TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:19069390 original size:8 final size:8 Alignment explanation
Indices: 19069377--19069399 Score: 32 Period size: 8 Copynumber: 3.0 Consensus size: 8 19069367 GATTTTTTCA 19069377 AAAATTAT 1 AAAATTAT 19069385 AAAATT-T 1 AAAATTAT * 19069392 GAAATTAT 1 AAAATTAT 19069400 CGATTTTTAC Statistics Matches: 13, Mismatches: 1, Indels: 2 0.81 0.06 0.12 Matches are distributed among these distances: 7 6 0.46 8 7 0.54 ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39 Consensus pattern (8 bp): AAAATTAT Left flanking sequence: Indices 19068877 -- 19069376 ATTTCTCAGAATATCGATTTTCTGAAATTTCAGAAAATCGATTTTCTGAAATTTCACAAAATATC GATTTTTTGAAATTTCACAGAATATCGATTTTCTGAAATTTCACAAAATATCGAATTTCTGAAAT TTCACAAAATATCGATTTTTTGAAATTTCACAGAATATCGATTTTCTGAAATTTCACAAAATATC GAATTTCTGAAATTTCACAAAATATCGATTTTTTGAAATTTCGCAGAATATCGATTTTCTGAAAT TTCAGAAAATCGATTTTTTGAAATTTCACAAAAAATCGATTTTCTGAAATTTCTCAGAATATCGA TTTTCTGAAATTTCAGAAAATCGATTTTCTGAAATTTCACAAAATATCGATTTTTTGAAATTTCA CAGAATATCGAATTTCTGAAATTTCACAAAATATCGATTTTTTCAGAAAATTTTCAAAATATTGA GTTTTCAAAATTTAAAACTATCGATTTCTCAATTTGATTTTTTCA Right flanking sequence: Indices 19069400 -- 19069899 CGATTTTTACAGGAAGATGGAAAGTATGGAACTCTGGATTCTAACGTCGTGGAAAATGGTTTCTA CTCTGCCGATCATTAGGACTTTTATTGATTTTTTCTCATTAATTCATTGATTTTTTGTATTGTGA TGATCTCAATTTGAAAAAAAAAGAAATAAAATGCAATAATTATCGATTTTTTGAAATAAAGAATG TTTTTTTTTACAATTAAATTAATTAGAAACTCTTCACCTTATCGAATATTGTTATTCACAATTAA AAAAACGATAATCCGCAAGATTCATAAAATCGATAAATTTCAATTCGGTGGATTCTGACGGAGCT ACCGGCGGTCTGTGTTGTATGATGCTATTCCACTCTACGACATTACGCAATTCAATTTGCCGTGG GTTTTCGTAAATAGTGATGAAGAAATGAGGTTCAGTGAGGTATTTAAATGAATTTATTGATTTTT TTTAGAAAAAATCGATTTTTATTGATTTTAGAAAATTTACAAATA Found at i:19069560 original size:10 final size:10 Alignment explanation
Indices: 19069542--19069568 Score: 33 Period size: 10 Copynumber: 2.7 Consensus size: 10 19069532 ATCTCAATTT * 19069542 GAAAAAAAAA 1 GAAATAAAAA * 19069552 GAAATAAAAT 1 GAAATAAAAA * 19069562 GCAATAA 1 GAAATAA 19069569 TTATCGATTT Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.74, C:0.04, G:0.11, T:0.11 Consensus pattern (10 bp): GAAATAAAAA Left flanking sequence: Indices 19069042 -- 19069541 TATCGATTTTCTGAAATTTCACAAAATATCGAATTTCTGAAATTTCACAAAATATCGATTTTTTG AAATTTCGCAGAATATCGATTTTCTGAAATTTCAGAAAATCGATTTTTTGAAATTTCACAAAAAA TCGATTTTCTGAAATTTCTCAGAATATCGATTTTCTGAAATTTCAGAAAATCGATTTTCTGAAAT TTCACAAAATATCGATTTTTTGAAATTTCACAGAATATCGAATTTCTGAAATTTCACAAAATATC GATTTTTTCAGAAAATTTTCAAAATATTGAGTTTTCAAAATTTAAAACTATCGATTTCTCAATTT GATTTTTTCAAAAATTATAAAATTTGAAATTATCGATTTTTACAGGAAGATGGAAAGTATGGAAC TCTGGATTCTAACGTCGTGGAAAATGGTTTCTACTCTGCCGATCATTAGGACTTTTATTGATTTT TTCTCATTAATTCATTGATTTTTTGTATTGTGATGATCTCAATTT Right flanking sequence: Indices 19069569 -- 19070068 TTATCGATTTTTTGAAATAAAGAATGTTTTTTTTTACAATTAAATTAATTAGAAACTCTTCACCT TATCGAATATTGTTATTCACAATTAAAAAAACGATAATCCGCAAGATTCATAAAATCGATAAATT TCAATTCGGTGGATTCTGACGGAGCTACCGGCGGTCTGTGTTGTATGATGCTATTCCACTCTACG ACATTACGCAATTCAATTTGCCGTGGGTTTTCGTAAATAGTGATGAAGAAATGAGGTTCAGTGAG GTATTTAAATGAATTTATTGATTTTTTTTAGAAAAAATCGATTTTTATTGATTTTAGAAAATTTA CAAATAATCAATTTTCGAATGTTCAAGCATATTCTCGAATTTTCAAGTTCAGTACTGAATTCCTT CGAACTAGACTCCAAAATTGTCTGAAAACACCGAATTTCATACTGAAAACTTTTCAAAAAAAAAG TTGAATTTCCCGCGAAAATATTTTTGAAGGGTTTCACCATGATGG Found at i:19070102 original size:9 final size:9 Alignment explanation
Indices: 19070085--19070102 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 19070075 CTCGAATATT * 19070085 CAAGCCAAC 1 CAAGACAAC 19070094 CAAGACAAC 1 CAAGACAAC 19070103 AAACGTGCAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.50, C:0.39, G:0.11, T:0.00 Consensus pattern (9 bp): CAAGACAAC Left flanking sequence: Indices 19069585 -- 19070084 ATAAAGAATGTTTTTTTTTACAATTAAATTAATTAGAAACTCTTCACCTTATCGAATATTGTTAT TCACAATTAAAAAAACGATAATCCGCAAGATTCATAAAATCGATAAATTTCAATTCGGTGGATTC TGACGGAGCTACCGGCGGTCTGTGTTGTATGATGCTATTCCACTCTACGACATTACGCAATTCAA TTTGCCGTGGGTTTTCGTAAATAGTGATGAAGAAATGAGGTTCAGTGAGGTATTTAAATGAATTT ATTGATTTTTTTTAGAAAAAATCGATTTTTATTGATTTTAGAAAATTTACAAATAATCAATTTTC GAATGTTCAAGCATATTCTCGAATTTTCAAGTTCAGTACTGAATTCCTTCGAACTAGACTCCAAA ATTGTCTGAAAACACCGAATTTCATACTGAAAACTTTTCAAAAAAAAAGTTGAATTTCCCGCGAA AATATTTTTGAAGGGTTTCACCATGATGGGCTCGGCTCGAATATT Right flanking sequence: Indices 19070103 -- 19070602 AAACGTGCATCGAGAAGACACGAGAGTTGCGCCAACTCACCGAAAATTCGTTATAGGCAGTATTG CATTTATTAAAAAGGTTTTCATTAAGCTGAAAACACTTAATTAATTTTTATCAAATATGAATCAA AATTCACAAAGTTATTGAGGTATCCAGAAACGCGCCAAGGCACCAAAAATGCGTCAACTCACTGA AAAAGCGCCATAGTCGATATTATACTTATTTGAAAGCTCTCATCGAGCTAAACTCAAAAATAAAT ATCACATTCTTTTTCTCCGTACATAAAACGAAAAAATTTCCAGTTGTTGTATTTTCAAAATATTG GTAGATCGCCACGCAACACGCGACGCACGCTAAACATTTCGAGCTCTGAAAACACTAAAATTGCG TCGCAACGCCACCAAAGTTGTGATTTGAGCCACTAAAAGGATCAGAGCTGTACGGTTCATTTCAA AGTTATTTGATTTATTAAGGTATCGAGAATTGCGTCAAGGACCTA Found at i:19071203 original size:9 final size:8 Alignment explanation
