TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:20251852 original size:8 final size:8 Alignment explanation
Indices: 20251837--20251852 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 20251827 TGGAAATTGG 20251837 AAAATTTT 1 AAAATTTT * 20251845 AAATTTTT 1 AAAATTTT 20251853 TCACAGAAAA Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (8 bp): AAAATTTT Left flanking sequence: Indices 20251337 -- 20251836 TTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAA ATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTA CAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAA ATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAG TGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGA AAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATT TTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATT CGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGG Right flanking sequence: Indices 20251853 -- 20252352 TCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGA TTTTTTTTTCGAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATT TTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAAT TTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAG TGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAA ATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGA AATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTT CCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGA Found at i:20251985 original size:8 final size:8 Alignment explanation
Indices: 20251962--20251985 Score: 34 Period size: 8 Copynumber: 3.0 Consensus size: 8 20251952 TTTTTAGTCA * 20251962 AAATTTTA 1 AAATTTTC 20251970 AAATTTTC 1 AAATTTTC * 20251978 CAATTTTC 1 AAATTTTC 20251986 TGTGGAAAAA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (8 bp): AAATTTTC Left flanking sequence: Indices 20251462 -- 20251961 AGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGT GAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATT TTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAA TTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTT CAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAA AAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTT TTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTG ATTTTTTTTTCGAATTTTCTGTGAAAAATTTGAACTTTTTAGTCA Right flanking sequence: Indices 20251986 -- 20252485 TGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTT AAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGA AAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATT TTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAAT TGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCA ATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAA TTTAAATTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGC TACAATAATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAAT Found at i:20252044 original size:7 final size:7 Alignment explanation
Indices: 20252032--20252045 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20252022 TTTTTCAGTG 20252032 TTGGAAA 1 TTGGAAA 20252039 TTGGAAA 1 TTGGAAA 20252046 ATTTTAAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): TTGGAAA Left flanking sequence: Indices 20251532 -- 20252031 ATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAG TGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGA AAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATT TTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATT CGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCAC AGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTT TTTTTCGAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCT GTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTG Right flanking sequence: Indices 20252046 -- 20252545 ATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTC AGTGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTA AAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTG GAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTT TTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGT GATAATTTAAATTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAAC TCAGCTACAATAATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTG TGAAAAAATTTAAATTTTTAGTGAAAATTTGAATTTATAGTCAAA Found at i:20252054 original size:7 final size:7 Alignment explanation
