TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:18450262 original size:5 final size:5 Alignment explanation
Indices: 18450254--18450266 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 18450244 AAAAAAACCA 18450254 AAATC AAATC AAA 1 AAATC AAATC AAA 18450267 AAATTCCCTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15 Consensus pattern (5 bp): AAATC Left flanking sequence: Indices 18449754 -- 18450253 CTTAACTTTTCAATAAAACAAAAAAATCGCCTCGCTCCAGCCCACCAACACCAAATGCATTCCGG AATGCGTAGGAGCCCGAGGCCTTATAATCCTGATAGAGCTTGACTCCAAAGAGAAGCCTGCTCTG TCGGATTCCACCACCTAGAAATTCCAAGAGAATTTCAACCGCCTAGAAATTCCAAGAGAATTTCA ACCACCTGGAAATTCCAAGAGAATTTCAACCACCTGGAAATTCCAAGAGAATTTCAACCACCTGG AAATCCCAAGAGAATTTCAACCACCTGCAAATTCCAAGAGAATTTCAACCGCCTAGAAATTCCAA GAGAATTTCAACCACCTGGAAATCCCAAGAGAATTTCAACCACCTGCAAATTCCAAGAGAATTTC AACCGCCTAGAAATTCCAAGAGAATTTCAACCACCTGCAAATTCCAAGAGAGTTTCAACCACCAA GAAATTCCAAGAGGATTTCACCAAAAACAAAAAAAAAAAAAACCA Right flanking sequence: Indices 18450267 -- 18450766 AAATTCCCTCAAAAATTCCCTCAAATTCCGACTTTAGTTTTCCCTGGTCCTTCTTTATTTTTCTC TTTTTTCAATTCATATTGTCTAATAGTTAATAATTAAGGTTACTGGATTATTATTGTCCTCGGGC AATTACCCTCGATTTAAATTATGGCGTCCTTGAACAATGGCCCAATATACCCGGACCGTAGCGAC CACCCGTCACCCGGGCAGGACGCACGGATCCCAACATCAACCGCGACTGAAAGAGTGACCGCAGG TCGGACGAAAAAGAGAACTACTTCTCTCGCGATCCGTCTTGTAGGACCTCTGAAACGTCGCATCA ACCAAAAAATTGAGATAGCTAAGCGTGTCTTAGCTGAATCGGAAGCGAAGATGAAAATCTTCCCG ACCATGCCGCCTCACCATCTTATCAGCGATGAGGACGCAACTTACCTCGATGCACTACTAATTCG GCTTCAGACCGTATTGGGGGCACTCGAGGGAATGCGCGACTTCAT Found at i:18450269 original size:1 final size:1 Alignment explanation
Indices: 18450231--18450250 Score: 33 Period size: 1 Copynumber: 20.0 Consensus size: 1 18450221 GGATTTCACC * 18450231 AAAAACAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAA 18450251 CCAAAATCAA Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.95, C:0.05, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 18449731 -- 18450230 TTCATCTCAACATCCGCACTCACCTTAACTTTTCAATAAAACAAAAAAATCGCCTCGCTCCAGCC CACCAACACCAAATGCATTCCGGAATGCGTAGGAGCCCGAGGCCTTATAATCCTGATAGAGCTTG ACTCCAAAGAGAAGCCTGCTCTGTCGGATTCCACCACCTAGAAATTCCAAGAGAATTTCAACCGC CTAGAAATTCCAAGAGAATTTCAACCACCTGGAAATTCCAAGAGAATTTCAACCACCTGGAAATT CCAAGAGAATTTCAACCACCTGGAAATCCCAAGAGAATTTCAACCACCTGCAAATTCCAAGAGAA TTTCAACCGCCTAGAAATTCCAAGAGAATTTCAACCACCTGGAAATCCCAAGAGAATTTCAACCA CCTGCAAATTCCAAGAGAATTTCAACCGCCTAGAAATTCCAAGAGAATTTCAACCACCTGCAAAT TCCAAGAGAGTTTCAACCACCAAGAAATTCCAAGAGGATTTCACC Right flanking sequence: Indices 18450251 -- 18450750 CCAAAATCAAATCAAAAAATTCCCTCAAAAATTCCCTCAAATTCCGACTTTAGTTTTCCCTGGTC CTTCTTTATTTTTCTCTTTTTTCAATTCATATTGTCTAATAGTTAATAATTAAGGTTACTGGATT ATTATTGTCCTCGGGCAATTACCCTCGATTTAAATTATGGCGTCCTTGAACAATGGCCCAATATA CCCGGACCGTAGCGACCACCCGTCACCCGGGCAGGACGCACGGATCCCAACATCAACCGCGACTG AAAGAGTGACCGCAGGTCGGACGAAAAAGAGAACTACTTCTCTCGCGATCCGTCTTGTAGGACCT CTGAAACGTCGCATCAACCAAAAAATTGAGATAGCTAAGCGTGTCTTAGCTGAATCGGAAGCGAA GATGAAAATCTTCCCGACCATGCCGCCTCACCATCTTATCAGCGATGAGGACGCAACTTACCTCG ATGCACTACTAATTCGGCTTCAGACCGTATTGGGGGCACTCGAGG Found at i:18451022 original size:6 final size:6 Alignment explanation
Indices: 18451013--18451026 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18451003 AAGCCGATGC 18451013 GGAGAT GGAGAT GG 1 GGAGAT GGAGAT GG 18451027 TCGAATCGAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14 Consensus pattern (6 bp): GGAGAT Left flanking sequence: Indices 18450513 -- 18451012 AGAGTGACCGCAGGTCGGACGAAAAAGAGAACTACTTCTCTCGCGATCCGTCTTGTAGGACCTCT GAAACGTCGCATCAACCAAAAAATTGAGATAGCTAAGCGTGTCTTAGCTGAATCGGAAGCGAAGA TGAAAATCTTCCCGACCATGCCGCCTCACCATCTTATCAGCGATGAGGACGCAACTTACCTCGAT GCACTACTAATTCGGCTTCAGACCGTATTGGGGGCACTCGAGGGAATGCGCGACTTCATTGACGA TAAGTTTGGCGATCCGGAAATGGCGGAAAACCCGAATCAGCAAGCATACTATCAGGAAGTTATCG AGCTACTCGAGAAGTCCAAAGCATCTTCCTTTGCGAATCAACTGAGACGCGAAATCGAAGTGCTG CGGATGGAAATGAGAGTGAGAAACATCCCGATCTCATCGTTTGACGTCTCTACACTGGAAGCCAC GGACGCGGAAGCAGGAGCTGTGACTGACGAAGATGAAGCCGATGC Right flanking sequence: Indices 18451027 -- 18451526 TCGAATCGACGGTGGAAGATCAAGCTCACAGGAGCTCAGGTCTACATCGTACGGTAACCAACCTC CGTACTCTGCACGGAGCCTCAAACTCGCCAGCAGGGACTCCACTTTCGAATCGTTCGGGGCTTTC ATGGGATGATGGCGCGATGACTCTTCACGACGAGTTACGATACTCGTACATGATGGGCCGCGTCG AGTCTCAAGTAGATCAGTCAACACCCGCGTCAAATCGAGGAAATGGTACTCGTGCATCGACTGAG CAACAACAACTACATGGTACATCATCAACGCTCCAGGGGGTGGTCCAAGGGAAACGTGAGCAGAT CGAACAGGGCCCGCGTGACACCCCCATTCTCAGGAATGATGTCCCCACGACTAAGGGACCAGGTA CGCTTACAACGACCGAGTATGCTGGGCCAGTCTTGCCGACACGTAGAGACAGAGATCTCACGATG ATCCATGCAAGTGCTGGAACTCATACAGAGTCAATCTTCCACCCA Found at i:18452795 original size:6 final size:6 Alignment explanation
