TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:13565381 original size:9 final size:9 Alignment explanation
Indices: 13565367--13565385 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 13565357 CTCAGCAAAC 13565367 GGCAAATTT 1 GGCAAATTT 13565376 GGCAAATTT 1 GGCAAATTT 13565385 G 1 G 13565386 CCGTATACCC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32 Consensus pattern (9 bp): GGCAAATTT Left flanking sequence: Indices 13564867 -- 13565366 CAGCCGGGCTATGAGCTCGAGCCTAGTTTAGGACTCATTGGAGTAGTCTGAAATTGAAATAATGT AAAAGAGATTACGAAATTTGGAATGATGCAATCGTTTTTCAGAGGAATCGACCCTACTTGGCACA TTTTGTTTTTTTTTTTTAATTCGAAAATGAGCCAACTTGCCCCTACGATAAAAACACAATTTACC TAGTTTTCCAATATTATAGGGTTTAGACCACATAGTTATATTTAAAAAAAAACTAGAGTAAACTG CATTTTCGTTTGCCATATTCCGTAACTCGCTCTGTATTAATTATCAAAATAACTCAATTTTGTGT CATTTTACTCAATTTTTGGGGACAAAACCAATGGTTTTGGTCAAAGTTGTAATGTCAAAACTTTG GCATGTGCGGCAAATATCGAAATTTGCAGAGCTCGGAAAATTTAACAAATCTACTTTTTTGAAAT TTGTCTTGCTCGGCAAATTCAGCAAAGTTACCGAGCTCAGCAAAC Right flanking sequence: Indices 13565386 -- 13565885 CCGTATACCCCTGCTCTGTTTATTCCCTGGGCATTCTCGTAAGACCTATAAGGCTACTATAAGTA CGAGAACATGCGAGGCACGTACTAATAAAACAATTCAAAATCTACGACAAATCATGACAAAAAAA AACAAGAAGAGGATCTTATGTAAAACAAGCAATACATCTATGTATTCATTTTTGTAAATAAAATG AGCTTCTATGTCAAAACTATAACATGGGTACAACAAAAAAGACAGCGAATAGAAAACGACGTGAT GTGAAAAAGATATTTTGAGAATGGCTATGTGCTTTTTTGCGTGAGATGGCAATATGGAGGAGGCA TGATGCAATTGTGCGAATAGTGAGAGTTTAGAGAAAACGTAGAAGGGTTATGAAATTGTTTTTTT TTCTTCATGGACCCAGAATTTGAATGTGCACAAAGAAAACTTAACCATTGGAAATTTAGGTAGAA TGCCTTGCAAAATCTATAAAAGCAACATCTTATCACGACTAACAT Found at i:13566115 original size:8 final size:8 Alignment explanation
Indices: 13566098--13566115 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 13566088 TGGAATGTAA * 13566098 AAAGTTTT 1 AAAATTTT 13566106 AAAATTTT 1 AAAATTTT 13566114 AA 1 AA 13566116 CCAAGCGTAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44 Consensus pattern (8 bp): AAAATTTT Left flanking sequence: Indices 13565598 -- 13566097 TATAACATGGGTACAACAAAAAAGACAGCGAATAGAAAACGACGTGATGTGAAAAAGATATTTTG AGAATGGCTATGTGCTTTTTTGCGTGAGATGGCAATATGGAGGAGGCATGATGCAATTGTGCGAA TAGTGAGAGTTTAGAGAAAACGTAGAAGGGTTATGAAATTGTTTTTTTTTCTTCATGGACCCAGA ATTTGAATGTGCACAAAGAAAACTTAACCATTGGAAATTTAGGTAGAATGCCTTGCAAAATCTAT AAAAGCAACATCTTATCACGACTAACATATATATTCTTCTAATTTTCAGAGTTTGAATCAGAGGG GATCCGGAAATTTCAATTTCGGCAATTTGCCGGAAAAAATGGTTTTTGTCAAAATCTTTGAAAAA AAAATATTGGGAACTTAAAAAAAAAAGATGTTTGAAAAATGCGGGAAAACCGTAGCTCGGAATTG AGAAAAAGTTGTTACTGGCAAGTTTTAGAAGCTTTTGGAATGTAA Right flanking sequence: Indices 13566116 -- 13566615 CCAAGCGTATTCTCAATTAGCTGAAAATTTAAGCAATTCCAAAAAAAAAGCAACAAACTGTTTTG AAAAACTCGATTATCGAAAAGCTCTTCCTGTATATAGATAGATGAGAAGTGTAAGACGAACATAG AAAAAAGTATTTTCTCTAGGTAATGCTCTATCTGGCCATTTCCCACGTGAAATGCTCATGTCTGT CAAATGTTGACCCATAGTTGACAGTTGTTCTTTGTCTAAATGAATGTGGCCAATATTTTTGAGTT TAGAGTAAAATAAAAATGAAGAAATAGTTTTATTTTTTGAAAGAATTGGAGAAAAAGTGAAAAAG GGGAAGAGCGGAGAAAGTTGAGCAAACGTTCAAAACGCGGTTCTCTCGACTCGATTGCTGCCACT GGGATTTCGATTGTTGTCAAGTAAAAGTAAGGAATTCGTAGAACCGATTGACGAGGCAGAGAGTG TGGAGATTGGAGAGACGCAGAATACAAAGACAATCAATTGAAGGA Found at i:13566955 original size:8 final size:8 Alignment explanation
Indices: 13566939--13566955 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 13566929 ATCTTTTCTG 13566939 AAATATTA 1 AAATATTA * 13566947 AAATTTTA 1 AAATATTA 13566955 A 1 A 13566956 TTTTGCACTG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (8 bp): AAATATTA Left flanking sequence: Indices 13566439 -- 13566938 AGGGGAAGAGCGGAGAAAGTTGAGCAAACGTTCAAAACGCGGTTCTCTCGACTCGATTGCTGCCA CTGGGATTTCGATTGTTGTCAAGTAAAAGTAAGGAATTCGTAGAACCGATTGACGAGGCAGAGAG TGTGGAGATTGGAGAGACGCAGAATACAAAGACAATCAATTGAAGGACCAATACGAGTAGTGACA CCACTGCACACCCGTTTAAGAGGACTATTCTGCAAGGTTTTTTATTGGTTTAATTTTGAAGAACT GAGTTTTCTTAACTTTGGACAAGAGATTTTAAAATTGAAAACCAGAAAAGACGGTTTAAAATTTG ACTTTTGCACCAATTTATTTTTGAATTATTTCAATTTGAATTTAGCGCAAAATTTTTTTAAACTG AAATTTGTAGCGATAAAGTTTTGGAAAACTTAGAATTTAAATTTTATGTCTAGTATTTTTTTGTT GAAAATTTAAATGTCCAATTTTATGCCTTTGCATCATCTTTTCTG Right flanking sequence: Indices 13566956 -- 13567455 TTTTGCACTGATTTTCATGATTCTTCTCTAAAGTTAAAAAGTTTCACTTTTGCGCCAAACGTTCT TAAAAATAATTTTTAAAAATTAAATTCTAAACATTTTCGGATTTTTTTATTTGCTGCTGGAATGA TTTAAACAGTGCATTTTAGAAGTCCCTTCAAAATTTCCCGAAATGCTAGAAATTCTAGTAAAAAA ATTGAGTTCCCAAAACTCACCCAATTTCAATAGTAGATCCGGCAGTTTCAAAACTTTTCAATTCG TTAAAAATTGCAGAGATCCGTTCAGAAGTGAATAGTTCACTAGATATTGATAATATGCATATTCT GAAAATAAATTGTAGAAATTATAAAAATTTCAACAAAAATCTGGGTAAAATTTAATTAACTGAAT AAAATTTTAAACAGAAAAAAACGAACGTACCCTTGGCCAATTATAGCAGCGAGCATCATTTGTGA GCAGTTTTGTGTCGCAACGATTAAAGAGAAAATTGCAACAATTAC Found at i:13567143 original size:9 final size:9 Alignment explanation
