TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:14325819 original size:7 final size:7 Alignment explanation
Indices: 14325809--14325822 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14325799 CAATGGAGCG 14325809 CGAAAAA 1 CGAAAAA 14325816 CGAAAAA 1 CGAAAAA 14325823 AAAACACACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.14, T:0.00 Consensus pattern (7 bp): CGAAAAA Left flanking sequence: Indices 14325309 -- 14325808 GTCACATTTTTGAGAAAAAAATTCCCGCATTTTTTGTAGATCAAACCGTGATGGGACATCCTGAC ATACTAAAAAACATGGATTTTGCAAAAACTTTAACTGGAAAGTATAAAAAATCTTTTTTAAAAAA CCCTAGAGTGTTTCATTATGATATTTGGTCGGATTTCTGGCTTCCCTCATAAATTGAAATGGAAG AGTTTGCCGAACTAGGCCATTTTGGATCAGCCATATCTGGGGTAGATTTACGGCGCGTCGCGGCT TGATTTTAGTTGTAAAACTAAATGTGTTTGTCCGTGTGGAGTACACACGTGGTGTCAGAAAGTCT CATTGCGGTTTCATCTGCAAAAAATGCGGGAATTTTTTCCCAGAAAAATTGTAACGTCAGCACAC CATGCGAAATCAGTTGAGATGTCTGCGTCTCACCTCCCGCATTTTACGTAGATCACGTGGAGTAC ATGACTTTCCCACGCGTTGCCCGGCGGGCAATTGTCAATGGAGCG Right flanking sequence: Indices 14325823 -- 14326322 AAAACACACATTGCAATAAAAAAATTGTTAAATTTTCAGAGTCAACTTCTCCTTAACCACTCAAA ACGCAAAGAATTCAGTGATATCTGCAGGATTAAAAGCCACTGTGAGAGCAACGCTCAAAAGCAAC TATCTGGCTATGTACTTCTGAAGATAATTTCGAGAGTCTAGAAGTGCAATTAGATCAAGCTGTAC ACCGATTTGAGCATCTCTTGGAAATATTCCATCAGACAAGACTGAAAAATCTGGATTACGTTAAC TTTGGGCCTACATTTCAAACAATCATTCAAGAATTTGATAGAATCAAGCATATCACATTGCAAGA GATTAGTCCTTTTGAATTACAGAGTATAATCCGAATGTATGGAGTTAATGTGGACTGTATGGATT TAAGCGATGTGACAATATCATACCTGTCTAATCGAAGGGATATCTTGATTCAAAATTTCCGGTGC TTCAGCTTATCCAAAAGTTTCCAGCTTAAACTTGATGACGTATTG Found at i:14326677 original size:9 final size:9 Alignment explanation
Indices: 14326663--14326684 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 14326653 CCTATGTATG 14326663 TTATTTTAT 1 TTATTTTAT * 14326672 TTATTTTTT 1 TTATTTTAT 14326681 TTAT 1 TTAT 14326685 ATTGCAAGCC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82 Consensus pattern (9 bp): TTATTTTAT Left flanking sequence: Indices 14326163 -- 14326662 ATTACAGAGTATAATCCGAATGTATGGAGTTAATGTGGACTGTATGGATTTAAGCGATGTGACAA TATCATACCTGTCTAATCGAAGGGATATCTTGATTCAAAATTTCCGGTGCTTCAGCTTATCCAAA AGTTTCCAGCTTAAACTTGATGACGTATTGCTTATTAATGCGAACAATATTGATCTTCCAAAGAG CCTAACAATAAGCCCAACTGACGCTAATTTATTCCTGCGACACTGGATCGCTGGATCACACGAGA ATCTGGTCCGTTTGGAGTTCACCCTTACCACTGAAGGAGATATTTTCCGGTTCATTAAGTTTGAG GAGACACCTTCAGAAACACGTTCTCAACTTAAAGTGATACTGGAGCACAAAAATTGCCGCTGCTC GGGGGTTGATATTCGACGGTTCGATGAGAAAATCGCTACGATTTTTGTTCATGCGAGGAAGACTG TGGAGATTTTTGTGCTGAATTGATGTTTTGTGAATCCTATGTATG Right flanking sequence: Indices 14326685 -- 14327184 ATTGCAAGCCTAATATGTTTTTTAAAAAATTTAACATTTATTTTCTGGAAGTAAAATGAAATTTT ATGATAATTTTTTTTTGTTGGAAAAATTATAAAAAAATAGAGTACCGAAATTTGAGAGTTCGCTT TTGTTAGTCCCATTGGGGTTCAAAACTACCGAATTTCGTAAGTAATGAGACGTTCTGAAAATTTT TATATACCAAAAATATGTAAAAATTCACTCTTGCAGCAATTTTACGGACAGCGAGAGCTTCTTTA TAGGCAGGTTGGCAAACAGGCACTATGTAGGCAAAACGGCACATAGCTAGGCAAGCATAATATAG GCATGTAGGAAAAAATGCGTTATTGAGGCAAGAAGGCACGCATGTAGGCAAGCAGGCGCTATAAA TCGCCCGAATCCAAGCAAAACCGGTTGGCGTAAAAATTAAAATATTTGTATATTTAAAAACTTCA AAAAAATGACGTCAATTTTTTTTTCCTAAAATTTTTTCTAAATCT Found at i:14326760 original size:11 final size:10 Alignment explanation
Indices: 14326740--14326760 Score: 33 Period size: 11 Copynumber: 2.0 Consensus size: 10 14326730 TGGAAGTAAA 14326740 ATGAAATTTT 1 ATGAAATTTT 14326750 ATGATAATTTT 1 ATGA-AATTTT 14326761 TTTTTGTTGG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 10 4 0.40 11 6 0.60 ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52 Consensus pattern (10 bp): ATGAAATTTT Left flanking sequence: Indices 14326240 -- 14326739 CTAATCGAAGGGATATCTTGATTCAAAATTTCCGGTGCTTCAGCTTATCCAAAAGTTTCCAGCTT AAACTTGATGACGTATTGCTTATTAATGCGAACAATATTGATCTTCCAAAGAGCCTAACAATAAG CCCAACTGACGCTAATTTATTCCTGCGACACTGGATCGCTGGATCACACGAGAATCTGGTCCGTT TGGAGTTCACCCTTACCACTGAAGGAGATATTTTCCGGTTCATTAAGTTTGAGGAGACACCTTCA GAAACACGTTCTCAACTTAAAGTGATACTGGAGCACAAAAATTGCCGCTGCTCGGGGGTTGATAT TCGACGGTTCGATGAGAAAATCGCTACGATTTTTGTTCATGCGAGGAAGACTGTGGAGATTTTTG TGCTGAATTGATGTTTTGTGAATCCTATGTATGTTATTTTATTTATTTTTTTTATATTGCAAGCC TAATATGTTTTTTAAAAAATTTAACATTTATTTTCTGGAAGTAAA Right flanking sequence: Indices 14326761 -- 14327260 TTTTTGTTGGAAAAATTATAAAAAAATAGAGTACCGAAATTTGAGAGTTCGCTTTTGTTAGTCCC ATTGGGGTTCAAAACTACCGAATTTCGTAAGTAATGAGACGTTCTGAAAATTTTTATATACCAAA AATATGTAAAAATTCACTCTTGCAGCAATTTTACGGACAGCGAGAGCTTCTTTATAGGCAGGTTG GCAAACAGGCACTATGTAGGCAAAACGGCACATAGCTAGGCAAGCATAATATAGGCATGTAGGAA AAAATGCGTTATTGAGGCAAGAAGGCACGCATGTAGGCAAGCAGGCGCTATAAATCGCCCGAATC CAAGCAAAACCGGTTGGCGTAAAAATTAAAATATTTGTATATTTAAAAACTTCAAAAAAATGACG TCAATTTTTTTTTCCTAAAATTTTTTCTAAATCTTGATTTAAAAAAAAACTCACTTTATTGAAAT CTAAAAAAATATAATCATTTCACAAATTTTCAATTTGTTTGGTTG Found at i:14327595 original size:11 final size:10 Alignment explanation
