TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:14879261 original size:7 final size:7 Alignment explanation
Indices: 14879249--14879262 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14879239 CATATTTTCT 14879249 GAAAATA 1 GAAAATA 14879256 GAAAATA 1 GAAAATA 14879263 AGTTGAACTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (7 bp): GAAAATA Left flanking sequence: Indices 14878749 -- 14879248 AACATGCCTGAAGTGTGTTTTTTTTTTAATTTTAGAATCAAGTTTTAGAATTGAGTGCACTTACA GAAAGACCAAGTTGTTCTTATTCCTTGATTCGCATATCTTTCGCATTCAATTGTCCTTTCTGGAC AATCCCTTCGGTTAAACTTATTCACACACTTTTCACCGTAAGCCGCACAAATTTCTTTCTGAAAT GACTCAAATTGATGTTAGAATTTGCAAAAAAGAATGCCCCGAACCAGGATCGAACTGGTGACCTT ACGATCTTCAGTCGTACGCTCTCCCAACTGAGCTATCGAGGCCGACATGCAAACTGGTTATTTGT GCCGTCAAGACCGTGAGGGTACTTCCTCACAGCCAATGAACAGAGAAGGCGAGAGAAAATATTTT ATCGTTGGAGCAAACTTACGATAGGGAAAGAAGGAGGGTTCGGCATAGAGTAAGCCATCAAAAAT AGTGCCAAAAAGACTATGAAGGTGAGGAGTGTGTTCATATTTTCT Right flanking sequence: Indices 14879263 -- 14879762 AGTTGAACTATAAAAATATTAACTAAATGAAAAAGAAAGAACATATGAATATGAAAATTATGTGT ACCGGGAAACAAAAAGTTATTGTTATGTATTCGAGGCAGAACCAGGAGGCGAAGACGAGTAGTTT ATTATTACATAACTAAGGAATAAATAAGTTAGTTCATAGAGTTCACGTTGTACGATCTTCTTAGC CACGTCGTGGGTCAATACACGTTGATACCCAAAAGTTATGTTAAAACAAGTTAAAATTAATCATC GAAAATTTTTTGACTTTTGAGTCTCGAAGAAACTTCGCATCTACCGTAACCAAAGTGTCAAAATG TAGTACGGTAGATTTGAAGTTTTGGTCGGGTCGAGACCGGGAGTTTCAACTATAAATATATTCTA TCAGGTCAAAAAGCAGTTTTCACGAATTTCATGGCGAATAATGATGGGTGTTATTTACAATTTTA CAGGTCAGGCAAATATTAAAAAAAAATCAGAGAGTCGACCAAAAA Found at i:14880386 original size:7 final size:7 Alignment explanation
Indices: 14880374--14880392 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 14880364 GAGTAGGTGC 14880374 CGAAATG 1 CGAAATG * 14880381 CGAAATT 1 CGAAATG 14880388 CGAAA 1 CGAAA 14880393 AGAAAATAAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.47, C:0.16, G:0.21, T:0.16 Consensus pattern (7 bp): CGAAATG Left flanking sequence: Indices 14879874 -- 14880373 TCGAAAGTTTTCAGTAAAAGAACCACAGGTCACCCGATTCCGGCAATTCTACTTTGTTATTGTTT TTCTTTATTTCTTTCAGAACAAATTTGAAACAAAAGTAACAAATAGATAAATAATCGGTGACACA TAGATATCAGGAAAAATGGGAAGAAGATGGTGAACGAACAAAAAATAAAAGAGAAAAGAATTAAT ATAACGGCGGGAAAAATGAGAAGATCGGGTGGTTGTGAATGATGGGAAACCGACAGCTATTGTGT GATCATCAATCCATTCATCTGCCAAAAAATTGGAGGAGAAAAGAGAAAGTGGTGGTCACTTTTCT TGTTTGGATATTTCTGTTCTTGTTTCGGATGGATATTCCTTTTATGGAAATGGATCACGAGTGAC CTATGTGGAGGTGGCTAATGTGAACCGATCATGCGGAGGTCGTACGTCAGTGTTGCAAATTGGGT AAAGGTCAGTTTCTGTAAAGTTTTTCTGTGGAAAAGAGTAGGTGC Right flanking sequence: Indices 14880393 -- 14880892 AGAAAATAAAAAACTCAGAAAATTAAACTTTTTTGTAGTCATTGTAAAACTCTGACAGAAGTGCC AGGCGCAAAATTTTACGCATGTATATTAAAAGGCTAATACCACTGGGCTTGCGGGATGCTAGTTC AAATGTAAAGTTATCAACACCCACACAAAATTTAGTTTTGATTTGGAATTTTCTCATTGATTTTT TTTTCACTATTTTCTAGGTCTGTAGAATTTCTCCTTTTTCACCCAACAATCCTTTTGGGTTCTGT TTTAAACTTCATTATTGGTGTATAATACATTTTGCATTGTAAACTTGAATGGATAAAATTGAAAA TGAGATTTATTTTTGATCTTAAATTGTGTTTAATGCGTCTCTAAATTTGAAATGAATTTTTCTAA TTTTTGTTTTCTTGTTTACTTTTTGACCTTTTCCTATTGTTTTTATAGATTTTATCAGCAAAATG ATGACAAATAGTTGGTATAAATAAGGAGGAAATTGTCACTCAAAT Found at i:14880797 original size:8 final size:8 Alignment explanation
Indices: 14880786--14880803 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 14880776 TTTCTAATTT * 14880786 TTGTTTTC 1 TTGTTTAC 14880794 TTGTTTAC 1 TTGTTTAC 14880802 TT 1 TT 14880804 TTTGACCTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.06, C:0.11, G:0.11, T:0.72 Consensus pattern (8 bp): TTGTTTAC Left flanking sequence: Indices 14880286 -- 14880785 AACCGATCATGCGGAGGTCGTACGTCAGTGTTGCAAATTGGGTAAAGGTCAGTTTCTGTAAAGTT TTTCTGTGGAAAAGAGTAGGTGCCGAAATGCGAAATTCGAAAAGAAAATAAAAAACTCAGAAAAT TAAACTTTTTTGTAGTCATTGTAAAACTCTGACAGAAGTGCCAGGCGCAAAATTTTACGCATGTA TATTAAAAGGCTAATACCACTGGGCTTGCGGGATGCTAGTTCAAATGTAAAGTTATCAACACCCA CACAAAATTTAGTTTTGATTTGGAATTTTCTCATTGATTTTTTTTTCACTATTTTCTAGGTCTGT AGAATTTCTCCTTTTTCACCCAACAATCCTTTTGGGTTCTGTTTTAAACTTCATTATTGGTGTAT AATACATTTTGCATTGTAAACTTGAATGGATAAAATTGAAAATGAGATTTATTTTTGATCTTAAA TTGTGTTTAATGCGTCTCTAAATTTGAAATGAATTTTTCTAATTT Right flanking sequence: Indices 14880804 -- 14881303 TTTGACCTTTTCCTATTGTTTTTATAGATTTTATCAGCAAAATGATGACAAATAGTTGGTATAAA TAAGGAGGAAATTGTCACTCAAATCACGATCAAATCGATCCCAACAACTCTCCCAACAACACCTC AAGATGAATGCCATCTACACTGCCGTCCTTGTTGCTTCAACTCTCGCCTACACTGCAATGGCTTG GATTGGACTCAGCATTGAAGCCGCCAACGAGGATATGTTCTGAAGTGGTACCCATCAAAGCGTAT CGGACATCCTCGTATTGAATAAAACTTTTGTATGCGTGTGTATGTTGTTTGACAGTCGATGTATC GCTATCCGAACAAGTTTCAAGAAGTTTTCTAGCAAATATAGCCTTATTATCCAGGGAGTTCACTT TCCTCGCAGTGATGCCACCAATACTATTGTTCTTGCACTTATTTGGAGTAATCATTTCATTTCAA TGTTTGAGGTGATACGAAGGCGCCTCTCACTCGAACTCATTGCGC Found at i:14881892 original size:8 final size:7 Alignment explanation
