TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10342174 original size:10 final size:10 Alignment explanation
Indices: 10342153--10342175 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 10342143 TCTAGAAGTT ** 10342153 TTTTAATTAA 1 TTTTAACCAA 10342163 TTTTAACCAA 1 TTTTAACCAA 10342173 TTT 1 TTT 10342176 CTTATGAGAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.35, C:0.09, G:0.00, T:0.57 Consensus pattern (10 bp): TTTTAACCAA Left flanking sequence: Indices 10341653 -- 10342152 TATTAAACTCGTAGTGTTATTATTGTGGAAGCTTGTCGTAGAATTTTGAATAGAACGCATTTTTC TGCTCATCATTCATTTTTTTTTTCTTCTCCGGTGCTCTTCTTCGAGATCCCGGCGCATAAGGCCA ATCTGGTTTCACGTCGTCGCTATCAATTTTTCGAAAATCAAATGGAGACACAGGATTGAATGCGT TTCCATGAGCGTATGCGTATGGCGAAGTTCCCTGGAAACGAGCAATCATTTGATTATCTCGATTT CTAAGTAACTAACCTGTTCGACAGCTCCCGATAATGGGAATCTGACTCCTGCTCCATTCTCGCCG ATCGGAAGTGGAAAATCAATTCCACCAATGAAGAAGGAGTCATCTCCTTGCTCAACTTCAACAGC AACTCCAGCATGATGAACGAATGGATTGCAATATGGTGGTTTACACTTGATTGGTTCATAACCAT AAGGAATTCTTCCCACAATAACTTCCTTTGCCTTTTCTAGAAGTT Right flanking sequence: Indices 10342176 -- 10342675 CTTATGAGATTAAAACATACTTCTTGCTTCTCGGAATGCTGGATTCTGTCCTAAAAGAGCCAATG TTTCGGGTTTAATATTGAGATGATTCGTTGGTCGAATTTGATATCCTACTTTAGTATCGACATTA ATATGTCCATAGTAAACATTTCCGTCTACATCGAAGTTACCCCAACCAGGAACTGGAACAATCAA ATCTCCAGCCATGCTCTGTAGAATGGTCTTTTTATTATGAACTCAAAAAGTTTCAACTTACCACT TTATTAGCCGGATTAATTTCAATACCTGTGTTAAACTGATCTGTGAACGGGAATAAAGGAAAGTT ATCCGCAGTTATAAGTGCTGGAAACATAGCTTGTGCTCCTTTAACCGGAATAACTAGAGGTTCAT CTCCACCATATTTTTGACATAATCGGTTTGTTATTAGAAAACTCAGCGAAAAACATAAATGTAGA ACTCGATTAGTCGATATCATGGAAATTTGGCGAAGTGATTAGCTA Found at i:10346345 original size:7 final size:7 Alignment explanation
Indices: 10346330--10346349 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 10346320 CGATTACAAA * 10346330 AAAAGCG 1 AAAAACG 10346337 AAAAACG 1 AAAAACG 10346344 AAAAAC 1 AAAAAC 10346350 TTCTGAAGTT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.70, C:0.15, G:0.15, T:0.00 Consensus pattern (7 bp): AAAAACG Left flanking sequence: Indices 10345830 -- 10346329 GTCGTCCACACATTTGGGAATATGCACGTCTAAACATGACGAACACAGTTATGAGCAAGCGTAAG CTCACCTGGTTTGTCGATGAAGGACATGTCGAGGGATGGGATGATCCAAGACTTCCAACTGTTCG AGGAGTTATGAGAAGAGGATTGACTGTCGAAGGATTGAAACAATTTATTGTTGCACAAGGAGGAT CGAGATCAGTTGTCATGATGGAATGGGATAAGATTTGGGCGTTCAATAAGAAGGTTATTGATCCA GTTGCGCCAAGGTAAATTTTAGATTCAAGAGAAAATTAATATTTCAACTGCAAGACTAATTCAGA TAGGTTTAGGGCCGGTCACAGAAAATTTTGAACCGACAAAAAACAGAACATCGAATTTCTCTGGA GAAAAAAAAACAACAAAAAAAACAAATTATTTTTTCTCCCGATCATATATTTTTTCGGTCCAAAA AACCACAGATATGTGTGTGTAGACTGCGATTTTTTCGATTACAAA Right flanking sequence: Indices 10346350 -- 10346849 TTCTGAAGTTTACAACGTCATTTTGTAAAATTTTATATGTTACCCTTACTTGCACTATAGTTATA CTTTTGAGTGCAATTTTTTTAATATTTTGGAAACAAGTGCAAAATTTGAAAATTAAAAAAAATTT TTCGTTTTTTTTTTCAACGAAAACGAAAAATCTTCAACGCTGTGGAGACTTTATAAACTCCTAGA GAACATATGGTATTTATATGGCTAGTTTATGGTTTTTTATCGTAAAACTACAAATTACTAGTGAA ACAAAAATTATTTACTTTTAAAAATCAGATTTAAAATGAATCTCTAAAAAATTTTCAGATACACA GCTCTCGACTCCACATCTCCGCTTGTTTCCATCGAATTAACAGATTCAATCTCTGACGACACCTC CAATGTGTCTCTTCATCCAAAGGTAAGTGCTCTCTCATTACATTGCGTGGAAGAGAATGGGACCC TCTCTCCTCCTTGTATCGATTTTTGGTTTCTTGGCTTAATTGGTA Found at i:10346474 original size:8 final size:8 Alignment explanation
Indices: 10346455--10346474 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 10346445 AAACAAGTGC ** 10346455 AAAATTTG 1 AAAATTAA 10346463 AAAATTAA 1 AAAATTAA 10346471 AAAA 1 AAAA 10346475 AATTTTTCGT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25 Consensus pattern (8 bp): AAAATTAA Left flanking sequence: Indices 10345955 -- 10346454 GTTCGAGGAGTTATGAGAAGAGGATTGACTGTCGAAGGATTGAAACAATTTATTGTTGCACAAGG AGGATCGAGATCAGTTGTCATGATGGAATGGGATAAGATTTGGGCGTTCAATAAGAAGGTTATTG ATCCAGTTGCGCCAAGGTAAATTTTAGATTCAAGAGAAAATTAATATTTCAACTGCAAGACTAAT TCAGATAGGTTTAGGGCCGGTCACAGAAAATTTTGAACCGACAAAAAACAGAACATCGAATTTCT CTGGAGAAAAAAAAACAACAAAAAAAACAAATTATTTTTTCTCCCGATCATATATTTTTTCGGTC CAAAAAACCACAGATATGTGTGTGTAGACTGCGATTTTTTCGATTACAAAAAAAGCGAAAAACGA AAAACTTCTGAAGTTTACAACGTCATTTTGTAAAATTTTATATGTTACCCTTACTTGCACTATAG TTATACTTTTGAGTGCAATTTTTTTAATATTTTGGAAACAAGTGC Right flanking sequence: Indices 10346475 -- 10346974 AATTTTTCGTTTTTTTTTTCAACGAAAACGAAAAATCTTCAACGCTGTGGAGACTTTATAAACTC CTAGAGAACATATGGTATTTATATGGCTAGTTTATGGTTTTTTATCGTAAAACTACAAATTACTA GTGAAACAAAAATTATTTACTTTTAAAAATCAGATTTAAAATGAATCTCTAAAAAATTTTCAGAT ACACAGCTCTCGACTCCACATCTCCGCTTGTTTCCATCGAATTAACAGATTCAATCTCTGACGAC ACCTCCAATGTGTCTCTTCATCCAAAGGTAAGTGCTCTCTCATTACATTGCGTGGAAGAGAATGG GACCCTCTCTCCTCCTTGTATCGATTTTTGGTTTCTTGGCTTAATTGGTAAAAATGACACCACAT TTATTACTTTAAAAATAATTTGTGTGTTTTTCCTTACAAAATGATTCTAGTTTTTTGAAGAAAAT AGTCAGTTTAAAAATTTTTAATTTTCTCTTTTCAGAATGCTGAAA Found at i:10348757 original size:8 final size:7 Alignment explanation
