TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11912825 original size:7 final size:7 Alignment explanation
Indices: 11912810--11912826 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11912800 TAGCTTAAAA 11912810 TTTTGGT 1 TTTTGGT * 11912817 TTTTTGT 1 TTTTGGT 11912824 TTT 1 TTT 11912827 ATTTTCATCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82 Consensus pattern (7 bp): TTTTGGT Left flanking sequence: Indices 11912310 -- 11912809 AACGAGAACTAACTTCCTATTTTAATAAAGAAATGATAGAGCAATATGAGCGACTTGCTCTCCAC AAGACACCGCTTCACCATTGGTTCCTTGCTACACAACGCGGAGAACATTGCAGAAACTCCGTGGA GCAACGCCCCGGCGTCATCATTTTGCTGCTGCTCTCCGGCAGTGGAGACCTCGTCATCATACATC GTCGCTTGGCGGATTTCTCGCCCAGCCATGTAGAATCGATAGGCAGTATCAGCAAATTGTCCGAG AGATGTTGCGATTGCGAAGAGCACGTGTTGGGGAGAATCAATCGAATCGTTGGACATTGAGTTCT GGAAATAAATCGATATTTTTAGTTTTTTTGCCTTATTAGATTCAAAAAATCTAAAAAAGAGCGAA TTTCATAACGAGAATTTTCAAAAAAAAATTCGAAAAAACCTAATTCGGTGTCGGCGTTTCGATTT TTAGATATTTCAAAAAATTTCGATTTTTCAAAAATTAGCTTAAAA Right flanking sequence: Indices 11912827 -- 11913326 ATTTTCATCTTATAAAATCTTATTTTATGGTTAATTTTCTGAACAGTTTTTTTTTTGATTTTTCG ATTTTCTCTCAACTCAGAGAAAAAAGTGAAAAATCGAAAAATGGCACACTTGCTCCGAGTCACAG CGATCGGAAATTGTTTTTTTTAGGAATTTTTGTAATTTTTGATTGAATAAAAATCAATTTCCGCC GCTGTGACACGGAATTACGTCTTTTCTTCTTTTTTTCCGAAGTTTCGCTATGAAATTCGGTCGTT TTTGACCAATTTTGAGCAATTTTTCCAGGAAAACGCACTAGATGGGGGAAGAGATAGTCGACAAA AACCAGTGATTCCTCATAAGTTTTCGGTTGAATCGGAGCCAAAAGTTCTGCAACAGCTGTGACTG CTGTCGCTCGAACTTGAGTTTCCGGATCCATCCAAAGATGAACAAAGTATGGAAGAATCCTGTCG ATGGCCACGCTGGAATCTGATATTGTTGATAGTTCGACGAGCATT Found at i:11912894 original size:8 final size:8 Alignment explanation
Indices: 11912877--11912896 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 11912867 GAACAGTTTT * 11912877 TTTTTTGA 1 TTTTTCGA 11912885 TTTTTCGA 1 TTTTTCGA 11912893 TTTT 1 TTTT 11912897 CTCTCAACTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.10, C:0.05, G:0.10, T:0.75 Consensus pattern (8 bp): TTTTTCGA Left flanking sequence: Indices 11912377 -- 11912876 GACACCGCTTCACCATTGGTTCCTTGCTACACAACGCGGAGAACATTGCAGAAACTCCGTGGAGC AACGCCCCGGCGTCATCATTTTGCTGCTGCTCTCCGGCAGTGGAGACCTCGTCATCATACATCGT CGCTTGGCGGATTTCTCGCCCAGCCATGTAGAATCGATAGGCAGTATCAGCAAATTGTCCGAGAG ATGTTGCGATTGCGAAGAGCACGTGTTGGGGAGAATCAATCGAATCGTTGGACATTGAGTTCTGG AAATAAATCGATATTTTTAGTTTTTTTGCCTTATTAGATTCAAAAAATCTAAAAAAGAGCGAATT TCATAACGAGAATTTTCAAAAAAAAATTCGAAAAAACCTAATTCGGTGTCGGCGTTTCGATTTTT AGATATTTCAAAAAATTTCGATTTTTCAAAAATTAGCTTAAAATTTTGGTTTTTTGTTTTATTTT CATCTTATAAAATCTTATTTTATGGTTAATTTTCTGAACAGTTTT Right flanking sequence: Indices 11912897 -- 11913396 CTCTCAACTCAGAGAAAAAAGTGAAAAATCGAAAAATGGCACACTTGCTCCGAGTCACAGCGATC GGAAATTGTTTTTTTTAGGAATTTTTGTAATTTTTGATTGAATAAAAATCAATTTCCGCCGCTGT GACACGGAATTACGTCTTTTCTTCTTTTTTTCCGAAGTTTCGCTATGAAATTCGGTCGTTTTTGA CCAATTTTGAGCAATTTTTCCAGGAAAACGCACTAGATGGGGGAAGAGATAGTCGACAAAAACCA GTGATTCCTCATAAGTTTTCGGTTGAATCGGAGCCAAAAGTTCTGCAACAGCTGTGACTGCTGTC GCTCGAACTTGAGTTTCCGGATCCATCCAAAGATGAACAAAGTATGGAAGAATCCTGTCGATGGC CACGCTGGAATCTGATATTGTTGATAGTTCGACGAGCATTCGAATGGCATCCTGAAATTTTTTAA TATTAAACTTTTTTTTTTGGAAAACTAGAAAAAAACTAACAGTTT Found at i:11913054 original size:8 final size:8 Alignment explanation
Indices: 11913041--11913058 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11913031 CGGAATTACG 11913041 TCTTTTCT 1 TCTTTTCT * 11913049 TCTTTTTT 1 TCTTTTCT 11913057 TC 1 TC 11913059 CGAAGTTTCG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78 Consensus pattern (8 bp): TCTTTTCT Left flanking sequence: Indices 11912541 -- 11913040 CGATAGGCAGTATCAGCAAATTGTCCGAGAGATGTTGCGATTGCGAAGAGCACGTGTTGGGGAGA ATCAATCGAATCGTTGGACATTGAGTTCTGGAAATAAATCGATATTTTTAGTTTTTTTGCCTTAT TAGATTCAAAAAATCTAAAAAAGAGCGAATTTCATAACGAGAATTTTCAAAAAAAAATTCGAAAA AACCTAATTCGGTGTCGGCGTTTCGATTTTTAGATATTTCAAAAAATTTCGATTTTTCAAAAATT AGCTTAAAATTTTGGTTTTTTGTTTTATTTTCATCTTATAAAATCTTATTTTATGGTTAATTTTC TGAACAGTTTTTTTTTTGATTTTTCGATTTTCTCTCAACTCAGAGAAAAAAGTGAAAAATCGAAA AATGGCACACTTGCTCCGAGTCACAGCGATCGGAAATTGTTTTTTTTAGGAATTTTTGTAATTTT TGATTGAATAAAAATCAATTTCCGCCGCTGTGACACGGAATTACG Right flanking sequence: Indices 11913059 -- 11913558 CGAAGTTTCGCTATGAAATTCGGTCGTTTTTGACCAATTTTGAGCAATTTTTCCAGGAAAACGCA CTAGATGGGGGAAGAGATAGTCGACAAAAACCAGTGATTCCTCATAAGTTTTCGGTTGAATCGGA GCCAAAAGTTCTGCAACAGCTGTGACTGCTGTCGCTCGAACTTGAGTTTCCGGATCCATCCAAAG ATGAACAAAGTATGGAAGAATCCTGTCGATGGCCACGCTGGAATCTGATATTGTTGATAGTTCGA CGAGCATTCGAATGGCATCCTGAAATTTTTTAATATTAAACTTTTTTTTTTGGAAAACTAGAAAA AAACTAACAGTTTTTCCCTGAATTGTTCTCAGAGCTCTCAGATTTGCTGTAATCAATGATACAAA GAGGAATGCAAATGATTTCGATTCATCATTCTCTGATAGCCGTGCCCACCACAACTGCTTCTCCC GTTTCAGCTTCGTAATCACATCATCTGGCTCCAAATACGAAAACT Found at i:11913101 original size:10 final size:10 Alignment explanation