Indices: 14881877--14881898 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 14881867 AAAAAAACAT 14881877 TATTTTC 1 TATTTTC 14881884 TAGTTTTC 1 TA-TTTTC 14881892 TATTTTC 1 TATTTTC 14881899 ACAAACTTAG Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 7 7 0.50 8 7 0.50 ACGTcount: A:0.14, C:0.14, G:0.05, T:0.68 Consensus pattern (7 bp): TATTTTC Left flanking sequence: Indices 14881377 -- 14881876 AAAGGTCGACGCCAGTTTTTTCAGGCAACTTTTGAGCAAACGGAGTTATTAGAAAATTTCCTTTG TAAAGTTTTTTCCAGTTTTTTCAAAATTGGTTTTTACAGAGATTTAAACAGAGGAGCACGTTAAA CTATAAAAAGTCGTTCTGCATATTTTTCAATTAATTTTTTATTATTTTCGAGACTCGTAAAATTG CTTCAAAAGTGGACTTCTGATTGCATCAAGGATGTTACCTTTAATTTTCAGATTTTTTTTTAGGG AATAAAACTTCCGGAAGACCATGCGAAATTTGAACTTCCAAGAAAAATAAAACAGCAACCTGAAA TGTGTTTTTTCCAATGGAAATTAAAATATAACGGGATCAGCGGAGTTCGAAATGTAGTATCTATT CTAAACTGTAATTTCAAGAAGACTATCCAAGGAAAAATTAAAAAACAGTTTCTTGTTTCGCGAGT GGCAGACTGTGTTTATATTGATTTCCAAACTTATCAAAAAAACAT Right flanking sequence: Indices 14881899 -- 14882398 ACAAACTTAGTTCTTATATAAAAAGTTTTCAAGAGTGTAAACAATTCAAAAAGATACAATGAGCA ATTATGTTGAGATAAATATGAAACAGTGACCGAAACTTTACCGGTTTTTCTGTGTGACTGACTAG AAAAGTCCCCTTGATTGAAAGTTCGTTTTTTACAATAAAAACAAAATTAATGCTTCAACATATTT ATGAAACAATCGGGTCATAAAAAATTAATTACTCTTTTGAGGTCCGCCTTGCCCAGATTGTCCAG ATTTTCCATTCCCACTGTTTCCATCAGTTCCAGCTATTTTTTGATTTCCTTGTCCATTTGGAGCA CCTCCAGAACCATTCGATGCAGTTGTTGCTTTTCCTCCATTCTTGTTCTCTCCACCATTTTGTTG TCCACCTTCCTTATTATTTTGAGCAGAAGCCACAACAAAAGCAACGATAAGAAGAACAATAGCTA GCTTTGAAGAAAACATTTTCAGAATTGAATTCAGAAACTGAGTGA Found at i:14882160 original size:9 final size:9 Alignment explanation
Indices: 14882142--14882166 Score: 36 Period size: 9 Copynumber: 2.8 Consensus size: 9 14882132 GAGGTCCGCC * 14882142 TTGCCCAGA 1 TTGTCCAGA 14882151 TTGTCCAGA 1 TTGTCCAGA * 14882160 TTTTCCA 1 TTGTCCA 14882167 TTCCCACTGT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36 Consensus pattern (9 bp): TTGTCCAGA Left flanking sequence: Indices 14881642 -- 14882141 AACTTCCGGAAGACCATGCGAAATTTGAACTTCCAAGAAAAATAAAACAGCAACCTGAAATGTGT TTTTTCCAATGGAAATTAAAATATAACGGGATCAGCGGAGTTCGAAATGTAGTATCTATTCTAAA CTGTAATTTCAAGAAGACTATCCAAGGAAAAATTAAAAAACAGTTTCTTGTTTCGCGAGTGGCAG ACTGTGTTTATATTGATTTCCAAACTTATCAAAAAAACATTATTTTCTAGTTTTCTATTTTCACA AACTTAGTTCTTATATAAAAAGTTTTCAAGAGTGTAAACAATTCAAAAAGATACAATGAGCAATT ATGTTGAGATAAATATGAAACAGTGACCGAAACTTTACCGGTTTTTCTGTGTGACTGACTAGAAA AGTCCCCTTGATTGAAAGTTCGTTTTTTACAATAAAAACAAAATTAATGCTTCAACATATTTATG AAACAATCGGGTCATAAAAAATTAATTACTCTTTTGAGGTCCGCC Right flanking sequence: Indices 14882167 -- 14882666 TTCCCACTGTTTCCATCAGTTCCAGCTATTTTTTGATTTCCTTGTCCATTTGGAGCACCTCCAGA ACCATTCGATGCAGTTGTTGCTTTTCCTCCATTCTTGTTCTCTCCACCATTTTGTTGTCCACCTT CCTTATTATTTTGAGCAGAAGCCACAACAAAAGCAACGATAAGAAGAACAATAGCTAGCTTTGAA GAAAACATTTTCAGAATTGAATTCAGAAACTGAGTGACCGATATTTCTAGTGAGACATCTATGGG CGTTTTATACCAAAAAACTGATGATGAACTGCATTGCAAATCTGATCAGGTACAGATAGGAGGAA AGTTCAACTAACAAAACATAGATGACAGATTTTTTTCATAACATGAGTAAGTATTATGAAAAAAC ATAGTGAAACTATTTTTATTTGAAGATATGAATAAAACATTCAACTGAGAGTTGTTTTTCAGCAA ATGCTCTACAGTTTCAATTTCAGAAGACGAACACAAAATACACAA Found at i:14884745 original size:10 final size:9 Alignment explanation
Indices: 14884732--14884750 Score: 29 Period size: 10 Copynumber: 2.0 Consensus size: 9 14884722 CCAAATTTAC 14884732 AGAAATAACG 1 AGAAA-AACG 14884742 AGAAAAACG 1 AGAAAAACG 14884751 TTAAATGGCC Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 9 4 0.44 10 5 0.56 ACGTcount: A:0.63, C:0.11, G:0.21, T:0.05 Consensus pattern (9 bp): AGAAAAACG Left flanking sequence: Indices 14884232 -- 14884731 CTGATCGCTCTGACTTTATCTCCATTGCCGGCTTTCCTTTTTGAGGGGGCTTTCGGCCACGGAAC ATTCGGATTGAGTCCTGTCTGAAAGTAGGATTTGACATGACTGACTTCATTTCTCAGCCAATTGA AAAATCTGTAGTTAGTAGTATTTGTAGCTTGTAGTCCATGATGTTACACCTCACACCAACTTCAC TCACACATCATTCCTTTGCTTCCTTTGACTAACCTCACTCCTTTTCTGATCGCGCTCTGATGGTC GTTCTGACACCTGTGTTTGTGATACTGAAATATCACTGTTTCCTCGTTGGGATTTTCGTTCTCTG AAAGTCAAGAATTCAGTCTGAAAACAAACAAAAAAAATTACCTTGAAGAGCCACGCTGTGCACAT GAAAAGATTGAAAGCAGAAGTAACGATGTGAATAATTGAAGACACTCTATGATTGTGATTTTGAA CGAATTGAGCATTTTATTGGAAATTTTACAAAGTGCCAAATTTAC Right flanking sequence: Indices 14884751 -- 14885250 TTAAATGGCCAAAACAAACTTTGACTTGTGAATTGTGACCTTTCGAGAAAAATAAAATAGCAACG TGAAATTCAGTTTTTCCAATGTGAATGATAGTACGACGGATTCAACGGTGAATTTTGGATCTACT TAAATAGGTAATTTTAAGAAAATTATAAAATTAAAGAGTTTGAATTTTATTACAGTTTCTCATAA ATTCTTTAGAAACTCTTTTTTAATTTGAGGACATATAGAGATGACAATCGTAGTAGAACGTCAGT TTTTTGAAAATAAACTTCAACGATTTTAAATTTAGTTGAAGATAAGAGAGCATATTGCAGATTTT TTTTTCAAAAAAATAATAACAAAATCCAAATGTTTGCCTATTACCAAGCATCGTTCAAATTATTG AAAACTTACAAAAACCACTTTTTGAGGCATACTATGGTCACCAAATAAATTAAAAAATGAACTCA AAAATATTTCAAACCGAATTTTCCGGGGTTTAGAGTTTAGTACCG Found at i:14884788 original size:7 final size:7 Alignment explanation
