TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:1868192 original size:8 final size:8 Alignment explanation
Indices: 1868179--1868206 Score: 56 Period size: 8 Copynumber: 3.5 Consensus size: 8 1868169 CAGTTTACAA 1868179 ACAAGTTT 1 ACAAGTTT 1868187 ACAAGTTT 1 ACAAGTTT 1868195 ACAAGTTT 1 ACAAGTTT 1868203 ACAA 1 ACAA 1868207 ACAGTTTAAA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 20 1.00 ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32 Consensus pattern (8 bp): ACAAGTTT Left flanking sequence: Indices 1867679 -- 1868178 GATTTCTCAGTGGAAACATTTTTCAGACGTCTTTTCGCTTTTGTTTCTCTCACGGCCTCCTGGAG TGCTCATAATTATTGGAGCGCGCCCTCGCGGCACCTCACGAACTCCAGAATTCGCGGGAATTCGT TTCGCGCGGGGACAGCAGTTTTTGGCTATTTTTGGCTTCTATGGAAATTATTTTTAATTTTTTGA TTTATAATATTGTTGAGAAGCATCATACGAATCGAAAATTTGTAAAATTATGAAATTTGACCGAA AACTGAAGATTTTACACAAAGGATTCATTACAGTCTTGTAAAAATGTATCAGGATCGTCAGTTTT TCGATTTATGTGCAGTAAAGCATGTCATTTTGTAGAGAAAAGTCTGTTGCACAAAAATCCATGTT TGAAATTCTAATTATTTAATTTATAATGTAAAAATACTCAAAAAATCATTAATTTCAGGTTAAAA TCTTATTTTTACGATTTTTCAGTATTTAATAAAAACAGTTTACAA Right flanking sequence: Indices 1868207 -- 1868706 ACAGTTTAAAAACAGAAAACAGAACGGCAAATTCAGTAAATATGCCGCACCTAATAAATTGCCCA TTTTTGCCACTTTTTAATAGTTTTTGATGGGTTAAACCTAGATTTTCTGAATTCAGCATATATAA AAATTTCACAGAAAATAGAAAAAGACAACAAAAAATTCAAGTTTGCCTGTTTTTGTACTTTATCA AATTAGAGAAATTCCTTGAAATTTTTTTTCCGGATATATAAATTGAAAGAGAACGTCATTTAACA AGTGTTGGCCTATTCTTATTTTTGACAATCAACCATATTACGGAATTTCAAGAAATTTTGCTGTT TTTTCTTATTAAGTCTCCAAATAAGTTCCGGGTCAAAAATCATAACTTTTTTTGCCTTTCATAGA TTTTTTTGAAACTTTGGGAATTCATGTTATCAACTATGACCTTTTATTTTGAAATGGTCACAAAA TTTTTTGACCACCCGGAGTGCCCTAACTCGAAGCCATTTTTTCAG Found at i:1868227 original size:7 final size:7 Alignment explanation
Indices: 1868215--1868230 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 1868205 AAACAGTTTA 1868215 AAAACAG 1 AAAACAG 1868222 AAAACAG 1 AAAACAG 1868229 AA 1 AA 1868231 CGGCAAATTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.75, C:0.12, G:0.12, T:0.00 Consensus pattern (7 bp): AAAACAG Left flanking sequence: Indices 1867715 -- 1868214 GCTTTTGTTTCTCTCACGGCCTCCTGGAGTGCTCATAATTATTGGAGCGCGCCCTCGCGGCACCT CACGAACTCCAGAATTCGCGGGAATTCGTTTCGCGCGGGGACAGCAGTTTTTGGCTATTTTTGGC TTCTATGGAAATTATTTTTAATTTTTTGATTTATAATATTGTTGAGAAGCATCATACGAATCGAA AATTTGTAAAATTATGAAATTTGACCGAAAACTGAAGATTTTACACAAAGGATTCATTACAGTCT TGTAAAAATGTATCAGGATCGTCAGTTTTTCGATTTATGTGCAGTAAAGCATGTCATTTTGTAGA GAAAAGTCTGTTGCACAAAAATCCATGTTTGAAATTCTAATTATTTAATTTATAATGTAAAAATA CTCAAAAAATCATTAATTTCAGGTTAAAATCTTATTTTTACGATTTTTCAGTATTTAATAAAAAC AGTTTACAAACAAGTTTACAAGTTTACAAGTTTACAAACAGTTTA Right flanking sequence: Indices 1868231 -- 1868730 CGGCAAATTCAGTAAATATGCCGCACCTAATAAATTGCCCATTTTTGCCACTTTTTAATAGTTTT TGATGGGTTAAACCTAGATTTTCTGAATTCAGCATATATAAAAATTTCACAGAAAATAGAAAAAG ACAACAAAAAATTCAAGTTTGCCTGTTTTTGTACTTTATCAAATTAGAGAAATTCCTTGAAATTT TTTTTCCGGATATATAAATTGAAAGAGAACGTCATTTAACAAGTGTTGGCCTATTCTTATTTTTG ACAATCAACCATATTACGGAATTTCAAGAAATTTTGCTGTTTTTTCTTATTAAGTCTCCAAATAA GTTCCGGGTCAAAAATCATAACTTTTTTTGCCTTTCATAGATTTTTTTGAAACTTTGGGAATTCA TGTTATCAACTATGACCTTTTATTTTGAAATGGTCACAAAATTTTTTGACCACCCGGAGTGCCCT AACTCGAAGCCATTTTTTCAGGCATTTTTCTGATCTCGCTTCTTT Found at i:1868985 original size:9 final size:9 Alignment explanation
Indices: 1868967--1868988 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 1868957 GGATCTCGAG * 1868967 AAATACTCA 1 AAAAACTCA 1868976 AAAAACTCA 1 AAAAACTCA 1868985 AAAA 1 AAAA 1868989 TTCTTCGAAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.68, C:0.18, G:0.00, T:0.14 Consensus pattern (9 bp): AAAAACTCA Left flanking sequence: Indices 1868467 -- 1868966 AGTGTTGGCCTATTCTTATTTTTGACAATCAACCATATTACGGAATTTCAAGAAATTTTGCTGTT TTTTCTTATTAAGTCTCCAAATAAGTTCCGGGTCAAAAATCATAACTTTTTTTGCCTTTCATAGA TTTTTTTGAAACTTTGGGAATTCATGTTATCAACTATGACCTTTTATTTTGAAATGGTCACAAAA TTTTTTGACCACCCGGAGTGCCCTAACTCGAAGCCATTTTTTCAGGCATTTTTCTGATCTCGCTT CTTTGCAGCTTTGAATTGAGGTTTGTGTGCGGATTTTACTTTGTTTAGAATACATCGTAAGAAAT CAACAAAAGTTTGAAAAAAAATCCGTCCAAAAAAATGTTTTTTGGTCGGTCGTCAAAAAACTTCA AAAAAAATTTTTTTTCGAAAGTTTTTGATTTTTAGTATAAAAATGATGTAACCATGTGTAAACTA TTTTTAAACATACAAAACATTTGAGTTTGAAATTTGGATCTCGAG Right flanking sequence: Indices 1868989 -- 1869488 TTCTTCGAAAAAATTATGTTTTCTATTATCATTTGAGTGTGACGAACTTAGTTAAAATGTTTTGT TTCATAAAAATTGATACGCAGCGAGCAAAGTTATCAATTTTGACCCGGAACTTATTTGGAGACCT AATATTTGAAAGTTATTTTCTCTCTCAACTCACAATTATTGCCACCTGCTGCACTTCTCTGTCGT CTATCAAGCTCTTCCTCTCTCATTCGGAGCTCCTGAGCACGGCGCTCCAAATCTTGCTGTTTTCT GAACAATTCATCGTCCATTCCGGCGGATTTGTTGCCCAGTGAGCCGGTTGACTGCAAAAAAAAAC GAAATTATTTGGAAAAAAAAATTGAATTTCTGCTATTTATTCCAAAAATCGGCAATTTTCAGCGA AAAATTAACAATTTTTGAAAAAAAAAAATTAGAAATTTTCAAAAAAATTGAACTAATCTTATCAA TTCCGAGATTTTTTGTACCATTCTTCGAAATTTCATTTAAAAATT Found at i:1870320 original size:11 final size:10 Alignment explanation