Indices: 13567125--13567143 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 13567115 AAAATTTCCC 13567125 GAAATGCTA 1 GAAATGCTA * 13567134 GAAATTCTA 1 GAAATGCTA 13567143 G 1 G 13567144 TAAAAAAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26 Consensus pattern (9 bp): GAAATGCTA Left flanking sequence: Indices 13566625 -- 13567124 GTAGTGACACCACTGCACACCCGTTTAAGAGGACTATTCTGCAAGGTTTTTTATTGGTTTAATTT TGAAGAACTGAGTTTTCTTAACTTTGGACAAGAGATTTTAAAATTGAAAACCAGAAAAGACGGTT TAAAATTTGACTTTTGCACCAATTTATTTTTGAATTATTTCAATTTGAATTTAGCGCAAAATTTT TTTAAACTGAAATTTGTAGCGATAAAGTTTTGGAAAACTTAGAATTTAAATTTTATGTCTAGTAT TTTTTTGTTGAAAATTTAAATGTCCAATTTTATGCCTTTGCATCATCTTTTCTGAAATATTAAAA TTTTAATTTTGCACTGATTTTCATGATTCTTCTCTAAAGTTAAAAAGTTTCACTTTTGCGCCAAA CGTTCTTAAAAATAATTTTTAAAAATTAAATTCTAAACATTTTCGGATTTTTTTATTTGCTGCTG GAATGATTTAAACAGTGCATTTTAGAAGTCCCTTCAAAATTTCCC Right flanking sequence: Indices 13567144 -- 13567643 TAAAAAAATTGAGTTCCCAAAACTCACCCAATTTCAATAGTAGATCCGGCAGTTTCAAAACTTTT CAATTCGTTAAAAATTGCAGAGATCCGTTCAGAAGTGAATAGTTCACTAGATATTGATAATATGC ATATTCTGAAAATAAATTGTAGAAATTATAAAAATTTCAACAAAAATCTGGGTAAAATTTAATTA ACTGAATAAAATTTTAAACAGAAAAAAACGAACGTACCCTTGGCCAATTATAGCAGCGAGCATCA TTTGTGAGCAGTTTTGTGTCGCAACGATTAAAGAGAAAATTGCAACAATTACCACAAATACGAAC ACGATTGATTCTTTTAAACCATATGCATACATTGTTGAGGAATCAGATCTGAAACATTTAAATGT TGACAATAGTTTTCGTGTGTGTGTGCAAATTGTATCAATCAACCAAATAAGAATACCACGTGGTT AAAAGTGGAGTATCGCCATTGGGGATTTTGTCTAAATACACTTAC Found at i:13567308 original size:9 final size:9 Alignment explanation
Indices: 13567287--13567309 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 13567277 TTCTGAAAAT * * 13567287 AAATTGTAG 1 AAATTATAA 13567296 AAATTATAA 1 AAATTATAA 13567305 AAATT 1 AAATT 13567310 TCAACAAAAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.57, C:0.00, G:0.09, T:0.35 Consensus pattern (9 bp): AAATTATAA Left flanking sequence: Indices 13566787 -- 13567286 AATTATTTCAATTTGAATTTAGCGCAAAATTTTTTTAAACTGAAATTTGTAGCGATAAAGTTTTG GAAAACTTAGAATTTAAATTTTATGTCTAGTATTTTTTTGTTGAAAATTTAAATGTCCAATTTTA TGCCTTTGCATCATCTTTTCTGAAATATTAAAATTTTAATTTTGCACTGATTTTCATGATTCTTC TCTAAAGTTAAAAAGTTTCACTTTTGCGCCAAACGTTCTTAAAAATAATTTTTAAAAATTAAATT CTAAACATTTTCGGATTTTTTTATTTGCTGCTGGAATGATTTAAACAGTGCATTTTAGAAGTCCC TTCAAAATTTCCCGAAATGCTAGAAATTCTAGTAAAAAAATTGAGTTCCCAAAACTCACCCAATT TCAATAGTAGATCCGGCAGTTTCAAAACTTTTCAATTCGTTAAAAATTGCAGAGATCCGTTCAGA AGTGAATAGTTCACTAGATATTGATAATATGCATATTCTGAAAAT Right flanking sequence: Indices 13567310 -- 13567809 TCAACAAAAATCTGGGTAAAATTTAATTAACTGAATAAAATTTTAAACAGAAAAAAACGAACGTA CCCTTGGCCAATTATAGCAGCGAGCATCATTTGTGAGCAGTTTTGTGTCGCAACGATTAAAGAGA AAATTGCAACAATTACCACAAATACGAACACGATTGATTCTTTTAAACCATATGCATACATTGTT GAGGAATCAGATCTGAAACATTTAAATGTTGACAATAGTTTTCGTGTGTGTGTGCAAATTGTATC AATCAACCAAATAAGAATACCACGTGGTTAAAAGTGGAGTATCGCCATTGGGGATTTTGTCTAAA TACACTTACAATCCAAAACGACCGTATATCATAATAAAACAATCCAAAAAATTTCCAAAATTATG AGTGGCAAACCTGAGTAATTGTCACTTTTTGACCGTAAATAAAAAATTTTGAAATTTTTTTTTGA AAAGTTATATTATGATATTCGGTCAATTTGTCACCATATGAGTTC Found at i:13569779 original size:9 final size:10 Alignment explanation
Indices: 13569756--13569780 Score: 36 Period size: 9 Copynumber: 2.6 Consensus size: 10 13569746 GTCTGAAATG * 13569756 AAAATATTAC 1 AAAAAATTAC 13569766 AAAAAATT-C 1 AAAAAATTAC 13569775 AAAAAA 1 AAAAAA 13569781 GCTCACAGTA Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 9 7 0.50 10 7 0.50 ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20 Consensus pattern (10 bp): AAAAAATTAC Left flanking sequence: Indices 13569256 -- 13569755 AATTCTGCAGTAGGAATTAGACACATGAATGTTTTATTCGAAACAAAAAACATTATTAGAACTAT TTTTTGAAAAGTCTAAAGTTACCTCTCCAACGCTATTATTGCCTTTCTGGAAAGTTCTTATTGGT TTAACACGTGGAATCGCTTGACCGATATACGGAGGCGGAGCCGGTCGGGAAACTTGCTCAATTTC TTCTTTTCGGCGGATGTATCGGATCTGAAAACGCTCGAATTTGAAGTTTAAAACAAAACAGACGA AGTTGGTGTTTTGAAGTTTGCGACTCTACACAAAACGACGACAGTACCCTCCGAAGTTTTCATAA TGCGACTCGGAACCTGCCTAGACTTTATAATATGAATAATTGATCAAAACTAAAAATTCTCAATA TTACGAAACCCTATAATATTCTCAGTGATTTTTACGAGGTTTTCGTGGTGGGACCCAAAAAAGTC ATGACTACGTTTAATACAATGCTCTTGAAACTTTAGTCTGAAATG Right flanking sequence: Indices 13569781 -- 13570280 GCTCACAGTATCCGATGGTTCCATAGTTGGTTGAGATGTGCGCATAATATGATTTGTACTCGAAT CGGGCGAGTATTTTTTTTGTGGTTTCTGGTTTTCTCGGCTCATTTTGTAGGTTTCATGGTGGTTG AAATGTGTGTATTTGAGTTGAAGATAACAGGTTTCAAGTTGGAAATTTTCTAGCTAGAAAAAAAT TAATTATGATTTTTGTCAGTAAGAGATGATAAGAAGAAGTGTAAATGTGAAAAATTAATACAGTC ACGACTAGGTGTCTTGAAGTGTTTTAAAGATCCAAGAAAAGCTTCAAAATGAGCATAATTATGGC TTGACTTGAATAACTTACGGTCTCGTCGCAAAAACCTACAGTACCCCTACAGTTTGGATTTTTGG GGCTGGAAAATATACCTAGTCCTGAGTATACTTATTTTATAGCCCACAACGAATCAAAATTTTTC GAAAGGTTATCATCCAAATCCAAAACTAGAAAAGTGTGAAATTTT Found at i:13569877 original size:7 final size:7 Alignment explanation