Indices: 11913086--11913109 Score: 41 Period size: 10 Copynumber: 2.4 Consensus size: 10 11913076 ATTCGGTCGT 11913086 TTTTGACCAA 1 TTTTGACCAA * 11913096 TTTTGAGCAA 1 TTTTGACCAA 11913106 TTTT 1 TTTT 11913110 TCCAGGAAAA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50 Consensus pattern (10 bp): TTTTGACCAA Left flanking sequence: Indices 11912586 -- 11913085 AAGAGCACGTGTTGGGGAGAATCAATCGAATCGTTGGACATTGAGTTCTGGAAATAAATCGATAT TTTTAGTTTTTTTGCCTTATTAGATTCAAAAAATCTAAAAAAGAGCGAATTTCATAACGAGAATT TTCAAAAAAAAATTCGAAAAAACCTAATTCGGTGTCGGCGTTTCGATTTTTAGATATTTCAAAAA ATTTCGATTTTTCAAAAATTAGCTTAAAATTTTGGTTTTTTGTTTTATTTTCATCTTATAAAATC TTATTTTATGGTTAATTTTCTGAACAGTTTTTTTTTTGATTTTTCGATTTTCTCTCAACTCAGAG AAAAAAGTGAAAAATCGAAAAATGGCACACTTGCTCCGAGTCACAGCGATCGGAAATTGTTTTTT TTAGGAATTTTTGTAATTTTTGATTGAATAAAAATCAATTTCCGCCGCTGTGACACGGAATTACG TCTTTTCTTCTTTTTTTCCGAAGTTTCGCTATGAAATTCGGTCGT Right flanking sequence: Indices 11913110 -- 11913609 TCCAGGAAAACGCACTAGATGGGGGAAGAGATAGTCGACAAAAACCAGTGATTCCTCATAAGTTT TCGGTTGAATCGGAGCCAAAAGTTCTGCAACAGCTGTGACTGCTGTCGCTCGAACTTGAGTTTCC GGATCCATCCAAAGATGAACAAAGTATGGAAGAATCCTGTCGATGGCCACGCTGGAATCTGATAT TGTTGATAGTTCGACGAGCATTCGAATGGCATCCTGAAATTTTTTAATATTAAACTTTTTTTTTT GGAAAACTAGAAAAAAACTAACAGTTTTTCCCTGAATTGTTCTCAGAGCTCTCAGATTTGCTGTA ATCAATGATACAAAGAGGAATGCAAATGATTTCGATTCATCATTCTCTGATAGCCGTGCCCACCA CAACTGCTTCTCCCGTTTCAGCTTCGTAATCACATCATCTGGCTCCAAATACGAAAACTCTAAAG CCTGACTGAAATCATCAGTCGACGGATCGGACGACGTTGATGTAC Found at i:11915025 original size:7 final size:7 Alignment explanation
Indices: 11915013--11915026 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11915003 CGCAAGAAGA 11915013 GGTCGAT 1 GGTCGAT 11915020 GGTCGAT 1 GGTCGAT 11915027 TTGACGGAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.43, T:0.29 Consensus pattern (7 bp): GGTCGAT Left flanking sequence: Indices 11914513 -- 11915012 TGCTCGAAAAGCTAAAGAGGTAATTTGTTTTAAATAAAATCATCAACTTTTTTCATCGTTTTCAA AGTGCTCACGTGTCTGCAAGTGATATAATATCGACATTCAACAATTTTTTCGAGAATCTCCCGAA CGACAAGAGCTTCGACATGGCTTATAAAGGTTTGTGATACCGAAAAATGATTCGAAACTTTAAAT ACTTGAACTTTTTACAGTCTATCTCAAAGATTTGGCTGATGTGGATGACGGTTCGAGATGTGAAT CCTCGTCGATTTTGACTCAAAACCAGCCGACGACAATCGCCTCGTCTGGATTTGTGATGTCTAAT CCGAATGTGGTAGATCAAATTTTTGCTACTTCGAAAGGTTGTTAAGAAAAAAAGTTTCAGAAAAG CCCATCGCTTCCGTCGTCGGCCACTAATTGGAACTCGGAATATTCGGTGACCGAACCGACGATGA GCCCGGCGGATCAGATTCTGAAGGATAGCGTTGCTCGCAAGAAGA Right flanking sequence: Indices 11915027 -- 11915526 TTGACGGAGCTTAACCAGCTCTACGGAAAAGGCTATAAGCCGCCAGCCCCATCTGCACGAACGCC ACCAACAATTTATGAGAACTTGGCAATTAATGCTCCTTCGTCCCCCTCTGCTACTGATGCATCGT CGGTTCCGTTGACTTTTATCGAAAAGCATCACGAATTCAAAAAACTCGTGCCATCTGGGACTGAC GGAAGATTCGAGTTGTTTCTTAAAGTGGCCGATTGTTTCGATTAAAAGAAGCAAAATCTCTCTTG AACTCTTATCATAATCTTGTCGCAATAAACTTTGAATCTCACCACATTTTCTCTGCCTCCACTAC GAACGGCCTCGTGCTCAATCGATCGAAGAGCGTGTGCTTTTGAAAAGCTCTGACCATTACAGCAT ACTTTTGTTTTACAAGAACCTTTTTGATAGGACAACAATTCGGACTTTTCATGAGCGCTTTCCGA ATATCGATAATTCGCTGTGGAAACGGGTCCAGTGACGCCAAATCT Found at i:11915776 original size:9 final size:9 Alignment explanation
Indices: 11915759--11915776 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11915749 TAATATGTCT * 11915759 GAAATTGAA 1 GAAAATGAA 11915768 GAAAATGAA 1 GAAAATGAA 11915777 ATAAATGGAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17 Consensus pattern (9 bp): GAAAATGAA Left flanking sequence: Indices 11915259 -- 11915758 TCGATTAAAAGAAGCAAAATCTCTCTTGAACTCTTATCATAATCTTGTCGCAATAAACTTTGAAT CTCACCACATTTTCTCTGCCTCCACTACGAACGGCCTCGTGCTCAATCGATCGAAGAGCGTGTGC TTTTGAAAAGCTCTGACCATTACAGCATACTTTTGTTTTACAAGAACCTTTTTGATAGGACAACA ATTCGGACTTTTCATGAGCGCTTTCCGAATATCGATAATTCGCTGTGGAAACGGGTCCAGTGACG CCAAATCTTGTCTAACGAATACTTTATACACAAAGACGCCTTCATGCGTTCTTCCTCGAGCGACT TTCATGAAACGGGTGCTCCCAAGACTGAAATTCGAATTTATTTTTCCCACTTGCTCATCGCAAAT ACTTACTTTTCGACTGCATCACATGACAAATCGTTGAGATATACCTCCACGGGCAGAATTTCCGA CGGATTCGTTGTGAAAAGTGAGTTTATATTACCCATAATATGTCT Right flanking sequence: Indices 11915777 -- 11916276 ATAAATGGATAGATCGTCGGGAAAAAATTGTCTGAAATTGCTGAAGACGCTCAGTTTGGCATGTG AGAAATGACGGAGAACAAGGAAAGAGTATGTGGAAGTGAGAGACGCAGAGAGAAAAGTACGGCGG AGCGCGAATTCGATTCAAGACTGTGAGCGTTCGCGAACCGTTCTTTTTAATTAAAATCAACTTTT ATCGACCCATTTTTTCTTCTTATACACTCATTGTCTTATTTATTTAAATGAAAAATTATAAAAAG TACTAAATGTTTTTCTATTACAACTAAATTCTTGCCAGCATAAACTTTTATGTATTTTCACTGCC TAAATGTTAAAAAAAGAGTTTTTTTTTACTTTTTATTCATTAAATTCAAGTTAAACCCCCAATAA TTAGATTATCAACGATAATTTATATCATTTCTCGAAAAAAAAAAGTTTTTTGTTTTGATCACTTT AAAATTTTTGAAAAGTTTGATGTGCAGGGAGTCTCTTTGATGTGC Found at i:11915816 original size:10 final size:9 Alignment explanation