Indices: 10348740--10348761 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 10348730 GTCCGTGACG 10348740 CAAAATC 1 CAAAATC 10348747 CAAAGATC 1 CAAA-ATC 10348755 CAAAATC 1 CAAAATC 10348762 GGTATGTCCC Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 7 7 0.50 8 7 0.50 ACGTcount: A:0.55, C:0.27, G:0.05, T:0.14 Consensus pattern (7 bp): CAAAATC Left flanking sequence: Indices 10348240 -- 10348739 AACCCCTCTTGCCGGAGGAGCCGATATTGCAGGTCAAATTGAAGCACAAGGAGTTCTTGTCAGAG ATTTGAAGAACAAGGATTCCAAATCTCAAGAAACAAAGGATGCTATTGCGAAACTCCTAGAGCTC AAGAAGAACTATAAAGAGGTTACTGGTTCCGATTACAAGCCAGGCCCTGCTCCAGCAGCTGCTCC CGCGAAGGTTACGGTACCAGCTCCATCGGTCTCCGGGGGGGATACACTTTCCAAGCAGATTGATG ATCAAGCACTTCTTGTGAGAGAGTTGAAGATGAAAGACGCTAAATCTCAAGAAACCAAGGACGCC ATCGCAAAACTGTTGCAGTTGAAGAAACAGTACAAGGATGCGACCGGTTCGGATTATAAGCCAGC TCCAGCTCAATTGGCAGCTTCAGCCGCCGCCGCACCAGCTCCAGCTCCAGCTTTCGACGAAGCTG CGCTTCTCAAGGAAATTGAAGAGCAAGGAGCAGTTGTCCGTGACG Right flanking sequence: Indices 10348762 -- 10349261 GGTATGTCCCCCATTTATTCACCAATGAAATCAACATTTATTTCGTTTTCAGCAAGATTCCGCCG ATGCCATTAACAAGCTTCTGGCTTTGAAGGCTAATTTCAAGAAAGCCACTGGAAAAGACTTCCCA GCTCCATCGAATGCTCAATCGAAGAAAGGAAAGAAGAAGTAAATTTAGGTGCTATATACACGTTT TGGTTTTGTTGTTTTTCAGTTATTTAAGTTGAATTTTAAATAAAGTTTATTGCAATTTTTATTCA TTTCAAGCTTTCCCATAATATAGGTTGATCATTCCCAATTGTTATTATTTTATCCTTTGTATCAT TTTTTGATGATTTAAACTCAACGTAATGAATTAAGAACGAATGAGTCGATAGAAGCACTGAAAAA TGAAGAAATGGCTAGTTATAGTATTAATTATCGCTGGAATACGATGCGACGGATTTTCGGATCAA GTTTTCCGAACTCTGTTCATTGGAGAAGGAAATGCGTGCTATAGA Found at i:10351137 original size:10 final size:9 Alignment explanation
Indices: 10351104--10351136 Score: 43 Period size: 8 Copynumber: 3.7 Consensus size: 9 10351094 TAAAATGGCC * 10351104 CAAAAATTC 1 CAAAAATTT 10351113 CTAAAAATTT 1 C-AAAAATTT 10351123 C-AAAATTT 1 CAAAAATTT 10351131 CAAAAA 1 CAAAAA 10351137 AAAAAATAGT Statistics Matches: 21, Mismatches: 1, Indels: 4 0.81 0.04 0.15 Matches are distributed among these distances: 8 8 0.38 9 5 0.24 10 8 0.38 ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27 Consensus pattern (9 bp): CAAAAATTT Left flanking sequence: Indices 10350604 -- 10351103 ATATGCCAGACGAGCTATAATTTCCTAATTTTAAAAAATAAATTGTCCAACTCAATGCCTCAATA GTTGAAGTTTTCCAGAGATGCTCCTCAACTCTGTGGTGCAATGCACAGTGACAATATATTTGCAT TTCCAACTCCAATTCCAACTTCTCCAACAAATGAGACAATAATCACGAGCAAATATATGATGGTA ACTGCTCGAATGGACAGTTTTGGAATGATTCCAGAGATTTCTGTTGGCGAAGTATCCGTACTAAC TTCAATTATTTCTGTACTCGCAGCAGCTCGATCAATGGGAACACAGATCGAAAAATGGCAGAAAG CATCGAATACTTCGAATCGTAATGTTTTCTTTGCTTTTTTCAATGGTGAATCGTTGGATTATATT GGAAGTGGTGCGGCTGCGTATCAGATGGAGTAAGTTGGAAAATTTAATTTAAAAAACGTTCTAGA ACTAGTAACTGATCAAAAAAATTTCCCTATTAACATAAAATGGCC Right flanking sequence: Indices 10351137 -- 10351636 AAAAAATAGTTCGGGCAAAAAACATAATTCTAGCTGAAACCTCAAATTTGGCAAGCTTTTCAGGC TCGTAACATATTTTTGGAAGTCGTCAATCAAAAAATAATTCAGTTTTATTCATTTATGATAATTA ATTAAAATTTTCCAACATTGTTTGAAAATTTTTATAATGATATTTGGTCATTTTACCATAATTGG AATGGTTTTCAATTATTTTCCCACTCTTCCTTTAGAGAAAAAATATATTTGTCTTCAGAAATGGA AAGTTCCCACAAATGATTCGCTCTGATCGAACACACATTCATCCAATTCGCCCGAATGAGTTAGA TTATATACTGGAAGTACAACAAATTGGAGTTGCTAAAGGACGAAAATATTATGTACACGTTGATG GAGAACGATATCAACAGAATAAGACACAGACAGATCGAGTTATTGATCGAATTGAACGAGGTCTT CGTAGTCATGCTTTTGATCTTGAAAAACCATCTGGAAGTGGAGAT Found at i:10351700 original size:9 final size:9 Alignment explanation
Indices: 10351688--10351705 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 10351678 CAGAAAACGA * 10351688 AAAGCTTTT 1 AAAGCATTT 10351697 AAAGCATTT 1 AAAGCATTT 10351706 TCTTTAAAAA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39 Consensus pattern (9 bp): AAAGCATTT Left flanking sequence: Indices 10351188 -- 10351687 CAAGCTTTTCAGGCTCGTAACATATTTTTGGAAGTCGTCAATCAAAAAATAATTCAGTTTTATTC ATTTATGATAATTAATTAAAATTTTCCAACATTGTTTGAAAATTTTTATAATGATATTTGGTCAT TTTACCATAATTGGAATGGTTTTCAATTATTTTCCCACTCTTCCTTTAGAGAAAAAATATATTTG TCTTCAGAAATGGAAAGTTCCCACAAATGATTCGCTCTGATCGAACACACATTCATCCAATTCGC CCGAATGAGTTAGATTATATACTGGAAGTACAACAAATTGGAGTTGCTAAAGGACGAAAATATTA TGTACACGTTGATGGAGAACGATATCAACAGAATAAGACACAGACAGATCGAGTTATTGATCGAA TTGAACGAGGTCTTCGTAGTCATGCTTTTGATCTTGAAAAACCATCTGGAAGTGGAGATAGGTGG GTGCATCGAAAATAGTTTTTTTTTTCAAGAACATACAGAAAACGA Right flanking sequence: Indices 10351706 -- 10352205 TCTTTAAAAATTAAAACAATTTGAGCATATGTAAACTACAATTCCGAGTGTCGTTTTTCGAAAAA AGTCTAAAATTAAAAAAAAGCTTATCGCTCACTATTTTTCGAAAATAAGGTATTTTTCCTTTAAT AAAGGCAAACGAAAAATCTTCAGCCATGGATAGGTGAATTATAGAAATAATTTTCAAAAATTTTC CTTTTTCAGAGTTCCACCCGCAAGTTGGCACTCGTTTGCCAAGGCTGATGCTCACGTTCAATCAG TTCTCCTTGCACCATATGGTAAAGAATATGAATATCAACGAGTTAATTCAATTTTGGATAAAAAT GAGTGGACAGAAGACGAACGAGAGAAAGCAATTCAAGAGATTGAAGCTGTTTCTACTGCTATTCT GGCAGCAGCCGCTGATTATGTTGGAGTTGAAACTGATGAAGTTGTTGCAAAAGTTGATAAAAAAT TGGTATGTATTCTTTTTTTTTTTAATTTTAAAACTTTCAGCGACA Found at i:10352601 original size:7 final size:7 Alignment explanation