Indices: 1870298--1870317 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 1870288 TTTGCGAGTT 1870298 TTTTTTTGAA 1 TTTTTTTGAA 1870308 TTTTTTTGAA 1 TTTTTTTGAA 1870318 ATTATTAAAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70 Consensus pattern (10 bp): TTTTTTTGAA Left flanking sequence: Indices 1869798 -- 1870297 TCAAAAATTGTTAATTTTTTGCTGAAAACTATTATAATAATAGTATTATTACCGATTTTCGAAGT AAAATTCATTTTTTTACCTCAGAAATTTAAGGCCAAAAATTGTATTTTTCGAGAATTTTCAGCAA AAATTTTTTTTTGAATGAAATTTCGAAGATTTCATGTCAAAATGGTCATTTTTTGCAAATTCGGG ATGAAAATTCCTAAATTTTCGAGAAAAACAGCTAGAAATTGATGGTTTTGATAGATTTTCTCAAT TTTTTGTTTAAATTTCAGAGGTTTTTTCACTAAATCCTACAGAAAATCAAAAAAAATTTTTTTTT TTCAAAACAATCAATTTTAATTACGACTTGCTATTTTTTGTAATTTTTCTCTGAAAAAAAAAACC CATTTTCTCACAATTTTTGTACTAAAAATGCCTTAAATGGGCCGTTTTTTTTAGATTTTTAATCA AAATTTGGATTTTTTTCAAAAATTTTAATTACTACTTTGCGAGTT Right flanking sequence: Indices 1870318 -- 1870817 ATTATTAAACTTTTTAAAAACTGACTTATTTTTTAAATAAAAATGATGAAAATCTCCGTCTTAAT TTTGAAAAATTCGTATAGAAATATTGATTTTTTGCAAAAAATGTAATTTTTCCCCCGAAAACCCA TTTTTTGACGATTTTTTTTATTGAAAAAATTTCTAAAATCGGCCGGTTTTTAGATTTTAAATAAT TTTCCCTAAAAAATGTAATTTTTCCGAAAAAACCCATTTTTTCACAATTTTTGAACTAAAAATGT CTAAAATCGGCCTTTTTTTTCAGATTTTTAATCAAAATTTGGACTTGTTTTTTCCAAAATTTTAA TTCCGACTTTGCGAATTTTTTTCAATTTTTAGAAGTAAAAAAACGGCAAAATTTGACTAATTTTT CAGAAAAATGGCAAAAATTTCTGTTTTAATTCAAAAAAAATCGGAAAAAATTATATATTCCCTGC AGAGAAATATATCTGTAAGAACTAATAAAAAAAAAAGAAGCGCAA Found at i:1870828 original size:9 final size:9 Alignment explanation
Indices: 1870814--1870831 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 1870804 AAAAAGAAGC 1870814 GCAAAAAAA 1 GCAAAAAAA 1870823 GCAAAAAAA 1 GCAAAAAAA 1870832 AGCACATTCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.78, C:0.11, G:0.11, T:0.00 Consensus pattern (9 bp): GCAAAAAAA Left flanking sequence: Indices 1870314 -- 1870813 TGAAATTATTAAACTTTTTAAAAACTGACTTATTTTTTAAATAAAAATGATGAAAATCTCCGTCT TAATTTTGAAAAATTCGTATAGAAATATTGATTTTTTGCAAAAAATGTAATTTTTCCCCCGAAAA CCCATTTTTTGACGATTTTTTTTATTGAAAAAATTTCTAAAATCGGCCGGTTTTTAGATTTTAAA TAATTTTCCCTAAAAAATGTAATTTTTCCGAAAAAACCCATTTTTTCACAATTTTTGAACTAAAA ATGTCTAAAATCGGCCTTTTTTTTCAGATTTTTAATCAAAATTTGGACTTGTTTTTTCCAAAATT TTAATTCCGACTTTGCGAATTTTTTTCAATTTTTAGAAGTAAAAAAACGGCAAAATTTGACTAAT TTTTCAGAAAAATGGCAAAAATTTCTGTTTTAATTCAAAAAAAATCGGAAAAAATTATATATTCC CTGCAGAGAAATATATCTGTAAGAACTAATAAAAAAAAAAGAAGC Right flanking sequence: Indices 1870832 -- 1871331 AGCACATTCTCTCTTCTTTCGATTAATCAATACGTTGCAGTGCTCCGGCATTAAGGAGCCCTTCT TTTTCTTCTATAAAATAGAGAAAAAGCCGAGACCTGATGAGTGGTTGGTTGAGCATTTGAGCCGC CGGCTCTATTCGCGAATGGATTGAAATCTTCTGTTTCAATTGTACCTCCTGAAGTGGGTTTTGAT GCTGCTGCTGCTGCTGCTGGCGGTGGTGGTGGAGCCTAGAAATTGATTTTTAGGCGTAAAAATTC CGAAAATTCAAAATTTCAAATAGAAATCTCTTTTTTAAAAGAAATTCTTGAAAATTCAGATAAAA ATTTTTTTTTTTTGAAAATTTACCAATTCGGCATATTTTTTTCAAAAGTGGAGTACTTAAATCTG GGAAATATATTTAATTGACTCCAAATTTTGCCCTGATTCCGAATATCGATGTGAAAAAATTCAAA AATTCAAAAAAATTTCCCATGATTTTATATTTAAGCTTGAAATCG Found at i:1870831 original size:10 final size:10 Alignment explanation
Indices: 1870804--1870835 Score: 41 Period size: 10 Copynumber: 3.1 Consensus size: 10 1870794 CTAATAAAAA * 1870804 AAAAAGAAGC 1 AAAAAAAAGC * 1870814 GCAAAAAAAGC 1 -AAAAAAAAGC 1870825 AAAAAAAAGC 1 AAAAAAAAGC 1870835 A 1 A 1870836 CATTCTCTCT Statistics Matches: 18, Mismatches: 3, Indels: 1 0.82 0.14 0.05 Matches are distributed among these distances: 10 10 0.56 11 8 0.44 ACGTcount: A:0.72, C:0.12, G:0.16, T:0.00 Consensus pattern (10 bp): AAAAAAAAGC Left flanking sequence: Indices 1870304 -- 1870803 TGAATTTTTTTGAAATTATTAAACTTTTTAAAAACTGACTTATTTTTTAAATAAAAATGATGAAA ATCTCCGTCTTAATTTTGAAAAATTCGTATAGAAATATTGATTTTTTGCAAAAAATGTAATTTTT CCCCCGAAAACCCATTTTTTGACGATTTTTTTTATTGAAAAAATTTCTAAAATCGGCCGGTTTTT AGATTTTAAATAATTTTCCCTAAAAAATGTAATTTTTCCGAAAAAACCCATTTTTTCACAATTTT TGAACTAAAAATGTCTAAAATCGGCCTTTTTTTTCAGATTTTTAATCAAAATTTGGACTTGTTTT TTCCAAAATTTTAATTCCGACTTTGCGAATTTTTTTCAATTTTTAGAAGTAAAAAAACGGCAAAA TTTGACTAATTTTTCAGAAAAATGGCAAAAATTTCTGTTTTAATTCAAAAAAAATCGGAAAAAAT TATATATTCCCTGCAGAGAAATATATCTGTAAGAACTAATAAAAA Right flanking sequence: Indices 1870836 -- 1871335 CATTCTCTCTTCTTTCGATTAATCAATACGTTGCAGTGCTCCGGCATTAAGGAGCCCTTCTTTTT CTTCTATAAAATAGAGAAAAAGCCGAGACCTGATGAGTGGTTGGTTGAGCATTTGAGCCGCCGGC TCTATTCGCGAATGGATTGAAATCTTCTGTTTCAATTGTACCTCCTGAAGTGGGTTTTGATGCTG CTGCTGCTGCTGCTGGCGGTGGTGGTGGAGCCTAGAAATTGATTTTTAGGCGTAAAAATTCCGAA AATTCAAAATTTCAAATAGAAATCTCTTTTTTAAAAGAAATTCTTGAAAATTCAGATAAAAATTT TTTTTTTTTGAAAATTTACCAATTCGGCATATTTTTTTCAAAAGTGGAGTACTTAAATCTGGGAA ATATATTTAATTGACTCCAAATTTTGCCCTGATTCCGAATATCGATGTGAAAAAATTCAAAAATT CAAAAAAATTTCCCATGATTTTATATTTAAGCTTGAAATCGCCGA Found at i:1871295 original size:7 final size:8 Alignment explanation