Indices: 14327579--14327603 Score: 34 Period size: 11 Copynumber: 2.4 Consensus size: 10 14327569 AATATGTAAT 14327579 TTTTTTATATA 1 TTTTTTATA-A * 14327590 TTTTTTTTAA 1 TTTTTTATAA 14327600 TTTT 1 TTTT 14327604 CAGAAGTCCG Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 10 5 0.38 11 8 0.62 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (10 bp): TTTTTTATAA Left flanking sequence: Indices 14327079 -- 14327578 CCGAATCCAAGCAAAACCGGTTGGCGTAAAAATTAAAATATTTGTATATTTAAAAACTTCAAAAA AATGACGTCAATTTTTTTTTCCTAAAATTTTTTCTAAATCTTGATTTAAAAAAAAACTCACTTTA TTGAAATCTAAAAAAATATAATCATTTCACAAATTTTCAATTTGTTTGGTTGTGCGTTGTGTTGA AGGTGTGCTAATATGAGTAAGGTGTGTCAATTATAGGCTAGTAGGTATGCAGGCAGGTTTTTCAT TCTAGGAAGGTGCAGTTGGGTCGAGTAAAAAAGGAGAGAATCGTCATGACAAGCTACTCGCTCCC GGGGTCCCACTGGCTCAGGATGAGCGGACTGAAAAGAATCAACTGAGAAGCGGAAAAAGTGCGCC AATATATGTTCAAGTCAATAAGAAGAAAGCTACGAAACTAGCTCAGCCGGTTCCAGTAGCTCAGG ATAGGAAGAAGAAGAAGAAGCCGAGAAGTGAGTTGAATATGTAAT Right flanking sequence: Indices 14327604 -- 14328103 CAGAAGTCCGCGACGATGACACCCTTTCAGACGTAATTATATTGGTTGAGGCTCACATCTCTCAT AGTGTCCCATTTCGGTTTGATCTACGTAGATCTACAAAAAATGCGGGAGAAGAGACGCAGAGTTC TCAACTGATTTTGTATGGTTAAGAACGTGCTCACGTGCTCACACATGCTCAGAGAACTTTTGAGC AAAAAAATCCCGCATTTTTTGTAGATCAAACCGTGATGGGACAGCTGGGCACCTTTAAATTCAAT TTCTTGTTTTTTTTCAGATTTCCGATGAGATGCCCCAAAGGGTAGCCCCTCTGGAAATCCCGAAA CCATCCTATACGGATGAACATCTCAAGTGGCTGATCCTTTGGAAAATTATTGATTCTTTGGAATA TTATAAAAAAGATTTTGAATAAAGCACATTAGATTCCCGCCCGCAAATTGTCTGTCGCTACATGT AGCCCGCTTTTACAGAAAACTATAAAGTCGGCAAAGTGCGCTCTA Found at i:14327771 original size:8 final size:8 Alignment explanation
Indices: 14327758--14327775 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 14327748 ATGGTTAAGA 14327758 ACGTGCTC 1 ACGTGCTC 14327766 ACGTGCTC 1 ACGTGCTC 14327774 AC 1 AC 14327776 ACATGCTCAG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.17, C:0.39, G:0.22, T:0.22 Consensus pattern (8 bp): ACGTGCTC Left flanking sequence: Indices 14327258 -- 14327757 TTGTGCGTTGTGTTGAAGGTGTGCTAATATGAGTAAGGTGTGTCAATTATAGGCTAGTAGGTATG CAGGCAGGTTTTTCATTCTAGGAAGGTGCAGTTGGGTCGAGTAAAAAAGGAGAGAATCGTCATGA CAAGCTACTCGCTCCCGGGGTCCCACTGGCTCAGGATGAGCGGACTGAAAAGAATCAACTGAGAA GCGGAAAAAGTGCGCCAATATATGTTCAAGTCAATAAGAAGAAAGCTACGAAACTAGCTCAGCCG GTTCCAGTAGCTCAGGATAGGAAGAAGAAGAAGAAGCCGAGAAGTGAGTTGAATATGTAATTTTT TTATATATTTTTTTTAATTTTCAGAAGTCCGCGACGATGACACCCTTTCAGACGTAATTATATTG GTTGAGGCTCACATCTCTCATAGTGTCCCATTTCGGTTTGATCTACGTAGATCTACAAAAAATGC GGGAGAAGAGACGCAGAGTTCTCAACTGATTTTGTATGGTTAAGA Right flanking sequence: Indices 14327776 -- 14328275 ACATGCTCAGAGAACTTTTGAGCAAAAAAATCCCGCATTTTTTGTAGATCAAACCGTGATGGGAC AGCTGGGCACCTTTAAATTCAATTTCTTGTTTTTTTTCAGATTTCCGATGAGATGCCCCAAAGGG TAGCCCCTCTGGAAATCCCGAAACCATCCTATACGGATGAACATCTCAAGTGGCTGATCCTTTGG AAAATTATTGATTCTTTGGAATATTATAAAAAAGATTTTGAATAAAGCACATTAGATTCCCGCCC GCAAATTGTCTGTCGCTACATGTAGCCCGCTTTTACAGAAAACTATAAAGTCGGCAAAGTGCGCT CTATCGACTAATTTTGAATAACTGAGTCGCACGTGGTGTCAGGCCGTCCCATGTCGGTTTGATCT ACTTAGATCTACGAGAATGCTGTGTGACACCGAGTTGTTCGACCAAAATATTATTAACTAGCAAA TATATCATCTTTTCTAGATTTGTAGAATCCTAGAATCCAAAGCAC Found at i:14327784 original size:10 final size:10 Alignment explanation
Indices: 14327765--14327784 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 14327755 AGAACGTGCT * 14327765 CACGTGCTCA 1 CACATGCTCA 14327775 CACATGCTCA 1 CACATGCTCA 14327785 GAGAACTTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.25, C:0.40, G:0.15, T:0.20 Consensus pattern (10 bp): CACATGCTCA Left flanking sequence: Indices 14327265 -- 14327764 TTGTGTTGAAGGTGTGCTAATATGAGTAAGGTGTGTCAATTATAGGCTAGTAGGTATGCAGGCAG GTTTTTCATTCTAGGAAGGTGCAGTTGGGTCGAGTAAAAAAGGAGAGAATCGTCATGACAAGCTA CTCGCTCCCGGGGTCCCACTGGCTCAGGATGAGCGGACTGAAAAGAATCAACTGAGAAGCGGAAA AAGTGCGCCAATATATGTTCAAGTCAATAAGAAGAAAGCTACGAAACTAGCTCAGCCGGTTCCAG TAGCTCAGGATAGGAAGAAGAAGAAGAAGCCGAGAAGTGAGTTGAATATGTAATTTTTTTATATA TTTTTTTTAATTTTCAGAAGTCCGCGACGATGACACCCTTTCAGACGTAATTATATTGGTTGAGG CTCACATCTCTCATAGTGTCCCATTTCGGTTTGATCTACGTAGATCTACAAAAAATGCGGGAGAA GAGACGCAGAGTTCTCAACTGATTTTGTATGGTTAAGAACGTGCT Right flanking sequence: Indices 14327785 -- 14328284 GAGAACTTTTGAGCAAAAAAATCCCGCATTTTTTGTAGATCAAACCGTGATGGGACAGCTGGGCA CCTTTAAATTCAATTTCTTGTTTTTTTTCAGATTTCCGATGAGATGCCCCAAAGGGTAGCCCCTC TGGAAATCCCGAAACCATCCTATACGGATGAACATCTCAAGTGGCTGATCCTTTGGAAAATTATT GATTCTTTGGAATATTATAAAAAAGATTTTGAATAAAGCACATTAGATTCCCGCCCGCAAATTGT CTGTCGCTACATGTAGCCCGCTTTTACAGAAAACTATAAAGTCGGCAAAGTGCGCTCTATCGACT AATTTTGAATAACTGAGTCGCACGTGGTGTCAGGCCGTCCCATGTCGGTTTGATCTACTTAGATC TACGAGAATGCTGTGTGACACCGAGTTGTTCGACCAAAATATTATTAACTAGCAAATATATCATC TTTTCTAGATTTGTAGAATCCTAGAATCCAAAGCACTCCTAAAAC Found at i:14328264 original size:8 final size:8 Alignment explanation
