTTCCAAGTAGAAAGACAA TTTGGAAATGTGAAAACTTCGTTAATCATTATTCAGTGGTATTAGAGCAAAATATCTTTTTATTA GAAGTAATTAATGTTCGGCAAAGAAAAGCACCTGTAGCACTAAAAAGTTTTAGACTGCACGGCCC CGGTAAAGAATCTACCCAAACTTGGTGTGATTGCAGTTTTTCCTATGCATTTTGAGCCTTAAATT TCTAAAATTTCAAAAAAAAATTGATTTTCCTAATTCTCAGTGTAAAATACACCATAATTATATAA CTGCAAATATAATGACAATCAACTCTAAAAAGTTCTCAAAAAAAC Found at i:10573114 original size:6 final size:6 Alignment explanation
Indices: 10573103--10573118 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 10573093 TCCCGGGTAA 10573103 AGAAAC AGAAAC AGAA 1 AGAAAC AGAAAC AGAA 10573119 GCCCGTTGCC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.69, C:0.12, G:0.19, T:0.00 Consensus pattern (6 bp): AGAAAC Left flanking sequence: Indices 10572603 -- 10573102 CATCACATTTGTGTCAAACTACGCTTGTTTCGCTATGTTTCTTCTTAGATTACATAGATTCTCTC ACAACTTGCAACTCATCAATTCTCCCCTCACGTCAATTGATTGTTCTTGTGGCAAATTACATTGT TTTTAGAGCCTCGATGACATCGAGCAGGTGGCCAAAAGTTTTGAGAGAGCAAGACGAGTTTTTAC ACGAAACTTTGAACATTTTTTTTCAATTTTTTTCGAATTAAAAAAAAAATGTATACGGTTTCAAG ATTAAAACATTTAAAAAGGAAAACCTTACCGTTTAATTAAATTCCTCTCTTGCCAACTGCATGAC AGCTCATAACTATACTTCATCCAACTATACGTAGCACAGAAAAGACAAAGCGAACCTATTTATTT CTTTATTTCTATTCTCATTTCCCGTCAAAAGCCAGTAGCCATTTCATATCCTCCACATCCTTTCA TCACCATCAATCTTTTCCTCACTTGGCGACGTTTTTCCCGGGTAA Right flanking sequence: Indices 10573119 -- 10573618 GCCCGTTGCCATTCAGAAGTCGTCAAAAAACAGTTTTGATTCGATTACGGTAATCGTTCGCCACT GCTTTTTGTCTACTATGAGAACTATTCAGCTTGTGTGTATTCTATGTATGTGTGGTTGAAATGAA CGAAATTTTAATTGGATACGGATTTCGATTGACAGCCAGAAAGCAGCAGACAGCAGCAGCGCCCT CCCGTCATCATCCGGCATTTCGAATGCCATTGTTTGACGAACACAGTGTTGGAGCAAGAAGTATC CTTTCTTGTTTCTACCCGCGTCCTGTGCGCCCCACATGTGCGCACACGAAATATATTCCCATGGT ATCGTGTTGAATTTCACTGGAAAGTCAAAAGCCCGGCGAGAGCCAAGTGGATATCTAAATATCTA GCTCTTCTCTTTTTCAAACTGCATTCTTTGTACAAGTGTTCTAGTCTCTTTTCCTTCTTCTTTCT ATCCCGGATATCCCACACTTCTCTAACACCTTCCATTGTACAAGT Found at