Indices: 18452784--18452797 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18452774 CGGTATTGTA 18452784 AAATGC AAATGC AA 1 AAATGC AAATGC AA 18452798 GCTGGTATGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14 Consensus pattern (6 bp): AAATGC Left flanking sequence: Indices 18452284 -- 18452783 GGGGTCAGAAAGGAGAAAACGCCACGTTCCACGAGATCTTTGACTTTGTCAACAAATGCATTGAT GACATAGCAAGAGAATCGGTGCTAGCTCTCAAACATCTCCCCTACACCGGCCAAAATGAAACTAG CGGACATGGAATCGAGCTCCCGTATGAGGTTACTCTCAATGTAGCCGAAGCCTACCAGGATCTAG GAAACTTGAAGAAGTCCAAGTACTTGGCGGATAGCCCTGTGTACAAACCAGCGGACCATCCAGAC AAGTATTATGATACTTCTTCAGGTGAGTTGTTGGAAGGATGGTATGCACCGGGAAAAGGTCCAAT CATGAACCTTCTCCCGAAGACATTTCCAATTCAAGGCGAAATCCCTAAGAACCCATGTCGAGCTT GCGGAGAACGACACTCCAGTATAAGATGTACGCTCTCCAGCAAGGCATTCAGACAGGCGCTACGG GATGCCAAGCTATGTCCAATTTGCACGGGTACACACGGTATTGTA Right flanking sequence: Indices 18452798 -- 18453297 GCTGGTATGTGTTCTCTGCCAAGGTATGCATCACACGGGTGGATGCACAAAAAGAGAGTATTATC GAGACATGAACAACTACCCAGATGACGCGCCTCCCGTTCAGCAGTTTTTCGAGCTAGCCGGGAAG GCCGGCAATCGGGAACCAACCAGCAATAGGCAGGCCTGGGCAGGCACGGGGACAACACCATCGTA CCCCGTTCCCCAGGTCGCATTGCAACCGCCCTCTCAAATATCATGTCCGATTTCTCTTCCAACAC CACCCGCGCATTCACCCGACAGTAACACTTTTCTCACTTTCCTTCCAACAACAGATCCGCAACAA GTCCCAACAAAACCAGATGTAGAACAATTCGCAGCCGCCATTTCCCGAGCAAAACCAGCATACCA GCTGGCGGCGATCGCAGAAAAGTCGGTACGTGACCACGGACTTTCCTTTTTATGTCTACGCACTA AGGAGAACGATTGCATCCCGACTCTTGTAGATTCTGGAGCATCGA Found at i:18459111 original size:5 final size:5 Alignment explanation
Indices: 18459101--18459116 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 18459091 TATATACTTC * 18459101 AAAGA AAAGA AAGGA A 1 AAAGA AAAGA AAAGA A 18459117 GAAAATTGAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00 Consensus pattern (5 bp): AAAGA Left flanking sequence: Indices 18458601 -- 18459100 TTAATAAGTTTGAGTTATTTCTTACCAAGCAATCGATTTTTACGACGATACAAAAATCACAACTG CAATCGGAATCAATATTATTAAAAAGAACTCGATAAAGGTCCTTAGAATTATTGTCGGTGACAAC TTACCATTCCCAATTCACATGGCTTACATTTTTAATGCAGCTGTACTTAAATGTAGGCAATTACT CACAGCGTTCCGAACAACAAAATGCAAGCTTTATTTCAAGTTTTACAGTATCTAAAGTTGTACAG TATACTATGATACTAGAAAACCTCTCCACATCGACTCAGGACGTGTTTTTCGACAATGCAACGTT AATTACTAATCTTATGAAGATCGTCTTGCTAAAGCCAACAAATCTATCCAAAATATGAGAATTCT TCAACTCCTTAGACTTTCTCCCCATGTATTTTATGGTTTATAGGATCACTGCACCATTCTCCTCT TCTACCCGTTGACAATTTTTATTCCGAGCATGAAATATATACTTC Right flanking sequence: Indices 18459117 -- 18459616 GAAAATTGAAAATTTGAACATTACTGTAACATTCCTATCCAACTGTCGACATGGTTAGTGTTCTT TGATAATGAGTCACGAGGAAAACATATTTCGAAATACTATCCATAGTGTTGAATTGATTTTTGCA CATAAAAATATACTTGAAGGTTTAAAATTAAAGTCACATTCCTATTCAACATGGTTGATATGATA ACACGTTTTTTCTGAGGAATAAACTTTTGTGTGTGTGTGTTTGCTTAGCGTGCTCACAGCTAATT TTGAGCACAATAAACATCTATAAAATCGTGTGCATTAGCAGTTTGATTCACTTTTCGTCTATTTG CTTGAAATGGAGCTCGAAGCTTATACAGATTGTCGTAGTGTTTCAAACTTCTTCAACAATAACGC CATCGACAATCGAAAAGTGGGTGATTTAAAATATTTATTGAATTTCCGAGAAAATTATATTAAAA ATAGTTCGCCAGAAGAGTTATGTTTCTGAAATTTAACTCTATTAT Found at i:18459346 original size:2 final size:2 Alignment explanation
Indices: 18459339--18459351 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 18459329 AATAAACTTT 18459339 TG TG TG TG TG TG T 1 TG TG TG TG TG TG T 18459352 TTGCTTAGCG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54 Consensus pattern (2 bp): TG Left flanking sequence: Indices 18458839 -- 18459338 TACAGTATCTAAAGTTGTACAGTATACTATGATACTAGAAAACCTCTCCACATCGACTCAGGACG TGTTTTTCGACAATGCAACGTTAATTACTAATCTTATGAAGATCGTCTTGCTAAAGCCAACAAAT CTATCCAAAATATGAGAATTCTTCAACTCCTTAGACTTTCTCCCCATGTATTTTATGGTTTATAG GATCACTGCACCATTCTCCTCTTCTACCCGTTGACAATTTTTATTCCGAGCATGAAATATATACT TCAAAGAAAAGAAAGGAAGAAAATTGAAAATTTGAACATTACTGTAACATTCCTATCCAACTGTC GACATGGTTAGTGTTCTTTGATAATGAGTCACGAGGAAAACATATTTCGAAATACTATCCATAGT GTTGAATTGATTTTTGCACATAAAAATATACTTGAAGGTTTAAAATTAAAGTCACATTCCTATTC AACATGGTTGATATGATAACACGTTTTTTCTGAGGAATAAACTTT Right flanking sequence: Indices 18459352 -- 18459851 TTGCTTAGCGTGCTCACAGCTAATTTTGAGCACAATAAACATCTATAAAATCGTGTGCATTAGCA GTTTGATTCACTTTTCGTCTATTTGCTTGAAATGGAGCTCGAAGCTTATACAGATTGTCGTAGTG TTTCAAACTTCTTCAACAATAACGCCATCGACAATCGAAAAGTGGGTGATTTAAAATATTTATTG AATTTCCGAGAAAATTATATTAAAAATAGTTCGCCAGAAGAGTTATGTTTCTGAAATTTAACTCT ATTATTGCTCATGATTAAATGAGTACTGACACCTTCCAAATTTTAATTTTGTATATTTCAGGCTT ATTTATTTTCCAATTGTTCTGTTAACATTTCACAAGTGGCTGAATTGAATCTCGATTCTCTCGAC TTATCATTAGACGAATATGAATCACTTGTTTTGAAAATGATTGCCGGCCATCAAGCGGAGATCAA AAAATTGCAAAAAAAGTTGGCGGACGTCCGGACGAAAAAAATGCA Found at i:18460356 original size:2 final size:2 Alignment explanation