Indices: 10352589--10352603 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10352579 AACATTGAAT 10352589 GTGAAAA 1 GTGAAAA 10352596 GTGAAAA 1 GTGAAAA 10352603 G 1 G 10352604 AGCTGCTCAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.53, C:0.00, G:0.33, T:0.13 Consensus pattern (7 bp): GTGAAAA Left flanking sequence: Indices 10352089 -- 10352588 CTATTCTGGCAGCAGCCGCTGATTATGTTGGAGTTGAAACTGATGAAGTTGTTGCAAAAGTTGAT AAAAAATTGGTATGTATTCTTTTTTTTTTTAATTTTAAAACTTTCAGCGACAATTTAGATGTTTT ATTGTTGAATTTGAAATTTGCAGTATTTTTAAATACTTAAAACAAAATCCCTGATGACGCAGCGA TTCATCGCTGTATTTTCTAATTGCTGAAATTGAATTCCATATATATGGAATATTTCATATCTTTA CATATAAACGTTTTTTTTTTTCAGATAACCACTATATTCGATTGTCTCATCACTTCCAATTTCTG GTTCGACTGTGATTTTATGCAAAAACTCGATGGCGGTCGCTACCACAAGCTGTTTAATTCCTACG GTTTTAATCAAAAATCAACATATATTTCAATGGAATCCCATACTGCATTCCCTACCGTACTCCAT TGGTTAACTATTTTCGCTTTGGGTAGTGACAAAGAAACATTGAAT Right flanking sequence: Indices 10352604 -- 10353103 AGCTGCTCACATCTTGGTCAATTTCAAGCGGTGAGTTTTTATTTTAAACGAATATCAAATAATTA AAATAGTTTTCCGCCAGTTTCAGATGTATACCTACACGTGGCAACCGAATCCGTACACCGGAAAT TTCAGTTGTCTGAAATCTGCAATTGTTAAAAAAGTAATGGTTTCGCCGGCTGTAGATTCTCAAAC ACCCGAAGAAGAAATGAACACGAGATATTCAACATGGATGGAATCAGTTTATATTATTGAATCTG TGAATTTATATTTGATGGAAGATGCTTCATTTGAATATACAATGATTCTGATTGCGGTTATTTCT GCTTTATTATCAATCTTTGCAGTTGGTTAGTTTTTTTTTCAAAAAAAAAATTACAAAAATAAATC ACAAGCTTTCGAGCTTTCTCGTATTCGAAAATGAAGGAGTTTCGCATTAAAGAAAACTAGATTTT GAATCAGTTTTTCTAATCTTTAGAGAAATTATACTCACATTTGAT Found at i:10353435 original size:7 final size:7 Alignment explanation
Indices: 10353423--10353439 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 10353413 GTCTGGATAA 10353423 TATCGTT 1 TATCGTT 10353430 TATCGTT 1 TATCGTT 10353437 TAT 1 TAT 10353440 TGAAGGAAGT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.18, C:0.12, G:0.12, T:0.59 Consensus pattern (7 bp): TATCGTT Left flanking sequence: Indices 10352923 -- 10353422 ATTTCTGCTTTATTATCAATCTTTGCAGTTGGTTAGTTTTTTTTTCAAAAAAAAAATTACAAAAA TAAATCACAAGCTTTCGAGCTTTCTCGTATTCGAAAATGAAGGAGTTTCGCATTAAAGAAAACTA GATTTTGAATCAGTTTTTCTAATCTTTAGAGAAATTATACTCACATTTGATGCCCAGAAAAGTTT GCGACTTTTGAGCCAAAAGCACGGTGCCAGGTCTCGACACGAAAAATTTATATTAATTGAAAATA TGTTTGCGCCTTTAAATGGTACTGTATTTTCGAATTCTCATTGCTGGCGATTTAAAAAAATGCAT TTTTTAAATCCATAAAAGTTGAGAAAAATCGATGAAAAATTGCACAGAAATGAGTGCAAGAAATT ACAGTATTCTTTAAAGGCGCACACCTTTTCGCATTTCACAAAATTTCATCGTGTCGATACCGGGT ACCGTATTTTGGAGGCAAAAATCGCAAAATCTCGCGTCTGGATAA Right flanking sequence: Indices 10353440 -- 10353939 TGAAGGAAGTTTTTAAAAATAAGAAAAATTGACAGCTGCGAGAAATTATGCATAATTTATAAAAC AATAAAAATTTTTTTTTTCAGGTCGCTGTTCTGAAACAACATTTATCGTTGACGAGGGAGAACCA GCAGCGGAAGGAGGAGAACCTCTTTAACAAATTATTCTCTTCAACAATGTATCATAAATTGATTA ATTTATTTAATATTTATATTCGAAAAAATGTTCCCATTTTTGATCTCAATTTGCCCATTTCCCCT AATTTCTTCAGTTTGCATATCTTTTTGCTTTTTGCTCTTCTTGTAAATTTCTATAAAATTTGAAA ATTACCAAACAATTTCTAATTTATCTGCTTTTGGGTTCAATCCCTAATTATTGTTTTCCAGATCA TTTCGGAGATTCCAATGTTTTCGTTTTCAGATAAATGAGCAAAGAAGAGCCGAGCTTGAAAAGCG AGCGTCGAAAGTGTTACGAAGTATATTAAAAAATAACCAGATTTA Found at i:10353732 original size:7 final size:7 Alignment explanation
Indices: 10353720--10353735 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10353710 GTTTGCATAT 10353720 CTTTTTG 1 CTTTTTG 10353727 CTTTTTG 1 CTTTTTG 10353734 CT 1 CT 10353736 CTTCTTGTAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.19, G:0.12, T:0.69 Consensus pattern (7 bp): CTTTTTG Left flanking sequence: Indices 10353220 -- 10353719 TCATTGCTGGCGATTTAAAAAAATGCATTTTTTAAATCCATAAAAGTTGAGAAAAATCGATGAAA AATTGCACAGAAATGAGTGCAAGAAATTACAGTATTCTTTAAAGGCGCACACCTTTTCGCATTTC ACAAAATTTCATCGTGTCGATACCGGGTACCGTATTTTGGAGGCAAAAATCGCAAAATCTCGCGT CTGGATAATATCGTTTATCGTTTATTGAAGGAAGTTTTTAAAAATAAGAAAAATTGACAGCTGCG AGAAATTATGCATAATTTATAAAACAATAAAAATTTTTTTTTTCAGGTCGCTGTTCTGAAACAAC ATTTATCGTTGACGAGGGAGAACCAGCAGCGGAAGGAGGAGAACCTCTTTAACAAATTATTCTCT TCAACAATGTATCATAAATTGATTAATTTATTTAATATTTATATTCGAAAAAATGTTCCCATTTT TGATCTCAATTTGCCCATTTCCCCTAATTTCTTCAGTTTGCATAT Right flanking sequence: Indices 10353736 -- 10354235 CTTCTTGTAAATTTCTATAAAATTTGAAAATTACCAAACAATTTCTAATTTATCTGCTTTTGGGT TCAATCCCTAATTATTGTTTTCCAGATCATTTCGGAGATTCCAATGTTTTCGTTTTCAGATAAAT GAGCAAAGAAGAGCCGAGCTTGAAAAGCGAGCGTCGAAAGTGTTACGAAGTATATTAAAAAATAA CCAGATTTAGAATATTTTATTGATTTTCAGGCCCGTGATCAATACGCAGCTTGTATCGACAAATT TTTGAGTCAGGGGAAAAGCGAAAAAGAGGTCTCGAACAGATTTTCAGAGACTGAATTCAGCTGAA TTTTAATGATTGTTATAGGCTACAAACTCGTGCCGTTCCGAGCGTAAGAACTTTGACGGAAATTG TCCAACTTCTTGGGTCAATCATTTCATAAGAAAAGATCAGTTTGAGAGGTTTGAAAGAATTCAGA AAATATCGGACAGCAACATAAAACTTTAATTTTTCAGATACAAGA Found at i:10354579 original size:8 final size:8 Alignment explanation