Indices: 11915801--11915821 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 11915791 CGTCGGGAAA 11915801 AAATTGTCTG 1 AAATTG-CTG 11915811 AAATTGCTG 1 AAATTGCTG 11915820 AA 1 AA 11915822 GACGCTCAGT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 5 0.45 10 6 0.55 ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33 Consensus pattern (9 bp): AAATTGCTG Left flanking sequence: Indices 11915301 -- 11915800 TCTTGTCGCAATAAACTTTGAATCTCACCACATTTTCTCTGCCTCCACTACGAACGGCCTCGTGC TCAATCGATCGAAGAGCGTGTGCTTTTGAAAAGCTCTGACCATTACAGCATACTTTTGTTTTACA AGAACCTTTTTGATAGGACAACAATTCGGACTTTTCATGAGCGCTTTCCGAATATCGATAATTCG CTGTGGAAACGGGTCCAGTGACGCCAAATCTTGTCTAACGAATACTTTATACACAAAGACGCCTT CATGCGTTCTTCCTCGAGCGACTTTCATGAAACGGGTGCTCCCAAGACTGAAATTCGAATTTATT TTTCCCACTTGCTCATCGCAAATACTTACTTTTCGACTGCATCACATGACAAATCGTTGAGATAT ACCTCCACGGGCAGAATTTCCGACGGATTCGTTGTGAAAAGTGAGTTTATATTACCCATAATATG TCTGAAATTGAAGAAAATGAAATAAATGGATAGATCGTCGGGAAA Right flanking sequence: Indices 11915822 -- 11916321 GACGCTCAGTTTGGCATGTGAGAAATGACGGAGAACAAGGAAAGAGTATGTGGAAGTGAGAGACG CAGAGAGAAAAGTACGGCGGAGCGCGAATTCGATTCAAGACTGTGAGCGTTCGCGAACCGTTCTT TTTAATTAAAATCAACTTTTATCGACCCATTTTTTCTTCTTATACACTCATTGTCTTATTTATTT AAATGAAAAATTATAAAAAGTACTAAATGTTTTTCTATTACAACTAAATTCTTGCCAGCATAAAC TTTTATGTATTTTCACTGCCTAAATGTTAAAAAAAGAGTTTTTTTTTACTTTTTATTCATTAAAT TCAAGTTAAACCCCCAATAATTAGATTATCAACGATAATTTATATCATTTCTCGAAAAAAAAAAG TTTTTTGTTTTGATCACTTTAAAATTTTTGAAAAGTTTGATGTGCAGGGAGTCTCTTTGATGTGC AGGTTATCACTCTGGAGTACGGTAGTTCATGTTTCGAAAATTACT Found at i:11916043 original size:10 final size:9 Alignment explanation
Indices: 11916022--11916043 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 11916012 TATTTAAATG * 11916022 AAAAATTAT 1 AAAAAGTAT 11916031 AAAAAGTACT 1 AAAAAGTA-T 11916041 AAA 1 AAA 11916044 TGTTTTTCTA Statistics Matches: 11, Mismatches: 1, Indels: 1 0.85 0.08 0.08 Matches are distributed among these distances: 9 7 0.64 10 4 0.36 ACGTcount: A:0.68, C:0.05, G:0.05, T:0.23 Consensus pattern (9 bp): AAAAAGTAT Left flanking sequence: Indices 11915522 -- 11916021 AATCTTGTCTAACGAATACTTTATACACAAAGACGCCTTCATGCGTTCTTCCTCGAGCGACTTTC ATGAAACGGGTGCTCCCAAGACTGAAATTCGAATTTATTTTTCCCACTTGCTCATCGCAAATACT TACTTTTCGACTGCATCACATGACAAATCGTTGAGATATACCTCCACGGGCAGAATTTCCGACGG ATTCGTTGTGAAAAGTGAGTTTATATTACCCATAATATGTCTGAAATTGAAGAAAATGAAATAAA TGGATAGATCGTCGGGAAAAAATTGTCTGAAATTGCTGAAGACGCTCAGTTTGGCATGTGAGAAA TGACGGAGAACAAGGAAAGAGTATGTGGAAGTGAGAGACGCAGAGAGAAAAGTACGGCGGAGCGC GAATTCGATTCAAGACTGTGAGCGTTCGCGAACCGTTCTTTTTAATTAAAATCAACTTTTATCGA CCCATTTTTTCTTCTTATACACTCATTGTCTTATTTATTTAAATG Right flanking sequence: Indices 11916044 -- 11916543 TGTTTTTCTATTACAACTAAATTCTTGCCAGCATAAACTTTTATGTATTTTCACTGCCTAAATGT TAAAAAAAGAGTTTTTTTTTACTTTTTATTCATTAAATTCAAGTTAAACCCCCAATAATTAGATT ATCAACGATAATTTATATCATTTCTCGAAAAAAAAAAGTTTTTTGTTTTGATCACTTTAAAATTT TTGAAAAGTTTGATGTGCAGGGAGTCTCTTTGATGTGCAGGTTATCACTCTGGAGTACGGTAGTT CATGTTTCGAAAATTACTTTCAGTTTGCTTGGTTTTTGTTTCCTATTCTTAATGAACTTCTCTCT GTTTTTGTCTTTTCCGCTGCAAATTCAATTTTTAATTTTTGTTTTCAGAATGTCAGACGTTGCTG AAGAGAAAGCCGAATTCCTCGTCATTCGCACATATGGATCGGAGTCTTTCCGCAAAGAATGTGCT GATCTCATTGTAAGTATTCAATTCTCATTTCGAAAAATTGAAATT Found at i:11916407 original size:7 final size:7 Alignment explanation
Indices: 11916395--11916408 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11916385 CTGCAAATTC 11916395 AATTTTT 1 AATTTTT 11916402 AATTTTT 1 AATTTTT 11916409 GTTTTCAGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): AATTTTT Left flanking sequence: Indices 11915895 -- 11916394 AAAGTACGGCGGAGCGCGAATTCGATTCAAGACTGTGAGCGTTCGCGAACCGTTCTTTTTAATTA AAATCAACTTTTATCGACCCATTTTTTCTTCTTATACACTCATTGTCTTATTTATTTAAATGAAA AATTATAAAAAGTACTAAATGTTTTTCTATTACAACTAAATTCTTGCCAGCATAAACTTTTATGT ATTTTCACTGCCTAAATGTTAAAAAAAGAGTTTTTTTTTACTTTTTATTCATTAAATTCAAGTTA AACCCCCAATAATTAGATTATCAACGATAATTTATATCATTTCTCGAAAAAAAAAAGTTTTTTGT TTTGATCACTTTAAAATTTTTGAAAAGTTTGATGTGCAGGGAGTCTCTTTGATGTGCAGGTTATC ACTCTGGAGTACGGTAGTTCATGTTTCGAAAATTACTTTCAGTTTGCTTGGTTTTTGTTTCCTAT TCTTAATGAACTTCTCTCTGTTTTTGTCTTTTCCGCTGCAAATTC Right flanking sequence: Indices 11916409 -- 11916908 GTTTTCAGAATGTCAGACGTTGCTGAAGAGAAAGCCGAATTCCTCGTCATTCGCACATATGGATC GGAGTCTTTCCGCAAAGAATGTGCTGATCTCATTGTAAGTATTCAATTCTCATTTCGAAAAATTG AAATTTTAATATTTTTCAGGAAAAAGAGCTGCACAAATTAAATGCAACAATCGCTCGCGTCCCGG TGGGGGAGTTTGTCGCTTACGCGGAGAACGCTGTCAAAAATGAGACGGATTCCGAAGCTGTTGGC TCATCGTCGGTCAAACGTGAAAACTCGGCAAATGATTCGCCCGCTAACACCAATGACGTCGACAT TGTCTCGTCACCGGTCAAGAGAGGACGTGGGCGCAAAGCAAAGAATCCGTCCGCTGACGCGGATG TCAACGACACCGGCTCATCACCAGTCAAGAAGGGACGTGGTCGCCCAATAAAGAATCCTTCAGCT GATGCTGGTTCCCCATTGGTCAAGAAAGGACGTGGACGCAGAGCG Found at i:11918242 original size:9 final size:10 Alignment explanation