Indices: 14884772--14884788 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14884762 AAACAAACTT * 14884772 TGACTTG 1 TGAATTG 14884779 TGAATTG 1 TGAATTG 14884786 TGA 1 TGA 14884789 CCTTTCGAGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41 Consensus pattern (7 bp): TGAATTG Left flanking sequence: Indices 14884272 -- 14884771 TTGAGGGGGCTTTCGGCCACGGAACATTCGGATTGAGTCCTGTCTGAAAGTAGGATTTGACATGA CTGACTTCATTTCTCAGCCAATTGAAAAATCTGTAGTTAGTAGTATTTGTAGCTTGTAGTCCATG ATGTTACACCTCACACCAACTTCACTCACACATCATTCCTTTGCTTCCTTTGACTAACCTCACTC CTTTTCTGATCGCGCTCTGATGGTCGTTCTGACACCTGTGTTTGTGATACTGAAATATCACTGTT TCCTCGTTGGGATTTTCGTTCTCTGAAAGTCAAGAATTCAGTCTGAAAACAAACAAAAAAAATTA CCTTGAAGAGCCACGCTGTGCACATGAAAAGATTGAAAGCAGAAGTAACGATGTGAATAATTGAA GACACTCTATGATTGTGATTTTGAACGAATTGAGCATTTTATTGGAAATTTTACAAAGTGCCAAA TTTACAGAAATAACGAGAAAAACGTTAAATGGCCAAAACAAACTT Right flanking sequence: Indices 14884789 -- 14885288 CCTTTCGAGAAAAATAAAATAGCAACGTGAAATTCAGTTTTTCCAATGTGAATGATAGTACGACG GATTCAACGGTGAATTTTGGATCTACTTAAATAGGTAATTTTAAGAAAATTATAAAATTAAAGAG TTTGAATTTTATTACAGTTTCTCATAAATTCTTTAGAAACTCTTTTTTAATTTGAGGACATATAG AGATGACAATCGTAGTAGAACGTCAGTTTTTTGAAAATAAACTTCAACGATTTTAAATTTAGTTG AAGATAAGAGAGCATATTGCAGATTTTTTTTTCAAAAAAATAATAACAAAATCCAAATGTTTGCC TATTACCAAGCATCGTTCAAATTATTGAAAACTTACAAAAACCACTTTTTGAGGCATACTATGGT CACCAAATAAATTAAAAAATGAACTCAAAAATATTTCAAACCGAATTTTCCGGGGTTTAGAGTTT AGTACCGCCTCTGAAATTTTCGTGGTAGCCTAGTCTAACTATAAG i:14888260 original size:8 final size:7 Alignment explanation
Indices: 14888245--14888266 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 14888235 AAAAAAACAT 14888245 TATTTTC 1 TATTTTC 14888252 TAGTTTTC 1 TA-TTTTC 14888260 TATTTTC 1 TATTTTC 14888267 ACAAACTTAG Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 7 7 0.50 8 7 0.50 ACGTcount: A:0.14, C:0.14, G:0.05, T:0.68 Consensus pattern (7 bp): TATTTTC Left flanking sequence: Indices 14887745 -- 14888244 AAAGGTCGACGCCAGTTTTTTCAGGCAACTTTTGAGCAAACGGAGTTATTAGAAAATTTCCTTTG TAAAGTTTTTTCCAGTTTTTTCAAAATTGGTTTTTACAGAGATTTAAACAGAGGAGCACGTTAAA CTATAAAAAGTCGTTCTGCATATTTTTCAATTAATTTTTTATTATTTTCGAGACTCGTAAAATTG CTTCAAAAGTGGACTTCTGATTGCATCAAGGATGTTACCTTTAATTTTCAGATTTTTTTTTAGGG AATAAAACTTCCGGAAGACCATGCGAAATTTGAACTTCCAAGAAAAATAAAACAGCAACCTGAAA TGTGTTTTTTCCAATGGAAATTAAAATATAACGGGATCAGCGGAGTTCGAAATGTAGTATCTATT CTAAACTGTAATTTCAAGAAGACTATCCAAGGAAAAATTAAAAAACAGTTTCTTGTTTCGCGAGT GGCAGACTGTGTTTATATTGATTTCCAAACTTATCAAAAAAACAT Right flanking sequence: Indices 14888267 -- 14888766 ACAAACTTAGTTCTTATATAAAAAGTTTTCAAGAGTGTAAACAATTCAAAAAGATACAATGAGCA ATTATGTTGAGATAAATATGAAACAGTGACCGAAACTTTACCGGTTTTTCTGTGTGACTGACTAG AAAAGTCCCCTTGATTGAAAGTTCGTTTTTTACAATAAAAACAAAATTAATGCTTCAACATATTT ATGAAACAATCGGGTCATAAAAAATTAATTACTCTTTTGAGGTCCGCCTTGCCCAGATTGTCCAG ATTTTCCATTCCCACTGTTTCCATCAGTTCCAGCTATTTTTTGATTTCCTTGTCCATTTGGAGCA CCTCCAGAACCATTCGATGCAGTTGTTGCTTTTCCTCCATTCTTGTTCTCTCCACCATTTTGTTG TCCACCTTCCTTATTATTTTGAGCAGAAGCCACAACAAAAGCAACGATAAGAAGAACAATAGCTA GCTTTGAAGAAAACATTTTCAGAATTGAATTCAGAAACTGAGTGA Found at i:14888528 original size:9 final size:9 Alignment explanation
Indices: 14888510--14888534 Score: 36 Period size: 9 Copynumber: 2.8 Consensus size: 9 14888500 GAGGTCCGCC * 14888510 TTGCCCAGA 1 TTGTCCAGA 14888519 TTGTCCAGA 1 TTGTCCAGA * 14888528 TTTTCCA 1 TTGTCCA 14888535 TTCCCACTGT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36 Consensus pattern (9 bp): TTGTCCAGA Left flanking sequence: Indices 14888010 -- 14888509 AACTTCCGGAAGACCATGCGAAATTTGAACTTCCAAGAAAAATAAAACAGCAACCTGAAATGTGT TTTTTCCAATGGAAATTAAAATATAACGGGATCAGCGGAGTTCGAAATGTAGTATCTATTCTAAA CTGTAATTTCAAGAAGACTATCCAAGGAAAAATTAAAAAACAGTTTCTTGTTTCGCGAGTGGCAG ACTGTGTTTATATTGATTTCCAAACTTATCAAAAAAACATTATTTTCTAGTTTTCTATTTTCACA AACTTAGTTCTTATATAAAAAGTTTTCAAGAGTGTAAACAATTCAAAAAGATACAATGAGCAATT ATGTTGAGATAAATATGAAACAGTGACCGAAACTTTACCGGTTTTTCTGTGTGACTGACTAGAAA AGTCCCCTTGATTGAAAGTTCGTTTTTTACAATAAAAACAAAATTAATGCTTCAACATATTTATG AAACAATCGGGTCATAAAAAATTAATTACTCTTTTGAGGTCCGCC Right flanking sequence: Indices 14888535 -- 14889034 TTCCCACTGTTTCCATCAGTTCCAGCTATTTTTTGATTTCCTTGTCCATTTGGAGCACCTCCAGA ACCATTCGATGCAGTTGTTGCTTTTCCTCCATTCTTGTTCTCTCCACCATTTTGTTGTCCACCTT CCTTATTATTTTGAGCAGAAGCCACAACAAAAGCAACGATAAGAAGAACAATAGCTAGCTTTGAA GAAAACATTTTCAGAATTGAATTCAGAAACTGAGTGACCGATATTTCTAGTGAGACATCTATGGG CGTTTTATACCAAAAAACTGATGATGAACTGCATTGCAAATCTGATCAGGTACAGATAGGAGGAA AGTTCAACTAACAAAACATAGATGACAGATTTTTTTCATAACATGAGTAAGTATTATGAAAAAAC ATAGTGAAACTATTTTTATTTGAAGATATGAATAAAACATTCAACTGAGAGTTGTTTTTCAGCAA ATGCTCTACAGTTTCAATTTCAGAAGACGAACACAAAATACACAA Found at i:14891113 original size:10 final size:9 Alignment explanation