Indices: 13569861--13569877 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 13569851 GAGTATTTTT * 13569861 TTTGTGG 1 TTTCTGG 13569868 TTTCTGG 1 TTTCTGG 13569875 TTT 1 TTT 13569878 TCTCGGCTCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.06, G:0.29, T:0.65 Consensus pattern (7 bp): TTTCTGG Left flanking sequence: Indices 13569361 -- 13569860 GCCTTTCTGGAAAGTTCTTATTGGTTTAACACGTGGAATCGCTTGACCGATATACGGAGGCGGAG CCGGTCGGGAAACTTGCTCAATTTCTTCTTTTCGGCGGATGTATCGGATCTGAAAACGCTCGAAT TTGAAGTTTAAAACAAAACAGACGAAGTTGGTGTTTTGAAGTTTGCGACTCTACACAAAACGACG ACAGTACCCTCCGAAGTTTTCATAATGCGACTCGGAACCTGCCTAGACTTTATAATATGAATAAT TGATCAAAACTAAAAATTCTCAATATTACGAAACCCTATAATATTCTCAGTGATTTTTACGAGGT TTTCGTGGTGGGACCCAAAAAAGTCATGACTACGTTTAATACAATGCTCTTGAAACTTTAGTCTG AAATGAAAATATTACAAAAAATTCAAAAAAGCTCACAGTATCCGATGGTTCCATAGTTGGTTGAG ATGTGCGCATAATATGATTTGTACTCGAATCGGGCGAGTATTTTT Right flanking sequence: Indices 13569878 -- 13570377 TCTCGGCTCATTTTGTAGGTTTCATGGTGGTTGAAATGTGTGTATTTGAGTTGAAGATAACAGGT TTCAAGTTGGAAATTTTCTAGCTAGAAAAAAATTAATTATGATTTTTGTCAGTAAGAGATGATAA GAAGAAGTGTAAATGTGAAAAATTAATACAGTCACGACTAGGTGTCTTGAAGTGTTTTAAAGATC CAAGAAAAGCTTCAAAATGAGCATAATTATGGCTTGACTTGAATAACTTACGGTCTCGTCGCAAA AACCTACAGTACCCCTACAGTTTGGATTTTTGGGGCTGGAAAATATACCTAGTCCTGAGTATACT TATTTTATAGCCCACAACGAATCAAAATTTTTCGAAAGGTTATCATCCAAATCCAAAACTAGAAA AGTGTGAAATTTTTCACCGGGAATTTTTGGAAAACTTAAAAAATTGGAAATTTCTTGCCAAAAGC TTTGAGAAAAGTATAATCATGACTAAGTTTGGATTAATTTGGGTC Found at i:13571044 original size:8 final size:8 Alignment explanation
Indices: 13571033--13571052 Score: 33 Period size: 7 Copynumber: 2.6 Consensus size: 8 13571023 TAACAAATCC 13571033 GAAAATTT 1 GAAAATTT 13571041 G-AAATTT 1 GAAAATTT 13571048 GAAAA 1 GAAAA 13571053 AGTTTAAAAG Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 7 7 0.64 8 4 0.36 ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30 Consensus pattern (8 bp): GAAAATTT Left flanking sequence: Indices 13570533 -- 13571032 TCTAGACCCAAAATCTAAACCAAAAATTAATAGAAAAAGCTATTGAGAATCGATTAAAAGAGTAT TTGTGGGGTGAGATGTATATTGTGTATAACAAGAAAAAGACAAAAAAGTGTCCGTTGCTTACTCT CTACACAACCGTGTAAATAGATCGATTCCGGACCGAATGGGGGACTAGAGAAAGTGATCGAAAAG ACAAACAAAGCTGCTTCAAAGTAGGTGCGACACCCCTTATATATGTGTAGGATTAAGTGACAAGA GTGGGGACACATCTGGATTTTTTAACCCTAGCACTCGGAATTTTTCGGTCTGATTGAGCTGACTG GATTTAAAATTTTTCAATGAAAATGGTGGAAAAAAAACGTTTTAATTAAAAAAAAAATTTAATTG CAGGAATTTTTTGAAGAACATGTTTTTGAAAATATCGAAAACTGAAAAAGCATAATTTTTCAAGT TTCCAAGTAATTAAAAGTTTAGTTATACTTCGAACTAACAAATCC Right flanking sequence: Indices 13571053 -- 13571552 AGTTTAAAAGTTTTGAAATGTTAGTATTTATTTTAAATTTCTAGTAAATTGTACATAAATGAAAA CCTGCAAAATCTGACAATGATAATGATGAAAATATGAAATTTCTAACAAAAAGTCTATTTCAAAA TTTCAAATAAACGTTAGCTAAAAAATATATTGCAACAATTTTTTTCAGAGGACCCTAAAAATCGA TATTCCTATTAGAAAAGACTTAATTGGAAATTCCAACAATCTGAGAAAGCATGTCTGCAACAACC GCCACAATCCTCTCTTACTATTAGAAGCAATTCTCGTGAATCGTTTTCCAATGCGAATAAAAAGT TGTCGGAGGAAACGCTGCCGTATATGCAACTACTAGCATTCAAAAAAGTTGTTGGTAAGTTATTG TAATAGTTGATGGAAAACTAAACAAGTTCACCTACTGCCTCCGCAACATTCTCCCCCTCGCTTCC CGGGAGGCGGATTACGGTATTATTGGCGTCCCCAATTCCAAAACA Found at i:13571047 original size:7 final size:7 Alignment explanation
Indices: 13571035--13571051 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 13571025 ACAAATCCGA 13571035 AAATTTG 1 AAATTTG 13571042 AAATTTG 1 AAATTTG 13571049 AAA 1 AAA 13571052 AAGTTTAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35 Consensus pattern (7 bp): AAATTTG Left flanking sequence: Indices 13570535 -- 13571034 TAGACCCAAAATCTAAACCAAAAATTAATAGAAAAAGCTATTGAGAATCGATTAAAAGAGTATTT GTGGGGTGAGATGTATATTGTGTATAACAAGAAAAAGACAAAAAAGTGTCCGTTGCTTACTCTCT ACACAACCGTGTAAATAGATCGATTCCGGACCGAATGGGGGACTAGAGAAAGTGATCGAAAAGAC AAACAAAGCTGCTTCAAAGTAGGTGCGACACCCCTTATATATGTGTAGGATTAAGTGACAAGAGT GGGGACACATCTGGATTTTTTAACCCTAGCACTCGGAATTTTTCGGTCTGATTGAGCTGACTGGA TTTAAAATTTTTCAATGAAAATGGTGGAAAAAAAACGTTTTAATTAAAAAAAAAATTTAATTGCA GGAATTTTTTGAAGAACATGTTTTTGAAAATATCGAAAACTGAAAAAGCATAATTTTTCAAGTTT CCAAGTAATTAAAAGTTTAGTTATACTTCGAACTAACAAATCCGA Right flanking sequence: Indices 13571052 -- 13571551 AAGTTTAAAAGTTTTGAAATGTTAGTATTTATTTTAAATTTCTAGTAAATTGTACATAAATGAAA ACCTGCAAAATCTGACAATGATAATGATGAAAATATGAAATTTCTAACAAAAAGTCTATTTCAAA ATTTCAAATAAACGTTAGCTAAAAAATATATTGCAACAATTTTTTTCAGAGGACCCTAAAAATCG ATATTCCTATTAGAAAAGACTTAATTGGAAATTCCAACAATCTGAGAAAGCATGTCTGCAACAAC CGCCACAATCCTCTCTTACTATTAGAAGCAATTCTCGTGAATCGTTTTCCAATGCGAATAAAAAG TTGTCGGAGGAAACGCTGCCGTATATGCAACTACTAGCATTCAAAAAAGTTGTTGGTAAGTTATT GTAATAGTTGATGGAAAACTAAACAAGTTCACCTACTGCCTCCGCAACATTCTCCCCCTCGCTTC CCGGGAGGCGGATTACGGTATTATTGGCGTCCCCAATTCCAAAAC Found at i:13571061 original size:8 final size:8 Alignment explanation
Indices: 13571050--13571065 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 13571040 TGAAATTTGA 13571050 AAAAGTTT 1 AAAAGTTT 13571058 AAAAGTTT 1 AAAAGTTT 13571066 TGAAATGTTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (8 bp): AAAAGTTT Left flanking sequence: Indices 13570550 -- 13571049 AACCAAAAATTAATAGAAAAAGCTATTGAGAATCGATTAAAAGAGTATTTGTGGGGTGAGATGTA TATTGTGTATAACAAGAAAAAGACAAAAAAGTGTCCGTTGCTTACTCTCTACACAACCGTGTAAA TAGATCGATTCCGGACCGAATGGGGGACTAGAGAAAGTGATCGAAAAGACAAACAAAGCTGCTTC AAAGTAGGTGCGACACCCCTTATATATGTGTAGGATTAAGTGACAAGAGTGGGGACACATCTGGA TTTTTTAACCCTAGCACTCGGAATTTTTCGGTCTGATTGAGCTGACTGGATTTAAAATTTTTCAA TGAAAATGGTGGAAAAAAAACGTTTTAATTAAAAAAAAAATTTAATTGCAGGAATTTTTTGAAGA ACATGTTTTTGAAAATATCGAAAACTGAAAAAGCATAATTTTTCAAGTTTCCAAGTAATTAAAAG TTTAGTTATACTTCGAACTAACAAATCCGAAAATTTGAAATTTGA Right flanking sequence: Indices 13571066 -- 13571565 TGAAATGTTAGTATTTATTTTAAATTTCTAGTAAATTGTACATAAATGAAAACCTGCAAAATCTG ACAATGATAATGATGAAAATATGAAATTTCTAACAAAAAGTCTATTTCAAAATTTCAAATAAACG TTAGCTAAAAAATATATTGCAACAATTTTTTTCAGAGGACCCTAAAAATCGATATTCCTATTAGA AAAGACTTAATTGGAAATTCCAACAATCTGAGAAAGCATGTCTGCAACAACCGCCACAATCCTCT CTTACTATTAGAAGCAATTCTCGTGAATCGTTTTCCAATGCGAATAAAAAGTTGTCGGAGGAAAC GCTGCCGTATATGCAACTACTAGCATTCAAAAAAGTTGTTGGTAAGTTATTGTAATAGTTGATGG AAAACTAAACAAGTTCACCTACTGCCTCCGCAACATTCTCCCCCTCGCTTCCCGGGAGGCGGATT ACGGTATTATTGGCGTCCCCAATTCCAAAACACCTCTCTATTCCA i:13571156 original size:8 final size:9 Alignment explanation