Indices: 1871276--1871296 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 1871266 ATCGATGTGA 1871276 AAAAATTC 1 AAAAATTC 1871284 AAAAATTC 1 AAAAATTC 1871292 AAAAA 1 AAAAA 1871297 AATTTCCCAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19 Consensus pattern (8 bp): AAAAATTC Left flanking sequence: Indices 1870776 -- 1871275 GAAATATATCTGTAAGAACTAATAAAAAAAAAAGAAGCGCAAAAAAAGCAAAAAAAAGCACATTC TCTCTTCTTTCGATTAATCAATACGTTGCAGTGCTCCGGCATTAAGGAGCCCTTCTTTTTCTTCT ATAAAATAGAGAAAAAGCCGAGACCTGATGAGTGGTTGGTTGAGCATTTGAGCCGCCGGCTCTAT TCGCGAATGGATTGAAATCTTCTGTTTCAATTGTACCTCCTGAAGTGGGTTTTGATGCTGCTGCT GCTGCTGCTGGCGGTGGTGGTGGAGCCTAGAAATTGATTTTTAGGCGTAAAAATTCCGAAAATTC AAAATTTCAAATAGAAATCTCTTTTTTAAAAGAAATTCTTGAAAATTCAGATAAAAATTTTTTTT TTTTGAAAATTTACCAATTCGGCATATTTTTTTCAAAAGTGGAGTACTTAAATCTGGGAAATATA TTTAATTGACTCCAAATTTTGCCCTGATTCCGAATATCGATGTGA Right flanking sequence: Indices 1871297 -- 1871796 AATTTCCCATGATTTTATATTTAAGCTTGAAATCGCCGAATTTCATTTGTACCAGCATCACTTTT TTAAATACGCGCCAAAAGAAATTCGCATTGGAGCGCGCTTTGATTTTCTTAATTTAAATATTTTA TTTATTTTTCGCCGAATTCAGTTTTTTAAAACCATTTTCATTCATTTTTGTCGAAAAAAAAACCG AAAAAAACTCGAGAAAAATCAATAAAACTGGTTTAAAAAAAAACCGAATTCGGCGAAAAATGAAT GAAATAATTTAATTTAAGAAAATCAAAGCGTGCTCCAATGCGAATTTCTTTGGGCGCGTATTTAA AAAAGTGATGCTGGTACAAATGAAATTCGGCGATTTCAAGCTTAAATATAAAATAAGGGAATTTT ACAGAACAAATTCCGGAAAATTCAGATTTTAAAATTTTTTTGAAACAGAATATTGGAAGCTCTTG TGAATTCTGGTAAAGCCTGGAAATTTTTTTTCGAAAATTTATTTT Found at i:1871426 original size:9 final size:9 Alignment explanation
Indices: 1871414--1871434 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 1871404 ATTTTCTTAA 1871414 TTTAAATAT 1 TTTAAATAT ** 1871423 TTTATTTAT 1 TTTAAATAT 1871432 TTT 1 TTT 1871435 TCGCCGAATT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (9 bp): TTTAAATAT Left flanking sequence: Indices 1870914 -- 1871413 GAGAAAAAGCCGAGACCTGATGAGTGGTTGGTTGAGCATTTGAGCCGCCGGCTCTATTCGCGAAT GGATTGAAATCTTCTGTTTCAATTGTACCTCCTGAAGTGGGTTTTGATGCTGCTGCTGCTGCTGC TGGCGGTGGTGGTGGAGCCTAGAAATTGATTTTTAGGCGTAAAAATTCCGAAAATTCAAAATTTC AAATAGAAATCTCTTTTTTAAAAGAAATTCTTGAAAATTCAGATAAAAATTTTTTTTTTTTGAAA ATTTACCAATTCGGCATATTTTTTTCAAAAGTGGAGTACTTAAATCTGGGAAATATATTTAATTG ACTCCAAATTTTGCCCTGATTCCGAATATCGATGTGAAAAAATTCAAAAATTCAAAAAAATTTCC CATGATTTTATATTTAAGCTTGAAATCGCCGAATTTCATTTGTACCAGCATCACTTTTTTAAATA CGCGCCAAAAGAAATTCGCATTGGAGCGCGCTTTGATTTTCTTAA Right flanking sequence: Indices 1871435 -- 1871934 TCGCCGAATTCAGTTTTTTAAAACCATTTTCATTCATTTTTGTCGAAAAAAAAACCGAAAAAAAC TCGAGAAAAATCAATAAAACTGGTTTAAAAAAAAACCGAATTCGGCGAAAAATGAATGAAATAAT TTAATTTAAGAAAATCAAAGCGTGCTCCAATGCGAATTTCTTTGGGCGCGTATTTAAAAAAGTGA TGCTGGTACAAATGAAATTCGGCGATTTCAAGCTTAAATATAAAATAAGGGAATTTTACAGAACA AATTCCGGAAAATTCAGATTTTAAAATTTTTTTGAAACAGAATATTGGAAGCTCTTGTGAATTCT GGTAAAGCCTGGAAATTTTTTTTCGAAAATTTATTTTTATTTTTTTTTTACGAAAATTTTAATTT TTCTCCTGAAAACTGGTTTTTTTAAAATTTTTTGGATTAAAAATGTAGAAAATCGGACAATTCCG AGTAAACTTCAAAAAAAACTGGTATTTTTCCAATTTTTGCATAAA Found at i:1871806 original size:10 final size:10 Alignment explanation
Indices: 1871788--1871807 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 1871778 TTTTTCGAAA 1871788 ATTTATTTTT 1 ATTTATTTTT * 1871798 ATTTTTTTTT 1 ATTTATTTTT 1871808 TACGAAAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (10 bp): ATTTATTTTT Left flanking sequence: Indices 1871288 -- 1871787 ATTCAAAAAAATTTCCCATGATTTTATATTTAAGCTTGAAATCGCCGAATTTCATTTGTACCAGC ATCACTTTTTTAAATACGCGCCAAAAGAAATTCGCATTGGAGCGCGCTTTGATTTTCTTAATTTA AATATTTTATTTATTTTTCGCCGAATTCAGTTTTTTAAAACCATTTTCATTCATTTTTGTCGAAA AAAAAACCGAAAAAAACTCGAGAAAAATCAATAAAACTGGTTTAAAAAAAAACCGAATTCGGCGA AAAATGAATGAAATAATTTAATTTAAGAAAATCAAAGCGTGCTCCAATGCGAATTTCTTTGGGCG CGTATTTAAAAAAGTGATGCTGGTACAAATGAAATTCGGCGATTTCAAGCTTAAATATAAAATAA GGGAATTTTACAGAACAAATTCCGGAAAATTCAGATTTTAAAATTTTTTTGAAACAGAATATTGG AAGCTCTTGTGAATTCTGGTAAAGCCTGGAAATTTTTTTTCGAAA Right flanking sequence: Indices 1871808 -- 1872307 TACGAAAATTTTAATTTTTCTCCTGAAAACTGGTTTTTTTAAAATTTTTTGGATTAAAAATGTAG AAAATCGGACAATTCCGAGTAAACTTCAAAAAAAACTGGTATTTTTCCAATTTTTGCATAAAAAA ATAAATAAAATTGGCAGATTTTTGAAATTTTTGCATTAAAAACGTGCTATTTTATACATTTTGTA ATGTAAAAATTAAAAAATTGATTTTTTTTTGAAGAATTTTGAAGAAACCACAAAAATTTTGACTA AAAATCTGAAAAACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCGGGGAAAAATTACAGTTTTT CAGGAAAATTAACATATTTTTAATAAAAAGCAAGATTTCTGTACGAATTTACCAATTTTTTTGAA ATAAACACGTTTTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAACTCACCGAAAACGGGTCGGC GAACGGATTATCTGACATTTTCCGGGTTTTTTGCTGATTTGCTAC Found at i:1871941 original size:8 final size:9 Alignment explanation