Indices: 14891100--14891118 Score: 29 Period size: 10 Copynumber: 2.0 Consensus size: 9 14891090 CCAAATTTAC 14891100 AGAAATAACG 1 AGAAA-AACG 14891110 AGAAAAACG 1 AGAAAAACG 14891119 TTAAATGGCC Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 9 4 0.44 10 5 0.56 ACGTcount: A:0.63, C:0.11, G:0.21, T:0.05 Consensus pattern (9 bp): AGAAAAACG Left flanking sequence: Indices 14890600 -- 14891099 CTGATCGCTCTGACTTTATCTCCATTGCCGGCTTTCCTTTTTGAGGGGGCTTTCGGCCACGGAAC ATTCGGATTGAGTCCTGTCTGAAAGTAGGATTTGACATGACTGACTTCATTTCTCAGCCAATTGA AAAATCTGTAGTTAGTAGTATTTGTAGCTTGTAGTCCATGATGTTACACCTCACACCAACTTCAC TCACACATCATTCCTTTGCTTCCTTTGACTAACCTCACTCCTTTTCTGATCGCGCTCTGATGGTC GTTCTGACACCTGTGTTTGTGATACTGAAATATCACTGTTTCCTCGTTGGGATTTTCGTTCTCTG AAAGTCAAGAATTCAGTCTGAAAACAAACAAAAAAAATTACCTTGAAGAGCCACGCTGTGCACAT GAAAAGATTGAAAGCAGAAGTAACGATGTGAATAATTGAAGACACTCTATGATTGTGATTTTGAA CGAATTGAGCATTTTATTGGAAATTTTACAAAGTGCCAAATTTAC Right flanking sequence: Indices 14891119 -- 14891618 TTAAATGGCCAAAACAAACTTTGACTTGTGAATTGTGACCTTTCGAGAAAAATAAAATAGCAACG TGAAATTCAGTTTTTCCAATGTGAATGATAGTACGACGGATTCAACGGTGAATTTTGGATCTACT TAAATAGGTAATTTTAAGAAAATTATAAAATTAAAGAGTTTGAATTTTATTACAGTTTCTCATAA ATTCTTTAGAAACTCTTTTTTAATTTGAGGACATATAGAGATGACAATCGTAGTAGAACGTCAGT TTTTTGAAAATAAACTTCAACGATTTTAAATTTAGTTGAAGATAAGAGAGCATATTGCAGATTTT TCTTTCAAAAAAATAATAACAAAATCCAAATGTTTGCCTATTACCAAGCATCGTTCAAATTATTG AAAACTTACAAAAACCACTTTTTGAGGCATACTATGGTCACCAAATAAATTAAAAAATGAACTCA AAAATATTTCAAACCGAATTTTCCGGGGTTTAGAGTTTAGTACCG Found at i:14891156 original size:7 final size:7 Alignment explanation
Indices: 14891140--14891156 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14891130 AAACAAACTT * 14891140 TGACTTG 1 TGAATTG 14891147 TGAATTG 1 TGAATTG 14891154 TGA 1 TGA 14891157 CCTTTCGAGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41 Consensus pattern (7 bp): TGAATTG Left flanking sequence: Indices 14890640 -- 14891139 TTGAGGGGGCTTTCGGCCACGGAACATTCGGATTGAGTCCTGTCTGAAAGTAGGATTTGACATGA CTGACTTCATTTCTCAGCCAATTGAAAAATCTGTAGTTAGTAGTATTTGTAGCTTGTAGTCCATG ATGTTACACCTCACACCAACTTCACTCACACATCATTCCTTTGCTTCCTTTGACTAACCTCACTC CTTTTCTGATCGCGCTCTGATGGTCGTTCTGACACCTGTGTTTGTGATACTGAAATATCACTGTT TCCTCGTTGGGATTTTCGTTCTCTGAAAGTCAAGAATTCAGTCTGAAAACAAACAAAAAAAATTA CCTTGAAGAGCCACGCTGTGCACATGAAAAGATTGAAAGCAGAAGTAACGATGTGAATAATTGAA GACACTCTATGATTGTGATTTTGAACGAATTGAGCATTTTATTGGAAATTTTACAAAGTGCCAAA TTTACAGAAATAACGAGAAAAACGTTAAATGGCCAAAACAAACTT Right flanking sequence: Indices 14891157 -- 14891656 CCTTTCGAGAAAAATAAAATAGCAACGTGAAATTCAGTTTTTCCAATGTGAATGATAGTACGACG GATTCAACGGTGAATTTTGGATCTACTTAAATAGGTAATTTTAAGAAAATTATAAAATTAAAGAG TTTGAATTTTATTACAGTTTCTCATAAATTCTTTAGAAACTCTTTTTTAATTTGAGGACATATAG AGATGACAATCGTAGTAGAACGTCAGTTTTTTGAAAATAAACTTCAACGATTTTAAATTTAGTTG AAGATAAGAGAGCATATTGCAGATTTTTCTTTCAAAAAAATAATAACAAAATCCAAATGTTTGCC TATTACCAAGCATCGTTCAAATTATTGAAAACTTACAAAAACCACTTTTTGAGGCATACTATGGT CACCAAATAAATTAAAAAATGAACTCAAAAATATTTCAAACCGAATTTTCCGGGGTTTAGAGTTT AGTACCGCCTCTGAAATTTTCGTGGTAGCCTAGTCTAACTATAAG Found at i:14893844 original size:10 final size:10 Alignment explanation
Indices: 14893825--14893845 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 14893815 ACGAATAAAA * 14893825 TGTTTGTATG 1 TGTGTGTATG 14893835 TGTGTGTATG 1 TGTGTGTATG 14893845 T 1 T 14893846 TGAATGATAG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.10, C:0.00, G:0.33, T:0.57 Consensus pattern (10 bp): TGTGTGTATG Left flanking sequence: Indices 14893325 -- 14893824 AATCTATTAAACACGTGAACCACTACCGCATGCACAAAAGGATGACGGACGCGAGCAGCCACGTG GTGACCTTTCCACGTCTACACCGACGACCACAAGACACGTGTACAACACCGCCCAACAGGAGATG CTCATCGAATCAGTCTTAACTTTTACTTACCTTTTGTTCTCCGTTCTTTTGTGTAGTCTACTAGA TCTTCGTCAATAAATACTTATAGAGTCACCGTTGTTCTGTTAGTTTAACATAGAAAATACCACTG AACGCACTGCAAAACAAATAAGGAGGAAATTTTCACTCAAATCACGATCAAATCGATCCCAACAA CTCTCCCAACAACACCTCAAGATGAATGCCATCTACACTGCCGTCCTTGTTGCTTCAACTCTCGC CTACACTGCAATGGCTTGGATTGGACTCAGCATTGAAGCCGCCAATGAGGATATGATTTGAAGTG GTACCCATAATAGAGTATAGGACATATTCCTCGTAACGAATAAAA Right flanking sequence: Indices 14893846 -- 14894345 TGAATGATAGATGATGTATCGCTATCCACCCGCCTTTGCACTCAACTTCCGATCCTAACGGCAAT GTGCGATTGTCGTCAGGGTGTTATTGAAAATGTGACAACTGGGGTGTAGAGAAAGTTAAACGGAA AATCATTTTATAAAATTTAGTTCCGCATTGAAAATACAGTTTCATTTTATAGAATAATTTATACT AAATCCCAGTTGCGTTTACAAGCTCTGGTGCGCGATAGGACAATTCGAACATACTTCCCTAAAAA AAACCAAGAATCACTTTCAAATATTTCTGAAAAAACCTTACATTATAAAGTTTTGCTTTAAAACC ACTTCTCTCTAGAGCAACAAAGATTACAGATGCTTGCATACCAGTGTTACATCCGACGAAAACCT GACTGGCAGAAGTAAGGCCAAGACTTGAAATCTGTTCGTCAACGTCTTGCTGACTAATAAATCCA TCTGGTCCAATTACTTTCGCCATTGGGAAATTTATTGCTCCAGTA Found at i:14894486 original size:8 final size:8 Alignment explanation
Indices: 14894470--14894487 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 14894460 CTGTGCCCGA * 14894470 ATCCTAGT 1 ATCCAAGT 14894478 ATCCAAGT 1 ATCCAAGT 14894486 AT 1 AT 14894488 ACAGTGTTAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33 Consensus pattern (8 bp): ATCCAAGT Left flanking sequence: Indices 14893970 -- 14894469 ACGGAAAATCATTTTATAAAATTTAGTTCCGCATTGAAAATACAGTTTCATTTTATAGAATAATT TATACTAAATCCCAGTTGCGTTTACAAGCTCTGGTGCGCGATAGGACAATTCGAACATACTTCCC TAAAAAAAACCAAGAATCACTTTCAAATATTTCTGAAAAAACCTTACATTATAAAGTTTTGCTTT AAAACCACTTCTCTCTAGAGCAACAAAGATTACAGATGCTTGCATACCAGTGTTACATCCGACGA AAACCTGACTGGCAGAAGTAAGGCCAAGACTTGAAATCTGTTCGTCAACGTCTTGCTGACTAATA AATCCATCTGGTCCAATTACTTTCGCCATTGGGAAATTTATTGCTCCAGTAACATGAGATCCTTT