Indices: 13571134--13571156 Score: 32 Period size: 9 Copynumber: 2.7 Consensus size: 9 13571124 AAATCTGACA * 13571134 ATGATAATG 1 ATGAAAATG 13571143 ATGAAAAT- 1 ATGAAAATG 13571151 ATGAAA 1 ATGAAA 13571157 TTTCTAACAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 8 6 0.46 9 7 0.54 ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26 Consensus pattern (9 bp): ATGAAAATG Left flanking sequence: Indices 13570634 -- 13571133 AAGACAAAAAAGTGTCCGTTGCTTACTCTCTACACAACCGTGTAAATAGATCGATTCCGGACCGA ATGGGGGACTAGAGAAAGTGATCGAAAAGACAAACAAAGCTGCTTCAAAGTAGGTGCGACACCCC TTATATATGTGTAGGATTAAGTGACAAGAGTGGGGACACATCTGGATTTTTTAACCCTAGCACTC GGAATTTTTCGGTCTGATTGAGCTGACTGGATTTAAAATTTTTCAATGAAAATGGTGGAAAAAAA ACGTTTTAATTAAAAAAAAAATTTAATTGCAGGAATTTTTTGAAGAACATGTTTTTGAAAATATC GAAAACTGAAAAAGCATAATTTTTCAAGTTTCCAAGTAATTAAAAGTTTAGTTATACTTCGAACT AACAAATCCGAAAATTTGAAATTTGAAAAAGTTTAAAAGTTTTGAAATGTTAGTATTTATTTTAA ATTTCTAGTAAATTGTACATAAATGAAAACCTGCAAAATCTGACA Right flanking sequence: Indices 13571157 -- 13571656 TTTCTAACAAAAAGTCTATTTCAAAATTTCAAATAAACGTTAGCTAAAAAATATATTGCAACAAT TTTTTTCAGAGGACCCTAAAAATCGATATTCCTATTAGAAAAGACTTAATTGGAAATTCCAACAA TCTGAGAAAGCATGTCTGCAACAACCGCCACAATCCTCTCTTACTATTAGAAGCAATTCTCGTGA ATCGTTTTCCAATGCGAATAAAAAGTTGTCGGAGGAAACGCTGCCGTATATGCAACTACTAGCAT TCAAAAAAGTTGTTGGTAAGTTATTGTAATAGTTGATGGAAAACTAAACAAGTTCACCTACTGCC TCCGCAACATTCTCCCCCTCGCTTCCCGGGAGGCGGATTACGGTATTATTGGCGTCCCCAATTCC AAAACACCTCTCTATTCCACGTGTTGTCTCTGCTATTCACGATTTGCATTTTGCGACCGGCAATC GACCGGCCGATTATAACGCTTTGTAGAAATGAAAGCCAATTTTTT Found at i:13571187 original size:8 final size:8 Alignment explanation
Indices: 13571174--13571189 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 13571164 CAAAAAGTCT 13571174 ATTTCAAA 1 ATTTCAAA 13571182 ATTTCAAA 1 ATTTCAAA 13571190 TAAACGTTAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38 Consensus pattern (8 bp): ATTTCAAA Left flanking sequence: Indices 13570674 -- 13571173 TGTAAATAGATCGATTCCGGACCGAATGGGGGACTAGAGAAAGTGATCGAAAAGACAAACAAAGC TGCTTCAAAGTAGGTGCGACACCCCTTATATATGTGTAGGATTAAGTGACAAGAGTGGGGACACA TCTGGATTTTTTAACCCTAGCACTCGGAATTTTTCGGTCTGATTGAGCTGACTGGATTTAAAATT TTTCAATGAAAATGGTGGAAAAAAAACGTTTTAATTAAAAAAAAAATTTAATTGCAGGAATTTTT TGAAGAACATGTTTTTGAAAATATCGAAAACTGAAAAAGCATAATTTTTCAAGTTTCCAAGTAAT TAAAAGTTTAGTTATACTTCGAACTAACAAATCCGAAAATTTGAAATTTGAAAAAGTTTAAAAGT TTTGAAATGTTAGTATTTATTTTAAATTTCTAGTAAATTGTACATAAATGAAAACCTGCAAAATC TGACAATGATAATGATGAAAATATGAAATTTCTAACAAAAAGTCT Right flanking sequence: Indices 13571190 -- 13571689 TAAACGTTAGCTAAAAAATATATTGCAACAATTTTTTTCAGAGGACCCTAAAAATCGATATTCCT ATTAGAAAAGACTTAATTGGAAATTCCAACAATCTGAGAAAGCATGTCTGCAACAACCGCCACAA TCCTCTCTTACTATTAGAAGCAATTCTCGTGAATCGTTTTCCAATGCGAATAAAAAGTTGTCGGA GGAAACGCTGCCGTATATGCAACTACTAGCATTCAAAAAAGTTGTTGGTAAGTTATTGTAATAGT TGATGGAAAACTAAACAAGTTCACCTACTGCCTCCGCAACATTCTCCCCCTCGCTTCCCGGGAGG CGGATTACGGTATTATTGGCGTCCCCAATTCCAAAACACCTCTCTATTCCACGTGTTGTCTCTGC TATTCACGATTTGCATTTTGCGACCGGCAATCGACCGGCCGATTATAACGCTTTGTAGAAATGAA AGCCAATTTTTTATTAATACAGTTTAGGAAAAATTATTGAAAACT Found at i:13571973 original size:8 final size:8 Alignment explanation
Indices: 13571957--13571975 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 13571947 TCTTAAAACC 13571957 TTTGATGT 1 TTTGATGT * 13571965 TTTGTTGT 1 TTTGATGT 13571973 TTT 1 TTT 13571976 TCATTGTATT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.05, C:0.00, G:0.21, T:0.74 Consensus pattern (8 bp): TTTGATGT Left flanking sequence: Indices 13571457 -- 13571956 AAACTAAACAAGTTCACCTACTGCCTCCGCAACATTCTCCCCCTCGCTTCCCGGGAGGCGGATTA CGGTATTATTGGCGTCCCCAATTCCAAAACACCTCTCTATTCCACGTGTTGTCTCTGCTATTCAC GATTTGCATTTTGCGACCGGCAATCGACCGGCCGATTATAACGCTTTGTAGAAATGAAAGCCAAT TTTTTATTAATACAGTTTAGGAAAAATTATTGAAAACTCAGAATCTGGAAGGAAATTAAAGATAA TGTTTCAAATAGTTGAATTTAGCTTATCGAGAGCTTCACAATGAGTATAATTGTTACCTTTCTAG GTTTCGATAAATTTCAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATACATTTATCAGTT GCCAAACTACAAAAGCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGGATTTTTTCGGCG AACGGCGTTCGCGTTTTTTCGGAATTTTTTGGTATTCTTAAAACC Right flanking sequence: Indices 13571976 -- 13572475 TCATTGTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTGGTTTA AATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAAAGGAT CCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTTTGAGGA TTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTGTTTTTTTTT TTTTGGTTTTTTTGGTATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAA AAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTA TTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTT TGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATC Found at i:13572184 original size:8 final size:8 Alignment explanation