Indices: 19071189--19071208 Score: 31 Period size: 9 Copynumber: 2.4 Consensus size: 8 19071179 TTCAAGCGTC 19071189 TTCTTCTAT 1 TTCTTCT-T 19071198 TTCTTCTT 1 TTCTTCTT 19071206 TTC 1 TTC 19071209 AATTCCAGCC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 4 0.36 9 7 0.64 ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70 Consensus pattern (8 bp): TTCTTCTT Left flanking sequence: Indices 19070689 -- 19071188 TTTGTCGAGTATGAATGAAAACTCCCGAAGTTACGGCTATATCGCGAAACGCGCCAAGGCACGAG AATTGCGCCAACTCACCGAAAAGGCTTCATATGCAATATTATGTTTATTGTAAAGTTTTTATCAA GCTTTATCAAATATGAATCAAAATTCACGAATTTATTGAGGTATCCAGAAACGCGTCAAGGCACC ATTAATGCGCCAATGGATAACATTAAACTTATTTAGAAGCTTTTTGATGAGCTGAACACTTATGT TCATTCAAATTCGGAGAAAAACCCAGCAAGATATGCATGTTTCGAGCAACGCGTCAAGGCACCAG AAATGCGTCAACTCACTGAAAAAGCGCCATAGTCGATATTATACTTATTTGAAAGCTCTCATCGA GCTAAACTCAAAAATCAATACGTCATTCTTCTCCTCTGTACAGAAAACAAAAAATTTCACAAAAT ATTCATCATTGAATTCAATACAAAAATCGTTCAAATTCAAGCGTC Right flanking sequence: Indices 19071209 -- 19071708 AATTCCAGCCAATCTCTTGTTAACGTTGGCCAATTCTTCCTTATTCTCGTTAGACTTCTTCTCAT CACACAATGCATCCGAATACTTGCTGATTCTGTCAAGTGCCTCCAACCGTTTGACTACATCATTG AACATTGCCATTTGCTGATCGTAAATCTTCATGTCAAATCCATATTCCTTGATAAGACGGTACAT GGTTCCCAGTGTCATCCAGTACAGCTGAGAATTGGTCTGAACTCCATTCCAACGATGCTCGTGCA AGTGTTTCAGAGCTTCAGTAAGTTCGATTGTCGGATCGGCTTCAACTTGACGGGCAAGGTACTCG GTTCCGATGAAGGCCATGGATCTTCCAATTCCATTTGAACAATGCACCACGATTGGCTTCTGAAT ATCGATTTTATTCAATATTGAAGACCATCGATATTTATTGATTTTCAAAAAAAGTTCTATCGATT TGTTACAGATTTATCAATGTTTTGAATAAAAAATCTAGTTTTTGT Found at i:19072197 original size:9 final size:9 Alignment explanation
Indices: 19072183--19072200 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 19072173 ACATCTGCAG 19072183 AAATCGATA 1 AAATCGATA 19072192 AAATCGATA 1 AAATCGATA 19072201 GTTGTCGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22 Consensus pattern (9 bp): AAATCGATA Left flanking sequence: Indices 19071683 -- 19072182 TTTTGAATAAAAAATCTAGTTTTTGTAATTATCGATTTTTCAAAAATCCAACCTCGCTTTTCTTG ACCATTTCCATCAGCTCATATGTTTCAACATGACTCTTGGGAACACCACGTTCAGCCCATTGCGA ATATTGATAGTGCGTCAGAGTTCTCGCCGCAAATTTTCCGCTGGAAATAAGGAAAGTTGTTTTTC GAAACGAAACATGGAAATACTCACGTTGAATCGGCAACTTTGAAGGATCTTCGCATAATGTTCTT TTGCACAATAAAATCCATATTTGTCATCTTGATCATGAACCGTCCGACTTGCAAATCATTTCTCG GCCACATAGGAAGATAGTCGTTGTGAATGTTTTTCCAATATTCAACTTTTCGACCAACCATCACA ATATGCTCAACTTCGTATTGCATGCACATTGCCCAAAAATCTTCACATGTCGCATTGATGGGACT CTGTAACACGGCAAGGAATATTGATGTTCAACAAAACATCTGCAG Right flanking sequence: Indices 19072201 -- 19072700 GTTGTCGAAAAATCAATAATTCTCCCATTTTGCGCATCGATAAAGCATACTCTTGTGAGCAATGG TAAACACCCTACTCAAAAAATATAGGTTATACCTGAGTAGCAATGAAGCGATGTGGATGACCAGG TGTCGGAACCCAGTTGGCATGAATTGGGGCCCGTTTCCCATCGACAATCACCTCTACAGCGGTTG ATGGCTTACATGGTACAGTGGGATATCTGGAATAAGACTTAAAAATGATAGAATTGACTATAAAT AAAAATAAGGATACCTGTGCTTATCCTCCGGCAAGTATGCATACGACTCAGTAATATGATCCTTA TCAATCGTTGTCACATTTACATTTTCGATCGTCGTATTGTAGAATTTGGCCGGTTTATGATCATC CTTGTTAGGCAGACTCATGGTCCATAATTCGACCTTCTTTACCTTCAACAGTTTCTCTGCCTCAT TGTCCATTTCTTTCTGCTTACGTCGGGCTTCCGATCTGTCTTTCC Found at i:19072817 original size:8 final size:8 Alignment explanation
Indices: 19072801--19072817 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 19072791 CTTCTGCGGA 19072801 TTTGATCT 1 TTTGATCT * 19072809 TTTGCTCT 1 TTTGATCT 19072817 T 1 T 19072818 CAGCCTTCAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.06, C:0.18, G:0.12, T:0.65 Consensus pattern (8 bp): TTTGATCT Left flanking sequence: Indices 19072301 -- 19072800 AGTAGCAATGAAGCGATGTGGATGACCAGGTGTCGGAACCCAGTTGGCATGAATTGGGGCCCGTT TCCCATCGACAATCACCTCTACAGCGGTTGATGGCTTACATGGTACAGTGGGATATCTGGAATAA GACTTAAAAATGATAGAATTGACTATAAATAAAAATAAGGATACCTGTGCTTATCCTCCGGCAAG TATGCATACGACTCAGTAATATGATCCTTATCAATCGTTGTCACATTTACATTTTCGATCGTCGT ATTGTAGAATTTGGCCGGTTTATGATCATCCTTGTTAGGCAGACTCATGGTCCATAATTCGACCT TCTTTACCTTCAACAGTTTCTCTGCCTCATTGTCCATTTCTTTCTGCTTACGTCGGGCTTCCGAT CTGTCTTTCCTTTCCTGATTTTCTGCATTCAGCATGGCAATCTTTTCCTGACCCTCCTTGACTTT CTTGGCGTCTTCAGCTCTTTCCTTCCGTCGCTCTTCTTCTGCGGA Right flanking sequence: Indices 19072818 -- 19073317 CAGCCTTCACCTTCTCTTTTTCTATTTTCACTTTCTCTTCCTCAGCCTTCAGCCTTTCCTCTTCA GCTTTCACTTTTTCCTTATTCCTTTCCTTTTCCACCTTCACCTTCTCTTCTTCTGCCTTGAGCCG TTCCTCTTCTTTTTTCACTTTTTCCCTTTCTGCCTTGACTCTTTCTTCCTCTTCTTTTATCGCTC TCATCCTCTCTCTTTCAGCAATCAGCTTCTCGTTCTCTTCTTCAGCTTCTTTCTCTTTACGCTTC TCCTCTCTTTTACGATACCAAATAAAGACTATTCCACCAATCACGAGAGCAACAAGTATCAAGAC CACAGGAATGACAACGAAAAGTCTGAAATTGAACATGATTAGTGTCGCAGTAAATAGAATTTTGC GCCAAAATTTTGTTTCTAACAAAATTTCAATGTCCCGCCAAAATTTTTTTTTCAGGAAACTTGAA TTTTGTGTCAAAATGAATTTAACTGTTTAAAACAACTCACATCGG Found at i:19072845 original size:8 final size:8 Alignment explanation