Indices: 11918213--11918234 Score: 30 Period size: 10 Copynumber: 2.2 Consensus size: 10 11918203 TGAGTTCAGG 11918213 AATTAGAAAA 1 AATTAGAAAA ** 11918223 AATTCAAAAA 1 AATTAGAAAA 11918233 AA 1 AA 11918235 AATTAAAATT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.73, C:0.05, G:0.05, T:0.18 Consensus pattern (10 bp): AATTAGAAAA Left flanking sequence: Indices 11917713 -- 11918212 CGGGGCTGAAAATGTTGGAAAGGGCAACCGGGTGGATGGATGGGGCGTTTGAAACGCATACAGAT GAAGAAGAATGTGGCAGGAATTTGAAAAAAAAACATTTTGAATACGATTATTAGTATTACACGTT AGTCAGTTTCGATGGAAAAACCGGCGAATGTGTAATATTTTACAAAAAATGAAATAAAAAGTGTC AATCACCGGAGAAAAGAAAACAACAACGGATTTTTGGGGGAATTTGTAATTAAAAATATATAATT GGCAATGTATTTTGTGTGTGTGTGGGGACAGAAAATGTGAAAAATGGTGCTAGAATAAAGCCAAA ATGAAGGAATTCTAGAAAACAATGAAAATGCACAAATTGTACTAGGAAGGAGAACATATGAACGA CCAAAAAAAAAATGATTGCAGTGAAGAAACGAAGACGAAGATCTTATTCCAATTGGAGAAATGGG CTTGGCCCCAAAAATGAATATTTTATCGGAATATGTGAGTTCAGG Right flanking sequence: Indices 11918235 -- 11918734 AATTAAAATTAATAGGAATGATTTTTCATATTATTTATCAGTGATTGTGGGTTGAACACGCCTCC CTGACTTGAGGACGAACCTGCTGACGAGGATGACGTGGATGAGGGTGTCGATGAGACGACGGCCG AGCCGGTCGCCGTTACGACAGCCGTGGCCGAGGAAGATGACCCGTTGTAGCGTTGGATGTTCTCC AGTGGGGTTATCATGTTGAACCTGGATTTGAAAAAAAAATACAATGTTTTATTATACAATCGCAA AAAATGCACCTTTTGAAATTGGGGCGCAATCGCGCTCTAATGCTGGTTAGTATTGGTGGCAAAAT CGTAAATTTAAACGTTTATATTAGAGAGTGTGGATAGTTAGAGAGTGACAGACATCCGGGACCCA ATGGGGCGGTGCGCGCGGAAGAGTCGATTTGTGTCGATTTACGAAATTTCCCTCGTTGTCATCAT TTCGTAAATCGACACAAATCGTCTCTTCCGCGCGCCCCGCCCCAT Found at i:11918339 original size:9 final size:9 Alignment explanation
Indices: 11918321--11918341 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 11918311 ACGAACCTGC 11918321 TGACGAGGA 1 TGACGAGGA * 11918330 TGACGTGGA 1 TGACGAGGA 11918339 TGA 1 TGA 11918342 GGGTGTCGAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.29, C:0.10, G:0.43, T:0.19 Consensus pattern (9 bp): TGACGAGGA Left flanking sequence: Indices 11917821 -- 11918320 ACGATTATTAGTATTACACGTTAGTCAGTTTCGATGGAAAAACCGGCGAATGTGTAATATTTTAC AAAAAATGAAATAAAAAGTGTCAATCACCGGAGAAAAGAAAACAACAACGGATTTTTGGGGGAAT TTGTAATTAAAAATATATAATTGGCAATGTATTTTGTGTGTGTGTGGGGACAGAAAATGTGAAAA ATGGTGCTAGAATAAAGCCAAAATGAAGGAATTCTAGAAAACAATGAAAATGCACAAATTGTACT AGGAAGGAGAACATATGAACGACCAAAAAAAAAATGATTGCAGTGAAGAAACGAAGACGAAGATC TTATTCCAATTGGAGAAATGGGCTTGGCCCCAAAAATGAATATTTTATCGGAATATGTGAGTTCA GGAATTAGAAAAAATTCAAAAAAAAATTAAAATTAATAGGAATGATTTTTCATATTATTTATCAG TGATTGTGGGTTGAACACGCCTCCCTGACTTGAGGACGAACCTGC Right flanking sequence: Indices 11918342 -- 11918841 GGGTGTCGATGAGACGACGGCCGAGCCGGTCGCCGTTACGACAGCCGTGGCCGAGGAAGATGACC CGTTGTAGCGTTGGATGTTCTCCAGTGGGGTTATCATGTTGAACCTGGATTTGAAAAAAAAATAC AATGTTTTATTATACAATCGCAAAAAATGCACCTTTTGAAATTGGGGCGCAATCGCGCTCTAATG CTGGTTAGTATTGGTGGCAAAATCGTAAATTTAAACGTTTATATTAGAGAGTGTGGATAGTTAGA GAGTGACAGACATCCGGGACCCAATGGGGCGGTGCGCGCGGAAGAGTCGATTTGTGTCGATTTAC GAAATTTCCCTCGTTGTCATCATTTCGTAAATCGACACAAATCGTCTCTTCCGCGCGCCCCGCCC CATTGGGTCCCGGATGTCTGTCACTCTCTAACTATCCACACTCTCTGTACCGGTAATAATCATTT ACGACGTCGTTTTCGATGATTTTTATATCGAAATTGATGAAAAAA Found at i:11920028 original size:7 final size:7 Alignment explanation
Indices: 11920016--11920029 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11920006 CATCGAGAGT 11920016 GAGATTG 1 GAGATTG 11920023 GAGATTG 1 GAGATTG 11920030 CTTAACTGGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.43, T:0.29 Consensus pattern (7 bp): GAGATTG Left flanking sequence: Indices 11919516 -- 11920015 GGCGGCAAACTGGTCTGTAAGAGAACCTGTTTGGGGTACACTTTAGAGGTGTCCGGTGGTACTCA CTAATGTTGAAACTTGACGAGTCATGTGCATTATCTCCCATTCCTTGCATTGGATTCCATGAGAG AAGTGAAGGATCAAATGGATCTGCGGGAACAACATCGTTTCTGAAATTTTCTTTTAATTTTTAGT GAATAATTAAATTTAGTAACAAACCCAAAATTGCTGGCCTTCGATCGATCCGCGTGCTTTGTCAT GTGCTTTTGCAGATAAGTCTGTTGAGTGTACGATTTTCCGCAAAACGGGCAAATGTGAATCTTAA GACGCTTAATAATTGATTAGATTCATATAAATATTTGAAATTTCGGTGAGACTTACCTTCAGATG CTTTGACTCTTTGTGCTTCGGAATGTGATCCAAGAGGCTCTGCTCGTCGGTGAAGCATTTATAGC AACTGTTACATTTGAATGGCTTATCAGTTTGATGGCATCGAGAGT Right flanking sequence: Indices 11920030 -- 11920529 CTTAACTGGGAGAATGCTTTGTCGCATCCCGTGAATTTGCACTGAAAATTTGAGGAATTGTTTCA AGACTTCCAGCCTAGACAGGCCTGAAGGCGGCCTACTCTGCATTCCTCTGCCAAATGCTGCAGCC TTCGAGAATCTAAGAATGGGTCTAATCGCGTGGATAAGGCTGTATAATTTTACTGACTGAAATTG ACTGAAATTGAATTAGACTTGAAATTGAGGAAATTCAGAATTTTGTTTTTTTTTGTTGTTTTTTT CAGTGATTTGATTTGTTTGAACGTTTTTCCAGGGTTTTCAATAGGTACACATATATTTGCCGGCA AAGTAGGCACCGCTCAGGTAGGCATTTTCTGACTATACATATTTCACAAACCTTATACGGTTTCT CTCCTGTATGTGTTCGAATGTGCTGCTGAAGGTGTGATAGCTGAGTGAACTTCTTGCCGCAATAG TTACATGGCCCAAATGGCTTGATGCCAAGATGAATTCTCATGTGT Found at i:11920228 original size:10 final size:10 Alignment explanation
Indices: 11920213--11920235 Score: 46 Period size: 10 Copynumber: 2.3 Consensus size: 10 11920203 ATAATTTTAC 11920213 TGACTGAAAT 1 TGACTGAAAT 11920223 TGACTGAAAT 1 TGACTGAAAT 11920233 TGA 1 TGA 11920236 ATTAGACTTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30 Consensus pattern (10 bp): TGACTGAAAT Left flanking sequence: Indices 11919713 -- 11920212 ATAATTAAATTTAGTAACAAACCCAAAATTGCTGGCCTTCGATCGATCCGCGTGCTTTGTCATGT GCTTTTGCAGATAAGTCTGTTGAGTGTACGATTTTCCGCAAAACGGGCAAATGTGAATCTTAAGA CGCTTAATAATTGATTAGATTCATATAAATATTTGAAATTTCGGTGAGACTTACCTTCAGATGCT TTGACTCTTTGTGCTTCGGAATGTGATCCAAGAGGCTCTGCTCGTCGGTGAAGCATTTATAGCAA CTGTTACATTTGAATGGCTTATCAGTTTGATGGCATCGAGAGTGAGATTGGAGATTGCTTAACTG GGAGAATGCTTTGTCGCATCCCGTGAATTTGCACTGAAAATTTGAGGAATTGTTTCAAGACTTCC