Indices: 13572171--13572187 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 13572161 TCTTTGAGGA 13572171 TTTTATGG 1 TTTTATGG 13572179 TTTTATGG 1 TTTTATGG 13572187 T 1 T 13572188 AGGGTGACGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.24, T:0.65 Consensus pattern (8 bp): TTTTATGG Left flanking sequence: Indices 13571671 -- 13572170 GGAAAAATTATTGAAAACTCAGAATCTGGAAGGAAATTAAAGATAATGTTTCAAATAGTTGAATT TAGCTTATCGAGAGCTTCACAATGAGTATAATTGTTACCTTTCTAGGTTTCGATAAATTTCAGTA AATTACCGATGTTGCCGAAATAGCTGATTCAATACATTTATCAGTTGCCAAACTACAAAAGCATA GATAAGATCCATGTCAGGGCTGTGCGGCATCCGGATTTTTTCGGCGAACGGCGTTCGCGTTTTTT CGGAATTTTTTGGTATTCTTAAAACCTTTGATGTTTTGTTGTTTTTCATTGTATTTTCTAAATCT AAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTGGTTTAAATTTTCAAGCAAAGATCAA TTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAAAGGATCCCAGAGGCAAGAATGTTTC AAAATAGATGTATACATGGACAGCCATAGACAACATCTTTGAGGA Right flanking sequence: Indices 13572188 -- 13572687 AGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTGTTTTTTTTTTTTTGGTTTTTTTGGTA TTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAACCAAAAAATCCA AAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAAC ATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAAT AACCCCATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTT TTCGAGAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTT TTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCT ACTATATGGCTAATAATTCAGTATGACTACAATATTTGTAGATTT Found at i:13572224 original size:8 final size:8 Alignment explanation
Indices: 13572211--13572257 Score: 57 Period size: 8 Copynumber: 5.9 Consensus size: 8 13572201 GGGCTGGGAA 13572211 TTTTTTGG 1 TTTTTTGG * 13572219 TTTTTTTG 1 TTTTTTGG * 13572227 TTTTTT-T 1 TTTTTTGG 13572234 TTTTTTGG 1 TTTTTTGG 13572242 TTTTTTTGG 1 -TTTTTTGG * 13572251 TATTTTG 1 TTTTTTG 13572258 ACGAAAAATA Statistics Matches: 33, Mismatches: 4, Indels: 4 0.80 0.10 0.10 Matches are distributed among these distances: 7 6 0.18 8 19 0.58 9 8 0.24 ACGTcount: A:0.02, C:0.00, G:0.17, T:0.81 Consensus pattern (8 bp): TTTTTTGG Left flanking sequence: Indices 13571711 -- 13572210 AGATAATGTTTCAAATAGTTGAATTTAGCTTATCGAGAGCTTCACAATGAGTATAATTGTTACCT TTCTAGGTTTCGATAAATTTCAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATACATTTA TCAGTTGCCAAACTACAAAAGCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGGATTTTT TCGGCGAACGGCGTTCGCGTTTTTTCGGAATTTTTTGGTATTCTTAAAACCTTTGATGTTTTGTT GTTTTTCATTGTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTG GTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAA AGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTTT GAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAA Right flanking sequence: Indices 13572258 -- 13572757 ACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAACCAAAAAATCCAAAAAA AAAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAACATGTA TTTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAATAACCC CATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGA GAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTTTTTTG GTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTACTAT ATGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGAAAA ACTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTCA Found at i:13572225 original size:9 final size:9 Alignment explanation
Indices: 13572211--13572256 Score: 57 Period size: 9 Copynumber: 5.6 Consensus size: 9 13572201 GGGCTGGGAA 13572211 TTTTTTGGT 1 TTTTTTGGT 13572220 TTTTTT-G- 1 TTTTTTGGT 13572227 TTTTTT--T 1 TTTTTTGGT 13572234 TTTTTTGGT 1 TTTTTTGGT 13572243 TTTTTTGGT 1 TTTTTTGGT * 13572252 ATTTT 1 TTTTT 13572257 GACGAAAAAT Statistics Matches: 33, Mismatches: 1, Indels: 6 0.82 0.03 0.15 Matches are distributed among these distances: 7 12 0.36 8 1 0.03 9 20 0.61 ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83 Consensus pattern (9 bp): TTTTTTGGT Left flanking sequence: Indices 13571711 -- 13572210 AGATAATGTTTCAAATAGTTGAATTTAGCTTATCGAGAGCTTCACAATGAGTATAATTGTTACCT TTCTAGGTTTCGATAAATTTCAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATACATTTA TCAGTTGCCAAACTACAAAAGCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGGATTTTT TCGGCGAACGGCGTTCGCGTTTTTTCGGAATTTTTTGGTATTCTTAAAACCTTTGATGTTTTGTT GTTTTTCATTGTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTG GTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAA AGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTTT GAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAA Right flanking sequence: Indices 13572257 -- 13572756 GACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAACCAAAAAATCCAAAAA AAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAACATGT ATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAATAACC CCATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCG AGAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTTTTTT GGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTACTA TATGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGAAA AACTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTC Found at i:13572284 original size:9 final size:9 Alignment explanation