Indices: 10354568--10354584 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10354558 CTTTTTCTGA 10354568 ATAATTTT 1 ATAATTTT 10354576 ATAATTTT 1 ATAATTTT 10354584 A 1 A 10354585 GGTGTAACTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (8 bp): ATAATTTT Left flanking sequence: Indices 10354068 -- 10354567 GATTGTTATAGGCTACAAACTCGTGCCGTTCCGAGCGTAAGAACTTTGACGGAAATTGTCCAACT TCTTGGGTCAATCATTTCATAAGAAAAGATCAGTTTGAGAGGTTTGAAAGAATTCAGAAAATATC GGACAGCAACATAAAACTTTAATTTTTCAGATACAAGAAAACATTGGCAGCTCAAGGAGTGAATA TTGCCGATCATAATGCTCTCAATGATTAGATCAATTCGCTCTATTTCTACAACTTCTTCGTGCCT TTTTCCTACTTTAAATTCGCCATTTCCTCGTCCTGAAATTCTCGAAATGTCACCTAAATACCAAT TTCTAACTACTACGACACCACAAATTAACGGGACAACTGAACTTCAGTCAATGCTTTCGGAAGTT TTACGGTTTAGATATTAGATTTTTTAAATAGCAATTGCTGTAGTTTTCAGATCGATTTTGCATAC TTTTTTTTGAAATTGTTTAGAAATAAAATGTTTCCCTTTTTCTGA Right flanking sequence: Indices 10354585 -- 10355084 GGTGTAACTCTTTCTTCGATTCGACAGTTTTCAATAATGTCGTCAAAATGGTGGAAAGTCAAAAT AGTTTTTCGAGGGATTTTGCTAATCTCACTGCAATGAGATATATCGCAGTTGTATATCATTCTAT AAATGATGAGGAAGCTCGACTAACACTGAAAAGGCTGAAAGATAACATCGAAAAATGCAAAATAC ATAAGATGCAGGAAGAACACGGTTTACATGTGGAAGTTCCAACAAATTGAAAATAGAGTAATTTT AGATAAATTTCGCATGTCGTTGGACCAAGATGCTGCAATTCCAGATTTTTCAAAGGTTATGCACA AGGTAACATATTTCTTATCTGAAATGTTTTTTTACTTTTAATACTTCAGCAAGATTTGGTGAGAT GCTATTTTCGACGAGAGCTGGCGAATAAAAAGTGGAAAACTGTGAAGTAATTGCATATTTAAATC AAATATTTCAATAATTACCATTCAACTTTTTCAGGCAACTGCTCT Found at i:10356373 original size:9 final size:9 Alignment explanation
Indices: 10356356--10356373 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 10356346 CCGAATGTTC * 10356356 TCCATGAAT 1 TCCACGAAT 10356365 TCCACGAAT 1 TCCACGAAT 10356374 CTGAAAATTA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28 Consensus pattern (9 bp): TCCACGAAT Left flanking sequence: Indices 10355856 -- 10356355 CAATCTGTAATGGTGATCAAAAGTTGGAGAAAATTTTCGACGATTTTCTCACTGATGCATCACAT CGACACTTCCATGGCCGAATCGAGACGAGACGGAATTTCAATATTCGAATTCGTAATCCGGATAA TAGAATATGGATACTGCCCGTTATGAACTCAGAAGGAAAGCTGTCGAGAAACATTAAACGTTATA AAGTTGAAGTTTTTAGAAATAGTTGATATACGTGTTTCTAATTGTGTATTGTTTTTGTCATGTAA TAAACACACTATTCATGATCCTCGATTTAATTTTTTTTGACTTTGAAAAGAATATAAAACTATCT ACTAAAATTTATTCCAAATCAGAAATTGAAAGTGATCTTCTTAGGCGGCGGCCTTCTCCAATTCA ATCAACTTCTTCAATCCATCGTACATCTGACGAACTGCTTGATACTCGGTAAGCCCAAGACGCTG CTTGTTCGAGATGTCATAGATTCCTTCCTTCGATTCCGAATGTTC Right flanking sequence: Indices 10356374 -- 10356873 CTGAAAATTATAATTTGAAAACTGAAATAAAACTTTAAAAATACCTGAAGCTTCATGTCACTGCA AATCTTCTTGAAATCGTCCTTTGCCGAGATCTTTGGCAGCTTAATGTGAACCGATGCACGAACAG TTGTTCCCAAGTTGGTTGGACAGAAGGTGAGCCATCCGAGACGTGGATGACGAGCGAATGGAGCC TTGGCAGCGACGAGGTTCAGTCCTTTGATGAGTCTGGCGAGAACTTCACCAACATTTCCTCCATT TTGCATAGAGATGATACGCAAGTGATCCTCCTCGTTGACCCAAACCAAGAAAGTCTTCTTCTCAT TGTGGAAGATTCCACGTCCGTTTGGCCAATAACGGTTGGCATTGGCAGCCTTCAAGAAGCGATCA CCTTCTTTGAAGAGGAAGTGATCAGCAATGAGCTTCTTCTTCGTCTCCTCATCCATTCCAGTCAG AGGGTAGTACGTTCCCTTGAGCTCGGGATCGGTGATGCTGTTGAA Found at i:10357783 original size:7 final size:7 Alignment explanation
Indices: 10357771--10357786 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10357761 AAATGTTCGG 10357771 AAGAAAA 1 AAGAAAA 10357778 AAGAAAA 1 AAGAAAA 10357785 AA 1 AA 10357787 AAACAAGTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (7 bp): AAGAAAA Left flanking sequence: Indices 10357271 -- 10357770 TTGTTCTTGGCGACAACGTCCTTTGTCAAGTGCTTCTTGAGAAGTGACGAGCAGTCAGAAGCTCC TTGGAGTTTCGTGTAGACCTGGAAACAAAAACAAACGTTAAGAACTTGAAAACTTAAGAAAACTC ACTTCTTCAATCGATTTCTGAACTTCCGGGGTCGCTGTCATATTCGATGATGAAACGTGTAACAG GCGGTTCGTTCTTTGAAGAGCTGAAGCTGTTAGACTGATGATTTTTGGAAACGAAGCCCTTTTAT ACAGACGATAATGTGGCAGAACGTGGGACCGTGACATTCTATATAATACAGTGAAAATGTATTTT GAAAGTTCAAATTACATCGGAGTTCTTAAAAAAAAACTTCACGTATTCATAATTAAACATATTTT TGGGGTATAGCCCGCTATAGCGCCAGTGGGGAAATTGGTTTAAAGCACGCCTATGATACAATTTT TTGAAAGTCGATAAAATCTCAGTTTTTTCTTAATTAAATGTTCGG Right flanking sequence: Indices 10357787 -- 10358286 AAACAAGTTAAATGCAATTTTCAATAAAAAAAACGGTAAACTGTAAAACAAACTACTTTCAGATT CGTCGTCACCGGAACGTATAATTTTACACTTGCACGCGTTTTCAGTTAACTTTTAATGATCAATT TGCATTTAACCTGCTTTTTTCTTTTATTTTCAGAAAAGAATATACAAAAAATGAAAAATTCAAAG AAATAATGAGAGAAAAAGTAAATAAATGATGAAATGAAAATAATGCAAGCGCGCTCTATCGAACA AACAGTTTGGCGGCAGGTTCAATTTAATTGTCAAAAACTGATATTTTTCTGAGATCAATTTTTAA TAGATCATATGCAATTAAGAAAAAATTGTTGAATTAAAAAAAAAATACTCGGTCATTGTATACAA TGGTACTACAATTGTAGTACCATATGCGTGTATTACAGAAATTTTCCCACTGGCACTGGCGCTGG ATAGGGCTACTTCAGATTTTTTGTTGGTATACTTATGTGTTTTTC Found at i:10357789 original size:10 final size:10 Alignment explanation
