TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:15880635 original size:9 final size:9 Alignment explanation
Indices: 15880623--15880650 Score: 42 Period size: 9 Copynumber: 3.2 Consensus size: 9 15880613 AATCGAATAT 15880623 TTTTTCAAA 1 TTTTTCAAA 15880632 -TTTTCAAA 1 TTTTTCAAA * 15880640 TTTTCCAAA 1 TTTTTCAAA 15880649 TT 1 TT 15880651 CTCAAAAATC Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 8 8 0.47 9 9 0.53 ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54 Consensus pattern (9 bp): TTTTTCAAA Left flanking sequence: Indices 15880123 -- 15880622 TTCAGTGTGTTTTTATATTTGGCAGTAAATATAGCTTCTTCAATTCTTGGGTCATTAAACCTAAA ATTTATTCAAAAAAACGTACCGGTACAGCTTTTGTACAGAAAGTAGACAGACATGTAGGCAGGCA AACATACCTGCCTACCATGCCTACTAGAACATACTTTCAGTGTAAAAGGCACCCTTATCGATCAA ATGATTGAGATGATCGATGAATATTCTGCGAATTTGGAACAAATCGTTGCGGAAAGAACAAGAGA ATTGGAACAAGATATGTCTGTTACAGAGAACTTATTGTATCAGCTTCTGCCAAAGTGAGCTTTTT TTTGAAAATTTTGAAATTCAAGAAAATTTGATACGTTGGAAAAAACGAAACTATTTAAAGTTTTT GTAAACTTTAACAAATTCGAAATTTAAAAAAAACATTTGCTGTTTCAAAAATTTATTAATTTACA TTAATTCAGAGTTGCAAATTTTGGTCGATCGCTAAAATCGAATAT Right flanking sequence: Indices 15880651 -- 15881150 CTCAAAAATCTAAATAAAAATGCAATTTTAGAAGTGTTGCCGACTCAATCCGTAGTGGTAAGACA GTTGTGCCAGAACAACATTCGTCTGTCACCCTGTTAGTAGTGGATGTCTGTCAGTTTACAAAGTT CTGTGAGGCTTTTATTCCGGTTCATGTGAGTTTTAGAGAGCTTATGCTACAAACTGATTTTGACT ATAAAACAGCAAAAATTATAATTTTGTGAAACCGTAATATTTTTCACAAAACAAAAAGTTTGGAA TAGCCGTTTTTCAAAAGTAAATTAGTTTTTTTTTAGTTTTCTCAAACTTTCCTTATTTGTTCTAA TTCTAAATAAGAATAAAAAATAAATTTTAAACATCGGCAGTCTTTTCAGCAAACAATTGGAAACT TCGTTAAATATGTGACAATTTCTTGAAAAGTTTACTGTTTCATAAAATTCATATGAACAATTATT TTAAACTTGAATTCAGTTCTATGGTTTCATTCAGTGCTATCAAAA Found at i:15880637 original size:8 final size:8 Alignment explanation
Indices: 15880624--15880656 Score: 50 Period size: 8 Copynumber: 4.0 Consensus size: 8 15880614 ATCGAATATT 15880624 TTTTCAAA 1 TTTTCAAA 15880632 TTTTCAAA 1 TTTTCAAA 15880640 TTTTCCAAA 1 TTTT-CAAA * 15880649 TTCTCAAA 1 TTTTCAAA 15880657 AATCTAAATA Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 8 16 0.70 9 7 0.30 ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45 Consensus pattern (8 bp): TTTTCAAA Left flanking sequence: Indices 15880124 -- 15880623 TCAGTGTGTTTTTATATTTGGCAGTAAATATAGCTTCTTCAATTCTTGGGTCATTAAACCTAAAA TTTATTCAAAAAAACGTACCGGTACAGCTTTTGTACAGAAAGTAGACAGACATGTAGGCAGGCAA ACATACCTGCCTACCATGCCTACTAGAACATACTTTCAGTGTAAAAGGCACCCTTATCGATCAAA TGATTGAGATGATCGATGAATATTCTGCGAATTTGGAACAAATCGTTGCGGAAAGAACAAGAGAA TTGGAACAAGATATGTCTGTTACAGAGAACTTATTGTATCAGCTTCTGCCAAAGTGAGCTTTTTT TTGAAAATTTTGAAATTCAAGAAAATTTGATACGTTGGAAAAAACGAAACTATTTAAAGTTTTTG TAAACTTTAACAAATTCGAAATTTAAAAAAAACATTTGCTGTTTCAAAAATTTATTAATTTACAT TAATTCAGAGTTGCAAATTTTGGTCGATCGCTAAAATCGAATATT Right flanking sequence: Indices 15880657 -- 15881156 AATCTAAATAAAAATGCAATTTTAGAAGTGTTGCCGACTCAATCCGTAGTGGTAAGACAGTTGTG CCAGAACAACATTCGTCTGTCACCCTGTTAGTAGTGGATGTCTGTCAGTTTACAAAGTTCTGTGA GGCTTTTATTCCGGTTCATGTGAGTTTTAGAGAGCTTATGCTACAAACTGATTTTGACTATAAAA CAGCAAAAATTATAATTTTGTGAAACCGTAATATTTTTCACAAAACAAAAAGTTTGGAATAGCCG TTTTTCAAAAGTAAATTAGTTTTTTTTTAGTTTTCTCAAACTTTCCTTATTTGTTCTAATTCTAA ATAAGAATAAAAAATAAATTTTAAACATCGGCAGTCTTTTCAGCAAACAATTGGAAACTTCGTTA AATATGTGACAATTTCTTGAAAAGTTTACTGTTTCATAAAATTCATATGAACAATTATTTTAAAC TTGAATTCAGTTCTATGGTTTCATTCAGTGCTATCAAAAACTAGT Found at i:15881494 original size:8 final size:8 Alignment explanation
Indices: 15881477--15881495 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 15881467 TTCCGCCCAA * 15881477 AAATCTAT 1 AAACCTAT 15881485 AAACCTAT 1 AAACCTAT 15881493 AAA 1 AAA 15881496 AAAAGTTACA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26 Consensus pattern (8 bp): AAACCTAT Left flanking sequence: Indices 15880977 -- 15881476 TCTAAATAAGAATAAAAAATAAATTTTAAACATCGGCAGTCTTTTCAGCAAACAATTGGAAACTT CGTTAAATATGTGACAATTTCTTGAAAAGTTTACTGTTTCATAAAATTCATATGAACAATTATTT TAAACTTGAATTCAGTTCTATGGTTTCATTCAGTGCTATCAAAAACTAGTTTGACAATCTGTGTA ACACTTGAAATTAATTTTTTCAATATTTCAGATTCTAGAAACTCTACAAGAACTCTACTCCTCCT TCGACAACATTGTACAGAAAAATAAGGCGTTTAAAGTGGAAAACGTGGGAGATGCCTACCTGATT TGCAGTGGAATACCTGAAATGAGTGGATTTCGTCATTTAAGAGAAATTTGCAAAATTTCGCTGAA ATTGCAAGCGGTGAGATTTTGTTCAGATTTTTTATAACTTTTATAAAGTTTTAGACAAAATAGGC ATTCTATTTAAAGTTTACCTATTTAAACTTCAAATTTCCGCCCAA Right flanking sequence: Indices 15881496 -- 15881995 AAAAGTTACAGTTCATGAAAACGTTCAAAGTCCGTCATAGACCATCTCACACACTACAAATAAAA ATGGGAATTACCAGTGGAGCAGTTGCAGCTGGAATACTGGGAAGTACGGCTCCAAGGTTAGTGTT GTAACAGATTAATGAGTTTCAGGTGACAGCAAATGCATCAGTACGAAAAATAAACACTTTTAACA TAGAAAAACTGAAACTGGAAAAAAATTTTTAAAAAATGCTGTTTCAAATTTTTGTCAAATGTTTT TATTTTTAAATCTGGGTATTAATTTTTTCATTTGCAGATTTTGTATATTCGGTGATACTGTGAAT ATGGCGTGTCGTATGGCAAGTACTGGAAATCCTGGAAGTATTCAATTAAGTGAATTGACTGCAAA TACGTTGATGGAGAAGTTTCCATCGTTTATGTTGGAGGAGAGAGGCATGATTGATGTGAAGGTAA GTTTTTTTTAAGGAATAGGCACGCCTACCTACCTACCGCATGCCT Found at i:15882189 original size:7 final size:7 Alignment explanation