Indices: 13572270--13572292 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 13572260 GAAAAATAGA 13572270 TTTTTTGGT 1 TTTTTTGGT 13572279 TTTTTTGGT 1 TTTTTTGGT * 13572288 ATTTT 1 TTTTT 13572293 GGGACCAAAA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.04, C:0.00, G:0.17, T:0.78 Consensus pattern (9 bp): TTTTTTGGT Left flanking sequence: Indices 13571770 -- 13572269 TTACCTTTCTAGGTTTCGATAAATTTCAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATA CATTTATCAGTTGCCAAACTACAAAAGCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGG ATTTTTTCGGCGAACGGCGTTCGCGTTTTTTCGGAATTTTTTGGTATTCTTAAAACCTTTGATGT TTTGTTGTTTTTCATTGTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGT GTCTTGGTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGT CAAAAAAGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAAC ATCTTTGAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTT TGTTTTTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAAAATAGA Right flanking sequence: Indices 13572293 -- 13572792 GGGACCAAAAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACT ATTATGTATTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTG ATACATTTTGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAATTTTTTG GTTTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGT TTTTCAAAAACTTCAATTTTTTGTTTTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACG ATGTGTCGACTGAAAGAATATCTCTACTATATGGCTAATAATTCAGTATGACTACAATATTTGTA GATTTATGTTTCAACGGATGAATGTGAAAAACTTAATATATTCGATTAAAATTAAAAAAAAAACA ACATTTTTCACAAATGCCGAAAAATACCGAAAAATGCCGAACATA Found at i:13572293 original size:8 final size:9 Alignment explanation
Indices: 13572272--13572294 Score: 32 Period size: 8 Copynumber: 2.7 Consensus size: 9 13572262 AAAATAGATT * 13572272 TTTTGGTTT 1 TTTTGGTTA 13572281 TTTTGG-TA 1 TTTTGGTTA 13572289 TTTTGG 1 TTTTGG 13572295 GACCAAAAAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 8 7 0.54 9 6 0.46 ACGTcount: A:0.04, C:0.00, G:0.26, T:0.70 Consensus pattern (9 bp): TTTTGGTTA Left flanking sequence: Indices 13571772 -- 13572271 ACCTTTCTAGGTTTCGATAAATTTCAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATACA TTTATCAGTTGCCAAACTACAAAAGCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGGAT TTTTTCGGCGAACGGCGTTCGCGTTTTTTCGGAATTTTTTGGTATTCTTAAAACCTTTGATGTTT TGTTGTTTTTCATTGTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGT CTTGGTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCA AAAAAGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACAT CTTTGAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTG TTTTTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAAAATAGATT Right flanking sequence: Indices 13572295 -- 13572794 GACCAAAAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTAT TATGTATTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGAT ACATTTTGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGT TTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTT TTCAAAAACTTCAATTTTTTGTTTTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGAT GTGTCGACTGAAAGAATATCTCTACTATATGGCTAATAATTCAGTATGACTACAATATTTGTAGA TTTATGTTTCAACGGATGAATGTGAAAAACTTAATATATTCGATTAAAATTAAAAAAAAAACAAC ATTTTTCACAAATGCCGAAAAATACCGAAAAATGCCGAACATACT Found at i:13572308 original size:9 final size:9 Alignment explanation
Indices: 13572296--13572323 Score: 49 Period size: 9 Copynumber: 3.1 Consensus size: 9 13572286 GTATTTTGGG 13572296 ACCAAAAAA 1 ACCAAAAAA 13572305 ACCAAAAAA 1 ACCAAAAAA * 13572314 TCCAAAAAA 1 ACCAAAAAA 13572323 A 1 A 13572324 AAATGTTTAC Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.75, C:0.21, G:0.00, T:0.04 Consensus pattern (9 bp): ACCAAAAAA Left flanking sequence: Indices 13571796 -- 13572295 CAGTAAATTACCGATGTTGCCGAAATAGCTGATTCAATACATTTATCAGTTGCCAAACTACAAAA GCATAGATAAGATCCATGTCAGGGCTGTGCGGCATCCGGATTTTTTCGGCGAACGGCGTTCGCGT TTTTTCGGAATTTTTTGGTATTCTTAAAACCTTTGATGTTTTGTTGTTTTTCATTGTATTTTCTA AATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTGGTTTAAATTTTCAAGCAAAG ATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAAAGGATCCCAGAGGCAAGAAT GTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTTTGAGGATTTTATGGTTTTATG GTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTGTTTTTTTTTTTTTGGTTTTTTTGG TATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGG Right flanking sequence: Indices 13572324 -- 13572823 AAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAACATGTAT TTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAATAACCCC ATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGAG AATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTTTTTTGG TCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTACTATA TGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGAAAAA CTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTCACAAATGCCGAAAAATACCGAA AAATGCCGAACATACTTCGGCACTGACCGATCTTTCGACCAACTT Found at i:13572496 original size:10 final size:10 Alignment explanation