AGCCTAGACAGGCCTGAAGGCGGCCTACTCTGCATTCCTCTGCCAAATGCTGCAGCCTTCGAGAA TCTAAGAATGGGTCTAATCGCGTGGATAAGGCTGTATAATTTTAC Right flanking sequence: Indices 11920236 -- 11920735 ATTAGACTTGAAATTGAGGAAATTCAGAATTTTGTTTTTTTTTGTTGTTTTTTTCAGTGATTTGA TTTGTTTGAACGTTTTTCCAGGGTTTTCAATAGGTACACATATATTTGCCGGCAAAGTAGGCACC GCTCAGGTAGGCATTTTCTGACTATACATATTTCACAAACCTTATACGGTTTCTCTCCTGTATGT GTTCGAATGTGCTGCTGAAGGTGTGATAGCTGAGTGAACTTCTTGCCGCAATAGTTACATGGCCC AAATGGCTTGATGCCAAGATGAATTCTCATGTGTTGGGAGAGATAGGATGAGTTGGCAAATGCCT GGAAATTTCAGTTTTTTTAAAGGTCACAGACGTACTAATTGATGTAATTCTGACTATTAGTATAA GTTAGATGTATTGAAAACTCTTATGTACCAAATCCTTAGCATGGCTATTTCCATTTAAAAAAAAG TAAATCTATTCAAAATCATTTGTATTTTCAGAAAGTATATGTATA Found at i:11920280 original size:10 final size:10 Alignment explanation
Indices: 11920265--11920288 Score: 41 Period size: 10 Copynumber: 2.4 Consensus size: 10 11920255 AAATTCAGAA * 11920265 TTTTGTTTTT 1 TTTTGTTGTT 11920275 TTTTGTTGTT 1 TTTTGTTGTT 11920285 TTTT 1 TTTT 11920289 TCAGTGATTT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88 Consensus pattern (10 bp): TTTTGTTGTT Left flanking sequence: Indices 11919765 -- 11920264 TGCTTTGTCATGTGCTTTTGCAGATAAGTCTGTTGAGTGTACGATTTTCCGCAAAACGGGCAAAT GTGAATCTTAAGACGCTTAATAATTGATTAGATTCATATAAATATTTGAAATTTCGGTGAGACTT ACCTTCAGATGCTTTGACTCTTTGTGCTTCGGAATGTGATCCAAGAGGCTCTGCTCGTCGGTGAA GCATTTATAGCAACTGTTACATTTGAATGGCTTATCAGTTTGATGGCATCGAGAGTGAGATTGGA GATTGCTTAACTGGGAGAATGCTTTGTCGCATCCCGTGAATTTGCACTGAAAATTTGAGGAATTG TTTCAAGACTTCCAGCCTAGACAGGCCTGAAGGCGGCCTACTCTGCATTCCTCTGCCAAATGCTG CAGCCTTCGAGAATCTAAGAATGGGTCTAATCGCGTGGATAAGGCTGTATAATTTTACTGACTGA AATTGACTGAAATTGAATTAGACTTGAAATTGAGGAAATTCAGAA Right flanking sequence: Indices 11920289 -- 11920788 TCAGTGATTTGATTTGTTTGAACGTTTTTCCAGGGTTTTCAATAGGTACACATATATTTGCCGGC AAAGTAGGCACCGCTCAGGTAGGCATTTTCTGACTATACATATTTCACAAACCTTATACGGTTTC TCTCCTGTATGTGTTCGAATGTGCTGCTGAAGGTGTGATAGCTGAGTGAACTTCTTGCCGCAATA GTTACATGGCCCAAATGGCTTGATGCCAAGATGAATTCTCATGTGTTGGGAGAGATAGGATGAGT TGGCAAATGCCTGGAAATTTCAGTTTTTTTAAAGGTCACAGACGTACTAATTGATGTAATTCTGA CTATTAGTATAAGTTAGATGTATTGAAAACTCTTATGTACCAAATCCTTAGCATGGCTATTTCCA TTTAAAAAAAAGTAAATCTATTCAAAATCATTTGTATTTTCAGAAAGTATATGTATAAGTTTACT TTTAATTGAAAATTTCGAAAACATGCTCAAAATTGGCTCAAATAT Found at i:11920997 original size:8 final size:8 Alignment explanation
Indices: 11920986--11921009 Score: 34 Period size: 8 Copynumber: 3.0 Consensus size: 8 11920976 AATTGCCAAA 11920986 TTGCCGGT 1 TTGCCGGT * 11920994 TTGCCGAT 1 TTGCCGGT * 11921002 TTGTCGGT 1 TTGCCGGT 11921010 AATTTTAGAT Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.04, C:0.21, G:0.33, T:0.42 Consensus pattern (8 bp): TTGCCGGT Left flanking sequence: Indices 11920486 -- 11920985 TACATGGCCCAAATGGCTTGATGCCAAGATGAATTCTCATGTGTTGGGAGAGATAGGATGAGTTG GCAAATGCCTGGAAATTTCAGTTTTTTTAAAGGTCACAGACGTACTAATTGATGTAATTCTGACT ATTAGTATAAGTTAGATGTATTGAAAACTCTTATGTACCAAATCCTTAGCATGGCTATTTCCATT TAAAAAAAAGTAAATCTATTCAAAATCATTTGTATTTTCAGAAAGTATATGTATAAGTTTACTTT TAATTGAAAATTTCGAAAACATGCTCAAAATTGGCTCAAATATCTAAATGCGGATGACTTTGACA TTCCATCACTTTGAAGCAGATTTTGGGCAATATTTCGAGATTCTCAATTAAAAATAAACTAATTT CCAAAAAGTACAAAAATTTCTCTATATGTTGATATAAATTTCCAAAAAAAAGAATGTAGAAGTAT GTGAAAAGTATTTTGTTAGTTGACACTTTTTTGGCAATTGCCAAA Right flanking sequence: Indices 11921010 -- 11921509 AATTTTAGATTCCGGAAATTTGCGGGTTTGCCGATTTGTTTTTTTAAAGATATTTTCATAGAAGT GGTACTTTTCAAAATAGATGTAGGAACTTTCATAGGATGCGTAAAATTTTGCTGATGAAAATTGA AATTCTCAAATGTTGAAAAAAAGGTGTAAAATCATTTTTGGCAATTGCCGTTATTCCGGCAAATT CGGCAAATTGCCAATTTGCCGGAAAATGTCAACTCCGGCAATTTGTCAATATGTCTAAATTTTTT TCCAAAAAATTTCAAAACCACATACCTTGACACACTGCGTGCACTTGTAAGGTTTTGCTTCCCGC ATCTGCATCTGTTGCTGAAGCACCCCCACGTCCGGCTTTTGTTCGAACTGTAAGTACATTGAATA TAGTGGATCTTTAGAGCTCAATTGATCTAGGTTTCGGATCATTCCGTTCAAAACTTGGTAAGAGA CAGGGGGCTTTAAGATCGAATTTCGGTGTTTTTACTAGAGCCTAG Found at i:11921210 original size:9 final size:9 Alignment explanation
Indices: 11921196--11921213 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11921186 GCCGTTATTC 11921196 CGGCAAATT 1 CGGCAAATT 11921205 CGGCAAATT 1 CGGCAAATT 11921214 GCCAATTTGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22 Consensus pattern (9 bp): CGGCAAATT Left flanking sequence: Indices 11920696 -- 11921195 CTATTCAAAATCATTTGTATTTTCAGAAAGTATATGTATAAGTTTACTTTTAATTGAAAATTTCG AAAACATGCTCAAAATTGGCTCAAATATCTAAATGCGGATGACTTTGACATTCCATCACTTTGAA GCAGATTTTGGGCAATATTTCGAGATTCTCAATTAAAAATAAACTAATTTCCAAAAAGTACAAAA ATTTCTCTATATGTTGATATAAATTTCCAAAAAAAAGAATGTAGAAGTATGTGAAAAGTATTTTG TTAGTTGACACTTTTTTGGCAATTGCCAAATTGCCGGTTTGCCGATTTGTCGGTAATTTTAGATT CCGGAAATTTGCGGGTTTGCCGATTTGTTTTTTTAAAGATATTTTCATAGAAGTGGTACTTTTCA AAATAGATGTAGGAACTTTCATAGGATGCGTAAAATTTTGCTGATGAAAATTGAAATTCTCAAAT GTTGAAAAAAAGGTGTAAAATCATTTTTGGCAATTGCCGTTATTC Right flanking sequence: Indices 11921214 -- 11921713 GCCAATTTGCCGGAAAATGTCAACTCCGGCAATTTGTCAATATGTCTAAATTTTTTTCCAAAAAA TTTCAAAACCACATACCTTGACACACTGCGTGCACTTGTAAGGTTTTGCTTCCCGCATCTGCATC TGTTGCTGAAGCACCCCCACGTCCGGCTTTTGTTCGAACTGTAAGTACATTGAATATAGTGGATC TTTAGAGCTCAATTGATCTAGGTTTCGGATCATTCCGTTCAAAACTTGGTAAGAGACAGGGGGCT TTAAGATCGAATTTCGGTGTTTTTACTAGAGCCTAGTGTATTGTAAGTGTGTGTGGAAAAAAGCA AATATGTATTGGCGGGGAAAAAATGATGTACATACTTATAAAACAAGGAACACTTTTTCGCATCA AGAAATGGAAAATCACAAATCCATACATTTGATTTAGGCAGGCAAAATCCGAAAGAAAAAGGCGG ACAAAAAGTTTGCGGCCTTTACGAAAGTCGATTAGGCAAAACGGT Found at i:11921259 original size:8 final size:8 Alignment explanation