Indices: 14328253--14328268 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14328243 TCTAGATTTG 14328253 TAGAATCC 1 TAGAATCC 14328261 TAGAATCC 1 TAGAATCC 14328269 AAAGCACTCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25 Consensus pattern (8 bp): TAGAATCC Left flanking sequence: Indices 14327753 -- 14328252 TAAGAACGTGCTCACGTGCTCACACATGCTCAGAGAACTTTTGAGCAAAAAAATCCCGCATTTTT TGTAGATCAAACCGTGATGGGACAGCTGGGCACCTTTAAATTCAATTTCTTGTTTTTTTTCAGAT TTCCGATGAGATGCCCCAAAGGGTAGCCCCTCTGGAAATCCCGAAACCATCCTATACGGATGAAC ATCTCAAGTGGCTGATCCTTTGGAAAATTATTGATTCTTTGGAATATTATAAAAAAGATTTTGAA TAAAGCACATTAGATTCCCGCCCGCAAATTGTCTGTCGCTACATGTAGCCCGCTTTTACAGAAAA CTATAAAGTCGGCAAAGTGCGCTCTATCGACTAATTTTGAATAACTGAGTCGCACGTGGTGTCAG GCCGTCCCATGTCGGTTTGATCTACTTAGATCTACGAGAATGCTGTGTGACACCGAGTTGTTCGA CCAAAATATTATTAACTAGCAAATATATCATCTTTTCTAGATTTG Right flanking sequence: Indices 14328269 -- 14328768 AAAGCACTCCTAAAACTAAAAATTTAGCAGTTACACATTTTCCTGAAGTTTTCTTTTCTGGAGCC GTTCTCAAATTACTGCAACTTTCCAGAATTTTCCAGAAATTCGCTCTTTTTTCTCAAAAAATTTG AAAAATTTTAATAAAAAGTTTACCGATCCAATGAAAGCTTAAATCCCTAGCCTGTTAATCAAATC TAATTTGATAATGACAGCTTCATCATCCTCTCTCTCTCCCTGTCCTCTCCGCGCGCAAAAAAAGA TGTTTTCCCACCAGCGCGCGGGCGCCTCCGCTGCTGTCGAAATTGCCATTTTTGTAGGTCTGCGT CTCTTGGGATCAGTATGCTACCTGCAATTGGGAGTTTAAGGCACGCGCGTTCCGCAAATGTTTGC TAAACGGCGCGGCGGAGAGAGGGAGAGAGAGAGAGAGATGCCTGACCTCGGTGGACAAATAGTGA GAGGGATGAAGAGAGAATGAGACAAAAACAGTTCCCTCTTCTTTT Found at i:14332025 original size:10 final size:10 Alignment explanation
Indices: 14332006--14332026 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 14331996 AATTGGGAGA * 14332006 TTTTGATGGG 1 TTTAGATGGG 14332016 TTTAGATGGG 1 TTTAGATGGG 14332026 T 1 T 14332027 AATTTGGGAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48 Consensus pattern (10 bp): TTTAGATGGG Left flanking sequence: Indices 14331506 -- 14332005 ACTTTTTAAAATTGATTGATATCAAAAAGTTGGCAACTAGCAAACTGTAGAACATAAAATTTGCT ACAATTTAATAGTTGACAACTTTTTAATAGCTTGCTTTATTGCAGAGTTACAGGGATTCAAAAAA TAAGATTTTAAAAATCCGAAAATCTAAATTTTTACAAATTTCCAGGTGGTACTTTGGAAAAATGC GGCGAATCGATGCGGAAAAATGTCTATTGCACACTTTAAATGAGCACGGAGCATTTTTAGTGAGA GATTCCGAAAGTCGACAGCATGATTTATCATTATCAGGTCAGTGAACTTTTAAGGGCGCCCCATA GGGCACATGGCGGGCGAAAACCGGTTTTCTGGGAGAGATAATCAAGGTCGGATACAACAAAATGA GAAAGGCGCGGTGACAGTAAGAGGCAGAAAAGAGGTTATCCCCGCTCGCCCCGACCTTTTATGAT TCCGAAAGTAATGGGAATTTGGGAGAAAGGAGGCAAATTGGGAGA Right flanking sequence: Indices 14332027 -- 14332526 AATTTGGGATGGGGGAATTTAGATGGAAACTGTCAAAAATAGATGGAATATACATAGATGTTTAT TTAATTTTTAAAACTTTTTTTAAAAAATTCGAAAAATCATTTTCGATTTTTTTAAAAAAATTTTA TTGAATTTTTTGCCAATAATTTTCTAATTTTTTAATAAATGTTTTTTGAAAAACTGATAGATTTC ATTTTTTCTGAAAGTATTACAAAAAGTTTTTATCTTTATTTTCAATTTTACAATTCTGAAAAATT ATAAAAAAATATGTATTTCGTGCTTTGTAGTTTGTAGTTTGTAGTTTGTAGTGTGTAGTTTGTAG TTTGTAGTTTGTAGTTTGTAGAAAACCTTTCAAAGCTCTTTTGAGAGTTACCAAAAAACGTTTTT TTGGGAATTTTGAATTTTTCAAATTTATAATATTTCAGTATTTTTTTTTCCTTTGTAACATTCCA AAAACTGTCAAAAAAAAAACAAACTCATCAAATTCCAAGTTTTCT Found at i:14332186 original size:8 final size:8 Alignment explanation
Indices: 14332173--14332192 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 14332163 TTTTTGCCAA 14332173 TAATTTTC 1 TAATTTTC * 14332181 TAATTTTT 1 TAATTTTC 14332189 TAAT 1 TAAT 14332193 AAATGTTTTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65 Consensus pattern (8 bp): TAATTTTC Left flanking sequence: Indices 14331673 -- 14332172 ATTTCCAGGTGGTACTTTGGAAAAATGCGGCGAATCGATGCGGAAAAATGTCTATTGCACACTTT AAATGAGCACGGAGCATTTTTAGTGAGAGATTCCGAAAGTCGACAGCATGATTTATCATTATCAG GTCAGTGAACTTTTAAGGGCGCCCCATAGGGCACATGGCGGGCGAAAACCGGTTTTCTGGGAGAG ATAATCAAGGTCGGATACAACAAAATGAGAAAGGCGCGGTGACAGTAAGAGGCAGAAAAGAGGTT ATCCCCGCTCGCCCCGACCTTTTATGATTCCGAAAGTAATGGGAATTTGGGAGAAAGGAGGCAAA TTGGGAGATTTTGATGGGTTTAGATGGGTAATTTGGGATGGGGGAATTTAGATGGAAACTGTCAA AAATAGATGGAATATACATAGATGTTTATTTAATTTTTAAAACTTTTTTTAAAAAATTCGAAAAA TCATTTTCGATTTTTTTAAAAAAATTTTATTGAATTTTTTGCCAA Right flanking sequence: Indices 14332193 -- 14332692 AAATGTTTTTTGAAAAACTGATAGATTTCATTTTTTCTGAAAGTATTACAAAAAGTTTTTATCTT TATTTTCAATTTTACAATTCTGAAAAATTATAAAAAAATATGTATTTCGTGCTTTGTAGTTTGTA GTTTGTAGTTTGTAGTGTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGAAAACCTTTCAAAGC TCTTTTGAGAGTTACCAAAAAACGTTTTTTTGGGAATTTTGAATTTTTCAAATTTATAATATTTC AGTATTTTTTTTTCCTTTGTAACATTCCAAAAACTGTCAAAAAAAAAACAAACTCATCAAATTCC AAGTTTTCTTAAATTTGAAGATTGTAGTTTGTAGTCCAAAATCCCCCTATTAATCCCAATTTTCT TGCAGTCCGAGAGAACGACAGCGTAAAGCACTACCGTATCCGTCAACTGGACCACGGCGGGTATT TTATCGCCCGGAGGCGCCCGTTTGCCACGTTACACGACCTGATTG Found at i:14332322 original size:7 final size:7 Alignment explanation