Indices: 18460349--18460362 Score: 28 Period size: 2 Copynumber: 7.0 Consensus size: 2 18460339 TTTCTGCGCC 18460349 CT CT CT CT CT CT CT 1 CT CT CT CT CT CT CT 18460363 ATGCGGTGGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50 Consensus pattern (2 bp): CT Left flanking sequence: Indices 18459849 -- 18460348 GCACATGCTTATCGTCATGAGCAATAAATATAAAGAGCAAATTGATAATTATTGAAAAAACGCCG CCAATTTTTGGAATATAATGGTGAGCCCAGTTGAGATACATAGGTTATGTGCTCTTTTTTCGGGA AAATGAGCATTTTTTGTAGGTGCAGATTACTTGGGTAATTGAGTTTGGCTACGACGTCTACTTCT GACCGAATGTTCCGAATTCTGCGGAATTTGATTAATATTTTGTGTAACATTAAGTTTCCGTTCCG ATAACGTGTATTTATAAAATTTGGAACAAATCATAGTTTTTGAAAATAAATTTTTTGTTGAAAAT TTGGAAATTTGTACCAAAATATTTTCTTTGTAAAGTTTTCCAATTCTTTTTAGATAATTTGGATT TATTTTCATGTGCCGTTCAAAATAAATATAATCATGGCATATTTCTGATAACTTTGAAATTTCGA CAAAGAGAGAGCGCAGAGAAACGAGACACTCTCGCTTTCTGCGCC Right flanking sequence: Indices 18460363 -- 18460862 ATGCGGTGGGTGTAAAAACGCCCGTAACTCTGTGTTTTTTGATCCAGGTACTATGATATGTATAT TTTTGGAATCAGGAGACAATTTCGGTTTAAATGAAAACAATAAAAGTTTTAAAAAAAATTTTAAA AATTTTTGATTTTTTGGAAAAAAATTATCGAAAATTTTCGGATTTTCAAAATTTTTAAAAACAAA TTTATTTTTGAAGAATATCGTAAATTGATTATTTTTGACAATTAAATGTTTAGGAAATTATTTTT TTTTTTGAATTTTTGAATAGAAAAAAGTGACGGAATTTCGATTTTTTTTTTTTAATATAATACTT TTTCTCAAAACTCGAGTAGCCGGCAAAATTAAAATTAAAGAATATATCACTATCAGTAAATCGGC ATAAATCTGAAAATGGCAGGTTTTTGATTTTTTCTAATAGAAAAACGAAAAAAAAATTCAAAAAA AAAGTTTTACTCCAAACTTTAAAAATACAATTTAAAAAATTTGAA Found at i:18460723 original size:6 final size:6 Alignment explanation
Indices: 18460712--18460726 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 18460702 AGTAGCCGGC 18460712 AAAATT AAAATT AAA 1 AAAATT AAAATT AAA 18460727 GAATATATCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27 Consensus pattern (6 bp): AAAATT Left flanking sequence: Indices 18460212 -- 18460711 TCCAATTCTTTTTAGATAATTTGGATTTATTTTCATGTGCCGTTCAAAATAAATATAATCATGGC ATATTTCTGATAACTTTGAAATTTCGACAAAGAGAGAGCGCAGAGAAACGAGACACTCTCGCTTT CTGCGCCCTCTCTCTCTCTCTATGCGGTGGGTGTAAAAACGCCCGTAACTCTGTGTTTTTTGATC CAGGTACTATGATATGTATATTTTTGGAATCAGGAGACAATTTCGGTTTAAATGAAAACAATAAA AGTTTTAAAAAAAATTTTAAAAATTTTTGATTTTTTGGAAAAAAATTATCGAAAATTTTCGGATT TTCAAAATTTTTAAAAACAAATTTATTTTTGAAGAATATCGTAAATTGATTATTTTTGACAATTA AATGTTTAGGAAATTATTTTTTTTTTTGAATTTTTGAATAGAAAAAAGTGACGGAATTTCGATTT TTTTTTTTTAATATAATACTTTTTCTCAAAACTCGAGTAGCCGGC Right flanking sequence: Indices 18460727 -- 18461226 GAATATATCACTATCAGTAAATCGGCATAAATCTGAAAATGGCAGGTTTTTGATTTTTTCTAATA GAAAAACGAAAAAAAAATTCAAAAAAAAAGTTTTACTCCAAACTTTAAAAATACAATTTAAAAAA TTTGAAAAAAATACAAAATTAACCAAAAATTTCAAACAAATTGATGTGTAGAACAGGCAACGGAG TACACCACCCCATCTCGGGCTTTGATCACATTTTTCGTAAATTGGGTACGGAAATCTTTTTTTAT ATGATATCCATCACTTGGGAGCAACTTTTGGAGCAATCTAAAAGTTTTTTTTATTTAAAAATTTT TTTATTTTTTTAAATAATTTTTTTATTTTAATTTATTTTAATTTTTCAAAAAATGTTGGACTCGG CCTTTTTTAACGTAATTTTTCAAATTCAGCATGCCCTCCCGGTCAATTTAAGGATAATCATGACA TGTTTCTGATAACTTTGAAATTTTGGAGAGCCCAGAGAAACGAGA Found at i:18461086 original size:5 final size:5 Alignment explanation
Indices: 18461073--18461095 Score: 32 Period size: 5 Copynumber: 4.6 Consensus size: 5 18461063 AAATAATTTT * * 18461073 TTTAT TTTAA TTTAT TTTAA TTT 1 TTTAA TTTAA TTTAA TTTAA TTT 18461096 TTCAAAAAAT Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 5 15 1.00 ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74 Consensus pattern (5 bp): TTTAA Left flanking sequence: Indices 18460573 -- 18461072 TATCGTAAATTGATTATTTTTGACAATTAAATGTTTAGGAAATTATTTTTTTTTTTGAATTTTTG AATAGAAAAAAGTGACGGAATTTCGATTTTTTTTTTTTAATATAATACTTTTTCTCAAAACTCGA GTAGCCGGCAAAATTAAAATTAAAGAATATATCACTATCAGTAAATCGGCATAAATCTGAAAATG GCAGGTTTTTGATTTTTTCTAATAGAAAAACGAAAAAAAAATTCAAAAAAAAAGTTTTACTCCAA ACTTTAAAAATACAATTTAAAAAATTTGAAAAAAATACAAAATTAACCAAAAATTTCAAACAAAT TGATGTGTAGAACAGGCAACGGAGTACACCACCCCATCTCGGGCTTTGATCACATTTTTCGTAAA TTGGGTACGGAAATCTTTTTTTATATGATATCCATCACTTGGGAGCAACTTTTGGAGCAATCTAA AAGTTTTTTTTATTTAAAAATTTTTTTATTTTTTTAAATAATTTT Right flanking sequence: Indices 18461096 -- 18461595 TTCAAAAAATGTTGGACTCGGCCTTTTTTAACGTAATTTTTCAAATTCAGCATGCCCTCCCGGTC AATTTAAGGATAATCATGACATGTTTCTGATAACTTTGAAATTTTGGAGAGCCCAGAGAAACGAG ACACTCTCGTTGTCTGCGTCCTCTCTCTTTTTCAGTTGGGCGCAAAAACCACCGTATCTCAGCGA ATATTGCGGTGGGACCCATGTTGAATATATTTTTCAAAATCAGAAAATTAAGACAAATTGATTGA GTATATTTTTGAATGTTTTTGAAAAAAAAATTTGCGACATTTTTGAAATTTTTTCAAAAAACTTG ATTTTTCAAGCAAATTTAACAATTTCTTATCAAACATTTATCTCCCAACATACCTCTCCACATCT TTATTAACATCCGGGTACCAGAAAATCAACTTCTCAAAACTTGCAAAATCCGGAATACTTTTCAT CATATCCGCCATTAAAACCTCCGCAACTTCCACATTTTCAGCATA Found at i:18461907 original size:1 final size:1 Alignment explanation