Indices: 19072829--19072845 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 19072819 AGCCTTCACC * 19072829 TTCTCTTT 1 TTCTATTT 19072837 TTCTATTT 1 TTCTATTT 19072845 T 1 T 19072846 CACTTTCTCT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76 Consensus pattern (8 bp): TTCTATTT Left flanking sequence: Indices 19072329 -- 19072828 GGTGTCGGAACCCAGTTGGCATGAATTGGGGCCCGTTTCCCATCGACAATCACCTCTACAGCGGT TGATGGCTTACATGGTACAGTGGGATATCTGGAATAAGACTTAAAAATGATAGAATTGACTATAA ATAAAAATAAGGATACCTGTGCTTATCCTCCGGCAAGTATGCATACGACTCAGTAATATGATCCT TATCAATCGTTGTCACATTTACATTTTCGATCGTCGTATTGTAGAATTTGGCCGGTTTATGATCA TCCTTGTTAGGCAGACTCATGGTCCATAATTCGACCTTCTTTACCTTCAACAGTTTCTCTGCCTC ATTGTCCATTTCTTTCTGCTTACGTCGGGCTTCCGATCTGTCTTTCCTTTCCTGATTTTCTGCAT TCAGCATGGCAATCTTTTCCTGACCCTCCTTGACTTTCTTGGCGTCTTCAGCTCTTTCCTTCCGT CGCTCTTCTTCTGCGGATTTGATCTTTTGCTCTTCAGCCTTCACC Right flanking sequence: Indices 19072846 -- 19073345 CACTTTCTCTTCCTCAGCCTTCAGCCTTTCCTCTTCAGCTTTCACTTTTTCCTTATTCCTTTCCT TTTCCACCTTCACCTTCTCTTCTTCTGCCTTGAGCCGTTCCTCTTCTTTTTTCACTTTTTCCCTT TCTGCCTTGACTCTTTCTTCCTCTTCTTTTATCGCTCTCATCCTCTCTCTTTCAGCAATCAGCTT CTCGTTCTCTTCTTCAGCTTCTTTCTCTTTACGCTTCTCCTCTCTTTTACGATACCAAATAAAGA CTATTCCACCAATCACGAGAGCAACAAGTATCAAGACCACAGGAATGACAACGAAAAGTCTGAAA TTGAACATGATTAGTGTCGCAGTAAATAGAATTTTGCGCCAAAATTTTGTTTCTAACAAAATTTC AATGTCCCGCCAAAATTTTTTTTTCAGGAAACTTGAATTTTGTGTCAAAATGAATTTAACTGTTT AAAACAACTCACATCGGAAAATCACTTGACTCATCGCTAACAGTG Found at i:19072871 original size:7 final size:7 Alignment explanation
Indices: 19072859--19072873 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 19072849 TTTCTCTTCC 19072859 TCAGCCT 1 TCAGCCT 19072866 TCAGCCT 1 TCAGCCT 19072873 T 1 T 19072874 TCCTCTTCAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.40, G:0.13, T:0.33 Consensus pattern (7 bp): TCAGCCT Left flanking sequence: Indices 19072359 -- 19072858 GCCCGTTTCCCATCGACAATCACCTCTACAGCGGTTGATGGCTTACATGGTACAGTGGGATATCT GGAATAAGACTTAAAAATGATAGAATTGACTATAAATAAAAATAAGGATACCTGTGCTTATCCTC CGGCAAGTATGCATACGACTCAGTAATATGATCCTTATCAATCGTTGTCACATTTACATTTTCGA TCGTCGTATTGTAGAATTTGGCCGGTTTATGATCATCCTTGTTAGGCAGACTCATGGTCCATAAT TCGACCTTCTTTACCTTCAACAGTTTCTCTGCCTCATTGTCCATTTCTTTCTGCTTACGTCGGGC TTCCGATCTGTCTTTCCTTTCCTGATTTTCTGCATTCAGCATGGCAATCTTTTCCTGACCCTCCT TGACTTTCTTGGCGTCTTCAGCTCTTTCCTTCCGTCGCTCTTCTTCTGCGGATTTGATCTTTTGC TCTTCAGCCTTCACCTTCTCTTTTTCTATTTTCACTTTCTCTTCC Right flanking sequence: Indices 19072874 -- 19073373 TCCTCTTCAGCTTTCACTTTTTCCTTATTCCTTTCCTTTTCCACCTTCACCTTCTCTTCTTCTGC CTTGAGCCGTTCCTCTTCTTTTTTCACTTTTTCCCTTTCTGCCTTGACTCTTTCTTCCTCTTCTT TTATCGCTCTCATCCTCTCTCTTTCAGCAATCAGCTTCTCGTTCTCTTCTTCAGCTTCTTTCTCT TTACGCTTCTCCTCTCTTTTACGATACCAAATAAAGACTATTCCACCAATCACGAGAGCAACAAG TATCAAGACCACAGGAATGACAACGAAAAGTCTGAAATTGAACATGATTAGTGTCGCAGTAAATA GAATTTTGCGCCAAAATTTTGTTTCTAACAAAATTTCAATGTCCCGCCAAAATTTTTTTTTCAGG AAACTTGAATTTTGTGTCAAAATGAATTTAACTGTTTAAAACAACTCACATCGGAAAATCACTTG ACTCATCGCTAACAGTGCTCACAGTGCTCGATCCAACAGCAGCAG Found at i:19072904 original size:7 final size:7 Alignment explanation
Indices: 19072890--19072906 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 19072880 TCAGCTTTCA * 19072890 CTTTTTC 1 CTTATTC 19072897 CTTATTC 1 CTTATTC 19072904 CTT 1 CTT 19072907 TCCTTTTCCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65 Consensus pattern (7 bp): CTTATTC Left flanking sequence: Indices 19072390 -- 19072889 CGGTTGATGGCTTACATGGTACAGTGGGATATCTGGAATAAGACTTAAAAATGATAGAATTGACT ATAAATAAAAATAAGGATACCTGTGCTTATCCTCCGGCAAGTATGCATACGACTCAGTAATATGA TCCTTATCAATCGTTGTCACATTTACATTTTCGATCGTCGTATTGTAGAATTTGGCCGGTTTATG ATCATCCTTGTTAGGCAGACTCATGGTCCATAATTCGACCTTCTTTACCTTCAACAGTTTCTCTG CCTCATTGTCCATTTCTTTCTGCTTACGTCGGGCTTCCGATCTGTCTTTCCTTTCCTGATTTTCT GCATTCAGCATGGCAATCTTTTCCTGACCCTCCTTGACTTTCTTGGCGTCTTCAGCTCTTTCCTT CCGTCGCTCTTCTTCTGCGGATTTGATCTTTTGCTCTTCAGCCTTCACCTTCTCTTTTTCTATTT TCACTTTCTCTTCCTCAGCCTTCAGCCTTTCCTCTTCAGCTTTCA Right flanking sequence: Indices 19072907 -- 19073406 TCCTTTTCCACCTTCACCTTCTCTTCTTCTGCCTTGAGCCGTTCCTCTTCTTTTTTCACTTTTTC CCTTTCTGCCTTGACTCTTTCTTCCTCTTCTTTTATCGCTCTCATCCTCTCTCTTTCAGCAATCA GCTTCTCGTTCTCTTCTTCAGCTTCTTTCTCTTTACGCTTCTCCTCTCTTTTACGATACCAAATA AAGACTATTCCACCAATCACGAGAGCAACAAGTATCAAGACCACAGGAATGACAACGAAAAGTCT GAAATTGAACATGATTAGTGTCGCAGTAAATAGAATTTTGCGCCAAAATTTTGTTTCTAACAAAA TTTCAATGTCCCGCCAAAATTTTTTTTTCAGGAAACTTGAATTTTGTGTCAAAATGAATTTAACT GTTTAAAACAACTCACATCGGAAAATCACTTGACTCATCGCTAACAGTGCTCACAGTGCTCGATC CAACAGCAGCAGCTGCTCCAGTACCTGTTCCACTTCCAGTCGGTC Found at i:19072971 original size:8 final size:8 Alignment explanation