Indices: 14332310--14332372 Score: 119 Period size: 7 Copynumber: 9.0 Consensus size: 7 14332300 TATTTCGTGC 14332310 TTTGTAG 1 TTTGTAG 14332317 TTTGTAG 1 TTTGTAG 14332324 TTTGTAG 1 TTTGTAG 14332331 TTTGTAG 1 TTTGTAG * 14332338 TGTGTAG 1 TTTGTAG 14332345 TTTGTAG 1 TTTGTAG 14332352 TTTGTAG 1 TTTGTAG 14332359 TTTGTAG 1 TTTGTAG 14332366 TTTGTAG 1 TTTGTAG 14332373 AAAACCTTTC Statistics Matches: 54, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 7 54 1.00 ACGTcount: A:0.14, C:0.00, G:0.30, T:0.56 Consensus pattern (7 bp): TTTGTAG Left flanking sequence: Indices 14331810 -- 14332309 AACTTTTAAGGGCGCCCCATAGGGCACATGGCGGGCGAAAACCGGTTTTCTGGGAGAGATAATCA AGGTCGGATACAACAAAATGAGAAAGGCGCGGTGACAGTAAGAGGCAGAAAAGAGGTTATCCCCG CTCGCCCCGACCTTTTATGATTCCGAAAGTAATGGGAATTTGGGAGAAAGGAGGCAAATTGGGAG ATTTTGATGGGTTTAGATGGGTAATTTGGGATGGGGGAATTTAGATGGAAACTGTCAAAAATAGA TGGAATATACATAGATGTTTATTTAATTTTTAAAACTTTTTTTAAAAAATTCGAAAAATCATTTT CGATTTTTTTAAAAAAATTTTATTGAATTTTTTGCCAATAATTTTCTAATTTTTTAATAAATGTT TTTTGAAAAACTGATAGATTTCATTTTTTCTGAAAGTATTACAAAAAGTTTTTATCTTTATTTTC AATTTTACAATTCTGAAAAATTATAAAAAAATATGTATTTCGTGC Right flanking sequence: Indices 14332373 -- 14332872 AAAACCTTTCAAAGCTCTTTTGAGAGTTACCAAAAAACGTTTTTTTGGGAATTTTGAATTTTTCA AATTTATAATATTTCAGTATTTTTTTTTCCTTTGTAACATTCCAAAAACTGTCAAAAAAAAAACA AACTCATCAAATTCCAAGTTTTCTTAAATTTGAAGATTGTAGTTTGTAGTCCAAAATCCCCCTAT TAATCCCAATTTTCTTGCAGTCCGAGAGAACGACAGCGTAAAGCACTACCGTATCCGTCAACTGG ACCACGGCGGGTATTTTATCGCCCGGAGGCGCCCGTTTGCCACGTTACACGACCTGATTGCACAT TACCAACGAGAAGCCGATGGTCTTTGTGTGAATCTGGGAGCTCCTTGTGCCAAGTCAGAAGCCCC ACAGACAACGACATTCACATATGGTAAGCTGGAAGTTTTTATGCCTGACAGGTGCCTACATCTGC CTAGATGCCTACTAGATACCTCGGTGCCTACTACATGCCTAGATA Found at i:14332433 original size:7 final size:7 Alignment explanation
Indices: 14332421--14332434 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14332411 GTTTTTTTGG 14332421 GAATTTT 1 GAATTTT 14332428 GAATTTT 1 GAATTTT 14332435 TCAAATTTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): GAATTTT Left flanking sequence: Indices 14331921 -- 14332420 AGAAAAGAGGTTATCCCCGCTCGCCCCGACCTTTTATGATTCCGAAAGTAATGGGAATTTGGGAG AAAGGAGGCAAATTGGGAGATTTTGATGGGTTTAGATGGGTAATTTGGGATGGGGGAATTTAGAT GGAAACTGTCAAAAATAGATGGAATATACATAGATGTTTATTTAATTTTTAAAACTTTTTTTAAA AAATTCGAAAAATCATTTTCGATTTTTTTAAAAAAATTTTATTGAATTTTTTGCCAATAATTTTC TAATTTTTTAATAAATGTTTTTTGAAAAACTGATAGATTTCATTTTTTCTGAAAGTATTACAAAA AGTTTTTATCTTTATTTTCAATTTTACAATTCTGAAAAATTATAAAAAAATATGTATTTCGTGCT TTGTAGTTTGTAGTTTGTAGTTTGTAGTGTGTAGTTTGTAGTTTGTAGTTTGTAGTTTGTAGAAA ACCTTTCAAAGCTCTTTTGAGAGTTACCAAAAAACGTTTTTTTGG Right flanking sequence: Indices 14332435 -- 14332934 TCAAATTTATAATATTTCAGTATTTTTTTTTCCTTTGTAACATTCCAAAAACTGTCAAAAAAAAA ACAAACTCATCAAATTCCAAGTTTTCTTAAATTTGAAGATTGTAGTTTGTAGTCCAAAATCCCCC TATTAATCCCAATTTTCTTGCAGTCCGAGAGAACGACAGCGTAAAGCACTACCGTATCCGTCAAC TGGACCACGGCGGGTATTTTATCGCCCGGAGGCGCCCGTTTGCCACGTTACACGACCTGATTGCA CATTACCAACGAGAAGCCGATGGTCTTTGTGTGAATCTGGGAGCTCCTTGTGCCAAGTCAGAAGC CCCACAGACAACGACATTCACATATGGTAAGCTGGAAGTTTTTATGCCTGACAGGTGCCTACATC TGCCTAGATGCCTACTAGATACCTCGGTGCCTACTACATGCCTAGATACCTTTTTCATGCCTAGA TACCTACGACATGCCTAGATACCTACTACGTGCCTAGATACCTAC Found at i:14332551 original size:7 final size:7 Alignment explanation
Indices: 14332531--14332552 Score: 30 Period size: 7 Copynumber: 3.1 Consensus size: 7 14332521 TTTTCTTAAA * 14332531 TTTGAAG 1 TTTGTAG * 14332538 ATTGTAG 1 TTTGTAG 14332545 TTTGTAG 1 TTTGTAG 14332552 T 1 T 14332553 CCAAAATCCC Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50 Consensus pattern (7 bp): TTTGTAG Left flanking sequence: Indices 14332031 -- 14332530 TGGGATGGGGGAATTTAGATGGAAACTGTCAAAAATAGATGGAATATACATAGATGTTTATTTAA TTTTTAAAACTTTTTTTAAAAAATTCGAAAAATCATTTTCGATTTTTTTAAAAAAATTTTATTGA ATTTTTTGCCAATAATTTTCTAATTTTTTAATAAATGTTTTTTGAAAAACTGATAGATTTCATTT TTTCTGAAAGTATTACAAAAAGTTTTTATCTTTATTTTCAATTTTACAATTCTGAAAAATTATAA AAAAATATGTATTTCGTGCTTTGTAGTTTGTAGTTTGTAGTTTGTAGTGTGTAGTTTGTAGTTTG TAGTTTGTAGTTTGTAGAAAACCTTTCAAAGCTCTTTTGAGAGTTACCAAAAAACGTTTTTTTGG GAATTTTGAATTTTTCAAATTTATAATATTTCAGTATTTTTTTTTCCTTTGTAACATTCCAAAAA CTGTCAAAAAAAAAACAAACTCATCAAATTCCAAGTTTTCTTAAA Right flanking sequence: Indices 14332553 -- 14333052 CCAAAATCCCCCTATTAATCCCAATTTTCTTGCAGTCCGAGAGAACGACAGCGTAAAGCACTACC GTATCCGTCAACTGGACCACGGCGGGTATTTTATCGCCCGGAGGCGCCCGTTTGCCACGTTACAC GACCTGATTGCACATTACCAACGAGAAGCCGATGGTCTTTGTGTGAATCTGGGAGCTCCTTGTGC CAAGTCAGAAGCCCCACAGACAACGACATTCACATATGGTAAGCTGGAAGTTTTTATGCCTGACA GGTGCCTACATCTGCCTAGATGCCTACTAGATACCTCGGTGCCTACTACATGCCTAGATACCTTT TTCATGCCTAGATACCTACGACATGCCTAGATACCTACTACGTGCCTAGATACCTACTACATACC TAGGTAACTGCTTGATGTCTAGATGCCTACTACATGTTTAGATACCAACTATATACCTAGGTAAC TTATTGATGTCTAGATGCCTACCAAATGCCTTGATGCCTACTACG Found at i:14335001 original size:7 final size:7 Alignment explanation