Indices: 10357770--10357789 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 10357760 TAAATGTTCG * 10357770 GAAGAAAAAA 1 GAAAAAAAAA 10357780 GAAAAAAAAA 1 GAAAAAAAAA 10357790 CAAGTTAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (10 bp): GAAAAAAAAA Left flanking sequence: Indices 10357270 -- 10357769 CTTGTTCTTGGCGACAACGTCCTTTGTCAAGTGCTTCTTGAGAAGTGACGAGCAGTCAGAAGCTC CTTGGAGTTTCGTGTAGACCTGGAAACAAAAACAAACGTTAAGAACTTGAAAACTTAAGAAAACT CACTTCTTCAATCGATTTCTGAACTTCCGGGGTCGCTGTCATATTCGATGATGAAACGTGTAACA GGCGGTTCGTTCTTTGAAGAGCTGAAGCTGTTAGACTGATGATTTTTGGAAACGAAGCCCTTTTA TACAGACGATAATGTGGCAGAACGTGGGACCGTGACATTCTATATAATACAGTGAAAATGTATTT TGAAAGTTCAAATTACATCGGAGTTCTTAAAAAAAAACTTCACGTATTCATAATTAAACATATTT TTGGGGTATAGCCCGCTATAGCGCCAGTGGGGAAATTGGTTTAAAGCACGCCTATGATACAATTT TTTGAAAGTCGATAAAATCTCAGTTTTTTCTTAATTAAATGTTCG Right flanking sequence: Indices 10357790 -- 10358289 CAAGTTAAATGCAATTTTCAATAAAAAAAACGGTAAACTGTAAAACAAACTACTTTCAGATTCGT CGTCACCGGAACGTATAATTTTACACTTGCACGCGTTTTCAGTTAACTTTTAATGATCAATTTGC ATTTAACCTGCTTTTTTCTTTTATTTTCAGAAAAGAATATACAAAAAATGAAAAATTCAAAGAAA TAATGAGAGAAAAAGTAAATAAATGATGAAATGAAAATAATGCAAGCGCGCTCTATCGAACAAAC AGTTTGGCGGCAGGTTCAATTTAATTGTCAAAAACTGATATTTTTCTGAGATCAATTTTTAATAG ATCATATGCAATTAAGAAAAAATTGTTGAATTAAAAAAAAAATACTCGGTCATTGTATACAATGG TACTACAATTGTAGTACCATATGCGTGTATTACAGAAATTTTCCCACTGGCACTGGCGCTGGATA GGGCTACTTCAGATTTTTTGTTGGTATACTTATGTGTTTTTCATA Found at i:10357827 original size:7 final size:7 Alignment explanation
Indices: 10357817--10357833 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10357807 TCAATAAAAA 10357817 AAACGGT 1 AAACGGT * 10357824 AAACTGT 1 AAACGGT 10357831 AAA 1 AAA 10357834 ACAAACTACT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18 Consensus pattern (7 bp): AAACGGT Left flanking sequence: Indices 10357317 -- 10357816 ACGAGCAGTCAGAAGCTCCTTGGAGTTTCGTGTAGACCTGGAAACAAAAACAAACGTTAAGAACT TGAAAACTTAAGAAAACTCACTTCTTCAATCGATTTCTGAACTTCCGGGGTCGCTGTCATATTCG ATGATGAAACGTGTAACAGGCGGTTCGTTCTTTGAAGAGCTGAAGCTGTTAGACTGATGATTTTT GGAAACGAAGCCCTTTTATACAGACGATAATGTGGCAGAACGTGGGACCGTGACATTCTATATAA TACAGTGAAAATGTATTTTGAAAGTTCAAATTACATCGGAGTTCTTAAAAAAAAACTTCACGTAT TCATAATTAAACATATTTTTGGGGTATAGCCCGCTATAGCGCCAGTGGGGAAATTGGTTTAAAGC ACGCCTATGATACAATTTTTTGAAAGTCGATAAAATCTCAGTTTTTTCTTAATTAAATGTTCGGA AGAAAAAAGAAAAAAAAACAAGTTAAATGCAATTTTCAATAAAAA Right flanking sequence: Indices 10357834 -- 10358333 ACAAACTACTTTCAGATTCGTCGTCACCGGAACGTATAATTTTACACTTGCACGCGTTTTCAGTT AACTTTTAATGATCAATTTGCATTTAACCTGCTTTTTTCTTTTATTTTCAGAAAAGAATATACAA AAAATGAAAAATTCAAAGAAATAATGAGAGAAAAAGTAAATAAATGATGAAATGAAAATAATGCA AGCGCGCTCTATCGAACAAACAGTTTGGCGGCAGGTTCAATTTAATTGTCAAAAACTGATATTTT TCTGAGATCAATTTTTAATAGATCATATGCAATTAAGAAAAAATTGTTGAATTAAAAAAAAAATA CTCGGTCATTGTATACAATGGTACTACAATTGTAGTACCATATGCGTGTATTACAGAAATTTTCC CACTGGCACTGGCGCTGGATAGGGCTACTTCAGATTTTTTGTTGGTATACTTATGTGTTTTTCAT AAATTAAAAAATTACACAGCAACTTTTCAAAGTTTATATAAAAAA Found at i:10359487 original size:7 final size:7 Alignment explanation
Indices: 10359475--10359488 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10359465 CTAACCTGAA 10359475 TAGATTT 1 TAGATTT 10359482 TAGATTT 1 TAGATTT 10359489 ATTTTAAAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): TAGATTT Left flanking sequence: Indices 10358975 -- 10359474 AGCCTACTTTCCTCTAGAAACACTGCTTAATGTTCAAATTACGTAACTTACCGTAATCCAGTTCT TCCAGAAGACTATAGAAAAGTGTTTGGAACGGTTGAAACCTGTCACTTTTTCTTATCATTTCACA CATTCACAATTTCTTCCATCATTTCCCCGGACTTTCTCTTCTTTAGGATACTATCCTTCTCCTTA ACCCAATAACTTCTCCTTTTTTCCAGTCTCCCATTTTTCCGTTATCCGTATTCTTTCCCTTTCTT ATCTTTTTGTCCCTCATTTTCCACTCATAGTCGTCATCAGGCGGCATCTATCAGATCCAGTTTGC CAACACACGCGGGAAAACGAAAAAACCAAAGAAGAATAAGAAAATGGCAGAAAAGAGATTTTTGT ATGTGTGTTTGTGTGTGTGTCCTGTGTGTATGTCTGCCAATGTCTGTTGCAGATGCTACTGTTGT TTTATGCTTACTCTTTTATTTTAATAATCTATTAACTAACCTGAA Right flanking sequence: Indices 10359489 -- 10359988 ATTTTAAAAGAGTTTTGTGCTCTTAAAATTAAATTCACAGTCAGAATAGTCTACACATTTTGGCC TTTGCTTTGTTTAAATTTTGTGCTCACAACATCTTTCAAAAACAGAGCGCAGAGTGTCTGAAAAT ATTGTTAAATCAGTTTCTAGAAATATACCTCGTATTTGCCTGCCTACGTGGTTGCCTGCCTATCA CCTATTCTCAGCAGAATTTCGGCATTTTGTAACCGTAGAGTATGTTTAGATTTCTAATTCCCAGT TCATTTGTTGGAATTTTAAGAACTGCGTGTAGGCGCAACGCAGGCGTAGGTAATATTGAAGGCCT ATGGTCAAGCTTTTTGTGGCTTTGACAATTTGATAAGTTGAAAAATATAAATAACGAGCAATATG TATTTCTCACCAATTTTCTGAATTTCAGTAACTTTACAATAAAAAATATATATTTTAAACAAAAC ACAACAATCATTCTTCTACTCTTCTTTTTTTCAATACTTCCAAAA Found at i:10359845 original size:8 final size:8 Alignment explanation
Indices: 10359834--10359854 Score: 28 Period size: 8 Copynumber: 2.6 Consensus size: 8 10359824 TTTTTGTGGC 10359834 TTTGACAA 1 TTTGACAA * 10359842 TTTGATAA 1 TTTGACAA * 10359850 GTTGA 1 TTTGA 10359855 AAAATATAAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43 Consensus pattern (8 bp): TTTGACAA Left flanking sequence: Indices 10359334 -- 10359833 AATAAGAAAATGGCAGAAAAGAGATTTTTGTATGTGTGTTTGTGTGTGTGTCCTGTGTGTATGTC TGCCAATGTCTGTTGCAGATGCTACTGTTGTTTTATGCTTACTCTTTTATTTTAATAATCTATTA ACTAACCTGAATAGATTTTAGATTTATTTTAAAAGAGTTTTGTGCTCTTAAAATTAAATTCACAG TCAGAATAGTCTACACATTTTGGCCTTTGCTTTGTTTAAATTTTGTGCTCACAACATCTTTCAAA AACAGAGCGCAGAGTGTCTGAAAATATTGTTAAATCAGTTTCTAGAAATATACCTCGTATTTGCC TGCCTACGTGGTTGCCTGCCTATCACCTATTCTCAGCAGAATTTCGGCATTTTGTAACCGTAGAG TATGTTTAGATTTCTAATTCCCAGTTCATTTGTTGGAATTTTAAGAACTGCGTGTAGGCGCAACG CAGGCGTAGGTAATATTGAAGGCCTATGGTCAAGCTTTTTGTGGC Right flanking sequence: Indices 10359855 -- 10360354 AAAATATAAATAACGAGCAATATGTATTTCTCACCAATTTTCTGAATTTCAGTAACTTTACAATA AAAAATATATATTTTAAACAAAACACAACAATCATTCTTCTACTCTTCTTTTTTTCAATACTTCC AAAAAGTTTTCCATTCAATTTCTGATATCATTCGTCTAAATTCCTATCTGTCCTATTTGCTTGAA CTACTCCAAGTGTTATCCTCAAAAAAAAAGTTCGCAAGGAAACCAAAAATTTTATTGGTTGCCAA ATTGGTTGATAAGGATCTATCTGCGAAGTTCTCTGTCATGATCTTGATCTTTACGATGTTATTGT TTGAAATTGGTTATGGCAAAAGAAAAGGAACATTGTGATAACTTTGAGTAATTGATATTTCAAAC TTTTCAAAATAAAATTGAGAAAGTACCCTAACTATGAACAATTTATTTTGAAATCAAGGCAAATA CATAGTTTCTTTTAAAAATTTTACCGCGGAGCAACTTTCGCCCGA Found at i:10360564 original size:9 final size:9 Alignment explanation