Indices: 11921243--11921259 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 11921233 TCAACTCCGG * 11921243 CAATTTGT 1 CAATATGT 11921251 CAATATGT 1 CAATATGT 11921259 C 1 C 11921260 TAAATTTTTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41 Consensus pattern (8 bp): CAATATGT Left flanking sequence: Indices 11920743 -- 11921242 TTTTAATTGAAAATTTCGAAAACATGCTCAAAATTGGCTCAAATATCTAAATGCGGATGACTTTG ACATTCCATCACTTTGAAGCAGATTTTGGGCAATATTTCGAGATTCTCAATTAAAAATAAACTAA TTTCCAAAAAGTACAAAAATTTCTCTATATGTTGATATAAATTTCCAAAAAAAAGAATGTAGAAG TATGTGAAAAGTATTTTGTTAGTTGACACTTTTTTGGCAATTGCCAAATTGCCGGTTTGCCGATT TGTCGGTAATTTTAGATTCCGGAAATTTGCGGGTTTGCCGATTTGTTTTTTTAAAGATATTTTCA TAGAAGTGGTACTTTTCAAAATAGATGTAGGAACTTTCATAGGATGCGTAAAATTTTGCTGATGA AAATTGAAATTCTCAAATGTTGAAAAAAAGGTGTAAAATCATTTTTGGCAATTGCCGTTATTCCG GCAAATTCGGCAAATTGCCAATTTGCCGGAAAATGTCAACTCCGG Right flanking sequence: Indices 11921260 -- 11921759 TAAATTTTTTTCCAAAAAATTTCAAAACCACATACCTTGACACACTGCGTGCACTTGTAAGGTTT TGCTTCCCGCATCTGCATCTGTTGCTGAAGCACCCCCACGTCCGGCTTTTGTTCGAACTGTAAGT ACATTGAATATAGTGGATCTTTAGAGCTCAATTGATCTAGGTTTCGGATCATTCCGTTCAAAACT TGGTAAGAGACAGGGGGCTTTAAGATCGAATTTCGGTGTTTTTACTAGAGCCTAGTGTATTGTAA GTGTGTGTGGAAAAAAGCAAATATGTATTGGCGGGGAAAAAATGATGTACATACTTATAAAACAA GGAACACTTTTTCGCATCAAGAAATGGAAAATCACAAATCCATACATTTGATTTAGGCAGGCAAA ATCCGAAAGAAAAAGGCGGACAAAAAGTTTGCGGCCTTTACGAAAGTCGATTAGGCAAAACGGTT GAGAACAGTGAATTGATTTATTTTTCAATGAATTTTTTCTGGAGT Found at i:11922304 original size:9 final size:9 Alignment explanation
Indices: 11922290--11922307 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11922280 GTCTCACCAC 11922290 GAAAAACTA 1 GAAAAACTA 11922299 GAAAAACTA 1 GAAAAACTA 11922308 CTGTAAAAGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11 Consensus pattern (9 bp): GAAAAACTA Left flanking sequence: Indices 11921790 -- 11922289 TGGGCGATGATGAACTGTTTTACTTTTTGGAATAAGGTTACGGTAGTGGGATTTATTAGTTTCAT TCAGGCCGAAATATAGCCGAGTTCATTTTGATTTCACGTGGTGTCAGTCTGTATCATTACAGTTT GATCTACAAAAAATGCGGGAATTTTTTCCCAGAAAAATTGTGACGTCATCACGCTCTTAACCATG CGAAATCAGGTGAGATATCCGCGTCTCAACTCCCGCATTTTTTGAAGATCAAACCGAAATATGAC ATTCTGACTCCACGTGTGATTTCCATGTGTAGGCACACACCTACCTGCCTATTCAGTAGGTAGGC AGGCAGGTACAGTTGAAAACGTGTCTACCTAACAAACCCAGATATTTTTCCCATTTACCATGTGG ACTAGAAATACACAACTCGGCCACCGATTTTTATGTTTTTGAGAAAAAGTTTATTTTCTCTGCGA CGTTGTTATGGACAACTTGTAAATTATTAGGAGAGGTCTCACCAC Right flanking sequence: Indices 11922308 -- 11922807 CTGTAAAAGGGAGGCTAAACTTTCGCGGCGAGACCCACCAAAAATGAATGATCCTTTAAACTAAT AAGAATTTTAAAACTTGAAATTGTTCTGCCACAATAAAGCTAACAGACAGCGATGAGCAATAAAT TTAAAGTTTCAAAAGTATACTAAATAGTTACTTATTTCAAAACAAATACAAACAATGGCATAGTT ACTAAGTAGTCGCGGCCACTCGTGACGTCACTCCTCTTCCACCAGAGATTCACCTAACAAGAAAA GTCTAACAAAGTCTAAGACAGAATCCAAAACACAGAAATATTTGAACCCAATATTGAATCGGCTC CGCACTTTTTCTCTCAAATTTCTTTGACCACTCCCGGTTGACTTTTGTCTCCGTATATAAACACA CACACACAAAAAAATTTTGTCTCACACACTCTCACACTCTACCGGCGACTTTTGCCCCCCAAACA ACAATTCGCAACATGTGTTAGATTGTCTAGTCGCGATGGAGCATA Found at i:11922735 original size:8 final size:8 Alignment explanation
Indices: 11922718--11922737 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 11922708 AAAATTTTGT * 11922718 CTCACACA 1 CTCTCACA 11922726 CTCTCACA 1 CTCTCACA 11922734 CTCT 1 CTCT 11922738 ACCGGCGACT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25 Consensus pattern (8 bp): CTCTCACA Left flanking sequence: Indices 11922218 -- 11922717 TTGAGAAAAAGTTTATTTTCTCTGCGACGTTGTTATGGACAACTTGTAAATTATTAGGAGAGGTC TCACCACGAAAAACTAGAAAAACTACTGTAAAAGGGAGGCTAAACTTTCGCGGCGAGACCCACCA AAAATGAATGATCCTTTAAACTAATAAGAATTTTAAAACTTGAAATTGTTCTGCCACAATAAAGC TAACAGACAGCGATGAGCAATAAATTTAAAGTTTCAAAAGTATACTAAATAGTTACTTATTTCAA AACAAATACAAACAATGGCATAGTTACTAAGTAGTCGCGGCCACTCGTGACGTCACTCCTCTTCC ACCAGAGATTCACCTAACAAGAAAAGTCTAACAAAGTCTAAGACAGAATCCAAAACACAGAAATA TTTGAACCCAATATTGAATCGGCTCCGCACTTTTTCTCTCAAATTTCTTTGACCACTCCCGGTTG ACTTTTGTCTCCGTATATAAACACACACACACAAAAAAATTTTGT Right flanking sequence: Indices 11922738 -- 11923237 ACCGGCGACTTTTGCCCCCCAAACAACAATTCGCAACATGTGTTAGATTGTCTAGTCGCGATGGA GCATACACGAGTACATGGAGCGCATACAAAAACCCGCGGACAGTCTCAATTTCAAACAAGTGTCC GATAGAGGAGACAAAAATACAGTGTGTGAGGTGTGGAGGAGGATTGAGAGACATACATTTTCTGC TAAATGAAAGTTCACTAGGGTCTAGTCAGGGGAATGAATTGGGACTATTTAGCAGAGCTGTGAAA TTTGAGCGAATTTCAGTTTAAAAAATCAATAGCGCATTGATATTCAACCATTCAATTTTTTCGGT ATGTAAGCTTAAACTAAAATCTCAAGCTCAAAGCCTAAGCCTAAGCCTAAGCCTGGGCATAAGCC TAAGTTTAGGCCAATGCCTAAACATAAGCCTAAGCCTAAGCTAAGTCTAAGCCTAAGCCTATGCC TAGTCTATGCCGATGCCTAAGCCTAAGCCTGAGCCAAAGCCTAAG Found at i:11923498 original size:7 final size:7 Alignment explanation