Indices: 20252044--20252057 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20252034 GGAAATTGGA 20252044 AAATTTT 1 AAATTTT 20252051 AAATTTT 1 AAATTTT 20252058 TTCACAGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): AAATTTT Left flanking sequence: Indices 20251544 -- 20252043 TAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAA TTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTAC AATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAA TTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGT GATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAA AATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTT TCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTC GAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGA Right flanking sequence: Indices 20252058 -- 20252557 TTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTG ATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAAT TTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAA TTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCA GTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAAT TTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATA ATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTA AATTTTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTT Found at i:20252058 original size:8 final size:8 Alignment explanation
Indices: 20252043--20252058 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 20252033 TGGAAATTGG 20252043 AAAATTTT 1 AAAATTTT * 20252051 AAATTTTT 1 AAAATTTT 20252059 TCACAGAAAA Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (8 bp): AAAATTTT Left flanking sequence: Indices 20251543 -- 20252042 TTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAA ATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTA CAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAA ATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAG TGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGA AAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATT TTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATT CGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGG Right flanking sequence: Indices 20252059 -- 20252558 TCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGA TTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATT TTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAAT TTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAG TGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAATT TTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATAA TTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTAA ATTTTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTTT Found at i:20252191 original size:8 final size:8 Alignment explanation
Indices: 20252168--20252191 Score: 34 Period size: 8 Copynumber: 3.0 Consensus size: 8 20252158 TTTTTAGTCA * 20252168 AAATTTTA 1 AAATTTTC 20252176 AAATTTTC 1 AAATTTTC * 20252184 CAATTTTC 1 AAATTTTC 20252192 TGTGGAAAAA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50 Consensus pattern (8 bp): AAATTTTC Left flanking sequence: Indices 20251668 -- 20252167 AGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTGT GAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATT TTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAA TTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTC GAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAA AAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTT TTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTG ATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCA Right flanking sequence: Indices 20252192 -- 20252691 TGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTT AAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGA AAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAATTTTT CAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATAATTT GAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTAAATT TTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAATTTTCAGTGAAAAAATTTG AATTTTTTCCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATTCGAAT TTTTAGTGAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTC Found at i:20252250 original size:7 final size:7 Alignment explanation