Indices: 1871930--1871948 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 1871920 CAATTTTTGC 1871930 ATAAA-AAA 1 ATAAATAAA 1871938 ATAAATAAA 1 ATAAATAAA 1871947 AT 1 AT 1871949 TGGCAGATTT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 5 0.50 9 5 0.50 ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21 Consensus pattern (9 bp): ATAAATAAA Left flanking sequence: Indices 1871430 -- 1871929 ATTTTTCGCCGAATTCAGTTTTTTAAAACCATTTTCATTCATTTTTGTCGAAAAAAAAACCGAAA AAAACTCGAGAAAAATCAATAAAACTGGTTTAAAAAAAAACCGAATTCGGCGAAAAATGAATGAA ATAATTTAATTTAAGAAAATCAAAGCGTGCTCCAATGCGAATTTCTTTGGGCGCGTATTTAAAAA AGTGATGCTGGTACAAATGAAATTCGGCGATTTCAAGCTTAAATATAAAATAAGGGAATTTTACA GAACAAATTCCGGAAAATTCAGATTTTAAAATTTTTTTGAAACAGAATATTGGAAGCTCTTGTGA ATTCTGGTAAAGCCTGGAAATTTTTTTTCGAAAATTTATTTTTATTTTTTTTTTACGAAAATTTT AATTTTTCTCCTGAAAACTGGTTTTTTTAAAATTTTTTGGATTAAAAATGTAGAAAATCGGACAA TTCCGAGTAAACTTCAAAAAAAACTGGTATTTTTCCAATTTTTGC Right flanking sequence: Indices 1871949 -- 1872448 TGGCAGATTTTTGAAATTTTTGCATTAAAAACGTGCTATTTTATACATTTTGTAATGTAAAAATT AAAAAATTGATTTTTTTTTGAAGAATTTTGAAGAAACCACAAAAATTTTGACTAAAAATCTGAAA AACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCGGGGAAAAATTACAGTTTTTCAGGAAAATTA ACATATTTTTAATAAAAAGCAAGATTTCTGTACGAATTTACCAATTTTTTTGAAATAAACACGTT TTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAACTCACCGAAAACGGGTCGGCGAACGGATTAT CTGACATTTTCCGGGTTTTTTGCTGATTTGCTACCTTAAAAATCAATATTTTAGTCGGAAAAAAG GAATTATAAACGATTTAATCCATTTATTTACGAATTTGATTCAATAAACTGACGGAACGGTGGTG ACGAAATATATTTTATAAACAAACGGGCAGAAATATGAGTCAGAA Found at i:1872044 original size:10 final size:10 Alignment explanation
Indices: 1872029--1872048 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 1872019 ATTGATTTTT 1872029 TTTTGAAGAA 1 TTTTGAAGAA 1872039 TTTTGAAGAA 1 TTTTGAAGAA 1872049 ACCACAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40 Consensus pattern (10 bp): TTTTGAAGAA Left flanking sequence: Indices 1871529 -- 1872028 AAAAAACCGAATTCGGCGAAAAATGAATGAAATAATTTAATTTAAGAAAATCAAAGCGTGCTCCA ATGCGAATTTCTTTGGGCGCGTATTTAAAAAAGTGATGCTGGTACAAATGAAATTCGGCGATTTC AAGCTTAAATATAAAATAAGGGAATTTTACAGAACAAATTCCGGAAAATTCAGATTTTAAAATTT TTTTGAAACAGAATATTGGAAGCTCTTGTGAATTCTGGTAAAGCCTGGAAATTTTTTTTCGAAAA TTTATTTTTATTTTTTTTTTACGAAAATTTTAATTTTTCTCCTGAAAACTGGTTTTTTTAAAATT TTTTGGATTAAAAATGTAGAAAATCGGACAATTCCGAGTAAACTTCAAAAAAAACTGGTATTTTT CCAATTTTTGCATAAAAAAATAAATAAAATTGGCAGATTTTTGAAATTTTTGCATTAAAAACGTG CTATTTTATACATTTTGTAATGTAAAAATTAAAAAATTGATTTTT Right flanking sequence: Indices 1872049 -- 1872548 ACCACAAAAATTTTGACTAAAAATCTGAAAAACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCG GGGAAAAATTACAGTTTTTCAGGAAAATTAACATATTTTTAATAAAAAGCAAGATTTCTGTACGA ATTTACCAATTTTTTTGAAATAAACACGTTTTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAAC TCACCGAAAACGGGTCGGCGAACGGATTATCTGACATTTTCCGGGTTTTTTGCTGATTTGCTACC TTAAAAATCAATATTTTAGTCGGAAAAAAGGAATTATAAACGATTTAATCCATTTATTTACGAAT TTGATTCAATAAACTGACGGAACGGTGGTGACGAAATATATTTTATAAACAAACGGGCAGAAATA TGAGTCAGAACTATCGGGTGACGTGGCAATCTTATCAATTTGGGTCTCGACACGATATTTATTCG ATTTTTATGGATTTTTTGCAAAAAAAAATTGGAAAAAATCGGCTA Found at i:1872510 original size:11 final size:10 Alignment explanation
Indices: 1872491--1872519 Score: 35 Period size: 10 Copynumber: 2.8 Consensus size: 10 1872481 GGTCTCGACA * 1872491 CGATATTTATT 1 CGATTTTTA-T 1872502 CGATTTTTAT 1 CGATTTTTAT * 1872512 GGATTTTT 1 CGATTTTT 1872520 TGCAAAAAAA Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 10 8 0.50 11 8 0.50 ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59 Consensus pattern (10 bp): CGATTTTTAT Left flanking sequence: Indices 1871991 -- 1872490 ATACATTTTGTAATGTAAAAATTAAAAAATTGATTTTTTTTTGAAGAATTTTGAAGAAACCACAA AAATTTTGACTAAAAATCTGAAAAACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCGGGGAAAA ATTACAGTTTTTCAGGAAAATTAACATATTTTTAATAAAAAGCAAGATTTCTGTACGAATTTACC AATTTTTTTGAAATAAACACGTTTTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAACTCACCGA AAACGGGTCGGCGAACGGATTATCTGACATTTTCCGGGTTTTTTGCTGATTTGCTACCTTAAAAA TCAATATTTTAGTCGGAAAAAAGGAATTATAAACGATTTAATCCATTTATTTACGAATTTGATTC AATAAACTGACGGAACGGTGGTGACGAAATATATTTTATAAACAAACGGGCAGAAATATGAGTCA GAACTATCGGGTGACGTGGCAATCTTATCAATTTGGGTCTCGACA Right flanking sequence: Indices 1872520 -- 1873019 TGCAAAAAAAAATTGGAAAAAATCGGCTAAAAATAGAGAAAATCGATGAAAATTGTGAAAAATTA AAAAATTAAAAAAAGAAAAAAACTACAGTACCCCCTGAACGACACATACCCGTTTTGATGTTATC GTGGCGAGACCTATGCCACCCTTTTAGGGTATGGTCCTTTAAAATTACAGCAAGATTTGGATTTG TTTTTCTGTTTTTTAATGAATTAATTAATTAAAATTTGAAAAGAGGGGTTTTCATTCAATTTTTT TCGAAATTTTGCACAATAAACAAGAATTTAAATATTTTTCGGTGCAAAATTACATTTTTTAGGGA AAAATCAAGATTTCTGTATGAATTTTTCAAAATTAAGACAGATTTTCATCATTTTTCTGAAATAA ATCTGTTTTCAAAAATCTTAACAATTCCGAAAAATGGAAAAAATTCGGTAAAACACCTCTGAATT TAAAAAAAAAGCAAAATCGGAATGAAAAAAAATTTCGAGAAAAAA Found at i:1872570 original size:10 final size:10 Alignment explanation