Indices: 18461903--18461936 Score: 54 Period size: 1 Copynumber: 34.0 Consensus size: 1 18461893 TCTAAAACTT ** 18461903 AAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 18461937 TTTTTAGAGT Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 1 31 1.00 ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06 Consensus pattern (1 bp): A Left flanking sequence: Indices 18461403 -- 18461902 ATTTTTTCAAAAAACTTGATTTTTCAAGCAAATTTAACAATTTCTTATCAAACATTTATCTCCCA ACATACCTCTCCACATCTTTATTAACATCCGGGTACCAGAAAATCAACTTCTCAAAACTTGCAAA ATCCGGAATACTTTTCATCATATCCGCCATTAAAACCTCCGCAACTTCCACATTTTCAGCATAAA ACGGTGCAGCGCAAAGCCGGTTTAGGTTGACCACTCGGATAGTACAGTAACCCACAATTTTCTGG TTGCTGTCAAATGCGATCTGGAAGAAGTTTTGAAATTTTGAAAATTTCGGAAGTTTTTCGGTTTT TGGGGGTCTCGCCAGGAAAAGTTTTGGGGTACAGTAGTTTTTGATAATTTTTTTCAAAATTTTTA TGGATTTAGTTTAGAAATGTATTTTGTACATTTTGAATGTAAAATACGCTTATATATTGCATTTT AACAATGTTATAAAATTTGAAATTTTGGAAAAAATTCTAAAACTT Right flanking sequence: Indices 18461937 -- 18462436 TTTTTAGAGTCCCGCCAGGAAAAGTCTTGGGGTACTGTAATTTTTCATGATTTGTTTCAAAATGT TTTTGAATTTAGTTTAGAAATGTATTTTGTACAATTTGTATGTCAATTTAGCTTATAGATTGTAT TTTGAGCAATGTTATAGTTTTTGAAATAATAATAATATATAACAATGTTATAGTTTTTGAAAAAA AAGAGTTTTGGAAAAATTTATAAAATTTTTCTAAAAAATTTTGAAGTCCCGCCAGGAAAAGTCTT GGGGTACTGTAGTTTTTGATGGTTTTACTAATATTTTTTTAGACTAATGTTAATTAATGTATGTT TTGCAAACTGTATTAAAAATTAGCTTAATTGCTATATTTCAAAGGAAGTTATGAATTTTTGAAGA TAACAAAAAAATTTCCTTAAAATTTTTTTGGATTTTTTTCCGAAAATTCAACAAATTCTGGGGCT CATTTTTTCCAGATTCATTTTAAATATTTTCTGCCCGAAACTCAC Found at i:18462099 original size:3 final size:3 Alignment explanation
Indices: 18462091--18462112 Score: 28 Period size: 3 Copynumber: 7.0 Consensus size: 3 18462081 TAGTTTTTGA * 18462091 AAT AAT AAT AAT ATAT AAC AAT 1 AAT AAT AAT AAT A-AT AAT AAT 18462113 GTTATAGTTT Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 3 13 0.81 4 3 0.19 ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 18461591 -- 18462090 GCATAAAACGGTGCAGCGCAAAGCCGGTTTAGGTTGACCACTCGGATAGTACAGTAACCCACAAT TTTCTGGTTGCTGTCAAATGCGATCTGGAAGAAGTTTTGAAATTTTGAAAATTTCGGAAGTTTTT CGGTTTTTGGGGGTCTCGCCAGGAAAAGTTTTGGGGTACAGTAGTTTTTGATAATTTTTTTCAAA ATTTTTATGGATTTAGTTTAGAAATGTATTTTGTACATTTTGAATGTAAAATACGCTTATATATT GCATTTTAACAATGTTATAAAATTTGAAATTTTGGAAAAAATTCTAAAACTTAAAAAAAAAAAAA AAAAAAATTAAAAAAAAAAAATTTTTAGAGTCCCGCCAGGAAAAGTCTTGGGGTACTGTAATTTT TCATGATTTGTTTCAAAATGTTTTTGAATTTAGTTTAGAAATGTATTTTGTACAATTTGTATGTC AATTTAGCTTATAGATTGTATTTTGAGCAATGTTATAGTTTTTGA Right flanking sequence: Indices 18462113 -- 18462612 GTTATAGTTTTTGAAAAAAAAGAGTTTTGGAAAAATTTATAAAATTTTTCTAAAAAATTTTGAAG TCCCGCCAGGAAAAGTCTTGGGGTACTGTAGTTTTTGATGGTTTTACTAATATTTTTTTAGACTA ATGTTAATTAATGTATGTTTTGCAAACTGTATTAAAAATTAGCTTAATTGCTATATTTCAAAGGA AGTTATGAATTTTTGAAGATAACAAAAAAATTTCCTTAAAATTTTTTTGGATTTTTTTCCGAAAA TTCAACAAATTCTGGGGCTCATTTTTTCCAGATTCATTTTAAATATTTTCTGCCCGAAACTCACT CTAGTATAAACCTGATCCTGTTGAAACCAGTTTCTCATGAGTTTCTTGCGATTTCGGGTGCAAAT TGTTAGGTCATAGGCTTCTAGCTGAGCTTCACCCACCTCTTTCCAGTCCTGAAAACTTGTTAATT TTAGAATTAGAGCCCTATTGGGTTAAAATTTGAATTGAGCAGATT Found at i:18462994 original size:1 final size:1 Alignment explanation
Indices: 18462990--18463009 Score: 40 Period size: 1 Copynumber: 20.0 Consensus size: 1 18462980 AAAAAATTCG 18462990 AAAAAAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAA 18463010 TATCAAGATT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 19 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 18462490 -- 18462989 TTCGGGTGCAAATTGTTAGGTCATAGGCTTCTAGCTGAGCTTCACCCACCTCTTTCCAGTCCTGA AAACTTGTTAATTTTAGAATTAGAGCCCTATTGGGTTAAAATTTGAATTGAGCAGATTTTTCTGA TCAGTTTGAGTATAACTGTGATGACAATTTTGAAAATTCGAAAAATTAAAGAAAAAAATTAAATG AAAATTTTTTTGAAAAAATTTTTCCAAATTTTTAAAACTTTTTTTTCAATTTTTTGGTTTTTTAA TTACCCAAACAATTACGTTCTTACTCAATTTTCATACCTTTGTAACATATTTCTCCGTCAAATCC GCTGAAATTCTCATTTTTCCCGGCTCAATTTCTGCTTCCATATGCCAAAACGGGAGCATTTCCTT GAATCCAAAAGTGGTGGCGTACTTTTCAGACATGTCCACTGCTGAAAATCTATATGAATGTAAGA GGAAACTGTGAAAATCAGAAAATTAGAAAAGTTTTAAAAAATTCG Right flanking sequence: Indices 18463010 -- 18463509 TATCAAGATTTTTTTTCCAAAAATTAACAAAATTATACTCATTGTGACCGTCTCAATTTTTTGAT TTAAAATTTTCAATTAAATAGCTAAAATTGACCCACCAGCTGTCAGAACGCAATTTCCGTCCCCC ACAATACCCATCATCGCCTTGAAAACCGGCAATCCGTGTCCTTTCCCACGATATTCTTCCTTACA GTAATACAGACCAATTGAGTAGAGTGAAGCCTCATTTTCAGCATCCCACCGTGCCAAACACCCGC CAGCAACAAAGTTTTCATGGGGTTCTGAAAAAATTTTTGGGGAAATTTCAAGTTTTCCGCAGTTT CCTAGTTTAAAATTGGTGTTATCCTATTACTCTCACCGAAAAAAAATATTTTGCCCGTAGTGGGG GTCGAACCCATGACCCTTACACTGTAGCCATTCATGTTAGCCACTGCGCCAGCGCAGACAGCTAG AGTGTCTCGTTTCTCTGCGCTCTCTCGAAATTTCAAAATTATCAG Found at i:18464838 original size:5 final size:5 Alignment explanation