Indices: 20252238--20252251 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20252228 TTTTTCAGTG 20252238 TTGGAAA 1 TTGGAAA 20252245 TTGGAAA 1 TTGGAAA 20252252 ATTTTAAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): TTGGAAA Left flanking sequence: Indices 20251738 -- 20252237 ATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAG TGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGA AAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATT TTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATT CGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCAC AGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTT TTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCT GTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTG Right flanking sequence: Indices 20252252 -- 20252751 ATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTC AGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAA TTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAAT AATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTT AAATTTTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAATTTTCAGTGAAAAA ATTTGAATTTTTTCCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATT CGAATTTTTAGTGAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATTTTCTGTGAAA ATATCCAATTTTAACGTTAAAATACGAGATTTAGCGATTTTTTTT Found at i:20252260 original size:7 final size:7 Alignment explanation
Indices: 20252250--20252263 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20252240 GGAAATTGGA 20252250 AAATTTT 1 AAATTTT 20252257 AAATTTT 1 AAATTTT 20252264 TTCACAGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): AAATTTT Left flanking sequence: Indices 20251750 -- 20252249 TAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAA TTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTAC AATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAA TTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGT GATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAA AATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATTT TCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTC GAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGA Right flanking sequence: Indices 20252264 -- 20252763 TTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTG ATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAATTTTTCAGTGAA AAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATAATTTGAATTTT TTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTAAATTTTTAGTG AAAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAATTTTCAGTGAAAAAATTTGAATTTTT TCCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATTCGAATTTTTAGT GAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATTTTCTGTGAAAATATCCAATTTT AACGTTAAAATACGAGATTTAGCGATTTTTTTTTTGGATTTTCAG Found at i:20252264 original size:8 final size:8 Alignment explanation
Indices: 20252249--20252264 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 20252239 TGGAAATTGG 20252249 AAAATTTT 1 AAAATTTT * 20252257 AAATTTTT 1 AAAATTTT 20252265 TCACAGAAAA Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (8 bp): AAAATTTT Left flanking sequence: Indices 20251749 -- 20252248 TTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAA ATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTA CAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAA ATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAG TGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGA AAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATT TTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATT CGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGG Right flanking sequence: Indices 20252265 -- 20252764 TCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGA TTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAATTTTTCAGTGAAA AATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATAATTTGAATTTTT TGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTAAATTTTTAGTGA AAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAATTTTCAGTGAAAAAATTTGAATTTTTT CCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATTCGAATTTTTAGTG AAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATTTTCTGTGAAAATATCCAATTTTA ACGTTAAAATACGAGATTTAGCGATTTTTTTTTTGGATTTTCAGT Found at i:20252463 original size:9 final size:9 Alignment explanation
Indices: 20252449--20252467 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 20252439 GCTACAATAA 20252449 TTTGAATTT 1 TTTGAATTT 20252458 TTTGAATTT 1 TTTGAATTT 20252467 T 1 T 20252468 CAGTGAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68 Consensus pattern (9 bp): TTTGAATTT Left flanking sequence: Indices 20251949 -- 20252448 AACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATA ATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATT CAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTG TGAAAAATTTGAACTTTTTAGTCAAAATTTTAAAATTTTCCAATTTTCTGTGGAAAAATTCGAAT TTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGAAAATTTTAAATTTTTTCACAGAAA ATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTT CGAATTTTCTGTGAAAAATTCGAATTTCTAGTGATAATTTAAATTTTTCAGTGAAAAATTGGAAA