Indices: 1872549--1872580 Score: 36 Period size: 9 Copynumber: 3.4 Consensus size: 10 1872539 AAATCGGCTA 1872549 AAAATAGA-G 1 AAAATAGATG * 1872558 AAAATCGATG 1 AAAATAGATG * 1872568 AAAATTG-TG 1 AAAATAGATG 1872577 AAAA 1 AAAA 1872581 ATTAAAAAAT Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 9 13 0.65 10 7 0.35 ACGTcount: A:0.59, C:0.03, G:0.19, T:0.19 Consensus pattern (10 bp): AAAATAGATG Left flanking sequence: Indices 1872049 -- 1872548 ACCACAAAAATTTTGACTAAAAATCTGAAAAACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCG GGGAAAAATTACAGTTTTTCAGGAAAATTAACATATTTTTAATAAAAAGCAAGATTTCTGTACGA ATTTACCAATTTTTTTGAAATAAACACGTTTTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAAC TCACCGAAAACGGGTCGGCGAACGGATTATCTGACATTTTCCGGGTTTTTTGCTGATTTGCTACC TTAAAAATCAATATTTTAGTCGGAAAAAAGGAATTATAAACGATTTAATCCATTTATTTACGAAT TTGATTCAATAAACTGACGGAACGGTGGTGACGAAATATATTTTATAAACAAACGGGCAGAAATA TGAGTCAGAACTATCGGGTGACGTGGCAATCTTATCAATTTGGGTCTCGACACGATATTTATTCG ATTTTTATGGATTTTTTGCAAAAAAAAATTGGAAAAAATCGGCTA Right flanking sequence: Indices 1872581 -- 1873080 ATTAAAAAATTAAAAAAAGAAAAAAACTACAGTACCCCCTGAACGACACATACCCGTTTTGATGT TATCGTGGCGAGACCTATGCCACCCTTTTAGGGTATGGTCCTTTAAAATTACAGCAAGATTTGGA TTTGTTTTTCTGTTTTTTAATGAATTAATTAATTAAAATTTGAAAAGAGGGGTTTTCATTCAATT TTTTTCGAAATTTTGCACAATAAACAAGAATTTAAATATTTTTCGGTGCAAAATTACATTTTTTA GGGAAAAATCAAGATTTCTGTATGAATTTTTCAAAATTAAGACAGATTTTCATCATTTTTCTGAA ATAAATCTGTTTTCAAAAATCTTAACAATTCCGAAAAATGGAAAAAATTCGGTAAAACACCTCTG AATTTAAAAAAAAAGCAAAATCGGAATGAAAAAAAATTTCGAGAAAAAATCCAAATTTTGACTTA AAATCTAAAAAAATGGCCGATTTTAGACGTTTTTTAGTTCAAAAA Found at i:1872595 original size:7 final size:8 Alignment explanation
Indices: 1872577--1872605 Score: 44 Period size: 8 Copynumber: 3.6 Consensus size: 8 1872567 GAAAATTGTG 1872577 AAAAATTA 1 AAAAATTA 1872585 AAAAATTA 1 AAAAATTA ** 1872593 AAAAAAGA 1 AAAAATTA 1872601 AAAAA 1 AAAAA 1872606 ACTACAGTAC Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 19 1.00 ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14 Consensus pattern (8 bp): AAAAATTA Left flanking sequence: Indices 1872077 -- 1872576 AAAACTGTCAAAAACTGTGAGAAAATGGGTTTTTTCGGGGAAAAATTACAGTTTTTCAGGAAAAT TAACATATTTTTAATAAAAAGCAAGATTTCTGTACGAATTTACCAATTTTTTTGAAATAAACACG TTTTTCCTCCAAAAAAAACCGATTTTCCAGCTAAAACTCACCGAAAACGGGTCGGCGAACGGATT ATCTGACATTTTCCGGGTTTTTTGCTGATTTGCTACCTTAAAAATCAATATTTTAGTCGGAAAAA AGGAATTATAAACGATTTAATCCATTTATTTACGAATTTGATTCAATAAACTGACGGAACGGTGG TGACGAAATATATTTTATAAACAAACGGGCAGAAATATGAGTCAGAACTATCGGGTGACGTGGCA ATCTTATCAATTTGGGTCTCGACACGATATTTATTCGATTTTTATGGATTTTTTGCAAAAAAAAA TTGGAAAAAATCGGCTAAAAATAGAGAAAATCGATGAAAATTGTG Right flanking sequence: Indices 1872606 -- 1873105 ACTACAGTACCCCCTGAACGACACATACCCGTTTTGATGTTATCGTGGCGAGACCTATGCCACCC TTTTAGGGTATGGTCCTTTAAAATTACAGCAAGATTTGGATTTGTTTTTCTGTTTTTTAATGAAT TAATTAATTAAAATTTGAAAAGAGGGGTTTTCATTCAATTTTTTTCGAAATTTTGCACAATAAAC AAGAATTTAAATATTTTTCGGTGCAAAATTACATTTTTTAGGGAAAAATCAAGATTTCTGTATGA ATTTTTCAAAATTAAGACAGATTTTCATCATTTTTCTGAAATAAATCTGTTTTCAAAAATCTTAA CAATTCCGAAAAATGGAAAAAATTCGGTAAAACACCTCTGAATTTAAAAAAAAAGCAAAATCGGA ATGAAAAAAAATTTCGAGAAAAAATCCAAATTTTGACTTAAAATCTAAAAAAATGGCCGATTTTA GACGTTTTTTAGTTCAAAAATGGGCTTTTTCGGAGAAAAATTACA Found at i:1873229 original size:9 final size:9 Alignment explanation
Indices: 1873215--1873244 Score: 37 Period size: 9 Copynumber: 3.2 Consensus size: 9 1873205 TTAAGTCAGT 1873215 TTTTAAAAA 1 TTTTAAAAA * 1873224 TTTTAATAA 1 TTTTAAAAA * 1873233 TTTCAGAAAA 1 TTTTA-AAAA 1873243 TT 1 TT 1873245 CAAAAAAAAT Statistics Matches: 17, Mismatches: 3, Indels: 1 0.81 0.14 0.05 Matches are distributed among these distances: 9 12 0.71 10 5 0.29 ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47 Consensus pattern (9 bp): TTTTAAAAA Left flanking sequence: Indices 1872715 -- 1873214 TTTTTCTGTTTTTTAATGAATTAATTAATTAAAATTTGAAAAGAGGGGTTTTCATTCAATTTTTT TCGAAATTTTGCACAATAAACAAGAATTTAAATATTTTTCGGTGCAAAATTACATTTTTTAGGGA AAAATCAAGATTTCTGTATGAATTTTTCAAAATTAAGACAGATTTTCATCATTTTTCTGAAATAA ATCTGTTTTCAAAAATCTTAACAATTCCGAAAAATGGAAAAAATTCGGTAAAACACCTCTGAATT TAAAAAAAAAGCAAAATCGGAATGAAAAAAAATTTCGAGAAAAAATCCAAATTTTGACTTAAAAT CTAAAAAAATGGCCGATTTTAGACGTTTTTTAGTTCAAAAATGGGCTTTTTCGGAGAAAAATTAC ATTTTTTAAAAAGGAAAGTAACATATTTTAAGTGAAAAAGTCACGATTTCTGTACGAATTTTTGA AATTAAGACAGAGCTATTCATCATTTTTCTGAAAATTAAGTCAGT Right flanking sequence: Indices 1873245 -- 1873744 CAAAAAAAATTTCGCAAGTCAGAATTAAAATTTTCGAAAAAAAATCCAAATTTTTTAAGAAATTT TTTTTCAATCTGAAAAACGGCCCATTTTAGACATTTCTAATTAAAAAATTGTGAGAAAATGGGGG TTTTTCAGGGAAAATTACAAAAAATTACAAAAAAAAGCAAAGTCCTAATTGAAATTTTCGCAAAA AAAAAACCATCAATTTTCAGTTTTTTTTTTTAATTTTGAGGCTTCTCATGAATAAAAATATAAAT AAAATTTAAAAAAGAAAATGTTTTGATTTTTGATAAGAATTAAAAATTTAAAATTAAATAAAAAA ATATATAAATTCTGAATAAAAGACCCCTGCCACGTCACAATAAAAATGCGAAATCTTGTATTTCC CTATTTCCTGATTTCCTTTGCCCGCGGCGTCTCAATAATCCCCTCCAAGTGTGAAGAAAGTAGAA AAAAAAGATGCCAAAAGATTAAGAAAAAAACAGAATAAGCCTAAT Found at i:1873409 original size:11 final size:10 Alignment explanation