Indices: 19072958--19072976 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 19072948 TTCCTCTTCT 19072958 TTTTTCAC 1 TTTTTCAC * 19072966 TTTTTCCC 1 TTTTTCAC 19072974 TTT 1 TTT 19072977 CTGCCTTGAC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.05, C:0.26, G:0.00, T:0.68 Consensus pattern (8 bp): TTTTTCAC Left flanking sequence: Indices 19072458 -- 19072957 AATAAAAATAAGGATACCTGTGCTTATCCTCCGGCAAGTATGCATACGACTCAGTAATATGATCC TTATCAATCGTTGTCACATTTACATTTTCGATCGTCGTATTGTAGAATTTGGCCGGTTTATGATC ATCCTTGTTAGGCAGACTCATGGTCCATAATTCGACCTTCTTTACCTTCAACAGTTTCTCTGCCT CATTGTCCATTTCTTTCTGCTTACGTCGGGCTTCCGATCTGTCTTTCCTTTCCTGATTTTCTGCA TTCAGCATGGCAATCTTTTCCTGACCCTCCTTGACTTTCTTGGCGTCTTCAGCTCTTTCCTTCCG TCGCTCTTCTTCTGCGGATTTGATCTTTTGCTCTTCAGCCTTCACCTTCTCTTTTTCTATTTTCA CTTTCTCTTCCTCAGCCTTCAGCCTTTCCTCTTCAGCTTTCACTTTTTCCTTATTCCTTTCCTTT TCCACCTTCACCTTCTCTTCTTCTGCCTTGAGCCGTTCCTCTTCT Right flanking sequence: Indices 19072977 -- 19073476 CTGCCTTGACTCTTTCTTCCTCTTCTTTTATCGCTCTCATCCTCTCTCTTTCAGCAATCAGCTTC TCGTTCTCTTCTTCAGCTTCTTTCTCTTTACGCTTCTCCTCTCTTTTACGATACCAAATAAAGAC TATTCCACCAATCACGAGAGCAACAAGTATCAAGACCACAGGAATGACAACGAAAAGTCTGAAAT TGAACATGATTAGTGTCGCAGTAAATAGAATTTTGCGCCAAAATTTTGTTTCTAACAAAATTTCA ATGTCCCGCCAAAATTTTTTTTTCAGGAAACTTGAATTTTGTGTCAAAATGAATTTAACTGTTTA AAACAACTCACATCGGAAAATCACTTGACTCATCGCTAACAGTGCTCACAGTGCTCGATCCAACA GCAGCAGCTGCTCCAGTACCTGTTCCACTTCCAGTCGGTCCAGTACCAGTATCACCACTCGGACC ACCACTACCATTACCATTGCCAGTACCTCCTGTATTGACACCACC Found at i:19073354 original size:9 final size:9 Alignment explanation
Indices: 19073336--19073357 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 19073326 TTGACTCATC * 19073336 GCTAACAGT 1 GCTCACAGT 19073345 GCTCACAGT 1 GCTCACAGT 19073354 GCTC 1 GCTC 19073358 GATCCAACAG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23 Consensus pattern (9 bp): GCTCACAGT Left flanking sequence: Indices 19072836 -- 19073335 TTTCTATTTTCACTTTCTCTTCCTCAGCCTTCAGCCTTTCCTCTTCAGCTTTCACTTTTTCCTTA TTCCTTTCCTTTTCCACCTTCACCTTCTCTTCTTCTGCCTTGAGCCGTTCCTCTTCTTTTTTCAC TTTTTCCCTTTCTGCCTTGACTCTTTCTTCCTCTTCTTTTATCGCTCTCATCCTCTCTCTTTCAG CAATCAGCTTCTCGTTCTCTTCTTCAGCTTCTTTCTCTTTACGCTTCTCCTCTCTTTTACGATAC CAAATAAAGACTATTCCACCAATCACGAGAGCAACAAGTATCAAGACCACAGGAATGACAACGAA AAGTCTGAAATTGAACATGATTAGTGTCGCAGTAAATAGAATTTTGCGCCAAAATTTTGTTTCTA ACAAAATTTCAATGTCCCGCCAAAATTTTTTTTTCAGGAAACTTGAATTTTGTGTCAAAATGAAT TTAACTGTTTAAAACAACTCACATCGGAAAATCACTTGACTCATC Right flanking sequence: Indices 19073358 -- 19073857 GATCCAACAGCAGCAGCTGCTCCAGTACCTGTTCCACTTCCAGTCGGTCCAGTACCAGTATCACC ACTCGGACCACCACTACCATTACCATTGCCAGTACCTCCTGTATTGACACCACCACTATTACTCT GAGGATTTGGAGGAGGAACACTGATTGTCTGTTGAGAAGCAAAGAACAATTGCAAAAAGTTATCA AACGACTGGAATGCTGATGGAACATTCTGAAATTGTGTTGAATGACTTGAGAACTGCAAATCCAA CACGGCAATCTTTTCGAGAGTTTCTTTGACGGCAAGTAGATCAGATTTAGTGTATCTTTTCTTTC TTCGTTTCACAGAGGATGCAACAAGTGAACCGATCAATATCTCCAGTGCTTTCGACTTCTTTACT GCATCAATCTGGACATCAGGAATTGAAGCCAAGTTCTTCAAAGGTGTACTGTAGCTGGAAAGTGT GTGAACATTTGATACATCAATCTTTGACAGGAAATCCTTAGACTT Found at i:19076448 original size:7 final size:7 Alignment explanation
Indices: 19076436--19076453 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 19076426 AGCAACCGCG 19076436 ACGCGAC 1 ACGCGAC 19076443 ACGCGAC 1 ACGCGAC * 19076450 GCGC 1 ACGC 19076454 CCAAAAATTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.22, C:0.44, G:0.33, T:0.00 Consensus pattern (7 bp): ACGCGAC Left flanking sequence: Indices 19075936 -- 19076435 ACGTGAAAAAAAATCGATAATCATTTTTGAAAAGTCGATAATTTTTCTTGAAAAATCAATAATTT TTCTTGAAAAAATCAATAATTTTTTGTTGAAAAATCGATATTTTTGTGAAAATCGATAATTTAGT TTGGCCTGTGCACGCCAGTGCCAGTGGCCAACGCGCGAGAAATTCGCATATTACGGTAAGTTACA TAGGCGACCACGACGCGACACGCGCCGCACCCAAAAATTATGAAAAACTGTAACTCAGCTGCCAA TGAAGCTAGAGCTTCGCAAATTTTTGTTCAGGTAATTAAATTACCGCGCAACGCGTTGAAACTAT TTATCTACCTTGGCACAATTCTCGTGCCTTGGCGCTTTTCTCGATCACTCCAAAAAATAATAAAT ACTTGAGCAATAAATTGAAAACAGCGTATTACGGTTGCACAAACAATTTCAGAACTCTACGACCA TTCTGAGCAAAGTTACAAAAGATTTAATTTTCAAAAGCAACCGCG Right flanking sequence: Indices 19076454 -- 19076953 CCAAAAATTATGAAAAATTGCAACTCAGTTGCCAATGAAGCTAGAGCTATGAAAATTTTTGTGTA CACTTTTGCTACATTGCTTAGAGTTTTGCAACTGTTTATGTACCTTGGCGCAATTATCGTAGGTA ACATACCTTTTACAGAAACATTCGAGTTCGCTGGGCCAAGTGTGGTGCCGTTGAAGGAATACAGC TTGCAGAACATAAGAAGTAGTACTGAAAATATCGATTGTTTTGTACTTCTGAAAGATTACCCAGA CTTACCGGTTTTGAATATCAAAAAAATATTCATCTTGCTTCGCTTCAGTTACCAATTCAATATTT GCTGTGAAGTTATCGATTATCGATTGAAGACTGATTGATTTGTTGTTTTTTGATGATTACAATTC AAAGGTCAATGGGGGGTAATACGTTGGCAATCACGTGAGGTCATTATTTATTTTTATTCTCAACT TTTGAAAATTTCATATTTTTCCCGTGTTTTTTCTAATTTTTTTAA Found at i:19076800 original size:7 final size:7 Alignment explanation