Indices: 10360550--10360568 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 10360540 CAAAAATATT 10360550 TGCTAAAAA 1 TGCTAAAAA 10360559 TGCTAAAAA 1 TGCTAAAAA 10360568 T 1 T 10360569 ATCTGCCTAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26 Consensus pattern (9 bp): TGCTAAAAA Left flanking sequence: Indices 10360050 -- 10360549 CTACTCCAAGTGTTATCCTCAAAAAAAAAGTTCGCAAGGAAACCAAAAATTTTATTGGTTGCCAA ATTGGTTGATAAGGATCTATCTGCGAAGTTCTCTGTCATGATCTTGATCTTTACGATGTTATTGT TTGAAATTGGTTATGGCAAAAGAAAAGGAACATTGTGATAACTTTGAGTAATTGATATTTCAAAC TTTTCAAAATAAAATTGAGAAAGTACCCTAACTATGAACAATTTATTTTGAAATCAAGGCAAATA CATAGTTTCTTTTAAAAATTTTACCGCGGAGCAACTTTCGCCCGAAATCTTTTGGTAATTTCAAA ATTTATTAAAATCCGCAGTTACAAAGCCTTAAAGATGTCACTGAAATGTCACTGAAAATTAAAAA ATTACACTATTTCGCAAAAAAAAAAACACACACACCAAAACATGAGTTTAACAATCTCCAGAACT TCGGCAACTTGGCTGCCGCAATAATTGCTGGTTTTCAAAAATATT Right flanking sequence: Indices 10360569 -- 10361068 ATCTGCCTACCTACCATTAAACTCTACTCCCCCTTCCTATCAAACTTTATACTTTTCCAAACCAC AATAAGTGAAAACCGTGTATTACATTACTTTTGGGGGATCAAAAAGTTAAATATATTACTACGCG TCTTCCTTGTTCAAAGCATAATCGTGTCTTGAACTTCACTTTCTAAGAATAGAGAGGAAAGAGGC GGAGTCAGACACTTTAATTCACTTTCAGTCAAATGACCCTCTCAAGATGGGAAGAAAGAGGTACA TGTAGAGTTTCAAGAATTTACGAAAGTAATCACACATTACTATTTTATAGTGGAGGTTAGAAAAA AAACTCTGAAAAGTTACTCATAAGTTAGGCTATGCAATTTTGGAAATTATTTTGGTACAAGCATT CACCGGTTCTACATTCAATTTTTTTAAAGAAATTTCAAAAAGTTATGAAGAACGAGCTTAACAGA TTTCTAGGCCACTGATGACGTCACCTTTGTACTGAATATAGCTCG Found at i:10361278 original size:8 final size:8 Alignment explanation
Indices: 10361265--10361281 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10361255 AGCCCTCTGC 10361265 ATAAATCA 1 ATAAATCA 10361273 ATAAATCA 1 ATAAATCA 10361281 A 1 A 10361282 GGGAATATAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24 Consensus pattern (8 bp): ATAAATCA Left flanking sequence: Indices 10360765 -- 10361264 GAGTCAGACACTTTAATTCACTTTCAGTCAAATGACCCTCTCAAGATGGGAAGAAAGAGGTACAT GTAGAGTTTCAAGAATTTACGAAAGTAATCACACATTACTATTTTATAGTGGAGGTTAGAAAAAA AACTCTGAAAAGTTACTCATAAGTTAGGCTATGCAATTTTGGAAATTATTTTGGTACAAGCATTC ACCGGTTCTACATTCAATTTTTTTAAAGAAATTTCAAAAAGTTATGAAGAACGAGCTTAACAGAT TTCTAGGCCACTGATGACGTCACCTTTGTACTGAATATAGCTCGTTTCGACGTATCAACCATCTA CGACCTTACAACCCGTGCATTAGTCTGGGTCATTTTTAGGTAAAGAAAATTTATAAAAATAACTA TTTTCCATTTATTCTCCTTCTATTAACTGTTATAACTTTCAAATATAATTCCAGATCTCTAGTAT TATGACTGATTATCTGCGTGGTTCCTGTTTTTTCTAGCCCTCTGC Right flanking sequence: Indices 10361282 -- 10361781 GGGAATATATCCACAATGGTCACTTCCAAAATACAGTTCCAAAAACACTTTGTTCTAATTCTTTT TCCATCTCAAAAACCTATTCACTTATATTTTTTCAAGAGGTGCTTCTTCTTCCAAACCACCACAT TTTTGCCATTTTCCTCTTTCTTATGATTCATTCCATTCCGTTTCAATTTTCGACGACCTTCAAAA CTCTTTGAAACTATTCATTTCTGAACTTTTTCTCTCTTCTTTTTCACCTTTCACGCTAATTCAAC GAATAAGTTTTAGTTTCGGGGTCAGTTTCAGTGTAAGAAAGAATACGAAAATGACTGTTTTATGG TTATGACCTCCTCATTCGTGAGAAGAGAAACCGCATTTAGTGGAAAAAGTTCATGTATTAAGCTA CTTAAATATGAGGTTACTCCAATCACTATGAACGTCACTTTCCTTTTACCTGAAAGTGTTCCTCT GAATTTTTTAAAATTAAAAAAAAACCAACTTTTGTGCTAACTTTT Found at i:10361816 original size:7 final size:7 Alignment explanation
Indices: 10361804--10361821 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 10361794 TTTGTAATGC 10361804 TTATTTT 1 TTATTTT 10361811 TTATTTT 1 TTATTTT 10361818 TTAT 1 TTAT 10361822 GAGTTTTTCT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (7 bp): TTATTTT Left flanking sequence: Indices 10361304 -- 10361803 CTTCCAAAATACAGTTCCAAAAACACTTTGTTCTAATTCTTTTTCCATCTCAAAAACCTATTCAC TTATATTTTTTCAAGAGGTGCTTCTTCTTCCAAACCACCACATTTTTGCCATTTTCCTCTTTCTT ATGATTCATTCCATTCCGTTTCAATTTTCGACGACCTTCAAAACTCTTTGAAACTATTCATTTCT GAACTTTTTCTCTCTTCTTTTTCACCTTTCACGCTAATTCAACGAATAAGTTTTAGTTTCGGGGT CAGTTTCAGTGTAAGAAAGAATACGAAAATGACTGTTTTATGGTTATGACCTCCTCATTCGTGAG AAGAGAAACCGCATTTAGTGGAAAAAGTTCATGTATTAAGCTACTTAAATATGAGGTTACTCCAA TCACTATGAACGTCACTTTCCTTTTACCTGAAAGTGTTCCTCTGAATTTTTTAAAATTAAAAAAA AACCAACTTTTGTGCTAACTTTTGTTCTCTAAAAATTTGTAATGC Right flanking sequence: Indices 10361822 -- 10362321 GAGTTTTTCTGAACTTCCCATTCCTAAACTGAAATTATATTTTAGAGAAACTGTGTTTTTTGTTT GAAGGCTCATGGATTCAACAGTTTTTGTAGAAGTTTCAGAAAATTGCTCAGAGGGCCTCACACCG ATGCACACCTTTTTCTGACAACTATGAAATTTCAAGGCATAGGTAGGCACGGTTTTATGCCTACA TGCCTGCCTCTTGGCCTTCTGGCTTACATGATTTATGTTGCCTCAGATTCCAATTTTGAAAAATT CATAAAAAGTCTATGCCCTACCCATCATTTCATTTGATCTTTATTCAATTTCGCTCCCATGTAGA TTTTTCTCTATATGCCTACAAGCCGACCTACGCCTACACATTCTTCAAGCTTTTTAGATAAGTTC CGTATAGCTTGTTCGTTTTTTAGCTTCCATTCAAAAGTGTTTTTACGTTTCAAAACTGAAAATAC TATTTTGTTTGGTGTAATTTTTAAACTAGGTGACAGAAAAACATA Found at i:10362684 original size:7 final size:7 Alignment explanation