Indices: 1873385--1873408 Score: 48 Period size: 10 Copynumber: 2.4 Consensus size: 10 1873375 TTTTTCAGGG 1873385 AAAATTACAA 1 AAAATTACAA 1873395 AAAATTACAA 1 AAAATTACAA 1873405 AAAA 1 AAAA 1873409 AAGCAAAGTC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17 Consensus pattern (10 bp): AAAATTACAA Left flanking sequence: Indices 1872885 -- 1873384 GATTTTCATCATTTTTCTGAAATAAATCTGTTTTCAAAAATCTTAACAATTCCGAAAAATGGAAA AAATTCGGTAAAACACCTCTGAATTTAAAAAAAAAGCAAAATCGGAATGAAAAAAAATTTCGAGA AAAAATCCAAATTTTGACTTAAAATCTAAAAAAATGGCCGATTTTAGACGTTTTTTAGTTCAAAA ATGGGCTTTTTCGGAGAAAAATTACATTTTTTAAAAAGGAAAGTAACATATTTTAAGTGAAAAAG TCACGATTTCTGTACGAATTTTTGAAATTAAGACAGAGCTATTCATCATTTTTCTGAAAATTAAG TCAGTTTTTAAAAATTTTAATAATTTCAGAAAATTCAAAAAAAATTTCGCAAGTCAGAATTAAAA TTTTCGAAAAAAAATCCAAATTTTTTAAGAAATTTTTTTTCAATCTGAAAAACGGCCCATTTTAG ACATTTCTAATTAAAAAATTGTGAGAAAATGGGGGTTTTTCAGGG Right flanking sequence: Indices 1873409 -- 1873908 AAGCAAAGTCCTAATTGAAATTTTCGCAAAAAAAAAACCATCAATTTTCAGTTTTTTTTTTTAAT TTTGAGGCTTCTCATGAATAAAAATATAAATAAAATTTAAAAAAGAAAATGTTTTGATTTTTGAT AAGAATTAAAAATTTAAAATTAAATAAAAAAATATATAAATTCTGAATAAAAGACCCCTGCCACG TCACAATAAAAATGCGAAATCTTGTATTTCCCTATTTCCTGATTTCCTTTGCCCGCGGCGTCTCA ATAATCCCCTCCAAGTGTGAAGAAAGTAGAAAAAAAAGATGCCAAAAGATTAAGAAAAAAACAGA ATAAGCCTAATTACATGTAACACACACAAACACTTATTCGTGGAACATCCTGGGGGTCTCGAGGG GAAAGAGAACGAGAAGCCAGAACGCCAGAAGTGTTAGAGACGCAGAGAACATGGGATGTTCTCTG CGTCTCCCTCTCACTCACGCACTAACTTTCTGCGCTCTCTGCGCT Found at i:1873535 original size:7 final size:7 Alignment explanation
Indices: 1873525--1873538 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1873515 AAAGAAAATG 1873525 TTTTGAT 1 TTTTGAT 1873532 TTTTGAT 1 TTTTGAT 1873539 AAGAATTAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71 Consensus pattern (7 bp): TTTTGAT Left flanking sequence: Indices 1873025 -- 1873524 ATTTTGACTTAAAATCTAAAAAAATGGCCGATTTTAGACGTTTTTTAGTTCAAAAATGGGCTTTT TCGGAGAAAAATTACATTTTTTAAAAAGGAAAGTAACATATTTTAAGTGAAAAAGTCACGATTTC TGTACGAATTTTTGAAATTAAGACAGAGCTATTCATCATTTTTCTGAAAATTAAGTCAGTTTTTA AAAATTTTAATAATTTCAGAAAATTCAAAAAAAATTTCGCAAGTCAGAATTAAAATTTTCGAAAA AAAATCCAAATTTTTTAAGAAATTTTTTTTCAATCTGAAAAACGGCCCATTTTAGACATTTCTAA TTAAAAAATTGTGAGAAAATGGGGGTTTTTCAGGGAAAATTACAAAAAATTACAAAAAAAAGCAA AGTCCTAATTGAAATTTTCGCAAAAAAAAAACCATCAATTTTCAGTTTTTTTTTTTAATTTTGAG GCTTCTCATGAATAAAAATATAAATAAAATTTAAAAAAGAAAATG Right flanking sequence: Indices 1873539 -- 1874038 AAGAATTAAAAATTTAAAATTAAATAAAAAAATATATAAATTCTGAATAAAAGACCCCTGCCACG TCACAATAAAAATGCGAAATCTTGTATTTCCCTATTTCCTGATTTCCTTTGCCCGCGGCGTCTCA ATAATCCCCTCCAAGTGTGAAGAAAGTAGAAAAAAAAGATGCCAAAAGATTAAGAAAAAAACAGA ATAAGCCTAATTACATGTAACACACACAAACACTTATTCGTGGAACATCCTGGGGGTCTCGAGGG GAAAGAGAACGAGAAGCCAGAACGCCAGAAGTGTTAGAGACGCAGAGAACATGGGATGTTCTCTG CGTCTCCCTCTCACTCACGCACTAACTTTCTGCGCTCTCTGCGCTCTCTGCACTCTCCCAAGCCA CCAGTGTGTGTGTGTGCCTCCTTCTTTCCCTTTTTAAGCACCCAATTAATATTTGCCTGCTTCTC TGCAGTCTCTTACCTCCTGTGTCTCCAGGGAGGCGACTTCTCTCC Found at i:1873552 original size:7 final size:7 Alignment explanation
Indices: 1873538--1873562 Score: 36 Period size: 7 Copynumber: 3.6 Consensus size: 7 1873528 TGATTTTTGA * 1873538 TAAGAAT 1 TAAAAAT 1873545 TAAAAAT 1 TAAAAAT * 1873552 TTAAAAT 1 TAAAAAT 1873559 TAAA 1 TAAA 1873563 TAAAAAAATA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 7 15 1.00 ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32 Consensus pattern (7 bp): TAAAAAT Left flanking sequence: Indices 1873038 -- 1873537 ATCTAAAAAAATGGCCGATTTTAGACGTTTTTTAGTTCAAAAATGGGCTTTTTCGGAGAAAAATT ACATTTTTTAAAAAGGAAAGTAACATATTTTAAGTGAAAAAGTCACGATTTCTGTACGAATTTTT GAAATTAAGACAGAGCTATTCATCATTTTTCTGAAAATTAAGTCAGTTTTTAAAAATTTTAATAA TTTCAGAAAATTCAAAAAAAATTTCGCAAGTCAGAATTAAAATTTTCGAAAAAAAATCCAAATTT TTTAAGAAATTTTTTTTCAATCTGAAAAACGGCCCATTTTAGACATTTCTAATTAAAAAATTGTG AGAAAATGGGGGTTTTTCAGGGAAAATTACAAAAAATTACAAAAAAAAGCAAAGTCCTAATTGAA ATTTTCGCAAAAAAAAAACCATCAATTTTCAGTTTTTTTTTTTAATTTTGAGGCTTCTCATGAAT AAAAATATAAATAAAATTTAAAAAAGAAAATGTTTTGATTTTTGA Right flanking sequence: Indices 1873563 -- 1874062 TAAAAAAATATATAAATTCTGAATAAAAGACCCCTGCCACGTCACAATAAAAATGCGAAATCTTG TATTTCCCTATTTCCTGATTTCCTTTGCCCGCGGCGTCTCAATAATCCCCTCCAAGTGTGAAGAA AGTAGAAAAAAAAGATGCCAAAAGATTAAGAAAAAAACAGAATAAGCCTAATTACATGTAACACA CACAAACACTTATTCGTGGAACATCCTGGGGGTCTCGAGGGGAAAGAGAACGAGAAGCCAGAACG CCAGAAGTGTTAGAGACGCAGAGAACATGGGATGTTCTCTGCGTCTCCCTCTCACTCACGCACTA ACTTTCTGCGCTCTCTGCGCTCTCTGCACTCTCCCAAGCCACCAGTGTGTGTGTGTGCCTCCTTC TTTCCCTTTTTAAGCACCCAATTAATATTTGCCTGCTTCTCTGCAGTCTCTTACCTCCTGTGTCT CCAGGGAGGCGACTTCTCTCCCTCTCCGTCTGCCTGCCTGTGTGT Found at i:1873651 original size:8 final size:8 Alignment explanation
Indices: 1873629--1873651 Score: 32 Period size: 8 Copynumber: 2.9 Consensus size: 8 1873619 GAAATCTTGT ** 1873629 ATTTCCCT 1 ATTTCCTG 1873637 ATTTCCTG 1 ATTTCCTG 1873645 ATTTCCT 1 ATTTCCT 1873652 TTGCCCGCGG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.13, C:0.30, G:0.04, T:0.52 Consensus pattern (8 bp): ATTTCCTG Left flanking sequence: Indices 1873129 -- 1873628 ATTTTAAGTGAAAAAGTCACGATTTCTGTACGAATTTTTGAAATTAAGACAGAGCTATTCATCAT TTTTCTGAAAATTAAGTCAGTTTTTAAAAATTTTAATAATTTCAGAAAATTCAAAAAAAATTTCG CAAGTCAGAATTAAAATTTTCGAAAAAAAATCCAAATTTTTTAAGAAATTTTTTTTCAATCTGAA AAACGGCCCATTTTAGACATTTCTAATTAAAAAATTGTGAGAAAATGGGGGTTTTTCAGGGAAAA TTACAAAAAATTACAAAAAAAAGCAAAGTCCTAATTGAAATTTTCGCAAAAAAAAAACCATCAAT TTTCAGTTTTTTTTTTTAATTTTGAGGCTTCTCATGAATAAAAATATAAATAAAATTTAAAAAAG AAAATGTTTTGATTTTTGATAAGAATTAAAAATTTAAAATTAAATAAAAAAATATATAAATTCTG AATAAAAGACCCCTGCCACGTCACAATAAAAATGCGAAATCTTGT Right flanking sequence: Indices 1873652 -- 1874151 TTGCCCGCGGCGTCTCAATAATCCCCTCCAAGTGTGAAGAAAGTAGAAAAAAAAGATGCCAAAAG ATTAAGAAAAAAACAGAATAAGCCTAATTACATGTAACACACACAAACACTTATTCGTGGAACAT CCTGGGGGTCTCGAGGGGAAAGAGAACGAGAAGCCAGAACGCCAGAAGTGTTAGAGACGCAGAGA ACATGGGATGTTCTCTGCGTCTCCCTCTCACTCACGCACTAACTTTCTGCGCTCTCTGCGCTCTC TGCACTCTCCCAAGCCACCAGTGTGTGTGTGTGCCTCCTTCTTTCCCTTTTTAAGCACCCAATTA ATATTTGCCTGCTTCTCTGCAGTCTCTTACCTCCTGTGTCTCCAGGGAGGCGACTTCTCTCCCTC TCCGTCTGCCTGCCTGTGTGTGTGTGTGTGTGTGCGTCCTCCTGAAAAATCGATATACTTTTCTC CCCCATGCGATTTATTTTCAATTTCACATTGTAACCTACTATATA Found at i:1873827 original size:8 final size:7 Alignment explanation