Indices: 15882179--15882192 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 15882169 TACCCCATAC 15882179 ATTTTTT 1 ATTTTTT 15882186 ATTTTTT 1 ATTTTTT 15882193 CAGGGAAAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): ATTTTTT Left flanking sequence: Indices 15881679 -- 15882178 ACACTTTTAACATAGAAAAACTGAAACTGGAAAAAAATTTTTAAAAAATGCTGTTTCAAATTTTT GTCAAATGTTTTTATTTTTAAATCTGGGTATTAATTTTTTCATTTGCAGATTTTGTATATTCGGT GATACTGTGAATATGGCGTGTCGTATGGCAAGTACTGGAAATCCTGGAAGTATTCAATTAAGTGA ATTGACTGCAAATACGTTGATGGAGAAGTTTCCATCGTTTATGTTGGAGGAGAGAGGCATGATTG ATGTGAAGGTAAGTTTTTTTTAAGGAATAGGCACGCCTACCTACCTACCGCATGCCTGCCTGTTT TTTATTGAAAAGATTGAATAACGGAATTTCCGACGATTCGAAGAAAGTTGTATAACAAAATTCCA AAAAAAAGTTATACTGTTTGAAAGACTTGATATAAAAAGTTCTATATTTGCTTCATCAGTGCTAT GGCTATGCCCACATTTTCTATACCACATTTTCTTATACCCCATAC Right flanking sequence: Indices 15882193 -- 15882692 CAGGGAAAAGGCGCTTGCTTAACCTTCTGGTTAACTGGAGAAAAGGACATAATGAGACGTCAATC TTCTCGTTCCAGCTGCATAAGTCAGATTAAATTCGAGTTGGATGAAGCTGACAATTCGAAGAAAA TGTTTCTAAATGTTTAATTTAATTTTTTTTCTGTTTCTGTGCTAAAGTAATTTGAAGGAACTTCT ATAAAAATAATACACATTTATTTAGAACAAGAGCTTGAGAATCGACTATTTATGATAAAACTCAC GAGATTCATGAACAATATGAAATAGTATTTTCAAGCGTCCGACATCTACCGGGCTTCAGTAACAG AAAAAATATTGACAGAAAGTTTCCAATGTTTCATGATGTTAATAATTTTAGTGTCATTTTAGTGC CATATTGTACTGATTTAAATGAAGTTAACCAATATTTGATACTCAAAAGCTATAAATCTGTGACA TTTTTCATGGAATCTGTTGTTTTGTAAGAAAAAATACAATTTTCC Found at i:15882909 original size:7 final size:7 Alignment explanation
Indices: 15882897--15882913 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 15882887 AAGAAAAAAC 15882897 AATGTGA 1 AATGTGA * 15882904 AATGTGG 1 AATGTGA 15882911 AAT 1 AAT 15882914 AATCAAGAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): AATGTGA Left flanking sequence: Indices 15882397 -- 15882896 ATACACATTTATTTAGAACAAGAGCTTGAGAATCGACTATTTATGATAAAACTCACGAGATTCAT GAACAATATGAAATAGTATTTTCAAGCGTCCGACATCTACCGGGCTTCAGTAACAGAAAAAATAT TGACAGAAAGTTTCCAATGTTTCATGATGTTAATAATTTTAGTGTCATTTTAGTGCCATATTGTA CTGATTTAAATGAAGTTAACCAATATTTGATACTCAAAAGCTATAAATCTGTGACATTTTTCATG GAATCTGTTGTTTTGTAAGAAAAAATACAATTTTCCACTTTTATTTTCTTATTTGTTTTGATGGG GATTGAAAGAAAACTGGGAAACGAATGGAGAGGGAGTATTTTACTGAAATTCATCGACTTTAAAA AGTCATTTTACGAAATTGATTTTTTTTCCTGTTTCACATTCTTGTTATATTTCATCAAGCAAGTC ATTTGCAATATGGAATCGCACGGTGTAGATATTTCAAGAAAAAAC Right flanking sequence: Indices 15882914 -- 15883413 AATCAAGAAAAGTTGTAATTTTTTCGAAATGTTGGGTTAGGTTTTCAATTTTTTACGGATATTAA CAATATATGCTATTAAATTTAATTTTTATCGTGCGATTTGATTTTTTTTAATCTCGAAATTAATG ACGAAAGTTTCGGGAAAAAACATACAATCTATTATATTAACTAGGATTTCCAGTAACAAAAAATG GGGCTCTGTTTTACACTGTTTACTTAAAGTTCTATATTTTCTGAACTTTACTGACAGTGAGTCCA TTGCAATTAAAAATTACTACAGTAATTTGATTCATTTTCTTAAAATTTTCATTTTTCAAGTGTAC ATCAAGTGTTACATTTTCTGAGCCTTGTGCCCGGTAATTGTATTATTCATTTTTGAGAAAGCGTA TAAAACTCACATTAACAGATTAACTAGTTCATTATTTTTCTGTTCCACCGGAAGCAGTAAAAAAA TTCAGAAAAAATGAATGTAGTTTTAAAAAATTTGTTGACTTCAGC Found at i:15883884 original size:8 final size:8 Alignment explanation
Indices: 15883871--15883886 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15883861 CAATACGGTT 15883871 TTCGAAAA 1 TTCGAAAA 15883879 TTCGAAAA 1 TTCGAAAA 15883887 AAATTTCAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25 Consensus pattern (8 bp): TTCGAAAA Left flanking sequence: Indices 15883371 -- 15883870 CAGAAAAAATGAATGTAGTTTTAAAAAATTTGTTGACTTCAGCCATACATCAGTATCATCACTAG TCTAGTTTCCGGTAACAACTGAAAGTTTATTTGAATTTTTATCATTTTTCGTTTTCAAAGCGTTC AACTTACTCATAATTTCAAAAGAATCTCAACATTTTGATTTTATAATTTTGTTGATAAGATCAAA TAGTCTTTGGTTGACCTGAGCGTAGGTGGAAGAGTGAGAAAACAAATAATCAGTCATTTATTAAA TAATCATTGAAAAAAGGGAAGAAATATGGAATTGAGGTTCCAAAAAAAAATGACGAAAAGTTGCC AAAAAAGTGCCTTAAAATTACCAAAAAATTGCCGAAAATCGCTTAAAAGTTTAAAAAAATTGATG AAAAAAGTCTAAAAAGTGCCGAAAATATTACCAGAACTGCTTCCCAAACGGGAACTTTATCTTAT CTCATCATGCTCTTTCTCATAAATCCCTCGCAAAACAATACGGTT Right flanking sequence: Indices 15883887 -- 15884386 AAATTTCAATTTTTTTTCTGTTTCACATTTACTAGATGTGTTTGAAAAAATAAAAAATCACTCGC TCCTTCAAACGTGTCCATTACAAAATCCAAAACTACATTGTCTGAACAAGCAGTTTCCATGAAAT AACTCAAATTTACATGTCATTGTCCAGGCCGTCTCGGAGCACAGACAGAATATTTAATAAATTGA TAACAAATAATCCAAATGACGATATTTTTCCACGGGGGGCGGAGGTTATTACTATAAAGTAGGTC AAAATGTTCGTGAAAGAGCAAGTCATTCGAGAGAAGAATGATTCTTTGGTTTTCTCTAGTGTTTG TGCTCTTTTTCAAAGCTTCCGATGGAAAAGCAGTGGAGCAAGTGCACCTGAGCCTCAGTGGAAAC CCAAATGAGATGGTCGTGACGTGGCTGACACAGAATCCGCGTGAGTTATTTTAATTAGAAAACAG TTTTGAATTGCAAAAGTAATAAACATTTAAAAAAAGCGCCATTAT Found at i:15883943 original size:7 final size:7 Alignment explanation