Indices: 14334989--14335005 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 14334979 AAAGTGTGTG 14334989 TTTGAAC 1 TTTGAAC 14334996 TTTGAAC 1 TTTGAAC 14335003 TTT 1 TTT 14335006 TTACCTAACC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53 Consensus pattern (7 bp): TTTGAAC Left flanking sequence: Indices 14334489 -- 14334988 AGAAACCTCTCAGCCTATGGACTAAAAAACTTCAGGCTTTTATTTTTCCGTGTTTTTCTTAATCC AGGGGCTTTTAGTGTAGATCCTAAAACAACCGGATAAAACGGTTTCCCCTTTTTCTATTGACTTT TCCATCTCCTGATCCGAGCAGCTACAGCCGCCAATATTGAAACAGATAGGACCGGTTTGAAACAT GATATCACTCCCCTACAAACATCAGTTCCGCTAGGAGATCTCATAAAACGAAGGGATCTGGAACA TAGAGATTTACCACTAGGGTTATAAGGAAATGTCGATGCACCATGAGTAAAAACTCAACCTCGAA TATAGATAGCAAGGCCCTAAAATGAATGACAAATGTTCTCATTAGAGCGCACTTAAATTTGCAAG CATGAACGAAAATATGAGTTTTGTAAGAAATTTAATCTATGAAGCTTCAAAACCATGCGAAAAAT GGCTAAACATACGAAAATTCTTACTACAGCTTACTAAAGTGTGTG Right flanking sequence: Indices 14335006 -- 14335505 TTACCTAACCCCGCCCCCCCCCCCCTTATGCTTGCATGTTTAAGTGCGCTCTAGTGAGAACATTT GTCATTTTTTAATTAGAGCGCACTTGCAAATCAGCTTGCAGATCCTGGATGTACTACATAAACCA TCAATTTCCAGGTATGGGAAGGCCGATGGAATGTGAACGTCCCCGTCGCTGTGAAAAAGCTAAAG GCCGGAACCGCAGATCCTACGGATTTCCTAGCCGAGGCACAGATTATGAAGAAGCTCCGGCATCC GAAGCTTCTGTCCCTGTATGCAGTCTGCACACGTGATGAGCCGATTCTTATAGTCACCGAGCTAA TGCAGGAGAATCTGCTCACATTCTTACAGCGACGAGGTCGGCAGTGTCAGATGCCTCAGCTGGTG GAGATCTCGGCGCAGGTGAGGTTCACGTTCGGATTCCTCGAAATTAAAAAAAAATTTCAAAAAAA GTTTTGCAGGTTGCCGCTGGAATGGCCTACCTAGAGGAGATGAAT Found at i:14336589 original size:10 final size:9 Alignment explanation
Indices: 14336570--14336590 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 14336560 TGCCCGCAAT 14336570 TCTAGTAGA 1 TCTAGTAGA 14336579 TCTACGTAGA 1 TCTA-GTAGA 14336589 TC 1 TC 14336591 AAACCGAAAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 4 0.36 10 7 0.64 ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33 Consensus pattern (9 bp): TCTAGTAGA Left flanking sequence: Indices 14336070 -- 14336569 GCTAATTATAAAAATTAAGTCCCTTATTGAAGGGGCCTTGAAAATTTCGCAAAACTTTGGGAATA GGTCGCGTCAACTAAAATGTGGAATATTCCTGCGCCCTTCGCCGTTTGATCTCCGGGAATCGCGG AAAATTCAAATTTTGAAAAATGCGATGTAGCCTAAGTTTTACTGTAGAACGTGGTGTCAGAGTGT CCCATTTCGGTTTGATCTACGTAGATCTACAAAAAATGCGCGGAGTTGAGACGCAGAGTTCTAAA GTGATTTTTAGAACGAAAAACTCCCGCATTTTTTGTTGATCAAACCGTGTAGTACCCCAGAAACA CGCCACACATTTCAAAAAAGAAATTTCCCGCCATTTCCGGAGGTCACACGAGCACATGGTGTCAG GCTGTCCCATTGCGGTTTGATCTACAAAAAAATGCGGTAATTTTTCCCTTAAAAGAATGTGACTT CAGCACGTTTATCAGTTGAAAAGTCTGCGTCTAAATGCCCGCAAT Right flanking sequence: Indices 14336591 -- 14337090 AAACCGAAATGGGGCAGCCTGACACCACGTCTAGGTTACTAAACTGGTCCTTTACGAACCATTTG GGAATATGAAATGGCAAATTTAAAGCGAAAATCCCCCCGCAATTTATGTAGATCACACTACAATG ACACCTCTTTACCATTTCCAGGTATGACAAACGCCGAAGTCCTACAACAAGTCGACGCCGGGTAC CGTATGCCGTGCCCAGCCGGGTGCCCAGTCACCCTTTACGACATAATGCAACAGTGCTGGAGAAG CGACCCGGACAAACGGCCAACCTTTGAGACCCTCCAATGGAAGTTGGAGGATCTGTTCAATCTGG ACTCTTCCGAGTATAAGGAGGCCAGCATAAATTTCTGAGAGAGAGAGAGAAACTTTTGGGTGCCT ATATACAGCAGCTACGGGTTTTTTTTGTGATTTTTTCTGTCTGTGTGTGTTCTTTTTTGCTCAAT ACTGTTTTTTTTTTAATAAATTATTGATTTTTCTTATGATCCAGG Found at i:14337287 original size:9 final size:10 Alignment explanation
Indices: 14337266--14337290 Score: 36 Period size: 10 Copynumber: 2.5 Consensus size: 10 14337256 ATTTTATTAT 14337266 TTTTTAGCAA 1 TTTTTAGCAA * * 14337276 TTTTTCGCAT 1 TTTTTAGCAA 14337286 TTTTT 1 TTTTT 14337291 GGTGCTTTCT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.16, C:0.12, G:0.08, T:0.64 Consensus pattern (10 bp): TTTTTAGCAA Left flanking sequence: Indices 14336766 -- 14337265 AACAAGTCGACGCCGGGTACCGTATGCCGTGCCCAGCCGGGTGCCCAGTCACCCTTTACGACATA ATGCAACAGTGCTGGAGAAGCGACCCGGACAAACGGCCAACCTTTGAGACCCTCCAATGGAAGTT GGAGGATCTGTTCAATCTGGACTCTTCCGAGTATAAGGAGGCCAGCATAAATTTCTGAGAGAGAG AGAGAAACTTTTGGGTGCCTATATACAGCAGCTACGGGTTTTTTTTGTGATTTTTTCTGTCTGTG TGTGTTCTTTTTTGCTCAATACTGTTTTTTTTTTAATAAATTATTGATTTTTCTTATGATCCAGG CTTAAGATCCAGGTAAGAGTAACCTGATCACATTTCAAACATTTCTTTATGATCGGCAAATATTA AGAGGGATATCGAGGAGAGGAGGGGGGTCTAGGTAAAAAGTTCAAATTCACACACACACACACAA ACAGTGGAAGTGGCTTTAGTTCAAAAGCTTGAAGAATTTTATTAT Right flanking sequence: Indices 14337291 -- 14337790 GGTGCTTTCTTGAGTCCAATTTTCAATTTTTCGGCTTTTTAACTTTTCTAACAAAAACTCGATAT TTTATACTTTATTGCAAATGCGCTCCAACGAAAAAGTGATCAATGAGCGTTAGGATTTTCCATTC CAAAAATTGTGATTATCAAGCGCACGTGGTGCCAGGTTGTCCCATTACGGTTTGATCTACAAAAA ATGCGGGAATTTTTTGCCCGATGAAATGTGACGTCAGCATGTTCTGAACCATGCGAAATCAGTCC CGCACACTCCCGCATTTTTTGAAGATCAACGTAGATCAATCCGAAATGAGACTCTCTTACACCAC GTGTAAGCGCATTACATTGAGAAAATTTGAGGACCACATTTCCAAAGCGAGATATTCAAATTTTC CAATTATTAAAAGTACGCTCCATTGAGAAATTGTAGGAAACTTTTATTTTTGTCATTAGAGCGTG TTTAGATGTTGTTGTCGGATTAAGGTATAAGTTGCAAATGAGCTC Found at i:14337319 original size:7 final size:7 Alignment explanation