ATGTTGAATTTTTTCACAGAAAATTGGAAAACTCAGCTACAATAA Right flanking sequence: Indices 20252468 -- 20252967 CAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTGAAAAAATTTAAATTTTTAGTGAAAATTTGA ATTTATAGTCAAAAATTTAAATTTTTTGAATTTTCAGTGAAAAAATTTGAATTTTTTCCAATTTT CAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATTCGAATTTTTAGTGAAAGTTTA CATTTTATAGTCAAAAATTCAAAATTTTCCAATTTTCTGTGAAAATATCCAATTTTAACGTTAAA ATACGAGATTTAGCGATTTTTTTTTTGGATTTTCAGTGAAAAATTAAATTTTAACATTAAAAAAA AAGATTTTCAGTGAAAAATCTCGGAATTTGACCATTTTTCAATTTTTAAAGCAATATTTTTGCAA TTTTTAACTCAAATAACCCCAAAAAAAATGGTTTTTTTTTCGGTGATTTCCGAAAAAAAACTTAC AGCGTACTGACAAGCGTACATAACTCTTGCCGGATCCCGTTGACA Found at i:20252493 original size:9 final size:9 Alignment explanation
Indices: 20252479--20252497 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 20252469 AGTGAAAAAA 20252479 TTTAAATTT 1 TTTAAATTT 20252488 TTTAAATTT 1 TTTAAATTT 20252497 T 1 T 20252498 CTGTGAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (9 bp): TTTAAATTT Left flanking sequence: Indices 20251979 -- 20252478 AATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGAAATTGGA AAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTT TCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTT TAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGT TGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAAC TTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTA GTGATAATTTAAATTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAA ACTCAGCTACAATAATTTGAATTTTTTGAATTTTCAGTGAAAAAA Right flanking sequence: Indices 20252498 -- 20252997 CTGTGAAAAAATTTAAATTTTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAA TTTTCAGTGAAAAAATTTGAATTTTTTCCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTT TTTCAGTGAAAATTCGAATTTTTAGTGAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCC AATTTTCTGTGAAAATATCCAATTTTAACGTTAAAATACGAGATTTAGCGATTTTTTTTTTGGAT TTTCAGTGAAAAATTAAATTTTAACATTAAAAAAAAAGATTTTCAGTGAAAAATCTCGGAATTTG ACCATTTTTCAATTTTTAAAGCAATATTTTTGCAATTTTTAACTCAAATAACCCCAAAAAAAATG GTTTTTTTTTCGGTGATTTCCGAAAAAAAACTTACAGCGTACTGACAAGCGTACATAACTCTTGC CGGATCCCGTTGACACTTCATTTTTATACCGTCTTTCGTCTCAAC Found at i:20252566 original size:9 final size:9 Alignment explanation
Indices: 20252548--20252566 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 20252538 TAGTCAAAAA 20252548 TTTAAATTT 1 TTTAAATTT * 20252557 TTTGAATTT 1 TTTAAATTT 20252566 T 1 T 20252567 CAGTGAAAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68 Consensus pattern (9 bp): TTTAAATTT Left flanking sequence: Indices 20252048 -- 20252547 TTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTTCCAATTTTCAG TGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTTTAAA ATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGTTGGA AATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAACTTTT CCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTAGTGA TAATTTAAATTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAAACTC AGCTACAATAATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTCTGTG AAAAAATTTAAATTTTTAGTGAAAATTTGAATTTATAGTCAAAAA Right flanking sequence: Indices 20252567 -- 20253066 CAGTGAAAAAATTTGAATTTTTTCCAATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTC AGTGAAAATTCGAATTTTTAGTGAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATT TTCTGTGAAAATATCCAATTTTAACGTTAAAATACGAGATTTAGCGATTTTTTTTTTGGATTTTC AGTGAAAAATTAAATTTTAACATTAAAAAAAAAGATTTTCAGTGAAAAATCTCGGAATTTGACCA TTTTTCAATTTTTAAAGCAATATTTTTGCAATTTTTAACTCAAATAACCCCAAAAAAAATGGTTT TTTTTTCGGTGATTTCCGAAAAAAAACTTACAGCGTACTGACAAGCGTACATAACTCTTGCCGGA TCCCGTTGACACTTCATTTTTATACCGTCTTTCGTCTCAACTTCAACACCATCCGACGATATATT CGCGAAAAAGACGCTTCGTACACTGGAAATACTGGAACGACGTTA Found at i:20252631 original size:10 final size:10 Alignment explanation
Indices: 20252609--20252632 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 20252599 AGTGGAAAAA 20252609 TTCAAATTCT 1 TTCAAATTCT * * 20252619 TTCAATTTTT 1 TTCAAATTCT 20252629 TTCA 1 TTCA 20252633 GTGAAAATTC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.25, C:0.17, G:0.00, T:0.58 Consensus pattern (10 bp): TTCAAATTCT Left flanking sequence: Indices 20252109 -- 20252608 TCAGTGAAAATTTGATTTTTTTTTTCAATTTTCTGTGAAAAATTTGAACTTTTTAGTCAAAATTT TAAAATTTTCCAATTTTCTGTGGAAAAATTCGAATTTTTAGTGATAATTTAAATTTTTTCAGTGT TGGAAATTGGAAAATTTTAAATTTTTTCACAGAAAATTGGAAAATTCAGCTACAATAATTTAAAC TTTTCCAATTTTCAGTGAAAATTTGATTTTTTTTTCGAATTTTCTGTGAAAAATTCGAATTTCTA GTGATAATTTAAATTTTTCAGTGAAAAATTGGAAAATGTTGAATTTTTTCACAGAAAATTGGAAA ACTCAGCTACAATAATTTGAATTTTTTGAATTTTCAGTGAAAAAATTTAAATTTTTTAAATTTTC