Indices: 1873810--1873829 Score: 31 Period size: 8 Copynumber: 2.7 Consensus size: 7 1873800 AAAGAGAACG 1873810 AGAAGCC 1 AGAAGCC 1873817 AGAACGCC 1 AGAA-GCC 1873825 AGAAG 1 AGAAG 1873830 TGTTAGAGAC Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 7 5 0.42 8 7 0.58 ACGTcount: A:0.45, C:0.25, G:0.30, T:0.00 Consensus pattern (7 bp): AGAAGCC Left flanking sequence: Indices 1873310 -- 1873809 TTTTTCAATCTGAAAAACGGCCCATTTTAGACATTTCTAATTAAAAAATTGTGAGAAAATGGGGG TTTTTCAGGGAAAATTACAAAAAATTACAAAAAAAAGCAAAGTCCTAATTGAAATTTTCGCAAAA AAAAAACCATCAATTTTCAGTTTTTTTTTTTAATTTTGAGGCTTCTCATGAATAAAAATATAAAT AAAATTTAAAAAAGAAAATGTTTTGATTTTTGATAAGAATTAAAAATTTAAAATTAAATAAAAAA ATATATAAATTCTGAATAAAAGACCCCTGCCACGTCACAATAAAAATGCGAAATCTTGTATTTCC CTATTTCCTGATTTCCTTTGCCCGCGGCGTCTCAATAATCCCCTCCAAGTGTGAAGAAAGTAGAA AAAAAAGATGCCAAAAGATTAAGAAAAAAACAGAATAAGCCTAATTACATGTAACACACACAAAC ACTTATTCGTGGAACATCCTGGGGGTCTCGAGGGGAAAGAGAACG Right flanking sequence: Indices 1873830 -- 1874329 TGTTAGAGACGCAGAGAACATGGGATGTTCTCTGCGTCTCCCTCTCACTCACGCACTAACTTTCT GCGCTCTCTGCGCTCTCTGCACTCTCCCAAGCCACCAGTGTGTGTGTGTGCCTCCTTCTTTCCCT TTTTAAGCACCCAATTAATATTTGCCTGCTTCTCTGCAGTCTCTTACCTCCTGTGTCTCCAGGGA GGCGACTTCTCTCCCTCTCCGTCTGCCTGCCTGTGTGTGTGTGTGTGTGTGCGTCCTCCTGAAAA ATCGATATACTTTTCTCCCCCATGCGATTTATTTTCAATTTCACATTGTAACCTACTATATATTG CTTTTTTCTTCTTTTTTTCCCCTATGAAAATACTATGGGAGAGCGACTGGCAAGGAGCCAGAATC GAGCAAACCATCACCCATTTGTCATGGATCCAACAGCAGGACAAACCAGACCACGGATTGCTGGG AGTCGGCACCGAAACTGGATCCGTAGGTGTTACACTGACAGACTT Found at i:1873906 original size:9 final size:9 Alignment explanation
Indices: 1873892--1873920 Score: 51 Period size: 9 Copynumber: 3.2 Consensus size: 9 1873882 GCACTAACTT 1873892 TCTGCGCTC 1 TCTGCGCTC 1873901 TCTGCGCTC 1 TCTGCGCTC * 1873910 TCTGCACTC 1 TCTGCGCTC 1873919 TC 1 TC 1873921 CCAAGCCACC Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 9 19 1.00 ACGTcount: A:0.03, C:0.45, G:0.17, T:0.34 Consensus pattern (9 bp): TCTGCGCTC Left flanking sequence: Indices 1873392 -- 1873891 CAAAAAATTACAAAAAAAAGCAAAGTCCTAATTGAAATTTTCGCAAAAAAAAAACCATCAATTTT CAGTTTTTTTTTTTAATTTTGAGGCTTCTCATGAATAAAAATATAAATAAAATTTAAAAAAGAAA ATGTTTTGATTTTTGATAAGAATTAAAAATTTAAAATTAAATAAAAAAATATATAAATTCTGAAT AAAAGACCCCTGCCACGTCACAATAAAAATGCGAAATCTTGTATTTCCCTATTTCCTGATTTCCT TTGCCCGCGGCGTCTCAATAATCCCCTCCAAGTGTGAAGAAAGTAGAAAAAAAAGATGCCAAAAG ATTAAGAAAAAAACAGAATAAGCCTAATTACATGTAACACACACAAACACTTATTCGTGGAACAT CCTGGGGGTCTCGAGGGGAAAGAGAACGAGAAGCCAGAACGCCAGAAGTGTTAGAGACGCAGAGA ACATGGGATGTTCTCTGCGTCTCCCTCTCACTCACGCACTAACTT Right flanking sequence: Indices 1873921 -- 1874420 CCAAGCCACCAGTGTGTGTGTGTGCCTCCTTCTTTCCCTTTTTAAGCACCCAATTAATATTTGCC TGCTTCTCTGCAGTCTCTTACCTCCTGTGTCTCCAGGGAGGCGACTTCTCTCCCTCTCCGTCTGC CTGCCTGTGTGTGTGTGTGTGTGTGCGTCCTCCTGAAAAATCGATATACTTTTCTCCCCCATGCG ATTTATTTTCAATTTCACATTGTAACCTACTATATATTGCTTTTTTCTTCTTTTTTTCCCCTATG AAAATACTATGGGAGAGCGACTGGCAAGGAGCCAGAATCGAGCAAACCATCACCCATTTGTCATG GATCCAACAGCAGGACAAACCAGACCACGGATTGCTGGGAGTCGGCACCGAAACTGGATCCGTAG GTGTTACACTGACAGACTTCAAGCCCACTCCAGATGACCTTACCCGTTATAACTTTAACCTTCGA GGACATCATAACGCTATTCGAATGGTTACGTGGAATAAGAGCCAG Found at i:1875379 original size:9 final size:9 Alignment explanation
Indices: 1875365--1875382 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 1875355 TATTCAATAG 1875365 GAGAAAACC 1 GAGAAAACC 1875374 GAGAAAACC 1 GAGAAAACC 1875383 TCTGAATCGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00 Consensus pattern (9 bp): GAGAAAACC Left flanking sequence: Indices 1874865 -- 1875364 TCTGCTTACGATCAACTTCACCCCGCAATTTATCGCTCGAAATTTCAAGTAATACGTATGGAATG GAACACGGACGGTACGATTCTCGCCTTAATAAACGCCAACAATGAGCTCGTCATGATTGACACCA CCTGCCGAGTCATACATCGTGAGCGGATCCCGATCGCGGATAAGGAGAAGACACTAATCCCGAAT CCCCCACCAACTCAGAAGCTTACAGCCTTCACTTGGGCTCATAACGGAAATGTGGTGATAATCGC TGCCGGCGGGTGTCTGACTGTCGGACGGATTCTGTTCGGCGTCCCATCGCTCTTCGAAATTGTGA CGTACGATCTGTGGAAGATGATGGGATGCTCGTCAAAAAAAGTGGATAAGCTGCCGATTCCACTC AAGGAGATGAATGCGTTGCGAGAGCTCGATCATCACGTCATCAGGGTGAGTTAATCCGTTGGTGG AAAGGATTATATTTCCTTTTTAAGATATACATTTATATTCAATAG Right flanking sequence: Indices 1875383 -- 1875882 TCTGAATCGGCGATAATGATGACTAAAAGTTTGAACTTATAGAAAAATATTATTTGGTAGAGCTA GGTCCTGATCCAGGGTAGAGCGGCAATCGGAAAAAAAAATGGTACGTCCATGAAAGTGCGCTCTA CTGCTCTATGCGTATAACACTGGTTTGAGGGTATCAACAATAAATTCATTGGTGTCATTAAATAG AGATTTTTCTGTAGAACATTGTTCATACGCAACATTTTTTAAAAAATTGAGCCGTTTTCGAGATA AATCCAATATAAAAATGTGACTACTGTAGAAATTAGTGTATGTACGCGAGGTTTGCCTCCCCGTG ATTGCCGATCGACGATCTCCGATTGCCGCTCTCCCATGGTCCTGATCCAGGATGAATCTGAATTG TATCCCTAATCCATTTTTGAAAAGTGGAGTAGCGCCAGTCGGGAAAATTTTAAAAAAAGTAGCGA AAAAAAAAGAAGGAAATCGCTTTTCAACGGTAAAATTATCCCACG Found at i:1876787 original size:8 final size:8 Alignment explanation