Indices: 15883931--15883944 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 15883921 GATGTGTTTG 15883931 AAAAAAT 1 AAAAAAT 15883938 AAAAAAT 1 AAAAAAT 15883945 CACTCGCTCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAAAAT Left flanking sequence: Indices 15883431 -- 15883930 ACTAGTCTAGTTTCCGGTAACAACTGAAAGTTTATTTGAATTTTTATCATTTTTCGTTTTCAAAG CGTTCAACTTACTCATAATTTCAAAAGAATCTCAACATTTTGATTTTATAATTTTGTTGATAAGA TCAAATAGTCTTTGGTTGACCTGAGCGTAGGTGGAAGAGTGAGAAAACAAATAATCAGTCATTTA TTAAATAATCATTGAAAAAAGGGAAGAAATATGGAATTGAGGTTCCAAAAAAAAATGACGAAAAG TTGCCAAAAAAGTGCCTTAAAATTACCAAAAAATTGCCGAAAATCGCTTAAAAGTTTAAAAAAAT TGATGAAAAAAGTCTAAAAAGTGCCGAAAATATTACCAGAACTGCTTCCCAAACGGGAACTTTAT CTTATCTCATCATGCTCTTTCTCATAAATCCCTCGCAAAACAATACGGTTTTCGAAAATTCGAAA AAAATTTCAATTTTTTTTCTGTTTCACATTTACTAGATGTGTTTG Right flanking sequence: Indices 15883945 -- 15884444 CACTCGCTCCTTCAAACGTGTCCATTACAAAATCCAAAACTACATTGTCTGAACAAGCAGTTTCC ATGAAATAACTCAAATTTACATGTCATTGTCCAGGCCGTCTCGGAGCACAGACAGAATATTTAAT AAATTGATAACAAATAATCCAAATGACGATATTTTTCCACGGGGGGCGGAGGTTATTACTATAAA GTAGGTCAAAATGTTCGTGAAAGAGCAAGTCATTCGAGAGAAGAATGATTCTTTGGTTTTCTCTA GTGTTTGTGCTCTTTTTCAAAGCTTCCGATGGAAAAGCAGTGGAGCAAGTGCACCTGAGCCTCAG TGGAAACCCAAATGAGATGGTCGTGACGTGGCTGACACAGAATCCGCGTGAGTTATTTTAATTAG AAAACAGTTTTGAATTGCAAAAGTAATAAACATTTAAAAAAAGCGCCATTATCAAAATGTAGTGA AACAATATTTTCAAAATTTTGAAAATATTTCATGTTTCAAAGTTC Found at i:15884424 original size:9 final size:9 Alignment explanation
Indices: 15884402--15884431 Score: 37 Period size: 9 Copynumber: 3.2 Consensus size: 9 15884392 TGTAGTGAAA * 15884402 CAATATTTT 1 CAAAATTTT 15884411 CAAAATTTT 1 CAAAATTTT * 15884420 GAAAATATTT 1 CAAAAT-TTT 15884430 CA 1 CA 15884432 TGTTTCAAAG Statistics Matches: 17, Mismatches: 3, Indels: 1 0.81 0.14 0.05 Matches are distributed among these distances: 9 13 0.76 10 4 0.24 ACGTcount: A:0.43, C:0.10, G:0.03, T:0.43 Consensus pattern (9 bp): CAAAATTTT Left flanking sequence: Indices 15883902 -- 15884401 TTCTGTTTCACATTTACTAGATGTGTTTGAAAAAATAAAAAATCACTCGCTCCTTCAAACGTGTC CATTACAAAATCCAAAACTACATTGTCTGAACAAGCAGTTTCCATGAAATAACTCAAATTTACAT GTCATTGTCCAGGCCGTCTCGGAGCACAGACAGAATATTTAATAAATTGATAACAAATAATCCAA ATGACGATATTTTTCCACGGGGGGCGGAGGTTATTACTATAAAGTAGGTCAAAATGTTCGTGAAA GAGCAAGTCATTCGAGAGAAGAATGATTCTTTGGTTTTCTCTAGTGTTTGTGCTCTTTTTCAAAG CTTCCGATGGAAAAGCAGTGGAGCAAGTGCACCTGAGCCTCAGTGGAAACCCAAATGAGATGGTC GTGACGTGGCTGACACAGAATCCGCGTGAGTTATTTTAATTAGAAAACAGTTTTGAATTGCAAAA GTAATAAACATTTAAAAAAAGCGCCATTATCAAAATGTAGTGAAA Right flanking sequence: Indices 15884432 -- 15884931 TGTTTCAAAGTTCTTATAAAATGCGCGGAGCACTTAATTTTCGATGGGTTTATCAAAGTGCATAC ACAATTTTCTTCAAAATGCTAGTTTTGAAAATGTTTCTTCACAAAAAAATTTCAGGTGCTAGGCG GTAGGCACGCATGAGCAGAATATATACCTGCCTACCAATTTTTCAGTGTTTTCTGATAAAGTAAG ATATTATGAATTTAAAAAATTGGGAATATCAGCCGTGAGACTATTAACATGCTCTTGATCTTGAT GAAAAAATTGTGAATTGAGCAAAAATCAATGAAAATTACTTAAGATTTAGAAATTTCAAAAAAAA AGTCACCGATTCAAAGTTTTGTTTTAAAAACTTTAAATTTTTTATCATCAATAACCAATATATAG AAACACGCAATTTTCATAAACTCCAACTATTTTCCAGTACCAAATGTGACTCTATATGCATTATT CGGCGTTTCCCAGGATTCTCTGAGATTTACTGCAAAAGGAAATAC Found at i:15885417 original size:9 final size:9 Alignment explanation
Indices: 15885400--15885418 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 15885390 GAAATTGCCT * 15885400 GCCTGCACG 1 GCCTACACG 15885409 GCCTACACG 1 GCCTACACG 15885418 G 1 G 15885419 TTCAAAAACT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.42, G:0.32, T:0.11 Consensus pattern (9 bp): GCCTACACG Left flanking sequence: Indices 15884900 -- 15885399 GATTCTCTGAGATTTACTGCAAAAGGAAATACAACTGGATGGGCTGATCAGGGAAAACATAAAAC AATGAGATATACCCATAGGGCAACTATGCAGAATTTGGTACCCGGGCAGGTTTATTGTGAGTCTA GTTTTTTTCAATCGTTCGAATCGAATAGCCCAATTGCAATTTTTGAGTCTATAAACCAAATGATT GAAACAGTAAACATTGTTTGAAATTTATTATAACATGTGTTTCTAACACTTAATAGTGTTGAAAA TGCTATAAAATTGCAAAAAAAATGGAGAAAAAATTACAGTTTCAAATAGTTGAGAAGTAGAATCA ACCAGTCTATGACTTAATTGAAGATTTTTTTTGCACATCAATAAAAATTGTTTTTGAGTATAATT TTACTTTTTGAACGGTTTTAGAAGAACTAATTCCACAGAATTATATTGGATTATACTTAAATGAA GAAATTTTAAAGGGTCACCGAAAAACTAAAAGTTCGAAATTGCCT Right flanking sequence: Indices 15885419 -- 15885918 TTCAAAAACTGATTTTAATATAACTAATGCCGTATACATCATGGTAACAACGTTGATTACTTATT GTGTAATTATTGACACAGTGAAAAAGTCAATTTTTTATGTAGAAAGTTTATATTATATTCTATGG TCACATATCTTTTCGGCCTTTTTCGGCATTTAAAAACAACTTTGTTTCACAAAACTTATAAACAA GAATGAAAATAACTTTTTATCCTATAAAAACGTTTTCTAGAAACTTTTTCCTGTTTCAAAGTCTA CTAATATGTCATACATTCTTGTAAGGAATCACTTTTCTACCGCGGCAAATTAAAATTTTCTACTC TAAAATTAAATTTCAATGATAAAAATACTTTGCAAATAGCTACATCATCCTATGAAACAGGTCAA ATAATTATCTTATCGCAAAAAGTCAAACTACATTTATTGATACTGAAAATAAGTTTTTTTCAAAT TTTGCTGAGTTGTGATGTTTAGCATAGGAAATAATTTACTTTCAT Found at i:15885573 original size:10 final size:10 Alignment explanation