Indices: 11923486--11923499 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11923476 AATGTTTTTC 11923486 CCAAAAA 1 CCAAAAA 11923493 CCAAAAA 1 CCAAAAA 11923500 AAGTCATAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00 Consensus pattern (7 bp): CCAAAAA Left flanking sequence: Indices 11922986 -- 11923485 AGAGCTGTGAAATTTGAGCGAATTTCAGTTTAAAAAATCAATAGCGCATTGATATTCAACCATTC AATTTTTTCGGTATGTAAGCTTAAACTAAAATCTCAAGCTCAAAGCCTAAGCCTAAGCCTAAGCC TGGGCATAAGCCTAAGTTTAGGCCAATGCCTAAACATAAGCCTAAGCCTAAGCTAAGTCTAAGCC TAAGCCTATGCCTAGTCTATGCCGATGCCTAAGCCTAAGCCTGAGCCAAAGCCTAAGCCTAAGCC AATGCCTAAGCCAATGACTAAGCCAAAGCCTAAGCCTAAGACTATGCCAAAGCCAAAGTCTAAAC CTAAGCCTAGGCCTAAGCCTAAGTATAGGCCTATGCCTAAGTCTAAGCATAGGCCTAAGCCTAAG CCTAAGTCTAAGCCTAAATTTGGAATTTCTAATGGTACGGCATTTACAGTTTAAGTTCAAATCTC AAGCTCTAAGCCTAAGCCCAGACTAATTGCAAAACAATGTTTTTC Right flanking sequence: Indices 11923500 -- 11923999 AAGTCATAAGGCTTAAAACACCCGGCTAGTGTTAGCTTTTAACGTTCATCTGCCTCTTTTTCTCC TCGTTTGTTCCTTTTTCTTTCAGTATAAAAGTGCAGTACTGTCTCTAATGCAAACCCTCTTTCTC TAATACACACACTCGTTGGGGAGCTCCAACTTAAAATTCGGAGAGAGAGAGCCACTGTGTTCAAT CAATAACCGATGATTTGGTATGTACACCCGTTCCAAATGCACAGAGAGAAATAGTGTGGGAGACG AAGAGACGCAGAGAGAAAGAGCGGGTCTCGTGTTGGCTCTTTTCGGTTTTCTATTGAGCGTCACC ACAAGTGCGCGGTGTGAGCTCTTTCAGCTTTCTTGAAACTATTTTGAAATTTCAGAAAAACTGGG TTGGCTCATGGCTCAGGCTTAGGCTTAGGCATAGCCTTAGGCATAGGCTTAGGCTTAAGCTTCGG CTTGGGCTTAGGCTTAGGCATAGGCTAAGCTTCAGTCTAAGATTT Found at i:11923767 original size:8 final size:8 Alignment explanation
Indices: 11923754--11923773 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 11923744 AATAGTGTGG 11923754 GAGACGAA 1 GAGACGAA * 11923762 GAGACGCA 1 GAGACGAA 11923770 GAGA 1 GAGA 11923774 GAAAGAGCGG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.45, C:0.15, G:0.40, T:0.00 Consensus pattern (8 bp): GAGACGAA Left flanking sequence: Indices 11923254 -- 11923753 AGCCAATGACTAAGCCAAAGCCTAAGCCTAAGACTATGCCAAAGCCAAAGTCTAAACCTAAGCCT AGGCCTAAGCCTAAGTATAGGCCTATGCCTAAGTCTAAGCATAGGCCTAAGCCTAAGCCTAAGTC TAAGCCTAAATTTGGAATTTCTAATGGTACGGCATTTACAGTTTAAGTTCAAATCTCAAGCTCTA AGCCTAAGCCCAGACTAATTGCAAAACAATGTTTTTCCCAAAAACCAAAAAAAGTCATAAGGCTT AAAACACCCGGCTAGTGTTAGCTTTTAACGTTCATCTGCCTCTTTTTCTCCTCGTTTGTTCCTTT TTCTTTCAGTATAAAAGTGCAGTACTGTCTCTAATGCAAACCCTCTTTCTCTAATACACACACTC GTTGGGGAGCTCCAACTTAAAATTCGGAGAGAGAGAGCCACTGTGTTCAATCAATAACCGATGAT TTGGTATGTACACCCGTTCCAAATGCACAGAGAGAAATAGTGTGG Right flanking sequence: Indices 11923774 -- 11924273 GAAAGAGCGGGTCTCGTGTTGGCTCTTTTCGGTTTTCTATTGAGCGTCACCACAAGTGCGCGGTG TGAGCTCTTTCAGCTTTCTTGAAACTATTTTGAAATTTCAGAAAAACTGGGTTGGCTCATGGCTC AGGCTTAGGCTTAGGCATAGCCTTAGGCATAGGCTTAGGCTTAAGCTTCGGCTTGGGCTTAGGCT TAGGCATAGGCTAAGCTTCAGTCTAAGATTTAGGCTTAGGCTTAGATTTAGGCTTTGGCTTGGGC CTATGCTTAGGCTTTGATTTAGGCTCAGGCTTTGGCTTAGCCTTAGGCTGAGGCTTAGGCCTAGG CTTAGGCTTAGGCTTAGGCTCAGAATTAGGCTTAGCCTCAAAGCACCAGCATATATCTCAAACTG TTGATAGTCTTGGTTCTTTATTTTATTAAATAAAACTTTGTCAATGCTCACTTTTTCAAATTTAT CCCTTTAAACTGAAATCACAATTCTCCCACGTTTTTGTATAATTT Found at i:11923903 original size:7 final size:7 Alignment explanation
Indices: 11923891--11923908 Score: 29 Period size: 7 Copynumber: 2.7 Consensus size: 7 11923881 AAAACTGGGT 11923891 TGGCTCA 1 TGGCTCA 11923898 TGGCTCA 1 TGGCTCA 11923905 -GGCT 1 TGGCT 11923909 TAGGCTTAGG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.36 7 7 0.64 ACGTcount: A:0.11, C:0.28, G:0.33, T:0.28 Consensus pattern (7 bp): TGGCTCA Left flanking sequence: Indices 11923391 -- 11923890 AAATTTGGAATTTCTAATGGTACGGCATTTACAGTTTAAGTTCAAATCTCAAGCTCTAAGCCTAA GCCCAGACTAATTGCAAAACAATGTTTTTCCCAAAAACCAAAAAAAGTCATAAGGCTTAAAACAC CCGGCTAGTGTTAGCTTTTAACGTTCATCTGCCTCTTTTTCTCCTCGTTTGTTCCTTTTTCTTTC AGTATAAAAGTGCAGTACTGTCTCTAATGCAAACCCTCTTTCTCTAATACACACACTCGTTGGGG AGCTCCAACTTAAAATTCGGAGAGAGAGAGCCACTGTGTTCAATCAATAACCGATGATTTGGTAT GTACACCCGTTCCAAATGCACAGAGAGAAATAGTGTGGGAGACGAAGAGACGCAGAGAGAAAGAG CGGGTCTCGTGTTGGCTCTTTTCGGTTTTCTATTGAGCGTCACCACAAGTGCGCGGTGTGAGCTC TTTCAGCTTTCTTGAAACTATTTTGAAATTTCAGAAAAACTGGGT Right flanking sequence: Indices 11923909 -- 11924408 TAGGCTTAGGCATAGCCTTAGGCATAGGCTTAGGCTTAAGCTTCGGCTTGGGCTTAGGCTTAGGC ATAGGCTAAGCTTCAGTCTAAGATTTAGGCTTAGGCTTAGATTTAGGCTTTGGCTTGGGCCTATG CTTAGGCTTTGATTTAGGCTCAGGCTTTGGCTTAGCCTTAGGCTGAGGCTTAGGCCTAGGCTTAG GCTTAGGCTTAGGCTCAGAATTAGGCTTAGCCTCAAAGCACCAGCATATATCTCAAACTGTTGAT AGTCTTGGTTCTTTATTTTATTAAATAAAACTTTGTCAATGCTCACTTTTTCAAATTTATCCCTT TAAACTGAAATCACAATTCTCCCACGTTTTTGTATAATTTTCCCTATAAAATTTTTTGTGTCTTC ATTTGCTACAAAAACCGTAACTGGGCGGAGCTAACCCTAGACAAAAAGATACCGATCAAATTACA AGGAGACGCTCAAGGGGAACTCTAAATGGACGTAGGTGGAGGTGC Found at i:11924942 original size:7 final size:7 Alignment explanation