Indices: 14337307--14337320 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14337297 TTCTTGAGTC 14337307 CAATTTT 1 CAATTTT 14337314 CAATTTT 1 CAATTTT 14337321 TCGGCTTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (7 bp): CAATTTT Left flanking sequence: Indices 14336807 -- 14337306 TGCCCAGTCACCCTTTACGACATAATGCAACAGTGCTGGAGAAGCGACCCGGACAAACGGCCAAC CTTTGAGACCCTCCAATGGAAGTTGGAGGATCTGTTCAATCTGGACTCTTCCGAGTATAAGGAGG CCAGCATAAATTTCTGAGAGAGAGAGAGAAACTTTTGGGTGCCTATATACAGCAGCTACGGGTTT TTTTTGTGATTTTTTCTGTCTGTGTGTGTTCTTTTTTGCTCAATACTGTTTTTTTTTTAATAAAT TATTGATTTTTCTTATGATCCAGGCTTAAGATCCAGGTAAGAGTAACCTGATCACATTTCAAACA TTTCTTTATGATCGGCAAATATTAAGAGGGATATCGAGGAGAGGAGGGGGGTCTAGGTAAAAAGT TCAAATTCACACACACACACACAAACAGTGGAAGTGGCTTTAGTTCAAAAGCTTGAAGAATTTTA TTATTTTTTAGCAATTTTTCGCATTTTTTGGTGCTTTCTTGAGTC Right flanking sequence: Indices 14337321 -- 14337820 TCGGCTTTTTAACTTTTCTAACAAAAACTCGATATTTTATACTTTATTGCAAATGCGCTCCAACG AAAAAGTGATCAATGAGCGTTAGGATTTTCCATTCCAAAAATTGTGATTATCAAGCGCACGTGGT GCCAGGTTGTCCCATTACGGTTTGATCTACAAAAAATGCGGGAATTTTTTGCCCGATGAAATGTG ACGTCAGCATGTTCTGAACCATGCGAAATCAGTCCCGCACACTCCCGCATTTTTTGAAGATCAAC GTAGATCAATCCGAAATGAGACTCTCTTACACCACGTGTAAGCGCATTACATTGAGAAAATTTGA GGACCACATTTCCAAAGCGAGATATTCAAATTTTCCAATTATTAAAAGTACGCTCCATTGAGAAA TTGTAGGAAACTTTTATTTTTGTCATTAGAGCGTGTTTAGATGTTGTTGTCGGATTAAGGTATAA GTTGCAAATGAGCTCTAATGAGAAAATCTTGAAAACTGAATGTTT Found at i:14337336 original size:8 final size:9 Alignment explanation
Indices: 14337325--14337342 Score: 29 Period size: 8 Copynumber: 2.1 Consensus size: 9 14337315 AATTTTTCGG 14337325 CTTTT-TAA 1 CTTTTCTAA 14337333 CTTTTCTAA 1 CTTTTCTAA 14337342 C 1 C 14337343 AAAAACTCGA Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 8 5 0.56 9 4 0.44 ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56 Consensus pattern (9 bp): CTTTTCTAA Left flanking sequence: Indices 14336825 -- 14337324 GACATAATGCAACAGTGCTGGAGAAGCGACCCGGACAAACGGCCAACCTTTGAGACCCTCCAATG GAAGTTGGAGGATCTGTTCAATCTGGACTCTTCCGAGTATAAGGAGGCCAGCATAAATTTCTGAG AGAGAGAGAGAAACTTTTGGGTGCCTATATACAGCAGCTACGGGTTTTTTTTGTGATTTTTTCTG TCTGTGTGTGTTCTTTTTTGCTCAATACTGTTTTTTTTTTAATAAATTATTGATTTTTCTTATGA TCCAGGCTTAAGATCCAGGTAAGAGTAACCTGATCACATTTCAAACATTTCTTTATGATCGGCAA ATATTAAGAGGGATATCGAGGAGAGGAGGGGGGTCTAGGTAAAAAGTTCAAATTCACACACACAC ACACAAACAGTGGAAGTGGCTTTAGTTCAAAAGCTTGAAGAATTTTATTATTTTTTAGCAATTTT TCGCATTTTTTGGTGCTTTCTTGAGTCCAATTTTCAATTTTTCGG Right flanking sequence: Indices 14337343 -- 14337842 AAAAACTCGATATTTTATACTTTATTGCAAATGCGCTCCAACGAAAAAGTGATCAATGAGCGTTA GGATTTTCCATTCCAAAAATTGTGATTATCAAGCGCACGTGGTGCCAGGTTGTCCCATTACGGTT TGATCTACAAAAAATGCGGGAATTTTTTGCCCGATGAAATGTGACGTCAGCATGTTCTGAACCAT GCGAAATCAGTCCCGCACACTCCCGCATTTTTTGAAGATCAACGTAGATCAATCCGAAATGAGAC TCTCTTACACCACGTGTAAGCGCATTACATTGAGAAAATTTGAGGACCACATTTCCAAAGCGAGA TATTCAAATTTTCCAATTATTAAAAGTACGCTCCATTGAGAAATTGTAGGAAACTTTTATTTTTG TCATTAGAGCGTGTTTAGATGTTGTTGTCGGATTAAGGTATAAGTTGCAAATGAGCTCTAATGAG AAAATCTTGAAAACTGAATGTTTTCACATTAGAGCGCATTTGCAT Found at i:14338798 original size:8 final size:8 Alignment explanation
Indices: 14338785--14338800 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14338775 TAGTACTACT 14338785 TCCCCCCG 1 TCCCCCCG 14338793 TCCCCCCG 1 TCCCCCCG 14338801 CCGTACTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.75, G:0.12, T:0.12 Consensus pattern (8 bp): TCCCCCCG Left flanking sequence: Indices 14338285 -- 14338784 CGCTCTGATGGAAAAATTCTAGTTTCGATTTTATGCATCAGAGCGTACTTGAAAAATACAATTTT CGAGTATCAGCAGATTTTGGCAACCGGTCTGAAAAAATGACTGATAATGAACCTAAACCAGAGCC TGAGCCTATGCCTAAGCCAAAGCCTAAGCCTAAGACTAAGCCTAAGTCTAAGCATAAGACTAAGC CTGAGCCTAAGTCTAAGCCTGGGCCTAAACTTCAACTTAAGCCTAAGCCTAAGACTTGTTTTAAG CCTACGCCTAAGCCTAAACCTAAGACTGAGCCTAAGCCAAAGCCTGAGCCTGAGCATACTCCTAA ACTTAAGCCTAAACCTAAATCTAGGCCTAAGCCTAGACCTAAACTTAAGCCTAGGCCTAATTTAA TGCCTAAGCCTAAGCCCAAGCCTAATCCTAAGCCTAGGCCTAATAGGCTCGCAAAAATTTCAAAT TTTAAGAAAAAGTTGCGAAACATGTCCAATGTATGTAGTACTACT Right flanking sequence: Indices 14338801 -- 14339300 CCGTACTTTTTCCCTTTGCCTGTCTATTTAACAACAGAATTAAAAAAGTTCTTCTTCTTCTTCTT CTTCTTCTTCTTGTCTGTGTGTATTTCTTTTGCCCACTGCTGCTGCGCTCACTAATTACGCAAAG GGGCTCAAACACGCAAAAAATCAGTGCTTTACCCCAAAAAATGTTTTTTGTGTGTATTGTTGAAT TTCGAAAAATGTTTATATTTTTATTTTGCCCCCCCCCCCCCCCCCAATGTTTTTGTTTATAATTT TGTTCAATTTTCTAGTAACTAATTCACCCCCTTGCTACTTAGAGTCCTAGAAAAAACTGAAAAAT TCCAGAATTTATGTACGAAAACTGATTAAATGCAAGGATCACCACCGCCACCTCCACCTCCGCAG CCTACGTCGAAAATGCTATATGAAGAGGGAGAGACTCACGATGGGCTTAGTAAGTGCCTTTTTTC AAGTAAGCTTTGATTTTTTGGGGGGTTTTAGGGTTTAAAATAAGG Found at i:14341600 original size:7 final size:7 Alignment explanation
Indices: 14341588--14341601 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14341578 TATAAGGTGG 14341588 GAAATTT 1 GAAATTT 14341595 GAAATTT 1 GAAATTT 14341602 TCATTGTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): GAAATTT Left flanking sequence: Indices 14341088 -- 14341587 ACACAAAGCTGTTGATATTGAACGCTGAGAATTTGGAGATGAAGAGTTTTGATATTACGAAAAAG GGCGCCAAGGTGAAGGCGGATTTTGTGAGTTTTTTCAGTGGAAACTTTTTGGAAAATTACTTGGG TTTCAGGTAAAATGCGCGGTGATGACTCAGTGGGCCTGGAAGCTTGCAAAACGACTGCATAAAGG AGATCATATCGTTCTAACAATTTATTATAGTGCGCAGGTGACGGAATATAGAGCTTAGCGGCTCA ATTTCAATAATTCCATTTTCAGATGAAATCCGATCTTCAAGGGCTATACTTCAGCACACATCTTG GAACGGACGGGAAGAAAACGTAATGCAAGCGCGCTCTAACGCACAGAGACCAGAAAACTTGTATT TCAGAAAATCAGCAGCAACACAGTTTGAGCCAACATTCGCCAGAAAGATGTTGCCATGTTTCGAC GAGCCTAATTTTAAGGCAACATTCCAAGTGGCTATTATAAGGTGG Right flanking sequence: Indices 14341602 -- 14342101 TCATTGTTTTTTACCCTAGCAACAGCTAAATTGCTGTGGCAGACCAGAAAAATCAGAAATTTGAA ATTCTAAATTCTCTGCTATTTGGCGCTACATAGTCAATTTTGACTATGAGAGTGCCTAAACAAAG GAGTTTGATCTACAAAAAATGCGGGAGTTGAGACGCAGATTTCTCAATTAATTTTGCATGGTTAA GAACGTGCTGACGTCACAGTTTTTTGAACAAAAAATTCCCGCATTTTCTGTAGATCAAGCCGTAA TGGGATAGCCACCGCGTGGAAAACTATTTGAAACGCGCACATGGTGCATCGACCTTCCTTAACTG TTACACTCAAAATAAAAAAAAAACTGCGTGGCGTGTTATGCAGAAAACCTAATATTTAGGCCCCG TCTTTTTCTCGTCCACTTACGGAGAAAAGGACAAAAATTTTGATCCCAACTAATATCAGGCCGCC GACTTCTCACGGGTTCCGCGCGCCGCTATGTTTAACTCGCAGCAG Found at i:14341675 original size:7 final size:7 Alignment explanation