Indices: 13572481--13572514 Score: 59 Period size: 10 Copynumber: 3.3 Consensus size: 10 13572471 GCATCAAAAA 13572481 TTTTTTGGTTT 1 TTTTTTGG-TT 13572492 TTTTTTGGTT 1 TTTTTTGGTT 13572502 TTTTTTGGTT 1 TTTTTTGGTT 13572512 TTT 1 TTT 13572515 CGAGAATTTC Statistics Matches: 23, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 10 15 0.65 11 8 0.35 ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82 Consensus pattern (10 bp): TTTTTTGGTT Left flanking sequence: Indices 13571981 -- 13572480 GTATTTTCTAAATCTAAATAATTCAATTCCAAAGTTTGATAAAGAGTGTGTCTTGGTTTAAATTT TCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAAAAGGATCCCAG AGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTTTGAGGATTTTA TGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTGTTTTTTTTTTTTTG GTTTTTTTGGTATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAA CCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAA ATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAA CATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAA Right flanking sequence: Indices 13572515 -- 13573014 CGAGAATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTTTT TTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTAC TATATGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGA AAAACTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTCACAAATGCCGAAAAATAC CGAAAAATGCCGAACATACTTCGGCACTGACCGATCTTTCGACCAACTTTTTTTACGGCGAACGG AATTAGCCGTTTGCATAAAACCCCCATCGAAACAAAAAACAATTGTCATTGTTGCCAAACTAGAC AAAAAAAGACAAAAAATATTTCAGATGCCGAAGTAGGGGAAATTTTCAGGATCGAAACGTTGCTT GCATGCCAAAATTGCCGAAGTTGCGGAACCCCAGCTTTTCGGCAA Found at i:13572538 original size:7 final size:7 Alignment explanation
Indices: 13572528--13572547 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 13572518 GAATTTCAAA 13572528 TTTTTTG 1 TTTTTTG 13572535 TTTTTTG 1 TTTTTTG * 13572542 GTTTTT 1 TTTTTT 13572548 TTGGTTTTTC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (7 bp): TTTTTTG Left flanking sequence: Indices 13572028 -- 13572527 GTGTCTTGGTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATA GTCAAAAAAGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACA ACATCTTTGAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTT TTTGTTTTTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGT ATTTTGGGACCAAAAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCG AGACTATTATGTATTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTG TTTTGATACATTTTGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAATT TTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTTCAAA Right flanking sequence: Indices 13572548 -- 13573047 TTGGTTTTTCAAAAACTTCAATTTTTTGTTTTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGG TTACGATGTGTCGACTGAAAGAATATCTCTACTATATGGCTAATAATTCAGTATGACTACAATAT TTGTAGATTTATGTTTCAACGGATGAATGTGAAAAACTTAATATATTCGATTAAAATTAAAAAAA AAACAACATTTTTCACAAATGCCGAAAAATACCGAAAAATGCCGAACATACTTCGGCACTGACCG ATCTTTCGACCAACTTTTTTTACGGCGAACGGAATTAGCCGTTTGCATAAAACCCCCATCGAAAC AAAAAACAATTGTCATTGTTGCCAAACTAGACAAAAAAAGACAAAAAATATTTCAGATGCCGAAG TAGGGGAAATTTTCAGGATCGAAACGTTGCTTGCATGCCAAAATTGCCGAAGTTGCGGAACCCCA GCTTTTCGGCAACATGCTAATTTTTCGCTTTTTTTCGTGCGAAAT Found at i:13572540 original size:9 final size:9 Alignment explanation
Indices: 13572535--13572556 Score: 44 Period size: 9 Copynumber: 2.4 Consensus size: 9 13572525 AAATTTTTTG 13572535 TTTTTTGGT 1 TTTTTTGGT 13572544 TTTTTTGGT 1 TTTTTTGGT 13572553 TTTT 1 TTTT 13572557 CAAAAACTTC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82 Consensus pattern (9 bp): TTTTTTGGT Left flanking sequence: Indices 13572035 -- 13572534 GGTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATAGTCAAAA AAGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACAACATCTT TGAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTTTTTGTTT TTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGG GACCAAAAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCGAGACTAT TATGTATTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTGTTTTGAT ACATTTTGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGT TTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTTCAAATTTTTTG Right flanking sequence: Indices 13572557 -- 13573056 CAAAAACTTCAATTTTTTGTTTTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGT GTCGACTGAAAGAATATCTCTACTATATGGCTAATAATTCAGTATGACTACAATATTTGTAGATT TATGTTTCAACGGATGAATGTGAAAAACTTAATATATTCGATTAAAATTAAAAAAAAAACAACAT TTTTCACAAATGCCGAAAAATACCGAAAAATGCCGAACATACTTCGGCACTGACCGATCTTTCGA CCAACTTTTTTTACGGCGAACGGAATTAGCCGTTTGCATAAAACCCCCATCGAAACAAAAAACAA TTGTCATTGTTGCCAAACTAGACAAAAAAAGACAAAAAATATTTCAGATGCCGAAGTAGGGGAAA TTTTCAGGATCGAAACGTTGCTTGCATGCCAAAATTGCCGAAGTTGCGGAACCCCAGCTTTTCGG CAACATGCTAATTTTTCGCTTTTTTTCGTGCGAAATTGTGTATTT Found at i:13572545 original size:8 final size:8 Alignment explanation