Indices: 15885558--15885579 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 15885548 GTCACATATC * 15885558 TTTTCGGCCT 1 TTTTCGGCAT 15885568 TTTTCGGCAT 1 TTTTCGGCAT 15885578 TT 1 TT 15885580 AAAAACAACT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.05, C:0.23, G:0.18, T:0.55 Consensus pattern (10 bp): TTTTCGGCAT Left flanking sequence: Indices 15885058 -- 15885557 CCCAATTGCAATTTTTGAGTCTATAAACCAAATGATTGAAACAGTAAACATTGTTTGAAATTTAT TATAACATGTGTTTCTAACACTTAATAGTGTTGAAAATGCTATAAAATTGCAAAAAAAATGGAGA AAAAATTACAGTTTCAAATAGTTGAGAAGTAGAATCAACCAGTCTATGACTTAATTGAAGATTTT TTTTGCACATCAATAAAAATTGTTTTTGAGTATAATTTTACTTTTTGAACGGTTTTAGAAGAACT AATTCCACAGAATTATATTGGATTATACTTAAATGAAGAAATTTTAAAGGGTCACCGAAAAACTA AAAGTTCGAAATTGCCTGCCTGCACGGCCTACACGGTTCAAAAACTGATTTTAATATAACTAATG CCGTATACATCATGGTAACAACGTTGATTACTTATTGTGTAATTATTGACACAGTGAAAAAGTCA ATTTTTTATGTAGAAAGTTTATATTATATTCTATGGTCACATATC Right flanking sequence: Indices 15885580 -- 15886079 AAAAACAACTTTGTTTCACAAAACTTATAAACAAGAATGAAAATAACTTTTTATCCTATAAAAAC GTTTTCTAGAAACTTTTTCCTGTTTCAAAGTCTACTAATATGTCATACATTCTTGTAAGGAATCA CTTTTCTACCGCGGCAAATTAAAATTTTCTACTCTAAAATTAAATTTCAATGATAAAAATACTTT GCAAATAGCTACATCATCCTATGAAACAGGTCAAATAATTATCTTATCGCAAAAAGTCAAACTAC ATTTATTGATACTGAAAATAAGTTTTTTTCAAATTTTGCTGAGTTGTGATGTTTAGCATAGGAAA TAATTTACTTTCATATTAGGAAAAAGAAAGAATGGAGTTTAAAGAAAACCAAAATATTAAATAGT AAAGGTGTAACATTAAAACATTTTTTTTTGAATAAGAAGAAACTATACTGAATTTTACATGAAAC CAAAATTAGCCAGGCGCTTAATATCCATTTCATTGCAAATCTTAC Found at i:15885972 original size:7 final size:7 Alignment explanation
Indices: 15885956--15885972 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 15885946 AAGAAAACCA * 15885956 AAATATT 1 AAATAGT 15885963 AAATAGT 1 AAATAGT 15885970 AAA 1 AAA 15885973 GGTGTAACAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29 Consensus pattern (7 bp): AAATAGT Left flanking sequence: Indices 15885456 -- 15885955 ATCATGGTAACAACGTTGATTACTTATTGTGTAATTATTGACACAGTGAAAAAGTCAATTTTTTA TGTAGAAAGTTTATATTATATTCTATGGTCACATATCTTTTCGGCCTTTTTCGGCATTTAAAAAC AACTTTGTTTCACAAAACTTATAAACAAGAATGAAAATAACTTTTTATCCTATAAAAACGTTTTC TAGAAACTTTTTCCTGTTTCAAAGTCTACTAATATGTCATACATTCTTGTAAGGAATCACTTTTC TACCGCGGCAAATTAAAATTTTCTACTCTAAAATTAAATTTCAATGATAAAAATACTTTGCAAAT AGCTACATCATCCTATGAAACAGGTCAAATAATTATCTTATCGCAAAAAGTCAAACTACATTTAT TGATACTGAAAATAAGTTTTTTTCAAATTTTGCTGAGTTGTGATGTTTAGCATAGGAAATAATTT ACTTTCATATTAGGAAAAAGAAAGAATGGAGTTTAAAGAAAACCA Right flanking sequence: Indices 15885973 -- 15886472 GGTGTAACATTAAAACATTTTTTTTTGAATAAGAAGAAACTATACTGAATTTTACATGAAACCAA AATTAGCCAGGCGCTTAATATCCATTTCATTGCAAATCTTACCTAACAGCCGACAAATAACAGGA TAATTTCAGATTATCAAGTAGGCAGTTCACAGGCAATGTCCTCCATTTTCCACTTCCGTCAACCC GATCCATCTCAACCGCTCCGAGCTGCAATTTTTGGAGATTTGAGCATTATTAAAGGCCAACAATC AATAGATCAACTAATTGAAGCTACAAAACAAAATCAATTGGATGTAATAATTCATATTGGAGACT TGGCATACGATTTACATGATGAAAATGGAGCAACTGGAGATGATTATATGAATGCAATTGAGCCA TTTGCTGCATATGTTCCTTATATGGTAAGCACCGGAAGAAATGGGATAAGTGTATTGAATACATT TAGTAGTTTAGCTATTTGTCAGAAACTTGAAAATGTAGTTTTTAA Found at i:15886487 original size:7 final size:7 Alignment explanation
Indices: 15886471--15886487 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 15886461 TGTAGTTTTT 15886471 AAAATAG 1 AAAATAG * 15886478 AAAATCG 1 AAAATAG 15886485 AAA 1 AAA 15886488 TAATTTTCAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.71, C:0.06, G:0.12, T:0.12 Consensus pattern (7 bp): AAAATAG Left flanking sequence: Indices 15885971 -- 15886470 AAGGTGTAACATTAAAACATTTTTTTTTGAATAAGAAGAAACTATACTGAATTTTACATGAAACC AAAATTAGCCAGGCGCTTAATATCCATTTCATTGCAAATCTTACCTAACAGCCGACAAATAACAG GATAATTTCAGATTATCAAGTAGGCAGTTCACAGGCAATGTCCTCCATTTTCCACTTCCGTCAAC CCGATCCATCTCAACCGCTCCGAGCTGCAATTTTTGGAGATTTGAGCATTATTAAAGGCCAACAA TCAATAGATCAACTAATTGAAGCTACAAAACAAAATCAATTGGATGTAATAATTCATATTGGAGA CTTGGCATACGATTTACATGATGAAAATGGAGCAACTGGAGATGATTATATGAATGCAATTGAGC CATTTGCTGCATATGTTCCTTATATGGTAAGCACCGGAAGAAATGGGATAAGTGTATTGAATACA TTTAGTAGTTTAGCTATTTGTCAGAAACTTGAAAATGTAGTTTTT Right flanking sequence: Indices 15886488 -- 15886987 TAATTTTCACTGTTTCAAAATTGCTTTAATTTTAAAATTACAAAGTAAGTGCTCTCTTGTTTAAT AGGATTCGCAATATTGTTTTATAGCATATGTGAAACTGTAATTGGGCAGAAAAAGTGGAAACAAA AATTTGTCTCGAAAACATGAGTGCATTGAAGGTATCGAAAAAAAAGGAACGAAAATCATGAATAA CATTCAAGTTTATCAACAGCTTGAAACTGTACTTGTATTAATTTTTAAATTATAGGAAAAGTATA GGAAAAGTGACAACAACTGAAAGGGGGAGGGATACTTCCTGACCCTTTTAAGCTCCATGAGTAGT TTTGAATTATTAAATTTTTTATCTACAATGCCTTGCAAAAAAGCAAAGAATTGCACAAATTGGCA AAATTTATCATGAAACAGAAAAGTTTAAAAAAATGTTTAAAATTCACGAGGGATCAAAGTTTTTT TTTTCTTGAGTCAACTAAAAAATTACGGTTTTAACATTTACATAA Found at i:15887141 original size:8 final size:8 Alignment explanation