Indices: 19076788--19076803 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 19076778 TGCTGTGAAG 19076788 TTATCGA 1 TTATCGA 19076795 TTATCGA 1 TTATCGA 19076802 TT 1 TT 19076804 GAAGACTGAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50 Consensus pattern (7 bp): TTATCGA Left flanking sequence: Indices 19076288 -- 19076787 CTTGGCGCTTTTCTCGATCACTCCAAAAAATAATAAATACTTGAGCAATAAATTGAAAACAGCGT ATTACGGTTGCACAAACAATTTCAGAACTCTACGACCATTCTGAGCAAAGTTACAAAAGATTTAA TTTTCAAAAGCAACCGCGACGCGACACGCGACGCGCCCAAAAATTATGAAAAATTGCAACTCAGT TGCCAATGAAGCTAGAGCTATGAAAATTTTTGTGTACACTTTTGCTACATTGCTTAGAGTTTTGC AACTGTTTATGTACCTTGGCGCAATTATCGTAGGTAACATACCTTTTACAGAAACATTCGAGTTC GCTGGGCCAAGTGTGGTGCCGTTGAAGGAATACAGCTTGCAGAACATAAGAAGTAGTACTGAAAA TATCGATTGTTTTGTACTTCTGAAAGATTACCCAGACTTACCGGTTTTGAATATCAAAAAAATAT TCATCTTGCTTCGCTTCAGTTACCAATTCAATATTTGCTGTGAAG Right flanking sequence: Indices 19076804 -- 19077303 GAAGACTGATTGATTTGTTGTTTTTTGATGATTACAATTCAAAGGTCAATGGGGGGTAATACGTT GGCAATCACGTGAGGTCATTATTTATTTTTATTCTCAACTTTTGAAAATTTCATATTTTTCCCGT GTTTTTTCTAATTTTTTTAAATTTCCGGTAAAAGTTCATTTTTAGAAGTTTCAGGGGGGGGGGGG GGGCACGTGAAGTCATTTTTCGGAAAAAAACAATTTTTATTATAAAATTTGGAAAAATCAATAAA TTCATTAATTTTTTAGTTGGAAGAATCGTGCCTGCCCTACCTACATGCCTACCTCATGCCAGCAT AACTACGTACCTTCCTATTGCTCCCATACTTTATGCCTTGCATATATATATCTAGTGCCTACTTC ATACCTGCCTACCTCATGCCTACCGGCAAAAAATACCTACCCATAGGCCTAGTCTAGCTCAGAAA TTTTTTTCCAACAATTCTGGTTGTTAGTTTTGCTGAAATTTTTTT Found at i:19076948 original size:9 final size:9 Alignment explanation
Indices: 19076936--19076957 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 19076926 TTTCCCGTGT 19076936 TTTTTCTAA 1 TTTTTCTAA * 19076945 TTTTTTTAA 1 TTTTTCTAA * 19076954 ATTT 1 TTTT 19076958 CCGGTAAAAG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73 Consensus pattern (9 bp): TTTTTCTAA Left flanking sequence: Indices 19076436 -- 19076935 ACGCGACACGCGACGCGCCCAAAAATTATGAAAAATTGCAACTCAGTTGCCAATGAAGCTAGAGC TATGAAAATTTTTGTGTACACTTTTGCTACATTGCTTAGAGTTTTGCAACTGTTTATGTACCTTG GCGCAATTATCGTAGGTAACATACCTTTTACAGAAACATTCGAGTTCGCTGGGCCAAGTGTGGTG CCGTTGAAGGAATACAGCTTGCAGAACATAAGAAGTAGTACTGAAAATATCGATTGTTTTGTACT TCTGAAAGATTACCCAGACTTACCGGTTTTGAATATCAAAAAAATATTCATCTTGCTTCGCTTCA GTTACCAATTCAATATTTGCTGTGAAGTTATCGATTATCGATTGAAGACTGATTGATTTGTTGTT TTTTGATGATTACAATTCAAAGGTCAATGGGGGGTAATACGTTGGCAATCACGTGAGGTCATTAT TTATTTTTATTCTCAACTTTTGAAAATTTCATATTTTTCCCGTGT Right flanking sequence: Indices 19076958 -- 19077457 CCGGTAAAAGTTCATTTTTAGAAGTTTCAGGGGGGGGGGGGGGGCACGTGAAGTCATTTTTCGGA AAAAAACAATTTTTATTATAAAATTTGGAAAAATCAATAAATTCATTAATTTTTTAGTTGGAAGA ATCGTGCCTGCCCTACCTACATGCCTACCTCATGCCAGCATAACTACGTACCTTCCTATTGCTCC CATACTTTATGCCTTGCATATATATATCTAGTGCCTACTTCATACCTGCCTACCTCATGCCTACC GGCAAAAAATACCTACCCATAGGCCTAGTCTAGCTCAGAAATTTTTTTCCAACAATTCTGGTTGT TAGTTTTGCTGAAATTTTTTTCGAACAAATCTCACAAATTATCGATTTTTTATTAAAATTTCACA AATTATCGATTTTTTTTGAAATTTTTGAAATTATTGATTTTTTTGAAATTCCACAAATTATTGAT TTTTTGAAATTTCTTAAATTATTAATTTTTTTGAAATTTCACAAA Found at i:19076956 original size:10 final size:10 Alignment explanation
Indices: 19076935--19076957 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 19076925 TTTTCCCGTG * 19076935 TTTTTTCTAA 1 TTTTTTCAAA * 19076945 TTTTTTTAAA 1 TTTTTTCAAA 19076955 TTT 1 TTT 19076958 CCGGTAAAAG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74 Consensus pattern (10 bp): TTTTTTCAAA Left flanking sequence: Indices 19076435 -- 19076934 GACGCGACACGCGACGCGCCCAAAAATTATGAAAAATTGCAACTCAGTTGCCAATGAAGCTAGAG CTATGAAAATTTTTGTGTACACTTTTGCTACATTGCTTAGAGTTTTGCAACTGTTTATGTACCTT GGCGCAATTATCGTAGGTAACATACCTTTTACAGAAACATTCGAGTTCGCTGGGCCAAGTGTGGT GCCGTTGAAGGAATACAGCTTGCAGAACATAAGAAGTAGTACTGAAAATATCGATTGTTTTGTAC TTCTGAAAGATTACCCAGACTTACCGGTTTTGAATATCAAAAAAATATTCATCTTGCTTCGCTTC AGTTACCAATTCAATATTTGCTGTGAAGTTATCGATTATCGATTGAAGACTGATTGATTTGTTGT TTTTTGATGATTACAATTCAAAGGTCAATGGGGGGTAATACGTTGGCAATCACGTGAGGTCATTA TTTATTTTTATTCTCAACTTTTGAAAATTTCATATTTTTCCCGTG Right flanking sequence: Indices 19076958 -- 19077457 CCGGTAAAAGTTCATTTTTAGAAGTTTCAGGGGGGGGGGGGGGGCACGTGAAGTCATTTTTCGGA AAAAAACAATTTTTATTATAAAATTTGGAAAAATCAATAAATTCATTAATTTTTTAGTTGGAAGA ATCGTGCCTGCCCTACCTACATGCCTACCTCATGCCAGCATAACTACGTACCTTCCTATTGCTCC CATACTTTATGCCTTGCATATATATATCTAGTGCCTACTTCATACCTGCCTACCTCATGCCTACC GGCAAAAAATACCTACCCATAGGCCTAGTCTAGCTCAGAAATTTTTTTCCAACAATTCTGGTTGT TAGTTTTGCTGAAATTTTTTTCGAACAAATCTCACAAATTATCGATTTTTTATTAAAATTTCACA AATTATCGATTTTTTTTGAAATTTTTGAAATTATTGATTTTTTTGAAATTCCACAAATTATTGAT TTTTTGAAATTTCTTAAATTATTAATTTTTTTGAAATTTCACAAA Found at i:19079252 original size:10 final size:10 Alignment explanation