Indices: 13572528--13572556 Score: 42 Period size: 8 Copynumber: 3.5 Consensus size: 8 13572518 GAATTTCAAA * 13572528 TTTTTTGT 1 TTTTTGGT 13572536 TTTTTGGTT 1 TTTTTGG-T 13572545 TTTTTGGT 1 TTTTTGGT 13572553 TTTT 1 TTTT 13572557 CAAAAACTTC Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 8 11 0.58 9 8 0.42 ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83 Consensus pattern (8 bp): TTTTTGGT Left flanking sequence: Indices 13572028 -- 13572527 GTGTCTTGGTTTAAATTTTCAAGCAAAGATCAATTTCATATTTAAACGACCAGACTGTTGGTATA GTCAAAAAAGGATCCCAGAGGCAAGAATGTTTCAAAATAGATGTATACATGGACAGCCATAGACA ACATCTTTGAGGATTTTATGGTTTTATGGTAGGGTGACGATCAGGGCTGGGAATTTTTTGGTTTT TTTGTTTTTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAAAATAGATTTTTTGGTTTTTTTGGT ATTTTGGGACCAAAAAAACCAAAAAATCCAAAAAAAAAATGTTTACCGTGTATAGTCTCGACTCG AGACTATTATGTATTGAAATACATTAAAACATGTATTTTAACACAGTTGTGACGTCATAAATGTG TTTTGATACATTTTGCAACATTACTTGAATAACCCCATTAAAAATCAACTTAAGCATCAAAAATT TTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTTCAAA Right flanking sequence: Indices 13572557 -- 13573056 CAAAAACTTCAATTTTTTGTTTTTTGGTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGT GTCGACTGAAAGAATATCTCTACTATATGGCTAATAATTCAGTATGACTACAATATTTGTAGATT TATGTTTCAACGGATGAATGTGAAAAACTTAATATATTCGATTAAAATTAAAAAAAAAACAACAT TTTTCACAAATGCCGAAAAATACCGAAAAATGCCGAACATACTTCGGCACTGACCGATCTTTCGA CCAACTTTTTTTACGGCGAACGGAATTAGCCGTTTGCATAAAACCCCCATCGAAACAAAAAACAA TTGTCATTGTTGCCAAACTAGACAAAAAAAGACAAAAAATATTTCAGATGCCGAAGTAGGGGAAA TTTTCAGGATCGAAACGTTGCTTGCATGCCAAAATTGCCGAAGTTGCGGAACCCCAGCTTTTCGG CAACATGCTAATTTTTCGCTTTTTTTCGTGCGAAATTGTGTATTT Found at i:13572581 original size:7 final size:7 Alignment explanation
Indices: 13572569--13572582 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 13572559 AAAACTTCAA 13572569 TTTTTTG 1 TTTTTTG 13572576 TTTTTTG 1 TTTTTTG 13572583 GTCAAACATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (7 bp): TTTTTTG Left flanking sequence: Indices 13572069 -- 13572568 TTAAACGACCAGACTGTTGGTATAGTCAAAAAAGGATCCCAGAGGCAAGAATGTTTCAAAATAGA TGTATACATGGACAGCCATAGACAACATCTTTGAGGATTTTATGGTTTTATGGTAGGGTGACGAT CAGGGCTGGGAATTTTTTGGTTTTTTTGTTTTTTTTTTTTTGGTTTTTTTGGTATTTTGACGAAA AATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAACCAAAAAATCCAAAAAAAAAATG TTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAACATGTATTTTAA CACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAATAACCCCATTAA AAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGAGAATTT CAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAA Right flanking sequence: Indices 13572583 -- 13573082 GTCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTACTAT ATGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGAAAA ACTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTCACAAATGCCGAAAAATACCGA AAAATGCCGAACATACTTCGGCACTGACCGATCTTTCGACCAACTTTTTTTACGGCGAACGGAAT TAGCCGTTTGCATAAAACCCCCATCGAAACAAAAAACAATTGTCATTGTTGCCAAACTAGACAAA AAAAGACAAAAAATATTTCAGATGCCGAAGTAGGGGAAATTTTCAGGATCGAAACGTTGCTTGCA TGCCAAAATTGCCGAAGTTGCGGAACCCCAGCTTTTCGGCAACATGCTAATTTTTCGCTTTTTTT CGTGCGAAATTGTGTATTTTGTAAACTTTTCGGCAATAAATTACA Found at i:13572777 original size:10 final size:10 Alignment explanation
Indices: 13572759--13572788 Score: 53 Period size: 10 Copynumber: 3.0 Consensus size: 10 13572749 CATTTTTCAC 13572759 AAATGCCGAA 1 AAATGCCGAA * 13572769 AAATACCGAA 1 AAATGCCGAA 13572779 AAATGCCGAA 1 AAATGCCGAA 13572789 CATACTTCGG Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 18 1.00 ACGTcount: A:0.53, C:0.20, G:0.17, T:0.10 Consensus pattern (10 bp): AAATGCCGAA Left flanking sequence: Indices 13572259 -- 13572758 CGAAAAATAGATTTTTTGGTTTTTTTGGTATTTTGGGACCAAAAAAACCAAAAAATCCAAAAAAA AAATGTTTACCGTGTATAGTCTCGACTCGAGACTATTATGTATTGAAATACATTAAAACATGTAT TTTAACACAGTTGTGACGTCATAAATGTGTTTTGATACATTTTGCAACATTACTTGAATAACCCC ATTAAAAATCAACTTAAGCATCAAAAATTTTTTGGTTTTTTTTTGGTTTTTTTTGGTTTTTCGAG AATTTCAAATTTTTTGTTTTTTGGTTTTTTTGGTTTTTCAAAAACTTCAATTTTTTGTTTTTTGG TCAAACATTTTTTTTGGTCCCAGCCCTGGTTACGATGTGTCGACTGAAAGAATATCTCTACTATA TGGCTAATAATTCAGTATGACTACAATATTTGTAGATTTATGTTTCAACGGATGAATGTGAAAAA CTTAATATATTCGATTAAAATTAAAAAAAAAACAACATTTTTCAC Right flanking sequence: Indices 13572789 -- 13573288 CATACTTCGGCACTGACCGATCTTTCGACCAACTTTTTTTACGGCGAACGGAATTAGCCGTTTGC ATAAAACCCCCATCGAAACAAAAAACAATTGTCATTGTTGCCAAACTAGACAAAAAAAGACAAAA AATATTTCAGATGCCGAAGTAGGGGAAATTTTCAGGATCGAAACGTTGCTTGCATGCCAAAATTG CCGAAGTTGCGGAACCCCAGCTTTTCGGCAACATGCTAATTTTTCGCTTTTTTTCGTGCGAAATT GTGTATTTTGTAAACTTTTCGGCAATAAATTACATAAAATCTCTCCAAGTTAGGTCGATATCATT CACGTTTTTGTTGTAATGTATGTATTATATCAATTTTGTTCTTTAAAGAGAAGACGAATGAAAGA GGCAACTTTTTGATGAAAACGGGTTTTCGGTGCGATTTTTCGTAGACAAAAAGTTTTTCTGTGAA ACTAAGAATAAAACTGACAATTTTGAAAAATTTTGTGATGTACTT Found at