Indices: 15887130--15887147 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 15887120 ATTCAAACAT 15887130 TTTTTAAA 1 TTTTTAAA * 15887138 TTTTTATA 1 TTTTTAAA 15887146 TT 1 TT 15887148 AACTTTTGGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72 Consensus pattern (8 bp): TTTTTAAA Left flanking sequence: Indices 15886630 -- 15887129 AAACATGAGTGCATTGAAGGTATCGAAAAAAAAGGAACGAAAATCATGAATAACATTCAAGTTTA TCAACAGCTTGAAACTGTACTTGTATTAATTTTTAAATTATAGGAAAAGTATAGGAAAAGTGACA ACAACTGAAAGGGGGAGGGATACTTCCTGACCCTTTTAAGCTCCATGAGTAGTTTTGAATTATTA AATTTTTTATCTACAATGCCTTGCAAAAAAGCAAAGAATTGCACAAATTGGCAAAATTTATCATG AAACAGAAAAGTTTAAAAAAATGTTTAAAATTCACGAGGGATCAAAGTTTTTTTTTTCTTGAGTC AACTAAAAAATTACGGTTTTAACATTTACATAAAAATAGGACTGTAATTTTTTCATCAGTTTCAT CACAGAGTCCCATTTCGTTCTATTTCACAAGGGTAATTATATTTGGTGAAAAGTGATATTTTTAG TTCAATTTTTTCAATAGAAAAAAGAATTTCATTTCATTCAAACAT Right flanking sequence: Indices 15887148 -- 15887647 AACTTTTGGCTGCACAGATCTGAGCCAAAGCCTATGTTGAAGCACCCGACATTTCACCGGTTTTC ACACAGTAAAACCCGTTAGATGTCGGGTGCAACTTCAATATTCCAGGTTTTCGCCGGAAACCACG AAGTCGACGGGGACTTCAACCATATCAAAAACCGCTTCACAATGCCTAGAAATGGAGTTTACGAC AACAATCTTTTTTGGAGTTTCACCTATGGATTTGTTCATATTATTGCAATAAACTCTGAATATTA CGCTGAAGAAATGTCAAATGAAGCCAAAGCTCAATATCAATGGCTCCGCGAGGATCTTGCACAAA ATACGAAAAAATGGACAATTGTAATGTTCCATAGACCATGGTATTGTTCAAGTAAAAAGAAGAAA GGATGTAATGATGATCAGGATATTCTATCAAGAGAAGGTGATAAGAAGAAGTTTCCAGGATTAGA GGAATTATTGAATCAGTATAAAGTTGATATGGTATTATATGGACA Found at i:15889728 original size:6 final size:7 Alignment explanation
Indices: 15889710--15889729 Score: 33 Period size: 6 Copynumber: 3.0 Consensus size: 7 15889700 AGACGTTTAA 15889710 AAATTTG 1 AAATTTG 15889717 AAATTT- 1 AAATTTG 15889723 AAATTTG 1 AAATTTG 15889730 TTTAGTTAGA Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 6 6 0.50 7 6 0.50 ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45 Consensus pattern (7 bp): AAATTTG Left flanking sequence: Indices 15889210 -- 15889709 AAAAATGCCACGTTTTCGGTTTTTCTTAACTGTCAAAATTCTGATAATTGGTAAAATCTCCAAAA ATTGCGAAAGATTTTCAAAATACTACCAAGTACGGGTTTTTTGGAAATTATATCAACATCACTGT TTCAAGAAATTTTTTTTTTGACAAATTTAATCCAATTTATTGATGGATTTGAAAAATTGAAACGT TTCATTAATAATTTACTATTCATAATGTTATAAAAAATGAATAAATATATATATTTTTGCTTGTG CCGCAATTTCTCGAACAAAAAGTCTGAATGTATCGTTTGTGCAGAGATTTACGAAGCTGTAAAAA TTATATATAATTTTTTCAAACAAAAAACTCCAACATACCGTCTACATGACTCCTGGGTACGCTGC ATGCACCATGTACTCCCATTCCAAAATTCACAGATTCTTTTATTGAGGAGGAAATACGGCAAGCA AATTCAGATGGGAGTACTGGAATTAACATTTTCAAAGACGTTTAA Right flanking sequence: Indices 15889730 -- 15890229 TTTAGTTAGATACAGTCAAAAACACGCCCCATTACTATATAGTTTTAATCGTGTCCTTCTGACAA AATATTGAAACAACACTTTTTGAAACATTTTTAAAACTTTTTTGATTCTAATCTATCCAACTATA AGACTAATTTTATAGGCTTTTAGTGGCAAGAAAACTTTTAAGATTGATGTGAAAATACATTTAAA AAAACACACAAAGAGTCGTAAAAGTGAGCAACACTAGCACCATCTTCATGTTTTCCGTCCGGCAG GTGGACAATAATCAGGGCCTTGTCGATTCTGTAAAAGGTGGTGTTATAGTAGCAGGGGATCGTTT TATTGCTCTGAATTGTTTTATTACTGCGGAAGTGTTCTATGATCACTTCTCATGTTGCACTGAGT GGACTTTAAAGACGCGAACAAAGTGCATGAGTATATACGCCGACTAGAGAATAACATCCTCAGTC GAAGAAGACCTTGCATGCACTTTTTTGGTGATTAATTAAGTTTGA Found at i:15897240 original size:10 final size:10 Alignment explanation
Indices: 15897225--15897244 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 15897215 AAACACTCCA 15897225 GATTCAAATC 1 GATTCAAATC * 15897235 GATTCAGATC 1 GATTCAAATC 15897245 TTTCGAAAGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30 Consensus pattern (10 bp): GATTCAAATC Left flanking sequence: Indices 15896725 -- 15897224 CCAACAAATATAAAAATTTAGGCGAAATAGTTGTTATGTTTCAACTAGTTGTCTAAGAGAACCGA AATAGTTTTGAGCTTTAATAGTGTAGAAAAGTGGTTGCTTGTTTAGTTATTCCGTTTGTTGCATT AAAATTATCTTGTTATTGTATATTTTTTCGTGAAATTATATTTTCAGTGTCTATTTCTGAAATTA AAAAAAAATTGAGAATTAAAAGCAATTTTTTCTTATATTTTGAAGAAAATATGAAGAGGGTGATG TTGATAAAATTAATTTTACAGTAGGATTTTACAGTTATAGAACTTGTCGGAAGCTTATAACAAAA AATGCCAATTTTCGTTCTTTTCTCAGAATATCAAAAACACTTCAAAAAACGTGCCATATTTTCAT AAGCTATTACTCATTTTCAAAACTCTATCAGAAATAGACTATTTGAAATAGTATTTTTCACTGTT TGAACAAACTCGGAGGTATTGCAGTAATTCTTCAGAAACACTCCA Right flanking sequence: Indices 15897245 -- 15897744 TTTCGAAAGACTAACTGAATATAATATGGAAAACAGTTTTTTTTTTTGGAAAATTGACAGTAATC TGTTTTCTTTCTATTTCAAATTTATTCAGCATCAATTGAAAAAAAATAATAAGAACTATTAACAA TGTGTAGAAACACGACATATTTTTCCGAAAAAAATTAATTTTATTTCTCACATTTCATTTAATAG ATTTTGACTGTAATTGAATTTTATTTCCCTAATTAGTTGGAAACACGTTGAAAATAAATTTTTAA AGAATAGATCGAGAATTTTAACCAAAATTTCAAACACTAAATTCATGCACATTTAAGTAGTATTT TCAAAATATTGAGTCACCTTTGTAAAAATAGTGACACAAAATAGTTTATACATTTTCAATAATTT GTCAAATTGACAACCAATTCAAGTGGAGTAATAGTGAGAGTGTTTTCACTTGAGTGCTGCATCGT GCTCTAGTAGTCCTGCAATCTCTAATAGTGCTGCATTCAAAAAAG Found at i:15904856 original size:8 final size:8 Alignment explanation
Indices: 15904843--15904858 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15904833 TTTCACATTT 15904843 TTCTCAAA 1 TTCTCAAA 15904851 TTCTCAAA 1 TTCTCAAA 15904859 AAAATTTTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38 Consensus pattern (8 bp): TTCTCAAA Left flanking sequence: Indices 15904343 -- 15904842 AGTGGCAAACTTTTATTTTTTATGGTTTCAATTGTAGACTGAGGGCTCTAAAATCAAATTTTTGA ATAATCACAACTGAAAACCAATTCGATAAATGATAAAAATTTTATCATTGAAATTATTTGAATTC GCAAAAAAAGAACAATAAAAATTGCACTATTTCATATTTTTCTCAAATTTCGGGGGAACTAATTG CGCTGCTCTCACTACCTGTTTTAATTTAAAAAAGCAATGCCTAAGCTGGATGTTTTTTTTACACA TGTGTAGGACGATGACAGTTGCAGATTGACTATGCCGTTTTTTTTTTCAAAAATCGATAGTTAGG TGACTTATTCAAGTTGCGTAAGGGTTTTGGAAAAACTTAAAAATTTTTCTATTTTTTTCTCGGTT