GGCTTCTGGAAGAGAATAATTTAGGGCACTTAAAGCACGAGAATAAGAAATCCCTACTGGTTCCT GGAAAATTGGTGGCAAGAGGATCTTCTCCATCAAACTGTGCCCGA Right flanking sequence: Indices 14894488 -- 14894987 ACAGTGTTAGTCTCCGCGAAATTATTAAATGGAATTTCTTCAAACTTTGCCAAAATTGTGTTGTC CAACGACTTGACATTGACGTTTCCAAGTTTTGGGGTGACAACGGCGTTGTCAGTTGGCCCTCCAG CAGCTTTCCAAACATCCATCCCTCCGTTCAGGAGGCTTACAGTTGTAAAACCATACATCTATAAG AATGACATTTTCTGACTGAAAGATATCATCATCGCATTTCCGTTTACAGAAAACTAAATAAACGC TGACTCTGTAACTACGTAAGAATGCTTCATCTGAAAAAAATTCAGAAAAAATCTACCTACAAACA CTGTTTTCGCATGTTTTGCAGTCATATTTGTGTTTTATTTTGGCTGAAAAAGTTCATGAAGTTTC TGGACTATTAGATAAATGTTCATGTTATTTTTCCAACGCTCTCTCATTTCAACTGCTGCCTCCAA AGTTCAATGCCATTGTTTCTCTCGCTCATTGATGACTCATGGTTT Found at i:14895252 original size:9 final size:9 Alignment explanation
Indices: 14895231--14895252 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 14895221 AGAGAAGTTG * 14895231 GAAAAAACG 1 GAAAAAACA * 14895240 GAAAAATCA 1 GAAAAAACA 14895249 GAAA 1 GAAA 14895253 GGACAAGACA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.68, C:0.09, G:0.18, T:0.05 Consensus pattern (9 bp): GAAAAAACA Left flanking sequence: Indices 14894731 -- 14895230 GAAAACTAAATAAACGCTGACTCTGTAACTACGTAAGAATGCTTCATCTGAAAAAAATTCAGAAA AAATCTACCTACAAACACTGTTTTCGCATGTTTTGCAGTCATATTTGTGTTTTATTTTGGCTGAA AAAGTTCATGAAGTTTCTGGACTATTAGATAAATGTTCATGTTATTTTTCCAACGCTCTCTCATT TCAACTGCTGCCTCCAAAGTTCAATGCCATTGTTTCTCTCGCTCATTGATGACTCATGGTTTTGC AAACATTACCAACTATGATCATCATCATGTATTTTGATATATAATGTCTAGATTTCATGAAAGAA AGTATCAATTTCATATTCACATTTTATCATGCTCTCCACTAAATTGGCAGGCCTTATTTTCCTTA TTGCACTTTCAGCAGCTGCTCCCCAGAAGAAAACTGATGTGACCAGATCTCCTCCATCTGAGAAA ACTGTCGAAAAAGAACAGATTGTCCCACAAAACTCAGAGAAGTTG Right flanking sequence: Indices 14895253 -- 14895752 GGACAAGACAGGCAAGACAATCTGGATTTGGTGGACAAAGTCAGCAATCTAGTGGATTCGGAGGA AGCAGCTCAAATGGAATGGGAAGTTCTAATAGTCAGGGAGGATTTGGGAACCAAGAAAGTCAGTC TTCATGGGAAACTCCAACAATCAGCGAAGCTTTGGAAATAAATAATGTGTTATTTCTTGCTTAAT TGATCCATTAAAATGTTTATTTATAATGATGTTTCCTACCTTGAAAGTCCAATAAGCTCTTGATG CAAACTTCATTCCAGAAGCTGGACCGTTACTGTAAATCACCAACTGATCTCCATTGTTCACTCCC AATAATCGTAGATACTTCTGAAAATGTTCTGGTGGATACAGATCATGCTTGATATATTCTGATGA GTAGCTGCCAATGTCTAGATCAAAGTGTACAGCTCCTGGAATGTGCTCATCCGTGTACAAATCGG GGCTTTTCTAAAAAAAAAGAAAGACATATTTTTGAATTTGGTTTG Found at i:14897269 original size:9 final size:9 Alignment explanation
Indices: 14897257--14897278 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 14897247 CAGAAAAAAG 14897257 GCAAGAAGA 1 GCAAGAAGA * 14897266 GCAAGAATA 1 GCAAGAAGA 14897275 GCAA 1 GCAA 14897279 CAACACCAAG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.55, C:0.14, G:0.27, T:0.05 Consensus pattern (9 bp): GCAAGAAGA Left flanking sequence: Indices 14896757 -- 14897256 TTCCGATATTTCTGATGGTAAGCAGTGGATCCTGAGAAAATATTAAAAAAAAGAGTTCTAATTAC AGAAAATATTGATTATTATTCTACATCTGACAAGGGAGATTACCGCGTTTATCGGTCCGCAAATG GTAAGGGAAACATTTTATATTAAAAAAGACCGCATTCCTGTTTCTCAAATGTTGTTAAGACTGAA AACAAATAAAACTCTGTTCTTGTTATATGTATTTAATTTTTTCAGATAATGAAACATCTTCTTCT GGTCCTTGCACCGATACAGTAATTTACAAACCAGTGGAATGGCCGTAAGTTAAAATTATATATTC ATCATGAAAGATTAATTTTTCAGATGGTACATGATTGCAGCCATTGCTGGACTATCAATTTTAAA TGTTCTTCTCATAATTGAAATTATTCGAATTGGCAGGAAATGGCTCAAACTGAGGAAAGAGTACG TACCTCTGAAAGGGACAAAGAAGGGGCTGAAAAACCAGAAAAAAG Right flanking sequence: Indices 14897279 -- 14897778 CAACACCAAGTCTACGGATAATACAGGCGATAATGCTCAACCGGATGAGCAGAAGCAACAAAAAC TGGAAAGCAAGGAAAACGTTCCGGATCAATTGATGTCAAAATGAGAGTTGTACCCCGGTTTTAAC AAAAACCGGAATAAACTGAATAAAATGTTATTTTATATGGTACACATTGAATTTTTCCGACGATG AGAGGCTTTTTATGGACATTTCTCATTTGGCAGTAAAACTGTTAAACAAAGGTATTTTCCAATAT TTATTGAATCAAATCTAGAAGTTGGCTACTTGTTTCTTGATTGTTCTAAACCTTCCACACCTACA CCTACCTAGCGTATACACTTGGGGTGGGAGGCGTATCTTTGCAAATCCACAAAACTGCCCAATCC GATATGACAATTCAATTTTTTGAAATGAAAAGGAATGTAGAAATATAGAAATATGGAAAATACTT AGTTTGAAATAACATCTATTGTTATTCAAAAAAACTAGAAAATAT Found at i:14897719 original size:8 final size:8 Alignment explanation
Indices: 14897702--14897727 Score: 38 Period size: 8 Copynumber: 3.2 Consensus size: 8 14897692 AATGAAAAGG * 14897702 AATGTAGA 1 AATATAGA 14897710 AATATAGA 1 AATATAGA * 14897718 AATATGGA 1 AATATAGA 14897726 AA 1 AA 14897728 ATACTTAGTT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 16 1.00 ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23 Consensus pattern (8 bp): AATATAGA Left flanking sequence: Indices 14897202 -- 14897701 AAAGAGTACGTACCTCTGAAAGGGACAAAGAAGGGGCTGAAAAACCAGAAAAAAGGCAAGAAGAG CAAGAATAGCAACAACACCAAGTCTACGGATAATACAGGCGATAATGCTCAACCGGATGAGCAGA AGCAACAAAAACTGGAAAGCAAGGAAAACGTTCCGGATCAATTGATGTCAAAATGAGAGTTGTAC CCCGGTTTTAACAAAAACCGGAATAAACTGAATAAAATGTTATTTTATATGGTACACATTGAATT TTTCCGACGATGAGAGGCTTTTTATGGACATTTCTCATTTGGCAGTAAAACTGTTAAACAAAGGT ATTTTCCAATATTTATTGAATCAAATCTAGAAGTTGGCTACTTGTTTCTTGATTGTTCTAAACCT TCCACACCTACACCTACCTAGCGTATACACTTGGGGTGGGAGGCGTATCTTTGCAAATCCACAAA ACTGCCCAATCCGATATGACAATTCAATTTTTTGAAATGAAAAGG Right flanking sequence: Indices 14897728 -- 14898227 ATACTTAGTTTGAAATAACATCTATTGTTATTCAAAAAAACTAGAAAATATTGTAAAAACTGGTT GAAAGATTATTCTGCTAATGGCAAATTTCCGGTAGTGATTGAAATCTTATCCAATTGTTTCAATG AAAATAAATGTTATTCGAGAACTACCGGTAGGCACGTAGGCATGAAAACGTTAATGTCTACCATT ATAAGACAAAAACATAACTTAAAATTCGAAAATGTTCTCTAATTGGCTTACACTCAAATTTGCCA TTTTATCGTTCATGCGACAATTTGTTAAGTGAGTGAAATCATGTTTTCAAACATCAAACAAATAA CTTATAGGAGGTTGAACATAGTCAATGAGATTCAGTTTTGTTTAAAAAACAGTTCCTACCTCTAG TTGACCCACAACTAAACGGGCACCTATTTGACCTGTATTTTCCTTTCACTCTAGACCCTCTCTCT ATCATCAAATAGTATATCACTTTCTCAGCCGTCTATGTCTCTCAC Found at i:14898046 original size:7 final size:7 Alignment explanation