TGTGAAAAAATTTAAATTTTTAGTGAAAATTTGAATTTATAGTCAAAAATTTAAATTTTTTGAAT TTTCAGTGAAAAAATTTGAATTTTTTCCAATTTTCAGTGGAAAAA Right flanking sequence: Indices 20252633 -- 20253132 GTGAAAATTCGAATTTTTAGTGAAAGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATTT TCTGTGAAAATATCCAATTTTAACGTTAAAATACGAGATTTAGCGATTTTTTTTTTGGATTTTCA GTGAAAAATTAAATTTTAACATTAAAAAAAAAGATTTTCAGTGAAAAATCTCGGAATTTGACCAT TTTTCAATTTTTAAAGCAATATTTTTGCAATTTTTAACTCAAATAACCCCAAAAAAAATGGTTTT TTTTTCGGTGATTTCCGAAAAAAAACTTACAGCGTACTGACAAGCGTACATAACTCTTGCCGGAT CCCGTTGACACTTCATTTTTATACCGTCTTTCGTCTCAACTTCAACACCATCCGACGATATATTC GCGAAAAAGACGCTTCGTACACTGGAAATACTGGAACGACGTTAGTGGGACGGAAATTATTATTA GTGATTTTTGGCTTTTTGGCTTTGGCTTATTTTTCGAATTTTCAT Found at i:20253105 original size:8 final size:8 Alignment explanation
Indices: 20253092--20253110 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 20253082 TTATTAGTGA 20253092 TTTTTGGC 1 TTTTTGGC 20253100 TTTTTGGC 1 TTTTTGGC 20253108 TTT 1 TTT 20253111 GGCTTATTTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.00, C:0.11, G:0.21, T:0.68 Consensus pattern (8 bp): TTTTTGGC Left flanking sequence: Indices 20252592 -- 20253091 AATTTTCAGTGGAAAAATTCAAATTCTTTCAATTTTTTTCAGTGAAAATTCGAATTTTTAGTGAA AGTTTACATTTTATAGTCAAAAATTCAAAATTTTCCAATTTTCTGTGAAAATATCCAATTTTAAC GTTAAAATACGAGATTTAGCGATTTTTTTTTTGGATTTTCAGTGAAAAATTAAATTTTAACATTA AAAAAAAAGATTTTCAGTGAAAAATCTCGGAATTTGACCATTTTTCAATTTTTAAAGCAATATTT TTGCAATTTTTAACTCAAATAACCCCAAAAAAAATGGTTTTTTTTTCGGTGATTTCCGAAAAAAA ACTTACAGCGTACTGACAAGCGTACATAACTCTTGCCGGATCCCGTTGACACTTCATTTTTATAC CGTCTTTCGTCTCAACTTCAACACCATCCGACGATATATTCGCGAAAAAGACGCTTCGTACACTG GAAATACTGGAACGACGTTAGTGGGACGGAAATTATTATTAGTGA Right flanking sequence: Indices 20253111 -- 20253610 GGCTTATTTTTCGAATTTTCATTCAATTTTTTAGCCAAAAAAACCTGAAAAAGCTAATTTTAAAT TTTTTGTTAAATAATTTCACTGATATTCAAAAAATTGGAATATTTTGATTTTTTTTTCTCTAAAA AATCACTTTTTCTTCAAATTTTTTGCAAAAATCGAATTTCGTTCGAAAAATTCCACCAATGTCTC AATTTTCAAGAAAACTGAAAATTTCACCCAAAATTTGTGAATTTTTCGCTTAAAATGGCAAAATT TTCGAAAATTCTGCCAATTTCAATGAGAATTTTGTACATTTCAGCTTTGACATAGAAAAATGCTC TTTTCTTGGCAAATTTCAGCTAATTTTTCTAAAAATTCAATTTTTCTGACCAAAAACCTGCGAAA AACCAATTTTTGCGTGATTCTTTGCACAAAAATTCGATTTTCTTGAAATTTTCGCAAGAAATTTG ACTATTTCTTGCCAATTTCTCAGGAAAATGGGCTTTTTTCATTAA Found at i:20253738 original size:11 final size:10 Alignment explanation
Indices: 20253724--20253748 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 20253714 TTTATTTTTT 20253724 TTTTGCAGCAA 1 TTTTGCA-CAA * 20253735 TTTTTCACAA 1 TTTTGCACAA 20253745 TTTT 1 TTTT 20253749 CCCGTAAAAT Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 10 7 0.54 11 6 0.46 ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52 Consensus pattern (10 bp): TTTTGCACAA Left flanking sequence: Indices 20253224 -- 20253723 TTTTTTTTTCTCTAAAAAATCACTTTTTCTTCAAATTTTTTGCAAAAATCGAATTTCGTTCGAAA AATTCCACCAATGTCTCAATTTTCAAGAAAACTGAAAATTTCACCCAAAATTTGTGAATTTTTCG CTTAAAATGGCAAAATTTTCGAAAATTCTGCCAATTTCAATGAGAATTTTGTACATTTCAGCTTT GACATAGAAAAATGCTCTTTTCTTGGCAAATTTCAGCTAATTTTTCTAAAAATTCAATTTTTCTG ACCAAAAACCTGCGAAAAACCAATTTTTGCGTGATTCTTTGCACAAAAATTCGATTTTCTTGAAA TTTTCGCAAGAAATTTGACTATTTCTTGCCAATTTCTCAGGAAAATGGGCTTTTTTCATTAAAAA TTGGCAGAAAAACTGAATTTTTTGAACTGAATAATGCGTTTTTGGACTTAAATGCTCTTTTTTCC AAAATTTTTTGACTTTCTAGCGATAAAATTAAACTTTTATTTTTT Right flanking sequence: Indices 20253749 -- 20254248 CCCGTAAAATTTTTCAGTTTTTCTCGAATTTTTCAGTTTTTCTCGAATTTTTTCCATGAAAAATG CGATTTTCCATAGTTTTTCAAGGAAAAATCAAAATTTTTTGCTCGAAAACTTTATTTTTGTGTAA AAAACCCGTATTTTTCCATAAAAATTGAATTTTCGACCCAAAATATGCGGAAACACTATTATTTT TCGAATTTTCATTCAATTTTTTTAGCCAAAAAAACCTGAAGAAGCTAACTTTAAATTTTTTGTTA AATAATTTCAGTGATATTCAAAAAATTGGAATATTTTGATTTTTTTTTCTCTAAAAAATCACTTT TTCTTCAAATTTTTTGCAAAAATCGAATTTCGTCCGAAAAATTCCACCAATTTCTCAATTTTCAC GAAAACTGAAAATTTCACCGAAAATTTGTAAATTTCAGCTTTGACACAGAAAAATGCACTTTTTT AGCAAATTTTTCTTTAAAAAATTCAATTTTTCTGACCAAAAACCC Found at i:20254338 original size:7 final size:7 Alignment explanation