Indices: 14341665--14341678 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14341655 CAGAAATTTG 14341665 AAATTCT 1 AAATTCT 14341672 AAATTCT 1 AAATTCT 14341679 CTGCTATTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): AAATTCT Left flanking sequence: Indices 14341165 -- 14341664 AAGGCGGATTTTGTGAGTTTTTTCAGTGGAAACTTTTTGGAAAATTACTTGGGTTTCAGGTAAAA TGCGCGGTGATGACTCAGTGGGCCTGGAAGCTTGCAAAACGACTGCATAAAGGAGATCATATCGT TCTAACAATTTATTATAGTGCGCAGGTGACGGAATATAGAGCTTAGCGGCTCAATTTCAATAATT CCATTTTCAGATGAAATCCGATCTTCAAGGGCTATACTTCAGCACACATCTTGGAACGGACGGGA AGAAAACGTAATGCAAGCGCGCTCTAACGCACAGAGACCAGAAAACTTGTATTTCAGAAAATCAG CAGCAACACAGTTTGAGCCAACATTCGCCAGAAAGATGTTGCCATGTTTCGACGAGCCTAATTTT AAGGCAACATTCCAAGTGGCTATTATAAGGTGGGAAATTTGAAATTTTCATTGTTTTTTACCCTA GCAACAGCTAAATTGCTGTGGCAGACCAGAAAAATCAGAAATTTG Right flanking sequence: Indices 14341679 -- 14342178 CTGCTATTTGGCGCTACATAGTCAATTTTGACTATGAGAGTGCCTAAACAAAGGAGTTTGATCTA CAAAAAATGCGGGAGTTGAGACGCAGATTTCTCAATTAATTTTGCATGGTTAAGAACGTGCTGAC GTCACAGTTTTTTGAACAAAAAATTCCCGCATTTTCTGTAGATCAAGCCGTAATGGGATAGCCAC CGCGTGGAAAACTATTTGAAACGCGCACATGGTGCATCGACCTTCCTTAACTGTTACACTCAAAA TAAAAAAAAAACTGCGTGGCGTGTTATGCAGAAAACCTAATATTTAGGCCCCGTCTTTTTCTCGT CCACTTACGGAGAAAAGGACAAAAATTTTGATCCCAACTAATATCAGGCCGCCGACTTCTCACGG GTTCCGCGCGCCGCTATGTTTAACTCGCAGCAGGCGGAGACAGCTCGCCACGCCCACAGCGAGTT AAACGCAGCGGCGCGCGGAACCCGTGAGATGTCGGCGGCCTGATA Found at i:14342358 original size:10 final size:10 Alignment explanation
Indices: 14342337--14342358 Score: 30 Period size: 10 Copynumber: 2.2 Consensus size: 10 14342327 CCGTTTAGCA ** 14342337 TTACAGGGTC 1 TTACAGCATC 14342347 TTACAGCATC 1 TTACAGCATC 14342357 TT 1 TT 14342359 TCGCAGAGCC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36 Consensus pattern (10 bp): TTACAGCATC Left flanking sequence: Indices 14341837 -- 14342336 GCATTTTCTGTAGATCAAGCCGTAATGGGATAGCCACCGCGTGGAAAACTATTTGAAACGCGCAC ATGGTGCATCGACCTTCCTTAACTGTTACACTCAAAATAAAAAAAAAACTGCGTGGCGTGTTATG CAGAAAACCTAATATTTAGGCCCCGTCTTTTTCTCGTCCACTTACGGAGAAAAGGACAAAAATTT TGATCCCAACTAATATCAGGCCGCCGACTTCTCACGGGTTCCGCGCGCCGCTATGTTTAACTCGC AGCAGGCGGAGACAGCTCGCCACGCCCACAGCGAGTTAAACGCAGCGGCGCGCGGAACCCGTGAG ATGTCGGCGGCCTGATATTGGTTGGGGTCAAAATTTTTGCCTTTTCTCCGTGAGCGGACGAGAAA AAGACGGGGCCTAAATATTAGGTTTTCTGCAGTACACGCCACGCAGTTTCTTTATTTTGAGTGTA TAGCAAGCATTTTTTTCACAGAGTCTTTACATAAACCGTTTAGCA Right flanking sequence: Indices 14342359 -- 14342858 TCGCAGAGCCCAGTGATCCTGGAACTTAAAATTTGCATAAACTAACACCTGTAACATTTATCACG TTTTCCAGAAACCCCCACCACATCGCAAGAAGCAACATGAACATCCTCATATCGAAGGAGTACAA AAACGGACTTATCAAGGATGTATTCGAGAAGTCTGTAAAAATGTCAACGTACCTATTAGCCGTGG CAGTTTTGGATGGCTATGGATACATCAAGAGGCTGACCAGAAATACGCAGAAAGCTATTGAAGTA CGGCTTTATGCTCCTCAGGATATGCTCACCGGGCAGTCGGAGTTCGGGCTGGACACTACGATTCG CGCGCTGGAGTTTTTTGAAGACTATTTTAATATCAGTTATCCATTGGACAAAATTGGTGAGTAAG GTAGATCAAATACCTTAAATAGAGCATTCTTTTATACCTTTCCTCTCAGAGTCAAACCCTATTAG ACTTACTCGGACTAAAAAAACAGAACTGCAAAAAAAAACAGAGTA Found at i:14344308 original size:8 final size:7 Alignment explanation
Indices: 14344295--14344313 Score: 29 Period size: 8 Copynumber: 2.6 Consensus size: 7 14344285 GATTAGTTAT 14344295 AGGTAGG 1 AGGTAGG 14344302 CAGGTAGG 1 -AGGTAGG 14344310 AGGT 1 AGGT 14344314 GATTGCTGAA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 4 0.36 8 7 0.64 ACGTcount: A:0.26, C:0.05, G:0.53, T:0.16 Consensus pattern (7 bp): AGGTAGG Left flanking sequence: Indices 14343795 -- 14344294 ATTCTACGCGGAAAACCTGGCATTCAGCCAGGAACCCGATGGATTCTTGAGCTCCCGAGCCATCG AGTCGGATGATGATGATAGTTTGTTGAACCTCTTCGATGCAATCAACTATCACAAGGCAGCGGCG ATAATTCACATGATTGCTGAGATGGCTGGTCAGAAGAACTTTCAGAATGCATTGGTCGAATATTT GAACAAGTATGCCTATAGTAATGCGATTGGAGTGGATCTATGGAAGATCGTAGAGAAGGTAGTTG AGATTCGGACGGTCTTGGAAATCCATACCTAGCTCCTTTCAGCACGCCAACCTCCAAGGCACCGT GTCAATCCCAGATCTCGCAAAGGCCTACACCACCCAAGTCGGATATCCCCTGCTTACTGTAGAAA GGACGGATGAGGGGGTTCTGGTGCATAATCAGACACGATTCTTGTTTGCAGAGGGTGATAAGGCA GAGGAGAAGCGTGGGGATTGGAAATGGCCAATTCCGATTAGTTAT Right flanking sequence: Indices 14344314 -- 14344813 GATTGCTGAAGCGTCGGGTTTTACAGAGATTCCGAGCACCGACGGAAGAAGCAGCACTGGATTCA AGCGGATGATAAGAATGGTATGCGGTATCTGAATAGTTATAGGTAGTCTTGAGTAGTTCTAGGTA ATCCTGGGTAGTTCTAGGTAGTACTGAGTAGTTCTAGGTAGTCCTGAGTAGTTCTAGGTAGTCCT GAGTAGTTCCAGGTAGTCCTGAGTAGTTCCACGTAGTTCTATGTAGCCCGTAGTCTTGTGTAGTT CCAGGTAATCCTGAGTAGTTCTTGGTAGTCTTATCCAGAATTACAGTTCCAGGTAGACCTGCGTA GTTCTGAGTTGTTCTTGGTAGTCTTATCCAGAACTCCTCAGGACTACCTGGAACTACTCAAAACT AATAACTACTTAGAACTACTTAGAACTACGCAGGTCTACCTACAGCTATTCGGGACTACCTAAAA CTGCCCAAGACTAAAGACTACCTACAGTGCATTTTCTTTCCACTT Found at i:14344787 original size:7 final size:7 Alignment explanation