Indices: 14898034--14898047 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14898024 AATCATGTTT 14898034 TCAAACA 1 TCAAACA 14898041 TCAAACA 1 TCAAACA 14898048 AATAACTTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14 Consensus pattern (7 bp): TCAAACA Left flanking sequence: Indices 14897534 -- 14898033 AATATTTATTGAATCAAATCTAGAAGTTGGCTACTTGTTTCTTGATTGTTCTAAACCTTCCACAC CTACACCTACCTAGCGTATACACTTGGGGTGGGAGGCGTATCTTTGCAAATCCACAAAACTGCCC AATCCGATATGACAATTCAATTTTTTGAAATGAAAAGGAATGTAGAAATATAGAAATATGGAAAA TACTTAGTTTGAAATAACATCTATTGTTATTCAAAAAAACTAGAAAATATTGTAAAAACTGGTTG AAAGATTATTCTGCTAATGGCAAATTTCCGGTAGTGATTGAAATCTTATCCAATTGTTTCAATGA AAATAAATGTTATTCGAGAACTACCGGTAGGCACGTAGGCATGAAAACGTTAATGTCTACCATTA TAAGACAAAAACATAACTTAAAATTCGAAAATGTTCTCTAATTGGCTTACACTCAAATTTGCCAT TTTATCGTTCATGCGACAATTTGTTAAGTGAGTGAAATCATGTTT Right flanking sequence: Indices 14898048 -- 14898547 AATAACTTATAGGAGGTTGAACATAGTCAATGAGATTCAGTTTTGTTTAAAAAACAGTTCCTACC TCTAGTTGACCCACAACTAAACGGGCACCTATTTGACCTGTATTTTCCTTTCACTCTAGACCCTC TCTCTATCATCAAATAGTATATCACTTTCTCAGCCGTCTATGTCTCTCACGCCCTGTCACATCTC TCAGTATTTTGCCATTTGAACGTGTTTCTTGCCAATTTCCTTTCCAACGTCTATTAAAACGCCAC AAAAAGTGTGTGCAACTTCAGTTACGTGAGTCTTATCAGGCTATCGACGCAAAATGTCTATAAAT TTTAATTCGAAACAGCACTCAGAAAACCGGCCAGTCTCATTTCAATTTTCCCTCGTTTTTCACTC TCAACCAACACGAAAATGATAAGTCTATTTTTCAAAAGGTGTGCACCTTTTTCGTCGTGTTCACT AACATTTTTGTCTGTCATTATTCTGTCAATTATTAACATTAACAT Found at i:14898565 original size:7 final size:7 Alignment explanation
Indices: 14898549--14898565 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14898539 CATTAACATA * 14898549 TCATCTG 1 TCAACTG 14898556 TCAACTG 1 TCAACTG 14898563 TCA 1 TCA 14898566 TCCTCTTGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35 Consensus pattern (7 bp): TCAACTG Left flanking sequence: Indices 14898049 -- 14898548 ATAACTTATAGGAGGTTGAACATAGTCAATGAGATTCAGTTTTGTTTAAAAAACAGTTCCTACCT CTAGTTGACCCACAACTAAACGGGCACCTATTTGACCTGTATTTTCCTTTCACTCTAGACCCTCT CTCTATCATCAAATAGTATATCACTTTCTCAGCCGTCTATGTCTCTCACGCCCTGTCACATCTCT CAGTATTTTGCCATTTGAACGTGTTTCTTGCCAATTTCCTTTCCAACGTCTATTAAAACGCCACA AAAAGTGTGTGCAACTTCAGTTACGTGAGTCTTATCAGGCTATCGACGCAAAATGTCTATAAATT TTAATTCGAAACAGCACTCAGAAAACCGGCCAGTCTCATTTCAATTTTCCCTCGTTTTTCACTCT CAACCAACACGAAAATGATAAGTCTATTTTTCAAAAGGTGTGCACCTTTTTCGTCGTGTTCACTA ACATTTTTGTCTGTCATTATTCTGTCAATTATTAACATTAACATA Right flanking sequence: Indices 14898566 -- 14899065 TCCTCTTGATTCTTATTTCAGAGCTATGAGTACAAACCCTATTGTCACTCCACAATGGTTGATGC AAAATGTCAATGTGAGTTTTTTTTTCAAGTTTTACCAAACTAGGAAATCTGCTTTCGAGAAAGGC TATGGCGTAAGATGGTGAAGAGGCGAGCAAGAGGCGCCTTTGACTCGCCTTGACCGCATGGAATT TCGTGTCAAAAATTATAATATTTTCAGAAAGTACGATTAATTGATGCTACGTATGCACCAACAGC CACTCGTGACTACAAGGAGTTCAAGACCAAATGTTACGGAAATTTTGATTTATTGACAAAAAATA ATGTACGTCTACTTACTAGGGAACCGTCAGAAGGTGCCCATCGGACTTGCATATGAGACCTATGC CATTCGATAGTGCATGTCTTAAAACGGTTACTCGTGAAATTTTAGCGGCAAAACTCCAGAACCAA GCTCACGGCGGGAAAATAGCACTGTAAGGAAGAAGTTTAACGATC Found at i:14900052 original size:9 final size:9 Alignment explanation
Indices: 14900034--14900069 Score: 65 Period size: 9 Copynumber: 4.0 Consensus size: 9 14900024 CTGATTGACT * 14900034 AGAGGATCC 1 AGAAGATCC 14900043 AGAAGATCC 1 AGAAGATCC 14900052 AGAAGATCC 1 AGAAGATCC 14900061 AGAAGATCC 1 AGAAGATCC 14900070 CATCTGTCCA Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 9 26 1.00 ACGTcount: A:0.42, C:0.22, G:0.25, T:0.11 Consensus pattern (9 bp): AGAAGATCC Left flanking sequence: Indices 14899534 -- 14900033 CATGGGCTATCGAATGGCATAGTTCTCATATACAAGTCCGATTGGCACCTTCTGACGGTTCCCTA GTTAGCTTTAAATTGACAAAACATTTTTAATTCCAGACTGTGGCTGCGTATACCGGAGAGCATAT TCCAGGAGCTGCACACTTTGGCCTTGACTCTGCCTATTTCCCATCGCAGTACATAAAATTTGATC TGTACCCGCCAGAGCATTTTGAAAAATATTTACGCTTGTTGGGAATCAACAATGACGAACAGGTG GTCATCTACAGCAGAGGTCCTGCCGCAGGAATGATGTTTGCCTCGAGAGCATATTGGACACTCAA GGTAGGAAAATTAATTTTGATTCTTAATTTTATTTGAGAACAGTGGGGCAATTAAGAAAAACAAA TGAAATTATTTTTTTCCAAAGTTTCTCTGAATATTGGAATTTCCCATGCCATTTGAACTGCTTCC TGATTGACCGGATGAACCCATTTGTCCGCCAAAACCTGATTGACT Right flanking sequence: Indices 14900070 -- 14900569 CATCTGTCCACCGAATCCTGACTGTCTTTGGTTATTTGATCCCATGCCGGAAGACTGACTTTCTT GGTTCCCAAATCCTCCCTGACTATTAGAACTTCCCATTCCATTTGAGCTGCTTCCTCCGAATCCA CTAGATTGCTGACTTTGTCCACCAAATCCAGATTGTCTTTCCTGTCTTGTCCTTTCTGATTTTTC CGTTTTTTCTAACTTCTCTGAGTTTTGTGGGACAATCTGTTCTTTTTCGACAGTTTTCTCAGATG GAGGAGGTCTGGTCACATTAGTTTTCTTCTGGGGAGCAGCTGTTGAAAGTGCAATAAGGAAAATA AGACCTGCTAATTTAGTGGAGAGCATGATAGAATGTGAATATGAAATTGATACTTTCTTTCATGA AATCTAGACATTATATACCCAAATGCATGATGATGATCATAGTTGGTAATGTTTGCAAATCCATT AGTCATCGATGAGCGAGAGACAATGGTATTGAACTTTGGAGGCAG Found at i:14902167 original size:9 final size:9 Alignment explanation