Indices: 20254328--20254343 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 20254318 TTGAAAATTT 20254328 CAATTGC 1 CAATTGC * 20254335 CAATTTC 1 CAATTGC 20254342 CA 1 CA 20254344 CCATATCAAA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31 Consensus pattern (7 bp): CAATTGC Left flanking sequence: Indices 20253828 -- 20254327 TTTTCAAGGAAAAATCAAAATTTTTTGCTCGAAAACTTTATTTTTGTGTAAAAAACCCGTATTTT TCCATAAAAATTGAATTTTCGACCCAAAATATGCGGAAACACTATTATTTTTCGAATTTTCATTC AATTTTTTTAGCCAAAAAAACCTGAAGAAGCTAACTTTAAATTTTTTGTTAAATAATTTCAGTGA TATTCAAAAAATTGGAATATTTTGATTTTTTTTTCTCTAAAAAATCACTTTTTCTTCAAATTTTT TGCAAAAATCGAATTTCGTCCGAAAAATTCCACCAATTTCTCAATTTTCACGAAAACTGAAAATT TCACCGAAAATTTGTAAATTTCAGCTTTGACACAGAAAAATGCACTTTTTTAGCAAATTTTTCTT TAAAAAATTCAATTTTTCTGACCAAAAACCCGCGAAAACCCACATTTTTGCGTGATTTTTTGCAC AAAAATTCGATTTTTTTGAAATTTTCGCAAGAAATTTGAAAATTT Right flanking sequence: Indices 20254344 -- 20254843 CCATATCAAACTCACGTTCCAATATACATTTCAAAATCCTTAGAAGTCATATTAAACATCATCCG TGACGTAGTTCGACCACAATTCAACCATCTATACTGTACAGTTGGATCAAGACTGATACGGCTTA CACGTTCCGCCACGTCGGAAACCATTGTTACGAGAGCCCGGTGAGAAGCCACATCGAGCATTCGT TGTAGAATTGAACGCGATCGCACGGCGCGCTCTTCGATCTACAAATTAATTTTCTCTTGGAATTA ACTGAAAAATATTGAATAAAGTGTACGTTTTTTTTTATTCATAACTTTCGACAAATTCCGCAGTT TTTCAAAAAACGTTACATTATTAGTCAACATTTTTTCGCAAAAATTTATTTAAAAAATGATAAAA ATTGAAAATGTTCAGATTTTCTAAACTCAAAATTGTCTGAAAATCATCAAATTTTAATAAAAATC TTTATTTCCGAAAAAAAAAACAATTTTTTCAAAGGTTTTTCTCAA Found at i:20254734 original size:10 final size:10 Alignment explanation
Indices: 20254719--20254738 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 20254709 AAAATTTATT 20254719 TAAAAAATGA 1 TAAAAAATGA * 20254729 TAAAAATTGA 1 TAAAAAATGA 20254739 AAATGTTCAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25 Consensus pattern (10 bp): TAAAAAATGA Left flanking sequence: Indices 20254219 -- 20254718 AAAAAATTCAATTTTTCTGACCAAAAACCCGCGAAAACCCACATTTTTGCGTGATTTTTTGCACA AAAATTCGATTTTTTTGAAATTTTCGCAAGAAATTTGAAAATTTCAATTGCCAATTTCCACCATA TCAAACTCACGTTCCAATATACATTTCAAAATCCTTAGAAGTCATATTAAACATCATCCGTGACG TAGTTCGACCACAATTCAACCATCTATACTGTACAGTTGGATCAAGACTGATACGGCTTACACGT TCCGCCACGTCGGAAACCATTGTTACGAGAGCCCGGTGAGAAGCCACATCGAGCATTCGTTGTAG AATTGAACGCGATCGCACGGCGCGCTCTTCGATCTACAAATTAATTTTCTCTTGGAATTAACTGA AAAATATTGAATAAAGTGTACGTTTTTTTTTATTCATAACTTTCGACAAATTCCGCAGTTTTTCA AAAAACGTTACATTATTAGTCAACATTTTTTCGCAAAAATTTATT Right flanking sequence: Indices 20254739 -- 20255238 AAATGTTCAGATTTTCTAAACTCAAAATTGTCTGAAAATCATCAAATTTTAATAAAAATCTTTAT TTCCGAAAAAAAAAACAATTTTTTCAAAGGTTTTTCTCAAAAAAGCGGAAAACTTGAAAAACTGG GGAACTTGTCGAGTTTTCGAAAAAAAAATTTCAATTTAAATTTTTACGAATATAAACCAAGAAAC TAGAATTTTAAAGAAAAAAAATCGATTTTTTCAGGCAAATTTTTTAAAATTAGCCAGAAAATCTA AATTCTCTAATTTTTTTTGTTTTTTTCAGAATTTCTAATGAAAATGTTTAATTTTATGGTAAAAA ATCTGAGATTTTAACGATTTTTTAAATTTATCGTTTTTTTTTTAACTTACAAAAATTCTAGAATA AATTGGAAAAAAAAAACAAAAAAAAATTTTTTTTTTGTAAAATGTCCGTTTTTTGCAAAAAAAAA AGAGTAAAAATTCCGCTTTTTGGAAAATTTCCAATTTTTATCATT Found at i:20256795 original size:9 final size:9 Alignment explanation
Indices: 20256781--20256800 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 20256771 CTGAGATTTG 20256781 AAGGCAAAA 1 AAGGCAAAA 20256790 AAGGCAAAA 1 AAGGCAAAA 20256799 AA 1 AA 20256801 CTTGGATTCC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.70, C:0.10, G:0.20, T:0.00 Consensus pattern (9 bp): AAGGCAAAA Left flanking sequence: Indices 20256281 -- 20256780 CCACTCGCCAATGACGCGGCTTGTCCTCCGACACTGCTTGGCTCCGACGCTCCTTTGCTCCTCCG ACACTGGTACTCCAACACCAGCGATCCCAGCTTGTCCTTCTTATCCCGAACGTCTTTCGACGTGA TCGATAACTTTTCAGCTTGTCCTTCTTATCCCGAACGTCTTTCGACGTGATCGCTAACTTCTCCT GGTCGCTGCTCTTCCTCCTAAGCTTTTCCTCCTTTTGTTGACGAAGATCCGAATTCCAACGGATT CTGGATGTCCCGAAGCCAACTCCATCGTCCGACGTTGCTGCTGCTCTGATGTACGACGTCTTCCG ATCTCCGCTGCTGGTGATCCTCAGAGCGCACCGTCCTGATCCATCCCTTCGTGCGTACAGCACGA CAAAAGCGATCACGATTCAATGGGTAATATATTTACCATTAATGTCTATGACTTCTTGCCAACGC AACGGAAGCTAAACAATACCCTCCGCATAGAACTTCTGAGATTTG Right flanking sequence: Indices 20256801 -- 20257300 CTTGGATTCCGAGTGTCTGGAGCTTCTGGAGGGTCTTCAAAGCTGTATGAGGTCTTGCGTTGTCA AGTAGCATCAACAATTTTGATCCTCTAGGGCGATGTAGTCGGTGAGCATGGACCATCTTTTCCAA TTGAGTGCAGTATAGATCAGCGTTGATGGTGGCTCCGTCTGGAAGAAGCTCTCGGAAAATGACAA CGTTACTGTCCCATCAAATTGAGAGAACCTATTTTTCTCGTAAAGTTTTCTTTTGAGGTCAGGTT TTGCGGTTTCCTTGACCGGGACCCTCTTTTTTTCCTTGTATGGTTAACATACAGTACCCATTTCT CATCTCCAGTAATGGTATCCTTAACCCAGTCCGTCGTTCGTTTCCTAGTGAGCAGCGAAAGAGAG AGGTTACAACGCAATTTTTTCAAAAATCGGACATTTTGTGAGGAACGAGTTGACCGAGTTTTGGC ACCCTTCCAGTTTCGCGGAGATGGTTGATGATGGTTGTTTGGGGA Found at i:20259077 original size:7 final size:7 Alignment explanation
Indices: 20259065--20259083 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 20259055 CATCTAAGAT 20259065 CAAACTA 1 CAAACTA 20259072 CAAACTA 1 CAAACTA 20259079 CAAAC 1 CAAAC 20259084 GGACGGAAGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.58, C:0.32, G:0.00, T:0.11 Consensus pattern (7 bp): CAAACTA Left flanking sequence: Indices 20258565 -- 20259064 AACTACAGTAACGCTACCGTATACCTACAGTACTTCTACAGTACTACTACAGTACCTTGACATTA TCCCCCCAGCAACTCCCAACCCAATACCTCTTCTGTGGACAAAAACTAAATTTTTCCTAACCTAC AGTAACGCTACCGTATACCTACAGTACTTCTACAGTACCACTACAGTACCTTGACATTATCCCCC AGCAACTCCCAACCAATACCTCTTCTGTAGACAAAAACTCACATTTTCTCAAACTACAGTAACCC TACCGTATGACTACAGTACTCCTACAGTACTACTACAGTACCTTGACATTATCCCCCAGCAACTC