Indices: 10362669--10362685 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10362659 ATAACATTTG * 10362669 TTTTTAA 1 TTTTGAA 10362676 TTTTGAA 1 TTTTGAA 10362683 TTT 1 TTT 10362686 GTTCCATTCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71 Consensus pattern (7 bp): TTTTGAA Left flanking sequence: Indices 10362169 -- 10362668 CCGACCTACGCCTACACATTCTTCAAGCTTTTTAGATAAGTTCCGTATAGCTTGTTCGTTTTTTA GCTTCCATTCAAAAGTGTTTTTACGTTTCAAAACTGAAAATACTATTTTGTTTGGTGTAATTTTT AAACTAGGTGACAGAAAAACATAACAACTTAGTTTTTTTTTTTATTAGTTACGTTTTTATAGTTC TAGTACACATGCAGTTTTTATAAGGCAGAGACCAGAAGAAGGGACCTCAAATTGCCACAATTCAC TTTCATCTTTAGGCTTAAAATTCTCACAATTAGCCAGTAAAATCAATTGTATTATTTTCTCATTT AGGAGGATTTCTCCTATCGGAGATGTCTAAAAATAGTATTCAGATAAACTTAGTTGCAACAATTT TTCAATATTTGATTACTATCTTCAATACCACGTGCTACTTGCAATTGAAACTTGATGATAATAGA AAAACAAAAATGAAAACTTGATACCATCCTTTAAAATAACATTTG Right flanking sequence: Indices 10362686 -- 10363185 GTTCCATTCCCCAAGCGTTTTATTATTCCATAAAAGTTTCTTAATTTTTTGAAAAATAAATCTTA CCAATTTTTCACAATATTTTCCTACTCCTGAATATCATGCAAATCATCATTTGATTCCAAAAATC CAGTTTTGGATTTTCAGGAAAAAAAATGCTACGGCACCGTGACAAATTTGGCCCACATTCCTTGT TCGTGGCGGGACCCATCGAGTTGCGCCCCTAAAATGTCTAATCAAAACACACAATATAATACATT TAAAGTAATTGATAACACAAAAATGAAGTGCTTAAGCTATAGTGGGCAGTCTACAATTTAGTGTA AAATGAACTGATCATTATCTTTTTCTTCATCTCCATCATCATCATCTCACAATCAAAAAATCTTC TCCCCTCGTCGTATTTATTTCCTTATCACAAATTTCTTTGTATTTTCTTGCAATTTGTGAACGTT CCCCTCTTCAATTTCTTTCAATCCTTAAGTTGGCATGTCACTGAC Found at i:10364091 original size:8 final size:8 Alignment explanation
Indices: 10364078--10364094 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10364068 TAGAACAAAT 10364078 TCACTTAC 1 TCACTTAC 10364086 TCACTTAC 1 TCACTTAC 10364094 T 1 T 10364095 TAGATACTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41 Consensus pattern (8 bp): TCACTTAC Left flanking sequence: Indices 10363578 -- 10364077 TTCCCAGTCGGACATACATTTTTTTGGAATTTTAAGGGAAGCCAAAATTGCAGCCTTTGATTTTC TACCTATCACATTTATATGAGTGATATGATCTGTACTTTTTGGGGAAAAACTCTCGAGGAATCTC TTTTCCAAAATCCATTGGCAACATTGATTGTGATACGCTAGCTAATCAATTGATAAGATAATAAA AAGAACGGAGAACGAGGGAGAGAAATTGCGGAAGTGGAATTACGTAAAAGCTACTGATAAGAAGT GTTTCGGGAGACGCTTTTGATGGATTTATAGTTTTTTTTTTGCTATTAAAAGTTTGTATAAAATA TTAAGCCAACTGATTAAATGTGTGCCAAATATTTATCTTCATTTAATAACTGAAACAAACTTTTT TTTGATAAAGCTAGAGAACCAACAAGTAGATTTTAAAAGTAAAGCAGACTGATAGAAAGATACTG TAGTACTGGATTTCGTTGAATTTTAATCAAATAGTTAGAACAAAT Right flanking sequence: Indices 10364095 -- 10364594 TAGATACTTAGATTTATCCGTTTTAGTCTATTTCGTTCAGAATTTGCCATCCGGTTAAAGCATTC CAAGGGTGCCCCAGCAATCTTAAAATTATCAAAAATATCTTCCACTAGATTTCCTTTCACTCATC ATCTATACTTTGATGTTTAGTTTCATTTTTTCCAAATCTCACTACAATTTCACTATCATCTCAAT AAGTTCCAATTGAATGCGGAACCAAAACTATTGTTCCTCTCGTAGTAAGGTTTCTTGTCATTCAT AAACCTTTTGATTGTTACAGTGAAAAAACGGGCAAGAAACGAGAATAGGGGACAGGAACAGGTGG TAACAACCTGACGATGACGACGAAACGGACACGGAACACGTTGTGGCTTCTGATTTTAATTTCAG CTTTTGCAATAAATGCTGAAATTGCAGATGATAAACCTCCGTTAGTTTTTTTTTGTTGAAAAAAA ATGCTAAGAAAAATGATTGATTGAGAAAGGCAAACGTTTTAAAAG Found at i:10364102 original size:8 final size:8 Alignment explanation
Indices: 10364091--10364107 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10364081 CTTACTCACT 10364091 TACTTAGA 1 TACTTAGA 10364099 TACTTAGA 1 TACTTAGA 10364107 T 1 T 10364108 TTATCCGTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41 Consensus pattern (8 bp): TACTTAGA Left flanking sequence: Indices 10363591 -- 10364090 ATACATTTTTTTGGAATTTTAAGGGAAGCCAAAATTGCAGCCTTTGATTTTCTACCTATCACATT TATATGAGTGATATGATCTGTACTTTTTGGGGAAAAACTCTCGAGGAATCTCTTTTCCAAAATCC ATTGGCAACATTGATTGTGATACGCTAGCTAATCAATTGATAAGATAATAAAAAGAACGGAGAAC GAGGGAGAGAAATTGCGGAAGTGGAATTACGTAAAAGCTACTGATAAGAAGTGTTTCGGGAGACG CTTTTGATGGATTTATAGTTTTTTTTTTGCTATTAAAAGTTTGTATAAAATATTAAGCCAACTGA TTAAATGTGTGCCAAATATTTATCTTCATTTAATAACTGAAACAAACTTTTTTTTGATAAAGCTA GAGAACCAACAAGTAGATTTTAAAAGTAAAGCAGACTGATAGAAAGATACTGTAGTACTGGATTT CGTTGAATTTTAATCAAATAGTTAGAACAAATTCACTTACTCACT Right flanking sequence: Indices 10364108 -- 10364607 TTATCCGTTTTAGTCTATTTCGTTCAGAATTTGCCATCCGGTTAAAGCATTCCAAGGGTGCCCCA GCAATCTTAAAATTATCAAAAATATCTTCCACTAGATTTCCTTTCACTCATCATCTATACTTTGA TGTTTAGTTTCATTTTTTCCAAATCTCACTACAATTTCACTATCATCTCAATAAGTTCCAATTGA ATGCGGAACCAAAACTATTGTTCCTCTCGTAGTAAGGTTTCTTGTCATTCATAAACCTTTTGATT GTTACAGTGAAAAAACGGGCAAGAAACGAGAATAGGGGACAGGAACAGGTGGTAACAACCTGACG ATGACGACGAAACGGACACGGAACACGTTGTGGCTTCTGATTTTAATTTCAGCTTTTGCAATAAA TGCTGAAATTGCAGATGATAAACCTCCGTTAGTTTTTTTTTGTTGAAAAAAAATGCTAAGAAAAA TGATTGATTGAGAAAGGCAAACGTTTTAAAAGCTAATAAAACAGT Found at i:10364198 original size:9 final size:9 Alignment explanation