TTAGGCCCTGGTTTTATGTTTTCTGGTTGATATATCAGAACGATTGGGATAATTGTAGACTACTT ATTAATAAATTATAGCATGAACGTTTTTGCTACTATTTCACATTT Right flanking sequence: Indices 15904859 -- 15905358 AAAATTTTTGTTATGTTACCCCTGTTGTTTGAACAAGTTTTTTCTGAAACGTTGGAAGACCTACA AACACAGAGATTTTTTAAACAATAAAATAATTTTTTTTGGAACTTTTTTTTTGGGTTTAATCATT GTTGTGGCACTTGTCTTTTGTTTTTCTTTTTTTTTCTTTTCCAATTAAATCTAATATTTTTTGGT TTTTGTTTTTTTTCTGTAACTTCCGGCAGTTTTCAATTGTCAAAATTGTCAAAAACTCTGGGTTT CTTCTAGTTTTCACAAAATTTTCTTAGCTTCGTTAGGTAGCCATGAAAAAATAACTTTTGGAAAT CTTACTCTGAATCAGTTTTTTATTACTTTTCCAGTAACGTCAACACATAACTGAAAATTTTTCAA AAACGATTACAAGTTTTTGCATTTACGTACTGACTTCCAATACTAAACCAAAAAATTTTGGGAAA ATAAAAATTTTCCGAGAAAAGTCGGTTTCATGTTGTTTTTAAAAT Found at i:15905065 original size:8 final size:7 Alignment explanation
Indices: 15905045--15905064 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 15905035 AAATCTAATA 15905045 TTTTTTG 1 TTTTTTG * 15905052 GTTTTTG 1 TTTTTTG 15905059 TTTTTT 1 TTTTTT 15905065 TTCTGTAACT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (7 bp): TTTTTTG Left flanking sequence: Indices 15904545 -- 15905044 CTCACTACCTGTTTTAATTTAAAAAAGCAATGCCTAAGCTGGATGTTTTTTTTACACATGTGTAG GACGATGACAGTTGCAGATTGACTATGCCGTTTTTTTTTTCAAAAATCGATAGTTAGGTGACTTA TTCAAGTTGCGTAAGGGTTTTGGAAAAACTTAAAAATTTTTCTATTTTTTTCTCGGTTTTAGGCC CTGGTTTTATGTTTTCTGGTTGATATATCAGAACGATTGGGATAATTGTAGACTACTTATTAATA AATTATAGCATGAACGTTTTTGCTACTATTTCACATTTTTCTCAAATTCTCAAAAAAATTTTTGT TATGTTACCCCTGTTGTTTGAACAAGTTTTTTCTGAAACGTTGGAAGACCTACAAACACAGAGAT TTTTTAAACAATAAAATAATTTTTTTTGGAACTTTTTTTTTGGGTTTAATCATTGTTGTGGCACT TGTCTTTTGTTTTTCTTTTTTTTTCTTTTCCAATTAAATCTAATA Right flanking sequence: Indices 15905065 -- 15905564 TTCTGTAACTTCCGGCAGTTTTCAATTGTCAAAATTGTCAAAAACTCTGGGTTTCTTCTAGTTTT CACAAAATTTTCTTAGCTTCGTTAGGTAGCCATGAAAAAATAACTTTTGGAAATCTTACTCTGAA TCAGTTTTTTATTACTTTTCCAGTAACGTCAACACATAACTGAAAATTTTTCAAAAACGATTACA AGTTTTTGCATTTACGTACTGACTTCCAATACTAAACCAAAAAATTTTGGGAAAATAAAAATTTT CCGAGAAAAGTCGGTTTCATGTTGTTTTTAAAATCTGAAAAAATGAGGTTTCAATCGTTTCAGCG ATCGAAAGACAACAAAACTATAAGGAAAAATGCTGTTTTAGATTGTTTTCAAACTCCAAATTAAT ACAGATTTTTGATGTATTTTTCAAAAACTGCGAATCAAATATTATTTACCTTCGAAAATACATGT ATTTCACAAGAATGAATCATATTTTTTAATTTTGAATAATTTATA Found at i:15905102 original size:9 final size:9 Alignment explanation
Indices: 15905088--15905107 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 15905078 GGCAGTTTTC 15905088 AATTGTCAA 1 AATTGTCAA 15905097 AATTGTCAA 1 AATTGTCAA 15905106 AA 1 AA 15905108 ACTCTGGGTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30 Consensus pattern (9 bp): AATTGTCAA Left flanking sequence: Indices 15904588 -- 15905087 TGTTTTTTTTACACATGTGTAGGACGATGACAGTTGCAGATTGACTATGCCGTTTTTTTTTTCAA AAATCGATAGTTAGGTGACTTATTCAAGTTGCGTAAGGGTTTTGGAAAAACTTAAAAATTTTTCT ATTTTTTTCTCGGTTTTAGGCCCTGGTTTTATGTTTTCTGGTTGATATATCAGAACGATTGGGAT AATTGTAGACTACTTATTAATAAATTATAGCATGAACGTTTTTGCTACTATTTCACATTTTTCTC AAATTCTCAAAAAAATTTTTGTTATGTTACCCCTGTTGTTTGAACAAGTTTTTTCTGAAACGTTG GAAGACCTACAAACACAGAGATTTTTTAAACAATAAAATAATTTTTTTTGGAACTTTTTTTTTGG GTTTAATCATTGTTGTGGCACTTGTCTTTTGTTTTTCTTTTTTTTTCTTTTCCAATTAAATCTAA TATTTTTTGGTTTTTGTTTTTTTTCTGTAACTTCCGGCAGTTTTC Right flanking sequence: Indices 15905108 -- 15905607 ACTCTGGGTTTCTTCTAGTTTTCACAAAATTTTCTTAGCTTCGTTAGGTAGCCATGAAAAAATAA CTTTTGGAAATCTTACTCTGAATCAGTTTTTTATTACTTTTCCAGTAACGTCAACACATAACTGA AAATTTTTCAAAAACGATTACAAGTTTTTGCATTTACGTACTGACTTCCAATACTAAACCAAAAA ATTTTGGGAAAATAAAAATTTTCCGAGAAAAGTCGGTTTCATGTTGTTTTTAAAATCTGAAAAAA TGAGGTTTCAATCGTTTCAGCGATCGAAAGACAACAAAACTATAAGGAAAAATGCTGTTTTAGAT TGTTTTCAAACTCCAAATTAATACAGATTTTTGATGTATTTTTCAAAAACTGCGAATCAAATATT ATTTACCTTCGAAAATACATGTATTTCACAAGAATGAATCATATTTTTTAATTTTGAATAATTTA TAACAAAGAATTTTTTTTACCTTTTATATAAACGTTGAAATAGTT Found at i:15906427 original size:8 final size:8 Alignment explanation
Indices: 15906416--15906433 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 15906406 CCACACTATC 15906416 ACAAAATT 1 ACAAAATT * 15906424 ACAAATTT 1 ACAAAATT 15906432 AC 1 AC 15906434 TGTTGCATAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.56, C:0.17, G:0.00, T:0.28 Consensus pattern (8 bp): ACAAAATT Left flanking sequence: Indices 15905916 -- 15906415 TTTTTTGCACACAGTGCCTTAAATATTTTTTACCTTCCAAAATATATATATTTCACAAAAATCAC ACTTTTTCTTGCAGCTGAAAATTTCCTATATTTTTTTTAAACAATGTAATATTTTTCTAAGTTTC ATAATTTATCAAAGTTTAAATAGTTTTTAACGTTTTTTTTTGTCGTTTTTTTTCCAGTTTGTGCT TACCAAGCATAACAAAAAATGAATTTACTCATAAAAAGTCAGTGTGCATGCTCTGGAACACGCCA CGCCCATTTTCTGACAAGTATACTTGCAGCTGCCACTTTTCTTCTAACTGCGATAATAATTCTTG GAACTCATTAATTCTGGATAATTTCTTATTTCGCAGTTTTTGCTTTCAGTTTGATTACATTTTTA CAAACTCTTTGCGATTTTCTTCTGCGGTTTAAGCTATAGAGGAAGAGAGAGAGAGAGAGGTGAGA GGAGACGCAAACGGTGAGAGGCGTCTCTTGTATTTCCACACTATC Right flanking sequence: Indices 15906434 -- 15906933 TGTTGCATATTAATCACTTTCAAAATTTGAATTGTTTTTTTTTCTAACACATACTGTTTCACCTT CTCTATTAATTCGTTTACTTTTTATTCCAGAGTTTCCATTTCATAATGATAACGGATCTATATTC CCTACCACTGGTCGCTCAAGTCGGTGAGCCACTCGACGAAAATCTGGAGCGAATTGTGGAAACTG TGCAATTTTCGATTTTCTGTTTCACATTGCCATTTTATGTTTTTGTCACATATTTTCTACTGGAC GCCTTGCATCGCGGAATTGACGAGTTGTCGACACCATTTTTTAGGCTTTGTATTACGACTGCGTT CCTTGATATCTGTAAGTTTTTTTTAGAATGTTGCACCCGACACTTGACGGGATCGAACTAAGCTT TTTTTTGAATTGAAAGTAGTTTTAGGTGACTTAGTGGAGAAATGATTTAAACATATTCTTAAACC GACTTACTGAAACTGAAATTTTTTTCAACAAAATTAAGTTCTTTG Found at i:15907228 original size:9 final size:8 Alignment explanation