CCAACCCAATACCTCTTCTGTAGACAAAAACTCACATTTTCTCAAACTACAGTAACCCTACCGTA TACCTACAGTACTCCTACAGTACTACTACAGTACCTTGACATTATCCCTCACCAACTCTTAACCC AATATCTCTTCCAACTACAGAAAAGAGAGTTGAAACATCTAAGAT Right flanking sequence: Indices 20259084 -- 20259583 GGACGGAAGGACACGCGCTTTATATATAGTTTACGTATATTGGTAGTTTATCTCATTTAATTTCG TCGATTAAAGTACATTTAAAGCCGATAGGTAACCAAAAATCATCGAAATTGGTTATCTATCGGTT TTAAATGTACCTTAATCGACGACATTAAATTAGATATTAATTACCAATATATGTAATAAAGGATG ATAATTCCAAAAAAGCCAACTACGGACGGATGTGACATGGAAAATGGGAAAAATTCGTGATTTTA GCCAAAATCAGTGCAATTTTTTCAAAATTTTGAACCGCCATAAAAAATTTTTGAAAAATTTTTGA GCAGTTTCATTACGAAATTCGTTCATTTGAGCTTATTTTGGGTCTATAAGTTCAAAATCGTCCGA ACCGTTAGTCCTCCTTTAAAAAGTATTTCTCATACCGAAAAAATCGAAAAAAAAGCCTCGTTTTT TGAAAATTTTAAAAATTTCAATCTTTACGAATATCGTTCACAAAA Found at i:20259553 original size:9 final size:9 Alignment explanation
Indices: 20259536--20259556 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 20259526 AAGCCTCGTT * 20259536 TTTTGAAAA 1 TTTTAAAAA 20259545 TTTTAAAAA 1 TTTTAAAAA 20259554 TTT 1 TTT 20259557 CAATCTTTAC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52 Consensus pattern (9 bp): TTTTAAAAA Left flanking sequence: Indices 20259036 -- 20259535 ACAGAAAAGAGAGTTGAAACATCTAAGATCAAACTACAAACTACAAACGGACGGAAGGACACGCG CTTTATATATAGTTTACGTATATTGGTAGTTTATCTCATTTAATTTCGTCGATTAAAGTACATTT AAAGCCGATAGGTAACCAAAAATCATCGAAATTGGTTATCTATCGGTTTTAAATGTACCTTAATC GACGACATTAAATTAGATATTAATTACCAATATATGTAATAAAGGATGATAATTCCAAAAAAGCC AACTACGGACGGATGTGACATGGAAAATGGGAAAAATTCGTGATTTTAGCCAAAATCAGTGCAAT TTTTTCAAAATTTTGAACCGCCATAAAAAATTTTTGAAAAATTTTTGAGCAGTTTCATTACGAAA TTCGTTCATTTGAGCTTATTTTGGGTCTATAAGTTCAAAATCGTCCGAACCGTTAGTCCTCCTTT AAAAAGTATTTCTCATACCGAAAAAATCGAAAAAAAAGCCTCGTT Right flanking sequence: Indices 20259557 -- 20260056 CAATCTTTACGAATATCGTTCACAAAAAAATTAGCTAGGTATTCTTCTTTAAAAGCGAGAATTTT CGATATTTTGACATTTTCCTGAAAAAACTGAAAATTTTTTAGATTTCCGCTGAAAAATGCAACGA AACTATCTGTAAAAAGGCATTTTTCTGAATAAAACACCGAACAATCGGGGGAATTTTTTTTAAAA CAATAATTTTCTATTTTTTCGGCATTTTAAGTGGAAAAATTGAAAATGTTAGATTTCTTCTGAAA AATCGACAAATTTACAACAATTTTTGATTTTCAAATAAAAATTGATTTTTTTGAATAAAATACCA AAAAAACAAAAAAAATCTATTTTTCTGAAGACTGTAGTGATTTTTTTGTTTTTTATTGGTATTTC ATTCAAAAAAAATCAATTTTTATTTGAAAATCAAAAAATGTTGTAAAATTTGTCGATTTTTCAGA AGAAATCTAACATTTTCAGTTTTTCCACTTAAAATGCCGAAAAAA Found at i:20259885 original size:9 final size:9 Alignment explanation
Indices: 20259873--20259896 Score: 34 Period size: 9 Copynumber: 2.7 Consensus size: 9 20259863 TTTTTTGAAT * * 20259873 AAAATACCA 1 AAAAAACAA 20259882 AAAAAACAA 1 AAAAAACAA 20259891 AAAAAA 1 AAAAAA 20259897 TCTATTTTTC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.83, C:0.12, G:0.00, T:0.04 Consensus pattern (9 bp): AAAAAACAA Left flanking sequence: Indices 20259373 -- 20259872 TTGAACCGCCATAAAAAATTTTTGAAAAATTTTTGAGCAGTTTCATTACGAAATTCGTTCATTTG AGCTTATTTTGGGTCTATAAGTTCAAAATCGTCCGAACCGTTAGTCCTCCTTTAAAAAGTATTTC TCATACCGAAAAAATCGAAAAAAAAGCCTCGTTTTTTGAAAATTTTAAAAATTTCAATCTTTACG AATATCGTTCACAAAAAAATTAGCTAGGTATTCTTCTTTAAAAGCGAGAATTTTCGATATTTTGA CATTTTCCTGAAAAAACTGAAAATTTTTTAGATTTCCGCTGAAAAATGCAACGAAACTATCTGTA AAAAGGCATTTTTCTGAATAAAACACCGAACAATCGGGGGAATTTTTTTTAAAACAATAATTTTC TATTTTTTCGGCATTTTAAGTGGAAAAATTGAAAATGTTAGATTTCTTCTGAAAAATCGACAAAT TTACAACAATTTTTGATTTTCAAATAAAAATTGATTTTTTTGAAT Right flanking sequence: Indices 20259897 -- 20260396 TCTATTTTTCTGAAGACTGTAGTGATTTTTTTGTTTTTTATTGGTATTTCATTCAAAAAAAATCA ATTTTTATTTGAAAATCAAAAAATGTTGTAAAATTTGTCGATTTTTCAGAAGAAATCTAACATTT TCAGTTTTTCCACTTAAAATGCCGAAAAAAATAGAAAATTATTGTTTCACAAAAAAACATTTTCC CCGATTTTTCGGTGTTTTATTCAGAAAAATGCCTTTTTACGAATAAATTCGTTCCATTTTCCAGA GGAAATCCAAAAAAAAATTTCAGTTTTTTCAGGAAAATGTCAAAATATCGAAAATTCTCGCCTTT AAAGAAGAATACCTGGCTAATTTTTTGTGAGCGATTTTCGTAAAAATTGGAATTTTTGAAACTTT CAAAAATCTAGGCGTTTTTTTTCGATTTTTTCGGTATGAGAAATTACTTTTTTTTTGAAAATCGA AAAAAAAATCTTCACTTTTATCAAAAAAAAAAGTACCAAAAAATA Found at i:20259891 original size:8 final size:8 Alignment explanation
Indices: 20259880--20259895 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 20259870 AATAAAATAC 20259880 CAAAAAAA 1 CAAAAAAA 20259888 CAAAAAAA 1 CAAAAAAA 20259896 ATCTATTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00 Consensus pattern (8 bp): CAAAAAAA Left flanking sequence: Indices 20259380 -- 20259879 GCCATAAAAAATTTTTGAAAAATTTTTGAGCAGTTTCATTACGAAATTCGTTCATTTGAGCTTAT TTTGGGTCTATAAGTTCAAAATCGTCCGAACCGTTAGTCCTCCTTTAAAAAGTATTTCTCATACC GAAAAAATCGAAAAAAAAGCCTCGTTTTTTGAAAATTTTAAAAATTTCAATCTTTACGAATATCG TTCACAAAAAAATTAGCTAGGTATTCTTCTTTAAAAGCGAGAATTTTCGATATTTTGACATTTTC CTGAAAAAACTGAAAATTTTTTAGATTTCCGCTGAAAAATGCAACGAAACTATCTGTAAAAAGGC