Indices: 1876774--1876789 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1876764 AGTTGGTAAG 1876774 GAATTTTT 1 GAATTTTT 1876782 GAATTTTT 1 GAATTTTT 1876790 TTAAAAATTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62 Consensus pattern (8 bp): GAATTTTT Left flanking sequence: Indices 1876274 -- 1876773 GCCTCAAAATGTCAATTTTTCCAAAATTTTGGCGAATTGCCAAAACTTTGGCTTCAAGCTAGCTT TTTTTCAAAAATCCTCTGCAAATTTTGTGTTCTTTCAGAATTTGAAAACCTATTTAAATACCACA TTCAAAACGCTTCCATATCCGCCGAGTTCAAGCAGAAAAAGTGGATTTTCAGTCAGACCATTTAT ATGCAAAATTGCAGTAGATTTCTATAAACACCCAAAACTTTCATTTTCAGTGTCGAATACCCCGG TCCCAAGACATGTGCTCCTACGTGTGCAGTGTGGTGGACGCCCGATGCTACTGTACAATACGGCC ATTGGCACGTGGCAGTCACACTTATGTACTCTGCTTCGAACATCTCGGAGGACTGGTCCCATTGC TTCTCGGACGTCAGGTCAATCGGTTTTTACCGCAATTTCAGATTTTCATGTATCAGTCGAAGCCA CCTACGAGCTCACCGCCTAGTGGCTCTTCTGCCCAAGTTGGTAAG Right flanking sequence: Indices 1876790 -- 1877289 TTAAAAATTCAAAACCACGTTAAAATATCCCGACTCACGGGTTCTATCTTCAATAAAATTTTAAC TAAGAGTTTGGTGGTACTTTACATTTTTTGACCGCTGAAATATTTGGCAGACATGTTTTTTTTAA TGAAGCTGTCACGTGGTGCAAGGCTGTCTCATTTCGCCTTGATCTACCAAAAATGTGGGAATTTT TGGCCAAAAAATGTGACGTCAGCACCACTTTCTTAACCATGTGAAATCAGTTGAGAACTCTGCCG CATTTTTTGTAGATCTAGATAGATCAAAGCCGAAATGAGACACTCTGAAACCATGTGCGACGTCA CAGCTCACCAGGTTTCAGAGTGTTTCATTTCGGCTTGATCTACTTAGATCTACAAAAAATGCGGC AGAGTTCTCAACTGATTTCACATGGTTAAGAACGTGGTGCTGACGTCACATTTTTTTGGGCCAAA AATTCCCGCATTTTTTGTAGATCAAACCATAATGGGACAGTAGTC Found at i:1880294 original size:7 final size:7 Alignment explanation
Indices: 1880282--1880295 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1880272 ACAAGCAAAA 1880282 GTTGCCG 1 GTTGCCG 1880289 GTTGCCG 1 GTTGCCG 1880296 AAGCTTTTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.29, G:0.43, T:0.29 Consensus pattern (7 bp): GTTGCCG Left flanking sequence: Indices 1879782 -- 1880281 CGTCAGTTCTTCCAGAAGATTCTCGCCGAGTGTCTCTCACTGAGGGCTGTCATCAATTCTTCGAA TTTTGGAAAGCCTCCACCGCCTGCTGCAGCTTCTACCATAAGCCTCCCCTGTCAGCCATCAACAT CCAAAGAGCCCGACTCCTCAGCCCACACCACTCCGATCAGCACGAGAACCGTCGAATCAAAGCAC GACGTGACGAGTATGGCGAGCTCGGTGAGCACGTGGCACGAGGAAATTGAAGCGCTGGCGTTTAT CGACGGGGATGCCGATGAGAAGGCGATGTTGGTGCAGCCGGCGTTGAAGACCGGATGGGCAGCGA TGGAACAAGCGAGTAAAAAGGATGCGGAGGTGATACGATCGCACGTGGATAAGTTGGCATCAATT GCAGAACAATTGAGTAAACGACACGGTGATTTTAATGTGGTGAGTTGGAGTACAACCTCGGTACC AAGATGCCGGTTGCCGAAAAGCTGCCGAAGTGTCGACAAGCAAAA Right flanking sequence: Indices 1880296 -- 1880795 AAGCTTTTTGAGTCCGGCAACTTCGGCAATTGCCGGTTGCCGAAATTTTTAGGAGTCGGCAACTT CGGCAACTGCCGATATCAATGTCAAATCTTTAATGCACAGAAAAAAGCATTCAGACTGCCTGAAA AATGCGAAAATTTCACTGTAACCGAAAAAAACGACCATAATTTTTTCCAAAACGCTCAAAAATAT GATTTCAACAACAAAAAAAACTTTGAAACTTGGTTGCCGGTTGCCGAAATTTTTTTAGGTTCGGC AAAAAAATCTCGGTTGCCGCACAACCGTGCTCCAAATAAAATTCCACTTGCTTGGAGGACCTACT ATCGTGCCTACCCTCGGCAGATTAGGCAGGCAGATTAGACAAAAAAAAACCCATTTTTAGGTGTT TTTGCCGCTATATAATTTGTTGGAATTAAATTTTTAGAAATTTTGACGTCACACCAGGCGTGGGC GGCAATTGCCGTTCGGCATATTGATTTGTCGACGAATTCGGCAAA Found at i:1880365 original size:9 final size:9 Alignment explanation
Indices: 1880351--1880368 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 1880341 TTTTTAGGAG 1880351 TCGGCAACT 1 TCGGCAACT 1880360 TCGGCAACT 1 TCGGCAACT 1880369 GCCGATATCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22 Consensus pattern (9 bp): TCGGCAACT Left flanking sequence: Indices 1879851 -- 1880350 GGAAAGCCTCCACCGCCTGCTGCAGCTTCTACCATAAGCCTCCCCTGTCAGCCATCAACATCCAA AGAGCCCGACTCCTCAGCCCACACCACTCCGATCAGCACGAGAACCGTCGAATCAAAGCACGACG TGACGAGTATGGCGAGCTCGGTGAGCACGTGGCACGAGGAAATTGAAGCGCTGGCGTTTATCGAC GGGGATGCCGATGAGAAGGCGATGTTGGTGCAGCCGGCGTTGAAGACCGGATGGGCAGCGATGGA ACAAGCGAGTAAAAAGGATGCGGAGGTGATACGATCGCACGTGGATAAGTTGGCATCAATTGCAG AACAATTGAGTAAACGACACGGTGATTTTAATGTGGTGAGTTGGAGTACAACCTCGGTACCAAGA TGCCGGTTGCCGAAAAGCTGCCGAAGTGTCGACAAGCAAAAGTTGCCGGTTGCCGAAGCTTTTTG AGTCCGGCAACTTCGGCAATTGCCGGTTGCCGAAATTTTTAGGAG Right flanking sequence: Indices 1880369 -- 1880868 GCCGATATCAATGTCAAATCTTTAATGCACAGAAAAAAGCATTCAGACTGCCTGAAAAATGCGAA AATTTCACTGTAACCGAAAAAAACGACCATAATTTTTTCCAAAACGCTCAAAAATATGATTTCAA CAACAAAAAAAACTTTGAAACTTGGTTGCCGGTTGCCGAAATTTTTTTAGGTTCGGCAAAAAAAT CTCGGTTGCCGCACAACCGTGCTCCAAATAAAATTCCACTTGCTTGGAGGACCTACTATCGTGCC TACCCTCGGCAGATTAGGCAGGCAGATTAGACAAAAAAAAACCCATTTTTAGGTGTTTTTGCCGC TATATAATTTGTTGGAATTAAATTTTTAGAAATTTTGACGTCACACCAGGCGTGGGCGGCAATTG CCGTTCGGCATATTGATTTGTCGACGAATTCGGCAAATCGGCAATTTGCCGGTTTGCCGATTTGC CGGAAACTTTCTTTTTCGGCAAATTGCCGATTTGCCGGAAATGTT Found at