Indices: 19079237--19079257 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 19079227 ACAATTGATT 19079237 TATTTCAAAA 1 TATTTCAAAA * 19079247 TATTTCAGAA 1 TATTTCAAAA 19079257 T 1 T 19079258 TCCAGGATTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43 Consensus pattern (10 bp): TATTTCAAAA Left flanking sequence: Indices 19078737 -- 19079236 GAATTATCAATTTTTTTGAAATTTCACAAATTATCGATTTTTTGAAATTTCACAAATTATTGATT TTTTGAAATTTCACAAATTATTGATTTTTTGAAATTTCACAAATTATCGATTTTTTGAAATTTCA CAAATTATTGATTTTTTGAAATTTCACAAATTATCGTTTTTTTTTGAAATTTCTTAAAATATTGA TTTTTTGAAATTTCACAAATTATTGATTTTTTGAAATTTCTTAAATTATTGATTTTTTTGAAATT TCACGAATTATCGATTTGTTTGAAATTTCACAAATTATCGATTTTTTTGAAATTTCACAAATTAT CGATTTTTTTTTGAAATTTCTTAAAATATTGATTTTTTTGAAAATATTGATATTTTTTCTTAAAA TATTGATTTTTCGCTTTTCTCGTGCAAACACCAAAACCGTGTAAAAATATTTTATTTTTCCAGAG AACGGCCACAAAAGTTGCACACTTCATTATCCACGACAATTGATT Right flanking sequence: Indices 19079258 -- 19079757 TCCAGGATTTCAGCCGATTTGGGTGACTTTTTTGAACTTTTCCGTGATTGGCTTCCATGTGAATT TGGACGGCTTCATCTTCTTCAAGACAATCAATTTTTCGATATTTTTTCAAAATTTCCATTGTCAA ATTGTGAAGCTTTTCTGAAAAAAAAATGTTTTTGGAAATTTTCAGAATTATCGATTTTTCGTACT CGTACCTTCATTTTCAAAAGTTCCTTGAAAATAGAAATCCGCCAGAAATCGCTGGGGAACCACAT TTTCCATGTGAAATTTTCGAAAGTCTGCTAGGTTTTTCTCCAGTTTTCTGTGATCGTTCGGATGG AGGTTGAGAACTGAAAAAAAAACAAATTATTGATTTTTTAATACACAAAAATCGATAATTACCAT ATTTCTCTAAAAGTTCGTCATATGGCTTGTCGATAAAAATTCGGTATTGAAAATTTTGGAATTTC GTCGATTTTTGAACTGGCGTGATATAGAATTTGGGGCCCGGGAGT Found at i:19080209 original size:7 final size:7 Alignment explanation
Indices: 19080197--19080210 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19080187 TTTGATAAGC 19080197 GTCGCGT 1 GTCGCGT 19080204 GTCGCGT 1 GTCGCGT 19080211 CGCGGTCGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.29, G:0.43, T:0.29 Consensus pattern (7 bp): GTCGCGT Left flanking sequence: Indices 19079697 -- 19080196 AAAATTTTGGAATTTCGTCGATTTTTGAACTGGCGTGATATAGAATTTGGGGCCCGGGAGTTGTT GGGCAAGCTTTTGGCATAGGATTTTCTGAAAATAAGAAGTGTATTAAGAAATGCGCCAGGACGTC AAAGATGGGCACAAAAAATTTCAGAACACTGGTGCCACGGCGAACAAAGTTACAGCTAACCAAAA TTTTTGGCAAGCGTGGCGTGTCACGTCGCGGTTGCCTATGAAAATTTAAACTTTTGTAGTTTTTC TCAAAATAGTCATAGAGCGTTGAAATCTGTTGTATTACCTAAATACACCGTTTTCAACTTATTGG TTAAACATTGGTAAATTTCGGGAGTGATCGAGAAATGCGCCAAGGCACGAGAATTGCGTCAAGGC ACAAAACAGCGGCAAACTTATAAGCGTTGTATCTAAAACGTACACAAAAATTTTCAAAGCGCTAT ATCCATTGGCAGCTGAGTTACAGTATTTCACAATTTTTGATAAGC Right flanking sequence: Indices 19080211 -- 19080710 CGCGGTCGTCCAAAAAACTTCAAATCCGTGTAACTTTGCTTCAAGTAGCCGTAGAGCCTTGAAAT TTTTTGTGCTACCGTAATACGCCGTTTTCAGCTTATTGGTCAAACATTGATCATTTTCGGGGATG ATTGCGAAATGCGCCAAGGCACGAGATATGCGTCAAGGCACAAAAACATTGGCAATACTATAGGC GTTGTATTTAAAACGTACACAAAATTTTTCAAAGCGCTATCTCCATTGGCAGCTGAGTTACAGTC CTTCATAATTTTTGGTAAGCGTCGCGTGTCGCGTCGCGGTCTATACATGAATTTCAAACCTCCGC AATTATGCTTAAATTGATCGTAGAGTTCTCAAACTTTTTGTGTGAAGTATACACTCAATTTTTAA CGATTTAAACCGAAAAGTGTGCATTGGCGCATTTCTCGTGCCTTGGCGCATTTTTCGTGAGCACA CTCACCTTTCCAGATCCAATTCCACCGAATATTCCAACCAAAAAT Found at i:19080503 original size:7 final size:7 Alignment explanation
Indices: 19080491--19080504 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19080481 TTTGGTAAGC 19080491 GTCGCGT 1 GTCGCGT 19080498 GTCGCGT 1 GTCGCGT 19080505 CGCGGTCTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.29, G:0.43, T:0.29 Consensus pattern (7 bp): GTCGCGT Left flanking sequence: Indices 19079991 -- 19080490 TTACCTAAATACACCGTTTTCAACTTATTGGTTAAACATTGGTAAATTTCGGGAGTGATCGAGAA ATGCGCCAAGGCACGAGAATTGCGTCAAGGCACAAAACAGCGGCAAACTTATAAGCGTTGTATCT AAAACGTACACAAAAATTTTCAAAGCGCTATATCCATTGGCAGCTGAGTTACAGTATTTCACAAT TTTTGATAAGCGTCGCGTGTCGCGTCGCGGTCGTCCAAAAAACTTCAAATCCGTGTAACTTTGCT TCAAGTAGCCGTAGAGCCTTGAAATTTTTTGTGCTACCGTAATACGCCGTTTTCAGCTTATTGGT CAAACATTGATCATTTTCGGGGATGATTGCGAAATGCGCCAAGGCACGAGATATGCGTCAAGGCA CAAAAACATTGGCAATACTATAGGCGTTGTATTTAAAACGTACACAAAATTTTTCAAAGCGCTAT CTCCATTGGCAGCTGAGTTACAGTCCTTCATAATTTTTGGTAAGC Right flanking sequence: Indices 19080505 -- 19081004 CGCGGTCTATACATGAATTTCAAACCTCCGCAATTATGCTTAAATTGATCGTAGAGTTCTCAAAC TTTTTGTGTGAAGTATACACTCAATTTTTAACGATTTAAACCGAAAAGTGTGCATTGGCGCATTT CTCGTGCCTTGGCGCATTTTTCGTGAGCACACTCACCTTTCCAGATCCAATTCCACCGAATATTC CAACCAAAAATTGATGATTTTTTGTCATGAGGAGTTTTATTACAAAAAACCAAGCAAAATACGAA AACTGCCAAGAAAACTGAGAAAATTGGCACTAGGAGGTGCTGACTGAGAGGGGGAGGGGGAAGAA GCTTCTCCCCATAATTAGCTTTCAATTCTCATGGGGACTGGAAGGTGTGTGCTCTTGGATAATTG AAAATACAAGAATTTACATTTTTCTGTAAAATATTCGAGGAAAAAAAAATTGAGTTTTTGCAACT TTAAAAAAATTTGAAAAAAAATCCAAAAAAAAATTTTGTTGAAAA Found at i:19080978 original size:10 final size:10 Alignment explanation
Indices: 19080959--19080978 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 19080949 TTTTTGCAAC 19080959 TTTAAAAAAA 1 TTTAAAAAAA * 19080969 TTTGAAAAAA 1 TTTAAAAAAA 19080979 AATCCAAAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30 Consensus pattern (10 bp): TTTAAAAAAA Left flanking sequence: Indices 19080459 -- 19080958 TGAGTTACAGTCCTTCATAATTTTTGGTAAGCGTCGCGTGTCGCGTCGCGGTCTATACATGAATT TCAAACCTCCGCAATTATGCTTAAATTGATCGTAGAGTTCTCAAACTTTTTGTGTGAAGTATACA CTCAATTTTTAACGATTTAAACCGAAAAGTGTGCATTGGCGCATTTCTCGTGCCTTGGCGCATTT TTCGTGAGCACACTCACCTTTCCAGATCCAATTCCACCGAATATTCCAACCAAAAATTGATGATT TTTTGTCATGAGGAGTTTTATTACAAAAAACCAAGCAAAATACGAAAACTGCCAAGAAAACTGAG AAAATTGGCACTAGGAGGTGCTGACTGAGAGGGGGAGGGGGAAGAAGCTTCTCCCCATAATTAGC TTTCAATTCTCATGGGGACTGGAAGGTGTGTGCTCTTGGATAATTGAAAATACAAGAATTTACAT TTTTCTGTAAAATATTCGAGGAAAAAAAAATTGAGTTTTTGCAAC Right flanking sequence: Indices 19080979 -- 19081478 AATCCAAAAAAAAATTTTGTTGAAAAATTGGATTTTTCAATCAATAATAGTTTCAAACAAAATAT TAATTGTTTTATTCACAAATTATTAACACAAAAATTTCATTCCTAGTGAAACCCAGAATCCAGGA ACATTTCTGGGTGTGAGAATTCCAATTTCAGTACTCCAAAACAGCGTATAAGTTGCATGCGTTCT CGTCCTTTTCGAATATTTTCCTAGAAAAAAGTTATGTGGACGGTTAAATATATATTTACAATATC GATTTTTTGAAAAATTTGAAAAAAAAAGTTTTTTGGCCTACCTGAATCGAATTATTGACTTGCAT CATTTTTGCCAATCTTCCTGCATATCTCAACATCCCCAAATCCTTTATATAATAGTCATGTAGAT CATTCGATAAAACCGTCAAAAATCGATCGCAAACTTCCAAAATCCGGCCCTGATATCGATTTCCT GCATATTGGAAGCACAACTGAGCCAGCATATAGGTTAACTCAATA Found at i:19081256 original size:9 final size:9 Alignment explanation