Indices: 15907214--15907233 Score: 31 Period size: 9 Copynumber: 2.4 Consensus size: 8 15907204 TTAATATTAT 15907214 ATTAAAACA 1 ATTAAAA-A 15907223 ATTAAAAA 1 ATTAAAAA 15907231 ATT 1 ATT 15907234 GTGTATGTTT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 4 0.36 9 7 0.64 ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30 Consensus pattern (8 bp): ATTAAAAA Left flanking sequence: Indices 15906714 -- 15907213 CGAGTTGTCGACACCATTTTTTAGGCTTTGTATTACGACTGCGTTCCTTGATATCTGTAAGTTTT TTTTAGAATGTTGCACCCGACACTTGACGGGATCGAACTAAGCTTTTTTTTGAATTGAAAGTAGT TTTAGGTGACTTAGTGGAGAAATGATTTAAACATATTCTTAAACCGACTTACTGAAACTGAAATT TTTTTCAACAAAATTAAGTTCTTTGAAAAACGTTGTCAAACTTCATTGCACCAAAATTTAATTTT CTCAAAGGTACATAGAGCATTTCTCACGCGCAGGCAAAAAATTTGTGCGGGAAAATGAATTTGGT GACGTATTACGAGACACGCGTGGTTTTGGTGTTATAGTCTCATGGGTTTTGGTGATGAAAACTTG CGGTTTTTCCAAACGAAACAGATCGCGCAGTAGAGTTGACGTTTAACATGAAGTTGAAACAGTAT TTAATTTAAAAAAAAAAACCTAACGCTAAAATGACTTAATATTAT Right flanking sequence: Indices 15907234 -- 15907733 GTGTATGTTTTTTTTCAAAGTTATGAATACATTCTAACATTAAAATATTGCAAGGGCTCAGAAAT CCAAGCGATGCTCAAATTTTAGAAATTAAAAAAAACTGTTTCATTTGGATTTTAATTCTGTCTAA ATTCTTCAAAACTTATAGGTATTTTTGTTTTCAAATTGTCATACAAAACCGAGTAAAAATACTGA ATTTTTGAAATTTCAATTTTTTAAAATGTTCTTTCTTTTTTTCAAGCTTTTTTTTTAAATTCCTC GATGTCCATGAATAACGTGGAAAACTAAAAGCTATTGAATTTAAAATAGAATTGAAACAATATTT AAAACTTTTTTTTTTGATTTCAAAAGAATCGTTTTTTCGCATCCTCTGTTTGGAAATTGAGTCTT TCAGTTTGCCAACAAAAAATCAATAAAAATCGACTTGTTTTACAATAATAATTTTTTATTTAAAG AAACGGGAAAATTATCTGAGTACCTATAGACGACCAGCAGTTAAC Found at i:15907771 original size:8 final size:8 Alignment explanation
Indices: 15907760--15907776 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 15907750 TTACCAATTT * 15907760 ATTTTTAA 1 ATTTTGAA 15907768 ATTTTGAA 1 ATTTTGAA 15907776 A 1 A 15907777 CTATTTTTTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53 Consensus pattern (8 bp): ATTTTGAA Left flanking sequence: Indices 15907260 -- 15907759 ATACATTCTAACATTAAAATATTGCAAGGGCTCAGAAATCCAAGCGATGCTCAAATTTTAGAAAT TAAAAAAAACTGTTTCATTTGGATTTTAATTCTGTCTAAATTCTTCAAAACTTATAGGTATTTTT GTTTTCAAATTGTCATACAAAACCGAGTAAAAATACTGAATTTTTGAAATTTCAATTTTTTAAAA TGTTCTTTCTTTTTTTCAAGCTTTTTTTTTAAATTCCTCGATGTCCATGAATAACGTGGAAAACT AAAAGCTATTGAATTTAAAATAGAATTGAAACAATATTTAAAACTTTTTTTTTTGATTTCAAAAG AATCGTTTTTTCGCATCCTCTGTTTGGAAATTGAGTCTTTCAGTTTGCCAACAAAAAATCAATAA AAATCGACTTGTTTTACAATAATAATTTTTTATTTAAAGAAACGGGAAAATTATCTGAGTACCTA TAGACGACCAGCAGTTAACTATAGTATATTAGTGTTTACCAATTT Right flanking sequence: Indices 15907777 -- 15908276 CTATTTTTTTGTTGAACGTTTCTTTCGGTATTTAGAAAATCGCCCACAATAATTTTGAAACAAGT TATCATACATTTTACACAATTAATCAAATATTAAAAATTCGCAATAATGGAATACGATTTTCATT TTCTAACAAATGTTTGATTCGAAACAGCAAAAAAAAATTAATTTTTAAAAACAATTTTTCAATAA CCCTTTGTACTAACAATAAAAAGGCTAAAATTTTTAAATTTCTTCCAATTTAGATCTACAAATAC CTAAACAATAATACTGTATGAATATTAAATATGAATAAAAAAAATTTCAGGGACCCTACTGAACA ACTATCTCGGCGCCATGTTTCCCAAATGGGGTTGGGGAACGAGTGTTTATTTATTTTTGGATTCA TATTATGCACATGCGTATTTGTATTTTGCATGGGCTTCTGGTAATGTATTTTTTGAAAATTCCAA AAAAAAATTCGAGCTTTGATTTTTAATCTTATAATCTCACGTGTT Found at i:15911334 original size:9 final size:9 Alignment explanation
Indices: 15911320--15911337 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 15911310 GTAAAAAATT 15911320 TTTCAGCAA 1 TTTCAGCAA 15911329 TTTCAGCAA 1 TTTCAGCAA 15911338 ATTTTGAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33 Consensus pattern (9 bp): TTTCAGCAA Left flanking sequence: Indices 15910820 -- 15911319 AAATTTTCATTGTTTCAACTCGTCTTCAGAAAATGGGCAAAGTTCAGTTTTTAATTTCTATTTTG TTCATTTTTAATGTTTTTTTTTTATTTGGTGAAACCTTTAGACACCAACGTAAACCTGAAAATAT GCCTGCCCTATACCTACCTTTGCAATTTTCTAAAAATTGTACTGTTTGCGAATGCAAGGATGTTT ATTCAAAAATTACAGCATTGACTGAAATTCCACGTTAATCTGAAATATGGTTTATTCTTAGTAAA CGTTGAACAATAAGGCTTTAAGAAGAAAAAAATTATTCCAACAACTCTCGCTCAATTCCTAACTA TTTCTTGGAGACACTTGTTATTAACTGTTTCATGTTGTTCAAATAACGTTTGTCGTTTTTAAGTG AGTATTTCTCATCCGGTCCAAGAGGTTATAACAATACAAATCGTATAGTAAGACACTATGCGCAG GCTTTTCCCAAATATTTTTTCGCGAATTTCAGAACGTAAAAAATT Right flanking sequence: Indices 15911338 -- 15911837 ATTTTGAAAAAAAAAATCAACAGTTTCTAGTAGTTATTTCTAGTAATTATTTCAAGCTTATTTTC TAGTTTCCACAATTTTTGCTTGTTCCCAAAAATGCAAGTTGGTTCTTTTTTTCCTTCATAAAAAA GGCAAAAATGAGTTTGGTTTTAATATGGTTTTAAAAACAGTTTTCGCACAAAATAATGACGCCAT TTCTGACATTTTTTTTTGTTTTTTCGCAATACTGATTGGTTTCAAACTTGACTTGTCACATTTTC AGATAATTTTCCGTAGAGATCAGTTAAAATTAATGTTAAATTATCGATTTTTTAGGTCCAATTTT AGAATTTTTTCGGGTCGACCAGGTTTCTTCCTGGAAAAATGTCTGTAAAATTGACAAGTGGCGTT TAAAGAGACACCAATTAATTTACCCGGAAAATGTAAAAAATACCGAAACTCGTTTGCGAGGGGAT TCAAAAAATAATTCGCCTCTTCCGAATTTTATTTTGCAAATTTTT Found at i:15911846 original size:9 final size:9 Alignment explanation