Indices: 11924921--11924948 Score: 42 Period size: 7 Copynumber: 4.1 Consensus size: 7 11924911 TGAAAATCCC 11924921 AATTT-A 1 AATTTAA * 11924927 AACTTAA 1 AATTTAA 11924934 AATTTAA 1 AATTTAA 11924941 AATTTAA 1 AATTTAA 11924948 A 1 A 11924949 CAGTAATTTT Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 6 4 0.21 7 15 0.79 ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39 Consensus pattern (7 bp): AATTTAA Left flanking sequence: Indices 11924421 -- 11924920 GAGTACTGTAGTTTTTGCAAGATGATGGAAACGAAGGCACAATGAAAAAATGAATGAATGATGGA ATAAAGGGTGAAATTGAGGTAGAGAGGGTCACTTTGAAACTTCTCAAGAGATCGAAAACGTTAGA TATTTAGGAAAGGCGTACTGTGATAGTTTATGATCTTTGAAGAAGGTCTTTTTTGTTACTGGATA GTTAAATGTTAAGTTTTTAAACTGGAAATTGCTCTTTTTTTTAACTGAAAAATTGCTCATTTTCT TACATTCGAAAAATTTTTCTAAAAATCCTTAAAGAAATCCCTAAAGAAAACATTGCTTTGTAAGC TCTCAAGTAGGCAGGTAGGCATCTTCATTGTGCCTGCCTAAGGCGCCTTCTAGTTAAATTCATGT GTGAAGTTAAGAAAACATTATGTTATATCATCAGGATACCTTTTTGAAAAATTGCTCTATGAGCC AAAATTTAATTTTTTATTCGATTTCTATTTCATTTTGAAAATCCC Right flanking sequence: Indices 11924949 -- 11925448 CAGTAATTTTGTACAAACATCGGCCTACTCCTCAACTTTAAAAGGTTATATCTCGGCCAGTTTTG AAAATAGCATGACACTATTAACTACAAAATTATGAAAAAAGAAATAACAAATATTTTGTCAGTTG ACCATTTTTTAGTAGAACAAGCGGCAACTGAGATGTAGGCTGTCAAAATTGATTTATAAAATTTA TAGAAATGTTTCAAAACTTTAAGATTTGCAGTTTTAATTTCGGAAAAAATTACCTTACATATAAT ATAAAAAATATTAGAGAACAAGAAAAAAGTTAAATTTTCTGAAAAAGAGGAACAAGAAATCGAAA AACGAACAAACCACCACTGCCGCCGAAAAAAAAATGCGAACGGAACGGTTGTTGACTTTTTGGGG TGTCATCTCGCACTCTCCACACAAGAAAACAGAGAGTTTGTGTGCACTTTTTAACGAATGAAAAA GCTTTATTTTCTTGTGTTTTAGTTTTTTAACTTTGTGATGTTTTG Found at i:11925144 original size:9 final size:10 Alignment explanation
Indices: 11925130--11925150 Score: 35 Period size: 9 Copynumber: 2.2 Consensus size: 10 11925120 GTCAAAATTG 11925130 ATTTATA-AA 1 ATTTATAGAA 11925139 ATTTATAGAA 1 ATTTATAGAA 11925149 AT 1 AT 11925151 GTTTCAAAAC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 7 0.64 10 4 0.36 ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43 Consensus pattern (10 bp): ATTTATAGAA Left flanking sequence: Indices 11924630 -- 11925129 TTTTAAACTGGAAATTGCTCTTTTTTTTAACTGAAAAATTGCTCATTTTCTTACATTCGAAAAAT TTTTCTAAAAATCCTTAAAGAAATCCCTAAAGAAAACATTGCTTTGTAAGCTCTCAAGTAGGCAG GTAGGCATCTTCATTGTGCCTGCCTAAGGCGCCTTCTAGTTAAATTCATGTGTGAAGTTAAGAAA ACATTATGTTATATCATCAGGATACCTTTTTGAAAAATTGCTCTATGAGCCAAAATTTAATTTTT TATTCGATTTCTATTTCATTTTGAAAATCCCAATTTAAACTTAAAATTTAAAATTTAAACAGTAA TTTTGTACAAACATCGGCCTACTCCTCAACTTTAAAAGGTTATATCTCGGCCAGTTTTGAAAATA GCATGACACTATTAACTACAAAATTATGAAAAAAGAAATAACAAATATTTTGTCAGTTGACCATT TTTTAGTAGAACAAGCGGCAACTGAGATGTAGGCTGTCAAAATTG Right flanking sequence: Indices 11925151 -- 11925650 GTTTCAAAACTTTAAGATTTGCAGTTTTAATTTCGGAAAAAATTACCTTACATATAATATAAAAA ATATTAGAGAACAAGAAAAAAGTTAAATTTTCTGAAAAAGAGGAACAAGAAATCGAAAAACGAAC AAACCACCACTGCCGCCGAAAAAAAAATGCGAACGGAACGGTTGTTGACTTTTTGGGGTGTCATC TCGCACTCTCCACACAAGAAAACAGAGAGTTTGTGTGCACTTTTTAACGAATGAAAAAGCTTTAT TTTCTTGTGTTTTAGTTTTTTAACTTTGTGATGTTTTGATCATTAAAAGTCAGATTTGTTAAGTG AAAAAAGAAAATTATTGAATATAAAATGTAGGGTTTCCTTGTAGGCGTCAAAATTCCTGCCTGCC TGACCTTAAGGCCACCTCCGCCTGCCTCTTGCCTAAACCTGCTGATTTTTATCAAATTGCAATTT TGATAGAAATTTGAAATTTTGAAATTTAAAAATTCTTGTTAAAAC Found at i:11925623 original size:7 final size:7 Alignment explanation
Indices: 11925611--11925636 Score: 36 Period size: 7 Copynumber: 3.6 Consensus size: 7 11925601 AATTTTGATA 11925611 GAAATTT 1 GAAATTT 11925618 GAAATTTT 1 GAAA-TTT 11925626 GAAATTT 1 GAAATTT * 11925633 AAAA 1 GAAA 11925637 ATTCTTGTTA Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 7 10 0.59 8 7 0.41 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (7 bp): GAAATTT Left flanking sequence: Indices 11925111 -- 11925610 ATGTAGGCTGTCAAAATTGATTTATAAAATTTATAGAAATGTTTCAAAACTTTAAGATTTGCAGT TTTAATTTCGGAAAAAATTACCTTACATATAATATAAAAAATATTAGAGAACAAGAAAAAAGTTA AATTTTCTGAAAAAGAGGAACAAGAAATCGAAAAACGAACAAACCACCACTGCCGCCGAAAAAAA AATGCGAACGGAACGGTTGTTGACTTTTTGGGGTGTCATCTCGCACTCTCCACACAAGAAAACAG AGAGTTTGTGTGCACTTTTTAACGAATGAAAAAGCTTTATTTTCTTGTGTTTTAGTTTTTTAACT TTGTGATGTTTTGATCATTAAAAGTCAGATTTGTTAAGTGAAAAAAGAAAATTATTGAATATAAA ATGTAGGGTTTCCTTGTAGGCGTCAAAATTCCTGCCTGCCTGACCTTAAGGCCACCTCCGCCTGC CTCTTGCCTAAACCTGCTGATTTTTATCAAATTGCAATTTTGATA Right flanking sequence: Indices 11925637 -- 11926136 ATTCTTGTTAAAACGCAGATAATAGGCGAAAGGCCGGCGTGAGGCGGGCAGGCTTCAGGCAGGCG GCAGGCCCTACAATGGAAACCCTAAAAAAATGAACAAAAAAGATGGAGTGCAAAAATATTTTCTC ATCAGTGTGCCTAAGTTTTTTTTTCTTCTGAAATTCTATATAGAAATATAGACAATTATTTGCAC TTTTTGAAAATATGTATGAATATTTTTAATTGAAATTTTTGAAAAAAAAAATTTTTGCTCAAAAA CTGACTCAAATTCGCCATGTCAATGAGCCAATAGGCATAAAAGTTTTTAAAAAATTTTCAATTAC TGGCAAAATATTTAGGAAAGTACAAAAATATATCAATATTTCTATTTAAATTACCAAAAAAGCTT TGGCGAATTTGCCAATGAGATAATAATTTTTTAATTTAAACAAGCCACAGGAAAAAGGAATTTTA CCAACAGAAAAATTAAAACTCTAAATAAAGAAACAGGTGGGAAAT Found at