Indices: 18464824--18464839 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 18464814 ATTCTAGATA * 18464824 GTTTT GTTTT TTTTT G 1 GTTTT GTTTT GTTTT G 18464840 AAATTTTATT Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81 Consensus pattern (5 bp): GTTTT Left flanking sequence: Indices 18464324 -- 18464823 TTTAATATCCCTACTTATCACGGAGATATAGGAGTTTTAAGTTTGCGGGCTCAAATTTGAAAGTT TTGGAAAAATGGGTCGCGTTAGCTCAGGTGGGTAGAGGGATGGCGTCGGGGCAGAGGTCCGGGGT TCGAGTCCCCGGTGGGGTATTTAATTTTTGTTAGGAGCTGCGAGTTTATTCAACAAAAAAGTTTT GATCAGAAGTTGGAAATTTAGGTATTTTTCACCAAAAAATTCTGAACATGAGCAAATAATTTGCT CCAATGTTTCCAGATCAGAAAATCAACCCAAATTTCAGATTCTCCATGAAATTTTAATGCTTAAA CACCCAGCATACCACTAGTTTTCTCAAATTTAAAAATGGGTCGAAGTGGCTCAGGTGGGTAGAGG GATGACTATGGGGAAATGGGTCCGGGGTTCGAGTCCCCGAGAGGTAAATAGTTTTTGTTCGGTTT TTTTTTTGAACTTGTTTAGTGTAAAATTTCGGAAAATTCTAGATA Right flanking sequence: Indices 18464840 -- 18465339 AAATTTTATTTTTTATTTTTCAACCTTTTCAGTATTAGCTACTTTTTTTTCACTTTGGGCTTAAT TTATCAGTTCAAACACTAAGGTTTCGCTAAGATTACCCAATTTTCGATCACTATTGCACAATATT ATCACACTCTCATCGGATATAAAGTCATTCGATTTCCAAACTTTTTTAGCAGTTTTTCCAATTTT TCTCGTGCTTTTTTCTACAATAAAGTGACGGTATAAAAATCAAATCACTAATTTTCTTATCATTA GTGATAATAAGGGGAAATTCATTGAAACAATTGCCATTTTGGTCGGGGGGAAAATGATGAAATTT TCAGTTTTTTTGCGATAAAAGCTACGAGTGTAGTAGTTTTATGCACATTATTGGCAATTATTGAA ATTTTAAGAATTATTGATTTTTTTTTCAAAATTTCAAAAAATCGTTTTTTTTTTCGAAAATTCCT AAAATAGTCAATTTTCATCCGTTTTTGCTCATTTTTTCTGTATTT Found at i:18467571 original size:6 final size:6 Alignment explanation
Indices: 18467557--18467574 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 18467547 AAATTACACA 18467557 AAAAT- AAAATC AAAATC A 1 AAAATC AAAATC AAAATC A 18467575 TTCAAATCTA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 5 5 0.42 6 7 0.58 ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17 Consensus pattern (6 bp): AAAATC Left flanking sequence: Indices 18467057 -- 18467556 GGGTATGTTTTGTCTAGAATTTTTTTTAAATATTCGATAAATTCAGTAAATCCGATTTTTAATTT TTTTCAAAAAAAAAAACTAAAAATTTCCAAATTCTCAAATTTTCAGGTAGCAATAGACAGTAACC AGAAAATTGTTGGTTACTGTACCATCCGAGTCGTCAACCTGAATCGCATCCGGGCTTCACCGTTT TACGCTGAAAATGGAGAAATTGCAGCCAAATTGCTGGCTGAAACTGTGAAAATTATTCCGAATTT TGAAAAATTCGATCAGCTCAAGTTTTACTACCCATCGGTTAATAAGGAAATGGAGAGGTATGAAA AAATTAATTTTATTTTAAAAATCAACAAAATTCCAAAAAAAAAAACCGACGAAAAAAAATTCAAA AAAATTTTTTTTGTCAACATTTAGAAGCTCGTAACTTTTTTTCAAATATGTATTTTTAGCTAAAT TTTTTAAATAAAAGATGTTAAATTTACTAATTAACAAATTACACA Right flanking sequence: Indices 18467575 -- 18468074 TTCAAATCTACAGTACCCCAGGACTTTTCGTGGTGGGACTCAAAAAATGTTTTTTTTTTAATTTT TTGGAAAATTTCAAAAGCTCATAACTTTTTTTCAAAAAATCTAGAAAGCTAGTAATTTTTTTATT AGATTTCGAGAAAAAAACTCTTACAAAATATCGAAAAATTTAAAACTTTTCCAGTTTGCTCCCAA AATTCCTGCCAGCCGACGGGTACACTGTTAAGGAGAACAATCGGGTGCAGTTCACCAAGAATTTC ATCAAATCCCGGGATGAAGCTGTGTATTCCGTGTCTTGCACTACCCATCAATATATTTGAAAAAT TAGTTTTCAGGTTTTCAGGAAAAAAATTTTGAAAATCAATAAATTTAGATTATTTTTTCAATTTA TTTTTTCCAATTTCAAAAATAAATATCAATATTTTACTTCTGAAGTTTTGTATATTTCATTAACA CAAACAAGAAAAAAAAAGGAAAACCACACCTGGGATTCGAACTCC Found at i:18471948 original size:1 final size:1 Alignment explanation
Indices: 18471908--18471931 Score: 34 Period size: 1 Copynumber: 24.0 Consensus size: 1 18471898 TTGAAAAACC ** 18471908 AAAAAAACCAAAAAAAAAAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAA 18471932 TTGAAAATTT Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 1 21 1.00 ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 18471408 -- 18471907 AGTTCATTAGACGGCAATTTTTCTTTTGAAGAAAAACAAGTATTTTTCTTCTTTTCATAATTAAC AAGTTGCAAAATGCACTTATATAACCTCATAATGAACATTTAACACTTGAACAGTGCATTTTCTT TTGTAAAAATCTGAAGTGCAAGAAAATCGCCGAGCGGCGATCGCCGATTTTTTCAGATTTTCCGG TCGCCGATCGCCGAAGACAAAAATGTTAACGGCAATCGGCGATCGCCAATCGCCGTGTTAAAAAT TATTATCGGCGATCGCCGATCGCCGATTTTTTTCGATCGCCGCTCTCCCCTGGCCTAATCTACAG TATATTAAATTTGGGACAATTATTTGATTAACTTACTGAATTGCTTGGCCATCCGATTTTAAAGG TTGGATACCACAGTTTTGTCCTGAAGAAAACACGCCGGGAACAGGGCTGGGACCAAAAAAAAGAT TGGACCAAAAAACAAAAAACAAAAAATTTAAGTTTTTGAAAAACC Right flanking sequence: Indices 18471932 -- 18472431 TTGAAAATTTCGAAAAACCAAAAAAAAACCAACAAATTTTTGATGCTTAAGTTAATTTTTAATGG GGTTATTTAAGTAATGTTGCAAAATGTTTAAAAATACACTTATGACGTCACAACTGTGTTAAAAT ATTAGACCCAAAATGGTCCAAAACTACCGAATTTCGTAATGAGACGTTCTGAAAATTTTTCAAAA AAAAGTTATGACCTCTCAAAGTTTTGGAAAAAACGGCCTATTTTCAGCTAAACTCTCAAATTTTG GCAACTTATCGGTGTCGCAGTGATTGGAACTTAATTTTTATTTGATTATCATCCTTTAATGCATG TTTTGGCATTTTATTACGTGTTGTTTCGTTTATTGAGACGCTTTTTTGGCCAATGGGGACGGAAA ATTGAATCATATTTGCGTCCCCATTGACCAAAAAACTCAATCTTCTCAATCAAAGAAACAACACG TAATAAAATGCCAAAACATGCATTAAAGGATGATAATCAAATAAA Found at i:18473750 original size:6 final size:6 Alignment explanation
Indices: 18473739--18473752 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18473729 TTTCTATGAA 18473739 AATTTG AATTTG AA 1 AATTTG AATTTG AA 18473753 GCCAAAATAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (6 bp): AATTTG Left flanking sequence: Indices 18473239 -- 18473738 GCAATTACTCGGTTTTTGCCACACATAATTTTGGAAGTCGACCAAAAAAATTTTTTTCGACATTT TTTATGTTATAATTTTGTTTAAAGTATTTGTATTAGAACATTGTAGGGGTCGAAACATGCGACAT TTCTTTAAATTTCTTCAAAAGCTCGTATTTTTCAAAATTTTGGCAATTTGCCAAAACTTTGGCCG GAAATTATGAAAAATCTAAAATTTTTTTGTGTGTTTTATTATGATATTCGGATGTTTTGGATTAT TATAAGTGCCTTTAGACAAAATCCCCACTGGCGGTACCTTTAAAGAAAATTTGAACTTCACTACA AAATATTTTCTACAAAAGTTTTAAATTCCCGTCAAAATAATTTTCTGAAAAATTTCAATTTCCGC CAAAATGATTTGTTTAAAAATTTGAATATCCCACAAATTTTTTTTTTGAGAACATTTGAATTCAT CGCCTTTTTTCAATTGGATTTTCACGTCAAAACATTTTCTATGAA Right flanking sequence: Indices 18473753 -- 18474252 GCCAAAATAATTTTTCAATAAATTTGAAATTTTCCACAAGAATTTTCTTTTAGTACATCTTTTGC CAAGATATTTTTCTGAGAAAGTTCGAATTTCCCGCCAAAATTTTATTTCAAAAAAATTTGAATTA CCTCGTTGTCTACGTGACATCCTTTTCCATCTGCAGTTGGCATCAAAACCAACAAGATAATAAAA ACAGAAGATTTGAGAAACATTCTCGGAAATATTTTTTGTCAGTTTTTCGTGCAAAATATGATAAC CAGCAAGTATTTATGACAATTTTATCACCAATTTATCACACATCACCAGAAATTTGAATATTCTA ATTTTTTATGGTGATGATTTGCAAGATAATTGAATACATCAGTTAGCTATCAACAATCACTGACC ATTTTTGCAAGTTTTAGAGTGATAGCAGGGAGAATTCCGCGGTTTCCAGTCATATGGAAGATGAA AATGGAAAAATTGGAATAGAAAAAAAAAGAAAAAAGCCCGATAGC Found at i:18474231 original size:1 final size:1 Alignment explanation