Indices: 19081244--19081261 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 19081234 ATATCGATTT 19081244 TTTGAAAAA 1 TTTGAAAAA 19081253 TTTGAAAAA 1 TTTGAAAAA 19081262 AAAAGTTTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33 Consensus pattern (9 bp): TTTGAAAAA Left flanking sequence: Indices 19080744 -- 19081243 AAAAACCAAGCAAAATACGAAAACTGCCAAGAAAACTGAGAAAATTGGCACTAGGAGGTGCTGAC TGAGAGGGGGAGGGGGAAGAAGCTTCTCCCCATAATTAGCTTTCAATTCTCATGGGGACTGGAAG GTGTGTGCTCTTGGATAATTGAAAATACAAGAATTTACATTTTTCTGTAAAATATTCGAGGAAAA AAAAATTGAGTTTTTGCAACTTTAAAAAAATTTGAAAAAAAATCCAAAAAAAAATTTTGTTGAAA AATTGGATTTTTCAATCAATAATAGTTTCAAACAAAATATTAATTGTTTTATTCACAAATTATTA ACACAAAAATTTCATTCCTAGTGAAACCCAGAATCCAGGAACATTTCTGGGTGTGAGAATTCCAA TTTCAGTACTCCAAAACAGCGTATAAGTTGCATGCGTTCTCGTCCTTTTCGAATATTTTCCTAGA AAAAAGTTATGTGGACGGTTAAATATATATTTACAATATCGATTT Right flanking sequence: Indices 19081262 -- 19081761 AAAAGTTTTTTGGCCTACCTGAATCGAATTATTGACTTGCATCATTTTTGCCAATCTTCCTGCAT ATCTCAACATCCCCAAATCCTTTATATAATAGTCATGTAGATCATTCGATAAAACCGTCAAAAAT CGATCGCAAACTTCCAAAATCCGGCCCTGATATCGATTTCCTGCATATTGGAAGCACAACTGAGC CAGCATATAGGTTAACTCAATATCAGTAGGTGATAAGTCGTACAATGCCTGGGTGACGTCATATT GGTCACATGAAGAGTGGATCATGAATCTGGAAGGGATCGAGAATTGCGTCAAGGCACCGGAAATG CGCCAGCATTTCAAAGTTTTTCTGTTTAGACAGTTCTGAGTCTAGCAACCTAACAATTATGTGAT TTGGTCAAAAACGACAGAAAATACGGCGGTATCGAAAAGTGCGTCAAGGCACCGAAAATGCGCCA TAGCTAATATTATACTCATTTGAAAACTCTCGACAAGCCAAATTC Found at i:19081920 original size:8 final size:8 Alignment explanation
Indices: 19081907--19081922 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 19081897 TTGATGAGCC 19081907 AAACTTAA 1 AAACTTAA 19081915 AAACTTAA 1 AAACTTAA 19081923 GTGATTAATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25 Consensus pattern (8 bp): AAACTTAA Left flanking sequence: Indices 19081407 -- 19081906 AAAATCCGGCCCTGATATCGATTTCCTGCATATTGGAAGCACAACTGAGCCAGCATATAGGTTAA CTCAATATCAGTAGGTGATAAGTCGTACAATGCCTGGGTGACGTCATATTGGTCACATGAAGAGT GGATCATGAATCTGGAAGGGATCGAGAATTGCGTCAAGGCACCGGAAATGCGCCAGCATTTCAAA GTTTTTCTGTTTAGACAGTTCTGAGTCTAGCAACCTAACAATTATGTGATTTGGTCAAAAACGAC AGAAAATACGGCGGTATCGAAAAGTGCGTCAAGGCACCGAAAATGCGCCATAGCTAATATTATAC TCATTTGAAAACTCTCGACAAGCCAAATTCAAAAAAATAAGTAATTAATAAATTCTGCCAAAAAT GAACAAAATATGCCTGCATCGAGAATTGCGCCAAGGCACCGAAAATGCGTCAGCGCACTGAAAAT GCGCTATAGCTGATATTATACTCATTTAAAAGCTCTTGATGAGCC Right flanking sequence: Indices 19081923 -- 19082422 GTGATTAATAATTTCGGCCAAAAATGAACAGAATTTGACAGTATCGAGAGTTGCGCCAAGGCACC GAAAATGCGCTAAATCAAGTTCGTTATTATTCAATACTTTGAGAAAAAAAATCAAATCGACAGCG CCACTGGAAACAAACTTACAGCTTGTCAAAACATGAGCCATGCGGCGCGGTCGCGTCGCGGTCGC TTGGCAAACTATAAAGCTTTATAACTTGGCTCAAAATTGTTTTATTGAGTTGAGATTGTTCGTGC ATGATTCAAATTTAATGTTCAACAATTGGCAAAAAATTTGAACTCTTTACGCATTTCCGGTGACT TGGCGCATTTCTCGATACTGCCATATTTTTGTCATTTTTAGTCCAATTTCGAATATTTTACAAGT TATTAGTTCAGTTCTTTAAAAGCTTCAATATGATATTAATATAAGCAGTGACGCACTTTTCGTGC GCTGACGCATTTTCGGTGCCTTGGCGCATTTCTCGATCCCTCCGT Found at i:19082457 original size:7 final size:7 Alignment explanation
Indices: 19082445--19082458 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19082435 TTTTAGTCTG 19082445 AATTTTT 1 AATTTTT 19082452 AATTTTT 1 AATTTTT 19082459 CCGCTTTTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): AATTTTT Left flanking sequence: Indices 19081945 -- 19082444 AATGAACAGAATTTGACAGTATCGAGAGTTGCGCCAAGGCACCGAAAATGCGCTAAATCAAGTTC GTTATTATTCAATACTTTGAGAAAAAAAATCAAATCGACAGCGCCACTGGAAACAAACTTACAGC TTGTCAAAACATGAGCCATGCGGCGCGGTCGCGTCGCGGTCGCTTGGCAAACTATAAAGCTTTAT AACTTGGCTCAAAATTGTTTTATTGAGTTGAGATTGTTCGTGCATGATTCAAATTTAATGTTCAA CAATTGGCAAAAAATTTGAACTCTTTACGCATTTCCGGTGACTTGGCGCATTTCTCGATACTGCC ATATTTTTGTCATTTTTAGTCCAATTTCGAATATTTTACAAGTTATTAGTTCAGTTCTTTAAAAG CTTCAATATGATATTAATATAAGCAGTGACGCACTTTTCGTGCGCTGACGCATTTTCGGTGCCTT GGCGCATTTCTCGATCCCTCCGTATTTTTGCTCATTTTTAGTCTG Right flanking sequence: Indices 19082459 -- 19082958 CCGCTTTTTGTGTTCTGTACAACATAATCTTTACAAAACACCTACCTTCTAAACTGCTCCAGCGG AAAATTGCTCAGCCACCTGGTATCCATATATACATGTTCTACGTCCACAACGATGTCGCCCTGAA GCACAACATCGGTTTTCTTATAGCTTTGAGCAGTTTTTCGGTATTTAGCAGTTGCTGATAATTTT TCAAGACGGCTCCAAATATGCCATATAGATTGGAGAAGCTTCATCTGGAAATTTGAAAATTTTTC AAGAAAAAACTGATTTTTTTGGAAATTTTTTTGGAAATTTTTTTTTGAAATTTTCAAAATTTGAT AACTACGTGAATTTTCAATTTTACAGGCTGGTTTTTATTTTAAAATGTAGAAAAAAGATTTTTTG AGAAAACATTTAAAAATGAGCAAAATCGGTCAAAAAACTACAGTACCCCAGGAGTTTTTGTGGCG GGAGCCCCAACAAGAAAACTGAAAATTTCAAAAATTTTCAAAATC Found at i:19082954 original size:10 final size:10 Alignment explanation