Indices: 14902155--14902175 Score: 35 Period size: 8 Copynumber: 2.4 Consensus size: 9 14902145 TTCAAATAAT 14902155 AATTTCAAA 1 AATTTCAAA 14902164 AA-TTCAAA 1 AATTTCAAA 14902172 AATT 1 AATT 14902176 GAACTTTGGA Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 8 8 0.73 9 3 0.27 ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33 Consensus pattern (9 bp): AATTTCAAA Left flanking sequence: Indices 14901655 -- 14902154 AATCTTGTATACTTGAAAACTTTCCCTGTTCATGGCAAACATTGACCCGATTTTGGAGCTACTTT AAACTTTTGCTAGTTGTCTTGGTCATGAATGGCAAAACACCGGTAAAAAAGATATAATAAGCATA GTTGGAACCCCCTACACATCCAATTAGCGTTTGATCAGAGCCTGCCAACAGTTTGGCGAACGTTT GTCATCTCGTTTTATATGTAAAAAAACGGCGAAACTTTGCTACTTCTTGGTAGTTTGAGAAATTG TTCGAGGGCCCTATAGTTGTATTGTACGTTCTATGGTAAATACGAATTCAATATTCATTTTCCCC AATCATACTGCAAATAAAAATACGAGTATGTACAAACATATCACCTTAACGCTAAGAAATATCAA TATTTTATACATCTGCTCTTGAAAAAGTGTCTACTAAATTTTGCGCCTTCATATTATCTAAATTC TAGGATTTAGAATCAATTTTTGAGCAACAAAATGTTTCAAATAAT Right flanking sequence: Indices 14902176 -- 14902675 GAACTTTGGAGTAAAAAAGAGAATATGGGAAACACAATTGACCTCTAATTGAAGTGAAATGTGCC GTTCTCCCAATCTCGAGGCAATCACCTTGAGAACGGTCGTCCCTTCCACTCATAAACCCCATTAT CTTTCCCGTTTGGTCTTACCTTGACACGTCTGCGTCTCTTATCTTTCTCTTGTATCTCCTTCTAA CTAACTGTTTCTTTCTCTTTTGAGCATGCTGTGAATGGAAAATAAAAGAATATTTAATATGCTAT AGCTCTGTTGCTATACATTTATTTTAACGTTCTGGAACAATGTGGCGGACTTTCTTTTTAATTTT AAATTTCATTTTTTATTGTGACTCTTCATGGATCAAAGATTTGAATCTACCTCGACAATTACTAG AATATCATATTTCATCAAACCCTAAATTTCGCCAAAAATGCATTGAAGATGAAAAGTGTTCAATT AATGTGAGGTTTCCCATAATTTCAGTTAAATATAATTTTAAGAGT Found at i:14902171 original size:8 final size:8 Alignment explanation
Indices: 14902158--14902175 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 14902148 AAATAATAAT 14902158 TTCAAAAA 1 TTCAAAAA 14902166 TTCAAAAA 1 TTCAAAAA 14902174 TT 1 TT 14902176 GAACTTTGGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33 Consensus pattern (8 bp): TTCAAAAA Left flanking sequence: Indices 14901658 -- 14902157 CTTGTATACTTGAAAACTTTCCCTGTTCATGGCAAACATTGACCCGATTTTGGAGCTACTTTAAA CTTTTGCTAGTTGTCTTGGTCATGAATGGCAAAACACCGGTAAAAAAGATATAATAAGCATAGTT GGAACCCCCTACACATCCAATTAGCGTTTGATCAGAGCCTGCCAACAGTTTGGCGAACGTTTGTC ATCTCGTTTTATATGTAAAAAAACGGCGAAACTTTGCTACTTCTTGGTAGTTTGAGAAATTGTTC GAGGGCCCTATAGTTGTATTGTACGTTCTATGGTAAATACGAATTCAATATTCATTTTCCCCAAT CATACTGCAAATAAAAATACGAGTATGTACAAACATATCACCTTAACGCTAAGAAATATCAATAT TTTATACATCTGCTCTTGAAAAAGTGTCTACTAAATTTTGCGCCTTCATATTATCTAAATTCTAG GATTTAGAATCAATTTTTGAGCAACAAAATGTTTCAAATAATAAT Right flanking sequence: Indices 14902176 -- 14902675 GAACTTTGGAGTAAAAAAGAGAATATGGGAAACACAATTGACCTCTAATTGAAGTGAAATGTGCC GTTCTCCCAATCTCGAGGCAATCACCTTGAGAACGGTCGTCCCTTCCACTCATAAACCCCATTAT CTTTCCCGTTTGGTCTTACCTTGACACGTCTGCGTCTCTTATCTTTCTCTTGTATCTCCTTCTAA CTAACTGTTTCTTTCTCTTTTGAGCATGCTGTGAATGGAAAATAAAAGAATATTTAATATGCTAT AGCTCTGTTGCTATACATTTATTTTAACGTTCTGGAACAATGTGGCGGACTTTCTTTTTAATTTT AAATTTCATTTTTTATTGTGACTCTTCATGGATCAAAGATTTGAATCTACCTCGACAATTACTAG AATATCATATTTCATCAAACCCTAAATTTCGCCAAAAATGCATTGAAGATGAAAAGTGTTCAATT AATGTGAGGTTTCCCATAATTTCAGTTAAATATAATTTTAAGAGT Found at i:14902505 original size:7 final size:7 Alignment explanation
Indices: 14902490--14902506 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14902480 GCGGACTTTC * 14902490 TTTTTAA 1 TTTTAAA 14902497 TTTTAAA 1 TTTTAAA 14902504 TTT 1 TTT 14902507 CATTTTTTAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): TTTTAAA Left flanking sequence: Indices 14901990 -- 14902489 CAAATAAAAATACGAGTATGTACAAACATATCACCTTAACGCTAAGAAATATCAATATTTTATAC ATCTGCTCTTGAAAAAGTGTCTACTAAATTTTGCGCCTTCATATTATCTAAATTCTAGGATTTAG AATCAATTTTTGAGCAACAAAATGTTTCAAATAATAATTTCAAAAATTCAAAAATTGAACTTTGG AGTAAAAAAGAGAATATGGGAAACACAATTGACCTCTAATTGAAGTGAAATGTGCCGTTCTCCCA ATCTCGAGGCAATCACCTTGAGAACGGTCGTCCCTTCCACTCATAAACCCCATTATCTTTCCCGT TTGGTCTTACCTTGACACGTCTGCGTCTCTTATCTTTCTCTTGTATCTCCTTCTAACTAACTGTT TCTTTCTCTTTTGAGCATGCTGTGAATGGAAAATAAAAGAATATTTAATATGCTATAGCTCTGTT GCTATACATTTATTTTAACGTTCTGGAACAATGTGGCGGACTTTC Right flanking sequence: Indices 14902507 -- 14903006 CATTTTTTATTGTGACTCTTCATGGATCAAAGATTTGAATCTACCTCGACAATTACTAGAATATC ATATTTCATCAAACCCTAAATTTCGCCAAAAATGCATTGAAGATGAAAAGTGTTCAATTAATGTG AGGTTTCCCATAATTTCAGTTAAATATAATTTTAAGAGTTTCAGCTTAACACTACCAGGTGCTTT GGCTTTGAGCCAGACTGTGATAAAATTAATTCTTTGAGGACCAGAAGTAAATTTACAAGTTGTGA GCAGAATCTGAATCCGTAAGAAACACCAGAAGAATAGTTTGTAATTAATTTTTGTTCTCAGAAAA GTTGCTGACCTATTTTTCAAGCAAGGGGATTTCGGATATTTGGAATCTCGATTGGTAAAACATGA TATTTGTACATCGGACCACGTGGTAAAATTTTAAGAAAAAAAAATTGAAAACAGGAAATTGTTTA AAATTTTCCAAATCAAGTTTCTAGAAAGTTTTTACAGTCGCTATC Found at i:14903878 original size:7 final size:7 Alignment explanation