Indices: 10364181--10364198 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 10364171 CAGCAATCTT * 10364181 AAAATTATC 1 AAAAATATC 10364190 AAAAATATC 1 AAAAATATC 10364199 TTCCACTAGA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28 Consensus pattern (9 bp): AAAAATATC Left flanking sequence: Indices 10363681 -- 10364180 TTTGGGGAAAAACTCTCGAGGAATCTCTTTTCCAAAATCCATTGGCAACATTGATTGTGATACGC TAGCTAATCAATTGATAAGATAATAAAAAGAACGGAGAACGAGGGAGAGAAATTGCGGAAGTGGA ATTACGTAAAAGCTACTGATAAGAAGTGTTTCGGGAGACGCTTTTGATGGATTTATAGTTTTTTT TTTGCTATTAAAAGTTTGTATAAAATATTAAGCCAACTGATTAAATGTGTGCCAAATATTTATCT TCATTTAATAACTGAAACAAACTTTTTTTTGATAAAGCTAGAGAACCAACAAGTAGATTTTAAAA GTAAAGCAGACTGATAGAAAGATACTGTAGTACTGGATTTCGTTGAATTTTAATCAAATAGTTAG AACAAATTCACTTACTCACTTACTTAGATACTTAGATTTATCCGTTTTAGTCTATTTCGTTCAGA ATTTGCCATCCGGTTAAAGCATTCCAAGGGTGCCCCAGCAATCTT Right flanking sequence: Indices 10364199 -- 10364698 TTCCACTAGATTTCCTTTCACTCATCATCTATACTTTGATGTTTAGTTTCATTTTTTCCAAATCT CACTACAATTTCACTATCATCTCAATAAGTTCCAATTGAATGCGGAACCAAAACTATTGTTCCTC TCGTAGTAAGGTTTCTTGTCATTCATAAACCTTTTGATTGTTACAGTGAAAAAACGGGCAAGAAA CGAGAATAGGGGACAGGAACAGGTGGTAACAACCTGACGATGACGACGAAACGGACACGGAACAC GTTGTGGCTTCTGATTTTAATTTCAGCTTTTGCAATAAATGCTGAAATTGCAGATGATAAACCTC CGTTAGTTTTTTTTTGTTGAAAAAAAATGCTAAGAAAAATGATTGATTGAGAAAGGCAAACGTTT TAAAAGCTAATAAAACAGTTGCAACTTTCAAAAAATTTCAAAAAATTTCAGAAAATTTCAAGTCC TTCGTGCCCATGCAACCGATGTTCCACAGCTGAAAGCTCTTCGTG Found at i:10364453 original size:6 final size:7 Alignment explanation
Indices: 10364444--10364459 Score: 25 Period size: 7 Copynumber: 2.4 Consensus size: 7 10364434 TGACGACGAA 10364444 ACGG-AC 1 ACGGAAC 10364450 ACGGAAC 1 ACGGAAC 10364457 ACG 1 ACG 10364460 TTGTGGCTTC Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 6 4 0.44 7 5 0.56 ACGTcount: A:0.38, C:0.31, G:0.31, T:0.00 Consensus pattern (7 bp): ACGGAAC Left flanking sequence: Indices 10363944 -- 10364443 TTTAATAACTGAAACAAACTTTTTTTTGATAAAGCTAGAGAACCAACAAGTAGATTTTAAAAGTA AAGCAGACTGATAGAAAGATACTGTAGTACTGGATTTCGTTGAATTTTAATCAAATAGTTAGAAC AAATTCACTTACTCACTTACTTAGATACTTAGATTTATCCGTTTTAGTCTATTTCGTTCAGAATT TGCCATCCGGTTAAAGCATTCCAAGGGTGCCCCAGCAATCTTAAAATTATCAAAAATATCTTCCA CTAGATTTCCTTTCACTCATCATCTATACTTTGATGTTTAGTTTCATTTTTTCCAAATCTCACTA CAATTTCACTATCATCTCAATAAGTTCCAATTGAATGCGGAACCAAAACTATTGTTCCTCTCGTA GTAAGGTTTCTTGTCATTCATAAACCTTTTGATTGTTACAGTGAAAAAACGGGCAAGAAACGAGA ATAGGGGACAGGAACAGGTGGTAACAACCTGACGATGACGACGAA Right flanking sequence: Indices 10364460 -- 10364959 TTGTGGCTTCTGATTTTAATTTCAGCTTTTGCAATAAATGCTGAAATTGCAGATGATAAACCTCC GTTAGTTTTTTTTTGTTGAAAAAAAATGCTAAGAAAAATGATTGATTGAGAAAGGCAAACGTTTT AAAAGCTAATAAAACAGTTGCAACTTTCAAAAAATTTCAAAAAATTTCAGAAAATTTCAAGTCCT TCGTGCCCATGCAACCGATGTTCCACAGCTGAAAGCTCTTCGTGATATACATGAGAGGACTCAGC ATGATGTGAGATTTTGTTTTTTAAAGTCGATTGGTAGAAGTTATAAAATGTTGAGTCCTTATTTT TAGTCGAAAAATTGCCAAAGATGCACTTAGATATTTTATTTCATTTTTCTTACAGCTTGATTTCT GGCAAACGCCGTCAAAAGTTGGCCACCGTGCTGACATAATGGTCGACGAAGATCGAATGGAATGG CTTGATTCCGTTCTGAAAAACTCAAATATCAGCTATGACGTCATT Found at i:10364629 original size:10 final size:10 Alignment explanation
Indices: 10364614--10364649 Score: 65 Period size: 10 Copynumber: 3.6 Consensus size: 10 10364604 CAGTTGCAAC 10364614 TTTCAAAAAA 1 TTTCAAAAAA 10364624 TTTCAAAAAA 1 TTTCAAAAAA * 10364634 TTTCAGAAAA 1 TTTCAAAAAA 10364644 TTTCAA 1 TTTCAA 10364650 GTCCTTCGTG Statistics Matches: 24, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 24 1.00 ACGTcount: A:0.53, C:0.11, G:0.03, T:0.33 Consensus pattern (10 bp): TTTCAAAAAA Left flanking sequence: Indices 10364114 -- 10364613 GTTTTAGTCTATTTCGTTCAGAATTTGCCATCCGGTTAAAGCATTCCAAGGGTGCCCCAGCAATC TTAAAATTATCAAAAATATCTTCCACTAGATTTCCTTTCACTCATCATCTATACTTTGATGTTTA GTTTCATTTTTTCCAAATCTCACTACAATTTCACTATCATCTCAATAAGTTCCAATTGAATGCGG AACCAAAACTATTGTTCCTCTCGTAGTAAGGTTTCTTGTCATTCATAAACCTTTTGATTGTTACA GTGAAAAAACGGGCAAGAAACGAGAATAGGGGACAGGAACAGGTGGTAACAACCTGACGATGACG ACGAAACGGACACGGAACACGTTGTGGCTTCTGATTTTAATTTCAGCTTTTGCAATAAATGCTGA AATTGCAGATGATAAACCTCCGTTAGTTTTTTTTTGTTGAAAAAAAATGCTAAGAAAAATGATTG ATTGAGAAAGGCAAACGTTTTAAAAGCTAATAAAACAGTTGCAAC Right flanking sequence: Indices 10364650 -- 10365149 GTCCTTCGTGCCCATGCAACCGATGTTCCACAGCTGAAAGCTCTTCGTGATATACATGAGAGGAC TCAGCATGATGTGAGATTTTGTTTTTTAAAGTCGATTGGTAGAAGTTATAAAATGTTGAGTCCTT ATTTTTAGTCGAAAAATTGCCAAAGATGCACTTAGATATTTTATTTCATTTTTCTTACAGCTTGA TTTCTGGCAAACGCCGTCAAAAGTTGGCCACCGTGCTGACATAATGGTCGACGAAGATCGAATGG AATGGCTTGATTCCGTTCTGAAAAACTCAAATATCAGCTATGACGTCATTATTGAAGACGTTGGA AAGTTGATTCTAGAAAAGGAACATGGCCCACCGAGATTTTCAAATTTATTATTTTCCAAAAGAAT GCACAATGAAGGAGGAAATCGAGCAAGGGTAAAAATAATAATTACAGATTTTTGTATTTAACTTT ATAATTTTTATCACAATTTTTAAAATAATTTTAGTACGGATTTGG Found at