Indices: 18474227--18474242 Score: 25 Period size: 1 Copynumber: 16.0 Consensus size: 1 18474217 ATTGGAATAG * 18474227 AAAAAAAAAGAAAAAA 1 AAAAAAAAAAAAAAAA 18474243 GCCCGATAGC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 18473727 -- 18474226 ATTTTCTATGAAAATTTGAATTTGAAGCCAAAATAATTTTTCAATAAATTTGAAATTTTCCACAA GAATTTTCTTTTAGTACATCTTTTGCCAAGATATTTTTCTGAGAAAGTTCGAATTTCCCGCCAAA ATTTTATTTCAAAAAAATTTGAATTACCTCGTTGTCTACGTGACATCCTTTTCCATCTGCAGTTG GCATCAAAACCAACAAGATAATAAAAACAGAAGATTTGAGAAACATTCTCGGAAATATTTTTTGT CAGTTTTTCGTGCAAAATATGATAACCAGCAAGTATTTATGACAATTTTATCACCAATTTATCAC ACATCACCAGAAATTTGAATATTCTAATTTTTTATGGTGATGATTTGCAAGATAATTGAATACAT CAGTTAGCTATCAACAATCACTGACCATTTTTGCAAGTTTTAGAGTGATAGCAGGGAGAATTCCG CGGTTTCCAGTCATATGGAAGATGAAAATGGAAAAATTGGAATAG Right flanking sequence: Indices 18474243 -- 18474742 GCCCGATAGCAAGTTTAGAGTTTAGAACTTTATTTCAGAAACTCAAATAAAAAGATCAGCGCTCG CACGTGGTTTCAGAATGTCTCTTTTCGTTTTGATCTCCAAAAATGCGGGAGAAGAGACGAAGAGT TCTCAACTGATTTTGCATGGTTAAGAACGTGCCCACGTCACATTTTTGTGGGCGAAAAATTCCCG CATTTTTCGTAGATCAAATCATAATAGGGTATGGCGGGGCTCACTGCTGTCTTCCATTAGTGTAT GGTCCTGTAGGAAACTGCAACTGTAGGAAATGAAAGCTTTATTCCGAATATCTTGCCTAAATCTT CCCATCGCCTCCAACATGCGAGCTTCTCACTGTATTCGGCTTCTGCTCTATATTGAAAAACTCCA AAGTTGCGTGCCGATAAGGTGTGTGCACAATGAGCATAGTCAGTGTTGACAAGATCCCATGAAAT GCGATTGCGATTAGCGCAGAATTGTTCGCAGCTGGATTTTTTTTT Found at i:18474240 original size:5 final size:5 Alignment explanation
Indices: 18474221--18474240 Score: 26 Period size: 5 Copynumber: 4.0 Consensus size: 5 18474211 GGAAAAATTG * * 18474221 GAATA GAAAA AAAAA GAAAA 1 GAAAA GAAAA GAAAA GAAAA 18474241 AAGCCCGATA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05 Consensus pattern (5 bp): GAAAA Left flanking sequence: Indices 18473721 -- 18474220 CAAAACATTTTCTATGAAAATTTGAATTTGAAGCCAAAATAATTTTTCAATAAATTTGAAATTTT CCACAAGAATTTTCTTTTAGTACATCTTTTGCCAAGATATTTTTCTGAGAAAGTTCGAATTTCCC GCCAAAATTTTATTTCAAAAAAATTTGAATTACCTCGTTGTCTACGTGACATCCTTTTCCATCTG CAGTTGGCATCAAAACCAACAAGATAATAAAAACAGAAGATTTGAGAAACATTCTCGGAAATATT TTTTGTCAGTTTTTCGTGCAAAATATGATAACCAGCAAGTATTTATGACAATTTTATCACCAATT TATCACACATCACCAGAAATTTGAATATTCTAATTTTTTATGGTGATGATTTGCAAGATAATTGA ATACATCAGTTAGCTATCAACAATCACTGACCATTTTTGCAAGTTTTAGAGTGATAGCAGGGAGA ATTCCGCGGTTTCCAGTCATATGGAAGATGAAAATGGAAAAATTG Right flanking sequence: Indices 18474241 -- 18474740 AAGCCCGATAGCAAGTTTAGAGTTTAGAACTTTATTTCAGAAACTCAAATAAAAAGATCAGCGCT CGCACGTGGTTTCAGAATGTCTCTTTTCGTTTTGATCTCCAAAAATGCGGGAGAAGAGACGAAGA GTTCTCAACTGATTTTGCATGGTTAAGAACGTGCCCACGTCACATTTTTGTGGGCGAAAAATTCC CGCATTTTTCGTAGATCAAATCATAATAGGGTATGGCGGGGCTCACTGCTGTCTTCCATTAGTGT ATGGTCCTGTAGGAAACTGCAACTGTAGGAAATGAAAGCTTTATTCCGAATATCTTGCCTAAATC TTCCCATCGCCTCCAACATGCGAGCTTCTCACTGTATTCGGCTTCTGCTCTATATTGAAAAACTC CAAAGTTGCGTGCCGATAAGGTGTGTGCACAATGAGCATAGTCAGTGTTGACAAGATCCCATGAA ATGCGATTGCGATTAGCGCAGAATTGTTCGCAGCTGGATTTTTTT Found at i:18474708 original size:6 final size:6 Alignment explanation
Indices: 18474697--18474709 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18474687 TCCCATGAAA 18474697 TGCGAT TGCGAT T 1 TGCGAT TGCGAT T 18474710 AGCGCAGAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38 Consensus pattern (6 bp): TGCGAT Left flanking sequence: Indices 18474197 -- 18474696 TGGAAGATGAAAATGGAAAAATTGGAATAGAAAAAAAAAGAAAAAAGCCCGATAGCAAGTTTAGA GTTTAGAACTTTATTTCAGAAACTCAAATAAAAAGATCAGCGCTCGCACGTGGTTTCAGAATGTC TCTTTTCGTTTTGATCTCCAAAAATGCGGGAGAAGAGACGAAGAGTTCTCAACTGATTTTGCATG GTTAAGAACGTGCCCACGTCACATTTTTGTGGGCGAAAAATTCCCGCATTTTTCGTAGATCAAAT CATAATAGGGTATGGCGGGGCTCACTGCTGTCTTCCATTAGTGTATGGTCCTGTAGGAAACTGCA ACTGTAGGAAATGAAAGCTTTATTCCGAATATCTTGCCTAAATCTTCCCATCGCCTCCAACATGC GAGCTTCTCACTGTATTCGGCTTCTGCTCTATATTGAAAAACTCCAAAGTTGCGTGCCGATAAGG TGTGTGCACAATGAGCATAGTCAGTGTTGACAAGATCCCATGAAA Right flanking sequence: Indices 18474710 -- 18475209 AGCGCAGAATTGTTCGCAGCTGGATTTTTTTTTTTTGGTTTTTGGCTCAATAGTCCGCGATACAT ACCTTGATTATAGTAGTCCAGATAGACGGCTAGAATGATATAGGCTACTGGGATGGATATGAAAA CCAGTGGAATAAACACCTGAATGCATAGAGCTACAAAAAATTGCTTCTGGAGACGATTTGTGGCC TGGGATTGGGATACGGTGTGGTAGAGGAACCATGAGATTCGGATGACGAAAAATAGAATTTGAGG GAAGATTAATGCGAACATAAAGGCAAAGCACAGGCTTGGTAATGTTTTGTCGATTGATAGGACTA TGAAATCCGGCCGCGCAGGTACTTCGCCAGGCATGCACGGGATCGTCTGAAATTTGCTAGTTAGA ATTTGAAGGCAGCGTCAAGACAGTGTGTGCCTACTAGGTCTTCCATGAAGGCGAGGTCACACTCA ATGAACAGCGGCCGACGCTGCGCGGGACCTCGCGCCACTATACTT Found at i:18478206 original size:6 final size:6 Alignment explanation