Indices: 15911830--15911851 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 15911820 TTTATTTTGC * 15911830 AAATTTTTA 1 AAACTTTTA * 15911839 AAACTTTTT 1 AAACTTTTA 15911848 AAAC 1 AAAC 15911852 AGATGTATTC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45 Consensus pattern (9 bp): AAACTTTTA Left flanking sequence: Indices 15911330 -- 15911829 TTCAGCAAATTTTGAAAAAAAAAATCAACAGTTTCTAGTAGTTATTTCTAGTAATTATTTCAAGC TTATTTTCTAGTTTCCACAATTTTTGCTTGTTCCCAAAAATGCAAGTTGGTTCTTTTTTTCCTTC ATAAAAAAGGCAAAAATGAGTTTGGTTTTAATATGGTTTTAAAAACAGTTTTCGCACAAAATAAT GACGCCATTTCTGACATTTTTTTTTGTTTTTTCGCAATACTGATTGGTTTCAAACTTGACTTGTC ACATTTTCAGATAATTTTCCGTAGAGATCAGTTAAAATTAATGTTAAATTATCGATTTTTTAGGT CCAATTTTAGAATTTTTTCGGGTCGACCAGGTTTCTTCCTGGAAAAATGTCTGTAAAATTGACAA GTGGCGTTTAAAGAGACACCAATTAATTTACCCGGAAAATGTAAAAAATACCGAAACTCGTTTGC GAGGGGATTCAAAAAATAATTCGCCTCTTCCGAATTTTATTTTGC Right flanking sequence: Indices 15911852 -- 15912351 AGATGTATTCAGTATATTGGTAGTGTATTCTGTCGTTGAGGGTAAAAAAAACAAAAAAAAAGAGA GAAAATAAATTACCGTTTCGTCGTGTTGTTATCATGATATTGCTATATTCCAATCAATCCTTTCT TATGACGGTTTGAAATGAAATGAAATTGTAAGAAACATTGAAGGCAACCACCAGTCGCTCAGGAA AACTTAAAAGTGACAAGAATTCCGCCTTATTGATAATTCAATGAAGTATGTGAATTAATAGGGAC TAAAAAAAATCAATATAAAAATGTTCAAATTTTGAATTTTTCAAATATATAAAACAATGGATATT TTCTTAGGGGAAATGATGTTGAAATGAAATGAAAATGAGATGGTTACAAAAATCACAACAAGTGG CTCTATTTTTGGATTCCGATGTATTTTTATTAAAATTATAATTATAGATGCGCATTTCCCTATTT CTATGAAACAGTAGATTTTTTTTCATTTTTAATACCTTTTATTTC Found at i:15913132 original size:9 final size:9 Alignment explanation
Indices: 15913115--15913136 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 15913105 ATGTTATAAA * 15913115 AAAAGATTT 1 AAAAAATTT 15913124 AAAAAATTT 1 AAAAAATTT * 15913133 TAAA 1 AAAA 15913137 GCCGTTGCAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32 Consensus pattern (9 bp): AAAAAATTT Left flanking sequence: Indices 15912615 -- 15913114 TTGTAGGCTTCTTGTACATGTTGAATATTAAGTTCAATATGTGTTTAATATACTGACGGTCATCA ATATCTTTCGATTTAAAAATTACACAAAACAGCGAAGAATGTTCATTATTTAGATTCAAAAAAAT CTAGTCACAAACAAAATTTGAAAAATTCTATACTGTGTATTGTTGTTTTCACTGTCATTGATAAA ATAAATCCATTATATTCCTCTTCTTCACGTACAAACAGTAACTTGCATTCGAGGCGACCTATGCC TGACTCGTGCCTACACAAAACAATGTGATCATTTTATTCGTTCCCAATCTATTTCTGTAGTCTAC TGCTTTGGAAACTTATTTGTACGATTAAGATACTATTACGAAACAATTGAAAATTGTGAACAAAA TTAAAAAAAAATAATTTTTTGCATTTTTCTTGGTAACATAAAAAAACGAGATAATGAATTCGAAA CTACTTTCTCTTGAATCCTGAAGACTGATTTGAGAATGTTATAAA Right flanking sequence: Indices 15913137 -- 15913636 GCCGTTGCAACAACCAACAATAAACAACAGGCTCCACGTATTTTTGTAGTTGACAATTCTTCGGT GAAGTAAGTGGGAATTATTATAACATCTGTCAAAGAAATGATAAGAGTGAATCTAAAAAACGTGA TAACACTTACTAGCAACTTGAAACAGTTAATCTTTTTTCTTTTTGAAAATGTGTTTCCCTATCTG ACGATTTGAGGAGTGTAGAACGATGAATCAGGCGTAATTAGGCAAGATGTGGGCGGAGTCATGTT ATCAGCGGTTTATTTTCTCCAGTTAAGCCCCTCCCACTGAGAGGGTGCGATTAGAAAATAATTAG AGCAATTTTTTTTTTAAATTTTTGTGCCTGCAGCTAACCGTTAAAGGTTCACAGTTAAGTGTCAC AGCTGTGTTACGCGAATAGTTCAAGGCATAGGCTCCACCCATTCTCTAATATGCCTAAAAAAAGC TAATATGCCTAAAACTTTGAAATTGTTTTTCGTGGCTTATGAATA Found at i:15913309 original size:7 final size:7 Alignment explanation
Indices: 15913297--15913310 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 15913287 AAACAGTTAA 15913297 TCTTTTT 1 TCTTTTT 15913304 TCTTTTT 1 TCTTTTT 15913311 GAAAATGTGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86 Consensus pattern (7 bp): TCTTTTT Left flanking sequence: Indices 15912797 -- 15913296 TGTCATTGATAAAATAAATCCATTATATTCCTCTTCTTCACGTACAAACAGTAACTTGCATTCGA GGCGACCTATGCCTGACTCGTGCCTACACAAAACAATGTGATCATTTTATTCGTTCCCAATCTAT TTCTGTAGTCTACTGCTTTGGAAACTTATTTGTACGATTAAGATACTATTACGAAACAATTGAAA ATTGTGAACAAAATTAAAAAAAAATAATTTTTTGCATTTTTCTTGGTAACATAAAAAAACGAGAT AATGAATTCGAAACTACTTTCTCTTGAATCCTGAAGACTGATTTGAGAATGTTATAAAAAAAGAT TTAAAAAATTTTAAAGCCGTTGCAACAACCAACAATAAACAACAGGCTCCACGTATTTTTGTAGT TGACAATTCTTCGGTGAAGTAAGTGGGAATTATTATAACATCTGTCAAAGAAATGATAAGAGTGA ATCTAAAAAACGTGATAACACTTACTAGCAACTTGAAACAGTTAA Right flanking sequence: Indices 15913311 -- 15913810 GAAAATGTGTTTCCCTATCTGACGATTTGAGGAGTGTAGAACGATGAATCAGGCGTAATTAGGCA AGATGTGGGCGGAGTCATGTTATCAGCGGTTTATTTTCTCCAGTTAAGCCCCTCCCACTGAGAGG GTGCGATTAGAAAATAATTAGAGCAATTTTTTTTTTAAATTTTTGTGCCTGCAGCTAACCGTTAA AGGTTCACAGTTAAGTGTCACAGCTGTGTTACGCGAATAGTTCAAGGCATAGGCTCCACCCATTC TCTAATATGCCTAAAAAAAGCTAATATGCCTAAAACTTTGAAATTGTTTTTCGTGGCTTATGAAT AAAATTTAGTAATTACAGTTCCGGTGCGTTATCATTAGATGAGTGGTTAAAACATACTGTTTTGT GTAACTGCCTTTAAGGCAACCTACGCCTGTCTTGCACCTAGAGCTTTTCTATACGCAAAAAAAAT AATATTTGCAGTGTTTATAACGCGAACACCACTTTCGAAAATTAT Found at