Indices: 14903866--14903893 Score: 42 Period size: 7 Copynumber: 4.3 Consensus size: 7 14903856 AAATTATTTC 14903866 AATTCAG 1 AATTCAG 14903873 AATTCAG 1 AATTCAG 14903880 AA--CAG 1 AATTCAG 14903885 AATTCAG 1 AATTCAG 14903892 AA 1 AA 14903894 CAAAACAGAA Statistics Matches: 19, Mismatches: 0, Indels: 4 0.83 0.00 0.17 Matches are distributed among these distances: 5 5 0.26 7 14 0.74 ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21 Consensus pattern (7 bp): AATTCAG Left flanking sequence: Indices 14903366 -- 14903865 TTGTATCACCACTTTTGTGATTTCTTTAATTTATATGCAAGTCTTCATTTGAATCAGACATTTGA TCAAGATGTGGATATTATACTATGGGATACTGTGAGTTTTTAGTAGTTAAATGAACATACACTTT GAACCCAGGTTTCAGCACCCTGGCGGTTACAATGATCACTATTACGGTGTAACATGGAAGGCATT TTCCAAGAATCAGCCTTTCGAATTAAAGGAATTTGGTGAGATAGATCTGGAAAACAATTATTTAA TTTTTGGAACAATTTCAGATCAAAAAAAAGTGTGCTTCAAGCGTGTAATGATGCCACTTCTAGCT CGTCAGAGAACAGGGCTATTTTACAACAGCCCAGTTGTTGAAGGATGTTCTGGATCCAAGATGTT TAGGACGTTTTCTCAATTTATTTTGCATAGGTAAGTGAACAAAATACTAGCGTAAAATTAATAAA TTGAAGTTAAAATTTTAATAAAGTTTTTAGAAAAAAAATTATTTC Right flanking sequence: Indices 14903894 -- 14904393 CAAAACAGAAATTCAAGCGATCTTCTGAAAATGCTTCCGAAAAAGTTTGAAATATTTCAGATTAG GAATCAGACAACCAAAAGCTGATCTGGAAAAAGCCCGTATTGTAATATTATCAAGATCAACAGCG TTCCGCAAAATATTGAATATTAAAGAGGTCAGTTACACTTTTAATACAAGAAGATTTAGAATGTT TTGTTTAAATTTTCTCACCAAAAATTTGAGAATGCTGTGATTAATTGACCGAAATTCGAAAACTC GTAAAATTCACAAATGTTTATAGTTACATCAACTGGTTGTCAATAAGTGAAATCATGAAAGACTT TTCGGATAAAAATCGCTTTTGAAGATTAATTATTTCTTGATCCACCCGTTTGCACTCCAATTGAA GCATTGCTTGTCTCATCGTCACTTTGATCTCTGATTTGTCGAAGTTCGATTGGTACTAGGATTTT CTGAAAAAAAGCATTTAGTAGAGCGAAAGGATATAACAACTTTTA Found at i:14905642 original size:7 final size:7 Alignment explanation
Indices: 14905630--14905643 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14905620 TATTTCCAGA 14905630 ATTTTTT 1 ATTTTTT 14905637 ATTTTTT 1 ATTTTTT 14905644 TTGCCTAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): ATTTTTT Left flanking sequence: Indices 14905130 -- 14905629 TTATCCACTGCGCCACACTGGCCCAGCTTGCTGAACCGGAGTGAGGTGGGGTGACTTTGAGACAC GCCAATGACATCAGAAATGGTAGATTCGAAGATGCTTATTCTGGCATCAACTTTAGAACCGCGTA AGAATACTGAAACATGTTGTATTCCTACTTACCTAAATCTATTCATAAATACAATTCACTATATT GCCGATGAAAATTTCAAACAGTCTTTAATTACTGAAGAACCCACTTATTTCATCAACACATCAAA TGATTTTCAATTTTCGTAAAGAATATTGATATTTTCTCATCCATGTACCATTGCTTCAAACATAG ATAACTTTTTTCCTCATCAAGTTTTGCAATTCTTATTATCACTCGATCTTTTACTACGCGGATCT TTTACTGCGGCGATCTTTTACTACGATTCGCTGCGAGACCCGTGCCTTGTGGAGTACACTCGGAG GCAATTTCTTCCTTTTATTTTCGAATTTCTTCATTTATTTCCAGA Right flanking sequence: Indices 14905644 -- 14906143 TTGCCTAAAATAAATCTCTGATAAGGGAATGTTACACAAATGGCTCACTAGTGTCGACTGGGAGG AGATTATCGCCGGAAAAAGGTCAGTTGTTGTATAATTGTGCTGAAAAAATTTAGGATTTGAATCT TTTAAAATTAATTTTTATTTGAATTACAGATTCACTGAAGCTGACAGTGTCGATCCAGCTGTTCT TCACAACTTGTTGAATCAAAACAAGCTGATTGTGCGAATTCCATTAGAAGAAAATGGAGGGTTTC CATTTGATGGCCATGTCTGGTCAAAGAGTGATCCGAAGAATCGAATCAAGCATACTGCTCGTTAC GAAAAAGTTACCGTTTTCGGTGTCACTGTTAACAGCAGACAATGTATTGACTTTGATAATCGAAA CTTCTCTAGACACGTAAGGAAGTTTAAACTGACTACATAATCTAAGTTTTCATGCTTTCAGGTAC TTCCTTATAACGATTTCGTGTTTATTTATTATTGCATCCAAGACA Found at i:14906212 original size:7 final size:7 Alignment explanation
Indices: 14906200--14906217 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 14906190 AGGTATGAAT * 14906200 AAAAAGG 1 AAAAAGA 14906207 AAAAAGA 1 AAAAAGA 14906214 AAAA 1 AAAA 14906218 TAATCACTAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00 Consensus pattern (7 bp): AAAAAGA Left flanking sequence: Indices 14905700 -- 14906199 ACTGGGAGGAGATTATCGCCGGAAAAAGGTCAGTTGTTGTATAATTGTGCTGAAAAAATTTAGGA TTTGAATCTTTTAAAATTAATTTTTATTTGAATTACAGATTCACTGAAGCTGACAGTGTCGATCC AGCTGTTCTTCACAACTTGTTGAATCAAAACAAGCTGATTGTGCGAATTCCATTAGAAGAAAATG GAGGGTTTCCATTTGATGGCCATGTCTGGTCAAAGAGTGATCCGAAGAATCGAATCAAGCATACT GCTCGTTACGAAAAAGTTACCGTTTTCGGTGTCACTGTTAACAGCAGACAATGTATTGACTTTGA TAATCGAAACTTCTCTAGACACGTAAGGAAGTTTAAACTGACTACATAATCTAAGTTTTCATGCT TTCAGGTACTTCCTTATAACGATTTCGTGTTTATTTATTATTGCATCCAAGACAATAGCTACCAG TTGCCTGTTGACAATGGAAAGAAAAAGAGACTAACAGGTATGAAT Right flanking sequence: Indices 14906218 -- 14906717 TAATCACTAAAATGTGCTTCAGCTAAGGAATGTGAGATTCTTCGGACAATGGTGATCCCTCATCG TACAATCCACGGAGCAATGGAGGCAGCCAAAGCACTCGGAATCAATGTCACAGTGAGACAGGTTA GATTACTTTCATGAAAAATAAAAATAAATGTATTTTCCAGTTACAAACTTAAGCCGTGGCGTTCC GGATGCAATCATCGGAAATTCTGGCTCCAACGCCGCCACTACATTGGAAACAATTAGAGAACTGG AACGTCTGTATGGAACTAGAATGAATCATGCAGTTGGTGAGTGGAATTCGTATAACAATTTTGAA AAAAAAAAAATTCCAGATTCATACGGAGTTCTCGATGTTACATTCTTTCAATCATTTCCAGAGGC AATTAAAATCTTTTTATGTAGTTGTCCAGATATGAATGTTGTGCAAGACTGGAGGAGAAACGTCG AAAATATATGCGAAATGGACGGTGAAATGAGAAAGCGACAACTAA Found at