Indices: 18478146--18478265 Score: 150 Period size: 6 Copynumber: 19.8 Consensus size: 6 18478136 AGTGTAAGCC * * * * * * 18478146 GTATAT GTATAAT TTAAAT GTATAGT GT-TAT ATTTAT -AATAT GTAAAT 1 GTATAT GTAT-AT GTATAT GTATA-T GTATAT GTATAT GTATAT GTATAT * 18478194 AGTATAT GTATAT GTATAC GTATAT GTATAT GTATAT GTATAT GTATAT 1 -GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT 18478243 GTATAT GTATAT GTATAT GTATA 1 GTATAT GTATAT GTATAT GTATA 18478266 GGCCAAAAAT Statistics Matches: 97, Mismatches: 12, Indels: 10 0.82 0.10 0.08 Matches are distributed among these distances: 5 5 0.05 6 80 0.82 7 12 0.12 ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47 Consensus pattern (6 bp): GTATAT Left flanking sequence: Indices 18477646 -- 18478145 CAATGGACTGAAATTTTAAATTTCCTGCAAGAAACAAACTGAATATTCAAAATTTTCGTAAAAAA CAGGCCAAAATTTCAAATTTCCTGTCAAAAATTGACTGGCGGAATCAGAAATTTGTGCTTGTTAA TTCCAAAAATGTGTCTAAAATTATCGTTCTGGTCAAAAATCAGTTGAAAAATTGAAATTCACTCA ACAAGAGGCTGAAGCTGAAACCGAAAATTTTTTAGTCCTCGCCGTCACCATCCTAATCTTCTTCG AGGACCGCTACTTCCGGCTCACCAAAGGCCCGACGGCGGGCTCGCGGAGTTGGAAACGTGTATTC TACGTTGTCTTACACTATTTTCTATCAGTCACGTTTATTGCTCCAGCGTACTATAACAAGATGGA CCAGCAATTGGGGAGGCAGCTTATAAAGCAGGTAGGTAGGCGGTGGGTAGGCGGCCTGGTTCGGC TTGTTTCCCGTTCACCGGTAGTATGTTAGCCAAATAGTGTAAGCC Right flanking sequence: Indices 18478266 -- 18478765 GGCCAAAAATCAACCGCCTCAGCCCATGGAATTTGATCTACCATAACTTTCAGCTAATCCCTTGC ATCCCCGCCGAAGTGCCTGCTCGGCCGGATTTCATAATTTTAGACACTGACAAAACTCTAACATG CTGGTGCGTCGGCCTTATGTTTGTGTTCTTATTCCCACAAGTTATATTCTTCGTATTTCAAATTT CCTGGTACCTCTACCACACCGTATCCCAGTCCCAAGCCACAAATCGCCTCCAGAAGCAATTTTTC GTGGCCCTATGCATTCAGGTATTCATACCATTTGCTCTGTTGTGCTTCCCAGTGATTTATATTAT TTTTGCAATTTATTCGGGCTATTATAATCAAGGTATCTAAGTCACATTTTGTCGAGTTCAAACCA ACAAAAAAAGTAATTTCCAGCTGCAACAAATGTCGCACAAATTGCGGTATCATGCCATGGCATCC TCTCAACATTGACTATGCTCATTGTGCATAAACCTTATCGGCAGG Found at i:18483106 original size:1 final size:1 Alignment explanation
Indices: 18483079--18483092 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 18483069 GTCAGTTTAG 18483079 TTTTTTTTTTTTTT 1 TTTTTTTTTTTTTT 18483093 GATCCAAATT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 18482579 -- 18483078 GACCCCAACAAACGAGATACCCAGGTAAACCTGGACACTTGTTGGGATCCCCAGAAGCAGGGATA TTCCTAGTGGGTACCCCGCGCAAATCGGGAGCGTCAGGACCGGAGCGGCTATCAAACTATAGTAG ACGTCTAGAATTGCTCCGGCAAAGTGGAGAAAGAGCAGGCCACGCTTGACGGATTGCATTTTGCT CGGGGTCTTCGTGATGATGATATAAGCCCCAAAAATGTGAATAGGAATCTCGATTGCTGTGAGAA CATGTAGCGTTGAGGAGTAGAAAGTGTCGGAGCCAAAATAATTGAGCGCGGGGAGTTCGGAGCAC ATTATTTTATGAGTGGAGAGAGGGGGGTTGAGTGGAAATAATAATGAGCTTTTGGGGAAAAGTTT TCAGCTGCGGAGCATGGGTTTGATCGGTCAGAAGCTTGAGTGTTGATATTTTGATATAATGGTTA TTGAATTAATAAGTTAGAGAGTTGAGCTTTATGACGTCAGTTTAG Right flanking sequence: Indices 18483093 -- 18483592 GATCCAAATTTTTTAGAGAAATGTTTGGCAATTTAGATGATAATCTTGTAAATTATATCCTGTTT TATCTGGTCTGAAATTTTCAGCTCATATGGAGCATTCTCCGCCGAGTTATGGCGGGGGACGAGTT TTGGGTTTCTAGGCCACCAACTTTAGAGCGATGTAACTCGGCGAGAAACTGCTCGTTTTGACTGA AAATTTCTCTTTGTTTTGAATAATTTATTCTGCACTGAATTTGGAAGCCAATTTACAAATTTTAA GATTTTTTTTCGAAGTTTGGAATTTTTAAATTTTTGTTCAAAATTTTGACAACTACCGAAAAATA AATTTAAATGAAAAATGCTTGAATAATTTGATGGCCAGCTTGTTCCTCTTTTCCCTCGAAAAATT TCAGCCAAATTGAAGCATTTACAGCCGAGTTACGATGGGGGACGAGTTTCGGGTTTCTAGGCCAC CAACTTTAGAGCGATGAAGCTCGGCGAGAAACTGCTCGTTTTGAC Found at i:18486347 original size:1 final size:1 Alignment explanation
Indices: 18486315--18486329 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 18486305 AAATTGAAAA 18486315 TTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTT 18486330 AAATTTTCGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 18485815 -- 18486314 GAATTAAAATAAAAAATTTCCGAATTTTTAACATTATTTTTTGAATTTTTTTTGGATTTTTTGAA TAAAAAAATTTTTCGTATTTTTTGAATTTTTTGCAATTATTTTTTAGAATTTAGGAAAAAATATT TACAAATTTTTTAAAGCAATTTTTGAAAAAAAAACATTCGATTCTTTAGTAATTTACCTGAAAAG TTAGAAATTTCGAATACTTACTAACTGTACGCCAGCACAATTGTGGTAATTGCCAATTTCGGCGT CACAAACAGATGATAGTAGGAAAATTTCGTTTTTCGAGTGTTTTGAGCTTGGGTTTTCTGCAAAT TTTGAAAATTTTTGGCAATTTTTTTAAAGTGGTTTACCGCATATTCCATCCGCAAGTTTTCTTCA AAATCTTCGTGGATTAGGTTTTCCTGGTTGGAGGTTTTAAGTTGGCGTTGGAGGACCTGAAATTA TTGGTTTTGAAAAAAATAATTGAAATTTGTAAAAAAAATTGAAAA Right flanking sequence: Indices 18486330 -- 18486829 AAATTTTCGAAATTTTTTATTCAAAATTTTTTAAAAAAATATTCACGAACTACTGTAACCTTTAC TTAAACTTTTTTTAAACTTTTCAGAGAAAGAAACACACTTCCAACCAAAAAAAAAATCACCAAAG CTCACCTGCACGGCTTCGCTGATTTTGCCACGTGTCACAAGCCATCTCGGCGACTCGTGGATGAA AAATTGGAAGAACAAGATTCCCGGAATACACATGAACGCGTTGATGTAGGCTAAGCTTTTCCAGT CGCTGGCTAACCTAAAATTTCAAAAAAAAATTTTCGATTTTTTTTTTCCAAAATTTCGAAAAAAT TTTATTTTGATTTGGTTAGCATTAAAATTGCAAATATACGGCTAAAATTTCAGCCAAATCCGTCA AATTCCAACCCAGTTACAACAGTTTTAGATTGATGGCCTAGAAACCCAAAACTCGTCCGCCGCCA TAACTTTGCGGGAAATAGTCGGATTTTGTTGAAACTTTCAGGACT Found at i:18488184 original size:6 final size:6 Alignment explanation