Indices: 14344775--14344788 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14344765 AAAACTGCCC 14344775 AAGACTA 1 AAGACTA 14344782 AAGACTA 1 AAGACTA 14344789 CCTACAGTGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14 Consensus pattern (7 bp): AAGACTA Left flanking sequence: Indices 14344275 -- 14344774 GGCCAATTCCGATTAGTTATAGGTAGGCAGGTAGGAGGTGATTGCTGAAGCGTCGGGTTTTACAG AGATTCCGAGCACCGACGGAAGAAGCAGCACTGGATTCAAGCGGATGATAAGAATGGTATGCGGT ATCTGAATAGTTATAGGTAGTCTTGAGTAGTTCTAGGTAATCCTGGGTAGTTCTAGGTAGTACTG AGTAGTTCTAGGTAGTCCTGAGTAGTTCTAGGTAGTCCTGAGTAGTTCCAGGTAGTCCTGAGTAG TTCCACGTAGTTCTATGTAGCCCGTAGTCTTGTGTAGTTCCAGGTAATCCTGAGTAGTTCTTGGT AGTCTTATCCAGAATTACAGTTCCAGGTAGACCTGCGTAGTTCTGAGTTGTTCTTGGTAGTCTTA TCCAGAACTCCTCAGGACTACCTGGAACTACTCAAAACTAATAACTACTTAGAACTACTTAGAAC TACGCAGGTCTACCTACAGCTATTCGGGACTACCTAAAACTGCCC Right flanking sequence: Indices 14344789 -- 14345288 CCTACAGTGCATTTTCTTTCCACTTCTACGGGTTCAAAAGGGGTGCATTATGATCTCGACACGCG CCACTCATTGGTCTCGCCACGCGCCTCAAAAACCAATGGGTGGCGCGTGTCGAGACCATCGCGCG TAAATGCGCGCCCCTTTAAACTCGTAGAAGTGGGAAGAAAACGCACTGTAGGTAGTCTTTAGTTC TGGGTAGTTTTAGGTAGTCCCGAGTAGCTGTAGGTAGCCCTGAGTAGTTCTTGGTAGTCCCGAGG ATTTCCAGGTAGACCTGCTCTGTTCCAAGTAGTTCTTAGTCTTGAGTAGTTCCAGGTAGTCCTGA GTAGTTCTGGATAAGTTTGGCTGATTTGGGGTAGTTGTAACCTAAAAATCCAAATTGATTCCAGT TACCTGGGAGACCACCTCCAACGACTGGCTGATCCTTAACACAGGTGGTGTTGGATACTTCAAAG TTCTATACGACCCGGAGACCTATCGAAAGCTTGTGAAACAGCTGC Found at i:14345936 original size:7 final size:7 Alignment explanation
Indices: 14345924--14345937 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14345914 GTGCCCTAGA 14345924 GTAATGT 1 GTAATGT 14345931 GTAATGT 1 GTAATGT 14345938 AAAGAGTAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43 Consensus pattern (7 bp): GTAATGT Left flanking sequence: Indices 14345424 -- 14345923 ATTAGTGTATACTTTGACCTGCTAGAATACGTAGAGAGTAAGCTAAACTTGGAAAAAACTCTAAA ATTTGTTGAAAATTTTCCAGAAGAAACAGATAAAATGACATGGTCAATTGTTGGCAAACAATTGC GAACCATTGAGGCGTTAATCGAGGAGTCGGACTATTTGGACATATACCAAGATTTTCAACGAAGC CTGATTATGAGGCTGTATGAGAGCCTGGATTGGGATGAGCAGGGAGCAAATCCTAATCAGAAACG ACTTCAGGTAAGGTTTTGAGGGCCATTGTAGGCAGGCTCGGTTTCAGGGCCTGGCGCCTGCCTGA AACTTATCAGCCTTTCGCCTCTTTTTGAAATTTTTACGTGAATTTACAATTTTCTCCCTATTTGA TGGAAATCAAAAATAAAATGTCTGGTTCGTTTTAGCGCGAATTGAGGCGAGAGGCAGGTGGAGGC CAAGCAGACAGGCAGGCGTTTTAACGCCTACTCGGGTGCCCTAGA Right flanking sequence: Indices 14345938 -- 14346437 AAAGAGTAACCACAGAAGTGGTTTACGTTGTCCACTTGGTGTCAGGCTGTCCCATAGCGGTTTGA TCTACAAAAAGTGCGGGATTAATTCCGCGCAAGATCAGTTGAGAAGTTTGCGTCTAAATTCCCGC GATTTTTGTAGATCTAAGTAGATCAAACTGAAATGGGGCAAATGGAAGTGATTGTCCCATGCTAT TTGGGGAAACAGTTTCTGAAGCCGTGCCAAATAGAGTTTTAACTAAATTTGGCAAAATTTGGAAA TTTATCAGTACTCTGTTTAATAGAAAAAGCACCGAAATTGCAAAATTTCTGAATTTGAGCAAAAT TTGTTGTCAATTCAGGTTCTGGTGTACCAGGTAAACATTCATTTGCGGCATAAAAAACGTGGTAT TGTAGATCAGCGGGGTCTTGTAGATCAACGGGGTCTTGTAGATTAACGGGGTCTTGTAGATCAAC GGGGTATTGTAGATCAACGGGGTCTTATAGATCAACGGGGTATCG Found at i:14347412 original size:7 final size:7 Alignment explanation
Indices: 14347397--14347412 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 14347387 TTAATTTGGT 14347397 ATAAAAA 1 ATAAAAA * 14347404 ATAAGAA 1 ATAAAAA 14347411 AT 1 AT 14347413 TTCCAGACTC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19 Consensus pattern (7 bp): ATAAAAA Left flanking sequence: Indices 14346897 -- 14347396 CCTACCCCAACATCTCAATTCCCTTCAGGTGGACATTTTTGCGGTCGCTTGCCGCCTTCAAATCA AAGACTGCACGAAACAAGCCTACCAACGATATTTACAATGGGTTAGCAGTGGAGTCCGAAACCCC GAGCATCATATGATAGCCCTTATGGAGGGTGTGAAGCAGGGTGAAACAACGGCCTGGGAGCGGAT ATGGAAGGCTTATAAGACTGCAACAAGCCCATCGGAGAAGAATAATATTATTGGGGCATTGACGA GTACCAAGGATGCTTCACTGATTAACAGGTATTTGGTATATTCAGCAGCTAGTGATCCATAGTTC AAGGAACTTTCAGACTCCTCAAGTACTGCCTGGACGGGAAGATCAAGGCGAACCTGATTCCACGT GTGTTCTCCTACTTCTCACTAAACCAGTCTACAAGGAACATTGTCTGGAAATTTTTCAAAACGCA TTTTGAACAGTTTCATGGAATGTTAGTTTGGAAAGTTAATTTGGT Right flanking sequence: Indices 14347413 -- 14347912 TTCCAGACTCGGGAAGGGATCGTTGATGGCCAGTTGTGTGAAGTGTCTCGCCGAGCCATTGAGCA CTGAAACCGAGTTGGAGGAGGTGAAGGAGTTCCTGAAGAGTCAGAAGGTAAGGATATCATATTTT GAGGCAAACATTTACTCGTGATCTGAAGTTTGCTAGCCCAGCGTTCTGAAGCTCTGATAGATCCT AGCCGAGTCATTTTTTGCTTACCTACCCCCCTACCATTTTCCAGTTCGCCGAAGACGGTCTCATC AAAATGGAGATGACTTACGAGCAAATCGAGCTGAACATCCAATGGCGAAAACTCAATGAAGGCCA GCTGGGCAAGTGGATCAGCAGATGGGATGAGCGTAGACGGACACTGTACAGACGGAAGAGGCATC GCCATCACCATAAACCTTTGTCCGTATTTTGATCTACCGGATATATCTCTTATTTTCCATTCGTT GAAGGTGCTTTGTAAAGATTTTCAGTTGGTTTTTTGATTTTTTGG Found at