Indices: 19082935--19082956 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 19082925 AAGAAAACTG 19082935 AAAATTTCAA 1 AAAATTTCAA * 19082945 AAATTTTCAA 1 AAAATTTCAA 19082955 AA 1 AA 19082957 TCCCATAACT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32 Consensus pattern (10 bp): AAAATTTCAA Left flanking sequence: Indices 19082435 -- 19082934 TTTTAGTCTGAATTTTTAATTTTTCCGCTTTTTGTGTTCTGTACAACATAATCTTTACAAAACAC CTACCTTCTAAACTGCTCCAGCGGAAAATTGCTCAGCCACCTGGTATCCATATATACATGTTCTA CGTCCACAACGATGTCGCCCTGAAGCACAACATCGGTTTTCTTATAGCTTTGAGCAGTTTTTCGG TATTTAGCAGTTGCTGATAATTTTTCAAGACGGCTCCAAATATGCCATATAGATTGGAGAAGCTT CATCTGGAAATTTGAAAATTTTTCAAGAAAAAACTGATTTTTTTGGAAATTTTTTTGGAAATTTT TTTTTGAAATTTTCAAAATTTGATAACTACGTGAATTTTCAATTTTACAGGCTGGTTTTTATTTT AAAATGTAGAAAAAAGATTTTTTGAGAAAACATTTAAAAATGAGCAAAATCGGTCAAAAAACTAC AGTACCCCAGGAGTTTTTGTGGCGGGAGCCCCAACAAGAAAACTG Right flanking sequence: Indices 19082957 -- 19083456 TCCCATAACTCTGTTAGTTTCCGACCATTTTTCATGTTTTTTGACTTAAAACGCTCACAATTTTT CAGATTTTAATATATAATTTGCACAAACCTGTAAATCTACATCCAATCTCCGGAAATCGTCAAAA TGTGCAAGCCACGCGGCAACTTTTTTCACATAATACTCCCAGTTGGCAACGAGTTCCGCTTTTGC CACTTTCTCAGCCATTTTGAATCTCGGTGCAATTATCTGATTTGGAAGGCCTAAACTAAGCTTTT TAAGCTGATTCCCTGCACAAAAACTCGGGCTCGCGGAGCCTTGGCTCAGGATTTTTGAGGCTTCT CCCAGCAGGCGGTGCAAATCGATTTCCGTTTTTTCCGAATTTTTTTCACTTAACATTACAAAATA TGGCTTTCCTAGATATATTTCTAGTGATTTTGGTATAGATACTGTAGGTTGGGGGTCCATGGGAC AGATGACGTCACGGTTGTATTGGAAATCTGAAATTTGGGAGTTTT Found at i:19083324 original size:9 final size:9 Alignment explanation
Indices: 19083304--19083324 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 19083294 TGCAAATCGA ** 19083304 TTTCCGTTT 1 TTTCCGAAT 19083313 TTTCCGAAT 1 TTTCCGAAT 19083322 TTT 1 TTT 19083325 TTTCACTTAA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.10, C:0.19, G:0.10, T:0.62 Consensus pattern (9 bp): TTTCCGAAT Left flanking sequence: Indices 19082804 -- 19083303 TTACAGGCTGGTTTTTATTTTAAAATGTAGAAAAAAGATTTTTTGAGAAAACATTTAAAAATGAG CAAAATCGGTCAAAAAACTACAGTACCCCAGGAGTTTTTGTGGCGGGAGCCCCAACAAGAAAACT GAAAATTTCAAAAATTTTCAAAATCCCATAACTCTGTTAGTTTCCGACCATTTTTCATGTTTTTT GACTTAAAACGCTCACAATTTTTCAGATTTTAATATATAATTTGCACAAACCTGTAAATCTACAT CCAATCTCCGGAAATCGTCAAAATGTGCAAGCCACGCGGCAACTTTTTTCACATAATACTCCCAG TTGGCAACGAGTTCCGCTTTTGCCACTTTCTCAGCCATTTTGAATCTCGGTGCAATTATCTGATT TGGAAGGCCTAAACTAAGCTTTTTAAGCTGATTCCCTGCACAAAAACTCGGGCTCGCGGAGCCTT GGCTCAGGATTTTTGAGGCTTCTCCCAGCAGGCGGTGCAAATCGA Right flanking sequence: Indices 19083325 -- 19083824 TTTCACTTAACATTACAAAATATGGCTTTCCTAGATATATTTCTAGTGATTTTGGTATAGATACT GTAGGTTGGGGGTCCATGGGACAGATGACGTCACGGTTGTATTGGAAATCTGAAATTTGGGAGTT TTTGAGAGGTTCTCTTGGGGTACCGCAGTTTTTAAAGAAAATTTGAAAATTTTTACTGAAATTAC TTTAAAAATAAGTTCTCTACGTGCTGAAGTTAAAATTAATTTTTAATAATAAAAATGAACAAAGT TATGGAAGTTTCAAAATTTTCAAAATTTTCCAAAAAAAATTTTTTTGAAGTTTTGAGTCCCGCCA CGAAAACTACAGGGGTACAGTAGATTTTGACGACAACCTCGAAATTTTTTAGGAAATAGCTTTAA AAATAATTTTTTTACATGCCACATTTAATTTCAGGTCATAAGGCTGAAAATGAGCAAAGTTATGA AAGTTAGAAAATTTCGAAAATTTTCCAAATATAATTTTTTTTTAG Found at i:19083504 original size:8 final size:8 Alignment explanation
Indices: 19083491--19083506 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 19083481 AGTTTTTAAA 19083491 GAAAATTT 1 GAAAATTT 19083499 GAAAATTT 1 GAAAATTT 19083507 TTACTGAAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (8 bp): GAAAATTT Left flanking sequence: Indices 19082991 -- 19083490 TGTTTTTTGACTTAAAACGCTCACAATTTTTCAGATTTTAATATATAATTTGCACAAACCTGTAA ATCTACATCCAATCTCCGGAAATCGTCAAAATGTGCAAGCCACGCGGCAACTTTTTTCACATAAT ACTCCCAGTTGGCAACGAGTTCCGCTTTTGCCACTTTCTCAGCCATTTTGAATCTCGGTGCAATT ATCTGATTTGGAAGGCCTAAACTAAGCTTTTTAAGCTGATTCCCTGCACAAAAACTCGGGCTCGC GGAGCCTTGGCTCAGGATTTTTGAGGCTTCTCCCAGCAGGCGGTGCAAATCGATTTCCGTTTTTT CCGAATTTTTTTCACTTAACATTACAAAATATGGCTTTCCTAGATATATTTCTAGTGATTTTGGT ATAGATACTGTAGGTTGGGGGTCCATGGGACAGATGACGTCACGGTTGTATTGGAAATCTGAAAT TTGGGAGTTTTTGAGAGGTTCTCTTGGGGTACCGCAGTTTTTAAA Right flanking sequence: Indices 19083507 -- 19084006 TTACTGAAATTACTTTAAAAATAAGTTCTCTACGTGCTGAAGTTAAAATTAATTTTTAATAATAA AAATGAACAAAGTTATGGAAGTTTCAAAATTTTCAAAATTTTCCAAAAAAAATTTTTTTGAAGTT TTGAGTCCCGCCACGAAAACTACAGGGGTACAGTAGATTTTGACGACAACCTCGAAATTTTTTAG GAAATAGCTTTAAAAATAATTTTTTTACATGCCACATTTAATTTCAGGTCATAAGGCTGAAAATG AGCAAAGTTATGAAAGTTAGAAAATTTCGAAAATTTTCCAAATATAATTTTTTTTTAGAAGTTTT GCGTCCCGCCACGAAAACTTACGGGGTACTGTTTCTAGTAATTTTTAAGCTTAAAGTATAACTTA CTATTTGTCATCATTCCACCATTAAAACATTGTTGAAGCCGACACGGCTTGCAGAGAAATCTGAA ATTCAAAAAAAAAATTGTAATTTTTTATGACAATTTTCAAAATCC Found at