Indices: 18488173--18488186 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18488163 ATTTTTGCCC 18488173 ATTCTG ATTCTG AT 1 ATTCTG ATTCTG AT 18488187 GCCGTATCAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50 Consensus pattern (6 bp): ATTCTG Left flanking sequence: Indices 18487673 -- 18488172 ACGGAAATTGAATTTTTCACCAGTTTTGAAGTATTGCAGAAATAGTTGTACTGAAATTTTTTTTT TCGAATTATCGATTTCTGGCAATTTTCTCCAAAAAAATTTCTTACCTCCACATTAATACTCCTAA ACTGGTACTGAAACTCGGGATGTGAGCAATTTCCCATTTTATCCAGCTCAAAGCATATTTCCTTG CCCTCCAGAAGACTGTCGAATACGATATTGTCGCAGGAGATGACACGTGGCGCCGCACCTAAAAA TATTGATTTTTCTGGTTTTGAAATAATTTTAGGAACATTGGTTTTGCAATTTTAAAATGAAAAAT GTCAATAATTTTTATCAAATTCTGAAAAAAAAAATTTCAGTGAAATTTTATATTTTTTTCGGATT TTTTATCTAACTAGGGAATGACCAGAATAAGTGGAGCGATATTCAAAAAAAAAAATTGTATCGGA AAGCTGACTTTCTCTACTATAAGAATATGACTGAAATTTTTGCCC Right flanking sequence: Indices 18488187 -- 18488686 GCCGTATCAAGACGTTTTACAAAATCGATATTGGAAAAACACCTTGTTTTTGAGACTCCATATCT CTGCAGGAAAAAATCGCACTAAAAAGTGATCAACTGAAAACTTGTTAAACACAATGTGATCTGAA ACTTTTCAGTTGAACACTTTCTTGTAAAAAATTTGGTTGCCAAGATATAGACCTTTAACTATTTA AAATATTCAAAAATAATGAAGCTCAAATCAATTGGTCCCAACTCGGCAACCAAATTTTTTAAAAG AAAGTGTTTTACTGAAAAGTTTTAGATTACATTATGTTTAACAAGTTTTTAGTTGATCACTTTTT AGTGCGATTTTTTCCTGCAGAGATATGGAGTCTCAAAGACAAGGTGTTTTTCCAATATCGATTTG GTAAAACGTCTTGATACGGCATCAGAATCAGTGATTCGGTCATTGAAAACAATGAAAAATAAGTT ATTTGTGACACTCTACATTATTTCATACATTTTTGAAAAAATTTC Found at i:18489028 original size:5 final size:5 Alignment explanation
Indices: 18489018--18489030 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 18489008 ATTTCGAAAT 18489018 ATAAA ATAAA ATA 1 ATAAA ATAAA ATA 18489031 TATACAATGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (5 bp): ATAAA Left flanking sequence: Indices 18488518 -- 18489017 ATTTTTTCCTGCAGAGATATGGAGTCTCAAAGACAAGGTGTTTTTCCAATATCGATTTGGTAAAA CGTCTTGATACGGCATCAGAATCAGTGATTCGGTCATTGAAAACAATGAAAAATAAGTTATTTGT GACACTCTACATTATTTCATACATTTTTGAAAAAATTTCAAAAAAAATTTTTGGATCAAATTTTC GCATGGGTTTGGTGGAGAAAAAAGTGGCAATTTTCGAAAAAATAAAAATTTCTGAAAAGTTTCCA GCCCGAATGGGCAAAAATTTCAGTCATATTCTTATAGTAGAGAATGTCAGCTTTCCGATACAATA TTTTTTTTTTGAATATCGCTCCACTTATTCTGGTCATTCCCTAGTAAGATTTCCTTAAATATTTT TCTAGTAAATACTGATTTTTTATGAAAATTTTCTAGATTTTTCTACAAAAACTTAAATTTCGAAA ATATTCGAAAAAAAAATAAATTTCGAAAATAATATATTTCGAAAT Right flanking sequence: Indices 18489031 -- 18489530 TATACAATGTAAAAATTGGAAAAGCTTAATAAAAGTAATTTTTAATGTTAACATTTCTAAGATTT TCTGATTTTTTTTAACTTGTGAAAAAATTCTAGAATGTTCCTGAAAGTTACCTAAACTTTTTAAA ATTTTCTGAAAAATGCTCATAAATTTCTTTACATGTTCGGTTTTTTTTTGTTTTTGCAACAATTC CTAATTTTTTAATTTTTTCAGTTTCAACAGCTATCTAAAATATTATGAATTTTCCAAAAATTTTA AGATAACTTTTTTAACAATTTCTAAAAAATTTAGAACTTTCTAAACTTTTCTGAAAATGTTTTTA AAAAAATTTTCTAGAACATTTTTAAATTTCTGGAAATTTTTTTTAAAAACATTTAAATTTATTTA AATTTCAACAATTTTCTAAAATTTTCAAGAGTTTTGCAGTCTCAAAAAAAAATCAATACCTGCAT ACATCATATAAAACATAGACGATACTTGCGGTAAAATCAATAATT Found at i:18489216 original size:6 final size:6 Alignment explanation
Indices: 18489201--18489216 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 18489191 ACATGTTCGG * 18489201 TTTTTT TTTGTT TTTG 1 TTTGTT TTTGTT TTTG 18489217 CAACAATTCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88 Consensus pattern (6 bp): TTTGTT Left flanking sequence: Indices 18488701 -- 18489200 GATCAAATTTTCGCATGGGTTTGGTGGAGAAAAAAGTGGCAATTTTCGAAAAAATAAAAATTTCT GAAAAGTTTCCAGCCCGAATGGGCAAAAATTTCAGTCATATTCTTATAGTAGAGAATGTCAGCTT TCCGATACAATATTTTTTTTTTGAATATCGCTCCACTTATTCTGGTCATTCCCTAGTAAGATTTC CTTAAATATTTTTCTAGTAAATACTGATTTTTTATGAAAATTTTCTAGATTTTTCTACAAAAACT TAAATTTCGAAAATATTCGAAAAAAAAATAAATTTCGAAAATAATATATTTCGAAATATAAAATA AAATATATACAATGTAAAAATTGGAAAAGCTTAATAAAAGTAATTTTTAATGTTAACATTTCTAA GATTTTCTGATTTTTTTTAACTTGTGAAAAAATTCTAGAATGTTCCTGAAAGTTACCTAAACTTT TTAAAATTTTCTGAAAAATGCTCATAAATTTCTTTACATGTTCGG Right flanking sequence: Indices 18489217 -- 18489716 CAACAATTCCTAATTTTTTAATTTTTTCAGTTTCAACAGCTATCTAAAATATTATGAATTTTCCA AAAATTTTAAGATAACTTTTTTAACAATTTCTAAAAAATTTAGAACTTTCTAAACTTTTCTGAAA ATGTTTTTAAAAAAATTTTCTAGAACATTTTTAAATTTCTGGAAATTTTTTTTAAAAACATTTAA ATTTATTTAAATTTCAACAATTTTCTAAAATTTTCAAGAGTTTTGCAGTCTCAAAAAAAAATCAA TACCTGCATACATCATATAAAACATAGACGATACTTGCGGTAAAATCAATAATTCTGCGGCCAAG CACACCAGGAGCACATACTTGCCCATTTGAATATAGTCGTCGAGCCCGTGCACTTGCTCGGGCTC TTTTTCCAGAAATTCCAGTTTTGCTCCATTTTCAGGAAGATTTATAGAGTCTTCTGATGAATTAC TCGACGTAGAAGACATTAAAATAATAGTATTCGTAGTTTAAAAAT Found at