ATTTTTCTGAATAAAACACCGAACAATCGGGGGAATTTTTTTTAAAACAATAATTTTCTATTTTT TCGGCATTTTAAGTGGAAAAATTGAAAATGTTAGATTTCTTCTGAAAAATCGACAAATTTACAAC AATTTTTGATTTTCAAATAAAAATTGATTTTTTTGAATAAAATAC Right flanking sequence: Indices 20259896 -- 20260395 ATCTATTTTTCTGAAGACTGTAGTGATTTTTTTGTTTTTTATTGGTATTTCATTCAAAAAAAATC AATTTTTATTTGAAAATCAAAAAATGTTGTAAAATTTGTCGATTTTTCAGAAGAAATCTAACATT TTCAGTTTTTCCACTTAAAATGCCGAAAAAAATAGAAAATTATTGTTTCACAAAAAAACATTTTC CCCGATTTTTCGGTGTTTTATTCAGAAAAATGCCTTTTTACGAATAAATTCGTTCCATTTTCCAG AGGAAATCCAAAAAAAAATTTCAGTTTTTTCAGGAAAATGTCAAAATATCGAAAATTCTCGCCTT TAAAGAAGAATACCTGGCTAATTTTTTGTGAGCGATTTTCGTAAAAATTGGAATTTTTGAAACTT TCAAAAATCTAGGCGTTTTTTTTCGATTTTTTCGGTATGAGAAATTACTTTTTTTTTGAAAATCG AAAAAAAAATCTTCACTTTTATCAAAAAAAAAAGTACCAAAAAAT Found at i:20260477 original size:8 final size:8 Alignment explanation
Indices: 20260464--20260479 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 20260454 TTTTTCCCCC 20260464 TGTAAAAT 1 TGTAAAAT 20260472 TGTAAAAT 1 TGTAAAAT 20260480 ATTGATTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (8 bp): TGTAAAAT Left flanking sequence: Indices 20259964 -- 20260463 TTTTATTTGAAAATCAAAAAATGTTGTAAAATTTGTCGATTTTTCAGAAGAAATCTAACATTTTC AGTTTTTCCACTTAAAATGCCGAAAAAAATAGAAAATTATTGTTTCACAAAAAAACATTTTCCCC GATTTTTCGGTGTTTTATTCAGAAAAATGCCTTTTTACGAATAAATTCGTTCCATTTTCCAGAGG AAATCCAAAAAAAAATTTCAGTTTTTTCAGGAAAATGTCAAAATATCGAAAATTCTCGCCTTTAA AGAAGAATACCTGGCTAATTTTTTGTGAGCGATTTTCGTAAAAATTGGAATTTTTGAAACTTTCA AAAATCTAGGCGTTTTTTTTCGATTTTTTCGGTATGAGAAATTACTTTTTTTTTGAAAATCGAAA AAAAAATCTTCACTTTTATCAAAAAAAAAAGTACCAAAAAATAATGATTAAAAATTCGATAAAGA AATAAATTTTTCTGTGCTTTTTCTGAAAAATCTTTTTTTTCCCCC Right flanking sequence: Indices 20260480 -- 20260979 ATTGATTTTTCACCGGGGAAAATCGATCATTTTTCCCCATTTTTTACAACAAAAAAAGGGCCCGT ACAGTTTTGAATACATCTCTGAGTAAAAGTGTATTCTGTGCCCATTTCAACGAATCCTTCCAGTG CAATAGTTTAACTTTCTCCGAATCCGATTCTCTATAGGAATATGTATATTTCTTGTCTTTAGGAT CCCGAAAGAGACCATTTCCGCTTTGAATATCGTCCTGTACAATACTGACGGCGAGCATCGACCGT CGAGCCAAATCTTTGGGCACCGAAACTTCGATAATCGACAAATTTTCCATATTATTGCTTAGAGA TCGTCGGGAAATGTCGAAAATCGCCGGAGTATCGTATTTCCAGCCGAAAATGTGATAGGATAGGT CTCCGCAAATGTAGTCGCCGACTTTTCGTACTCGCCAGATTTCACGCATTTCTCGGAGTTCTCTG ACAAAAAATTATATTAAAATACTCTGAAATTGAGTCAAAAAGTTA Found at i:20261028 original size:7 final size:7 Alignment explanation
Indices: 20261016--20261029 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20261006 ATGGCGAAAA 20261016 TTTGTAG 1 TTTGTAG 20261023 TTTGTAG 1 TTTGTAG 20261030 CTTAGCAGCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57 Consensus pattern (7 bp): TTTGTAG Left flanking sequence: Indices 20260516 -- 20261015 CCATTTTTTACAACAAAAAAAGGGCCCGTACAGTTTTGAATACATCTCTGAGTAAAAGTGTATTC TGTGCCCATTTCAACGAATCCTTCCAGTGCAATAGTTTAACTTTCTCCGAATCCGATTCTCTATA GGAATATGTATATTTCTTGTCTTTAGGATCCCGAAAGAGACCATTTCCGCTTTGAATATCGTCCT GTACAATACTGACGGCGAGCATCGACCGTCGAGCCAAATCTTTGGGCACCGAAACTTCGATAATC GACAAATTTTCCATATTATTGCTTAGAGATCGTCGGGAAATGTCGAAAATCGCCGGAGTATCGTA TTTCCAGCCGAAAATGTGATAGGATAGGTCTCCGCAAATGTAGTCGCCGACTTTTCGTACTCGCC AGATTTCACGCATTTCTCGGAGTTCTCTGACAAAAAATTATATTAAAATACTCTGAAATTGAGTC AAAAAGTTAATTTTTCGGAAGTTTAAACCTTAAAAATGGCGAAAA Right flanking sequence: Indices 20261030 -- 20261529 CTTAGCAGCGCCCAAAACTAAATTAGCAGCGCCCAAAAACTTGTAGTTTGTAGTTTTAGCAGCGC CACACGGCCTCCAGAATTCGCTGGAATTCGTTTCGCGGGGACAGCAGTTTTTTGCTATTTTTGGT TTCTATGAAAATTATTTTAAATTTTTGATTCATAATATTCTTAAGAAGTATCATCCGAATTGAAA ATGTGTAAAATTATGAAATTTGACCGAAAACTGAAAGTTTTACAGAAGGAAGCCACTACAGTTGT TAAAAAAATGTATCAGGATCGCCATTTTTGCGATTTATGCGTCGTAAAATATGTCATTTTGTAGA GAATTAACAGTTTTATAAGAATTTTCGTTTGAAAATTTAAAATAGTTTTTATTAAAAACTTTAAA ATTGAAGAAATGAAAAGATTTTAACGTAAAATTGTTGATTTTTTGAATATTTTTTTATTAGAAAT TAAAGAATTAAAATTTCAAAACGAAAATTCTTATAAAACTTTTAA Found at i:20261082 original size:7 final size:7 Alignment explanation
Indices: 20261070--20261085 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 20261060 GCCCAAAAAC 20261070 TTGTAGT 1 TTGTAGT 20261077 TTGTAGT 1 TTGTAGT 20261084 TT 1 TT 20261086 TAGCAGCGCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62 Consensus pattern (7 bp): TTGTAGT Left flanking sequence: Indices 20260570 -- 20261069 AAAGTGTATTCTGTGCCCATTTCAACGAATCCTTCCAGTGCAATAGTTTAACTTTCTCCGAATCC GATTCTCTATAGGAATATGTATATTTCTTGTCTTTAGGATCCCGAAAGAGACCATTTCCGCTTTG AATATCGTCCTGTACAATACTGACGGCGAGCATCGACCGTCGAGCCAAATCTTTGGGCACCGAAA CTTCGATAATCGACAAATTTTCCATATTATTGCTTAGAGATCGTCGGGAAATGTCGAAAATCGCC GGAGTATCGTATTTCCAGCCGAAAATGTGATAGGATAGGTCTCCGCAAATGTAGTCGCCGACTTT TCGTACTCGCCAGATTTCACGCATTTCTCGGAGTTCTCTGACAAAAAATTATATTAAAATACTCT GAAATTGAGTCAAAAAGTTAATTTTTCGGAAGTTTAAACCTTAAAAATGGCGAAAATTTGTAGTT TGTAGCTTAGCAGCGCCCAAAACTAAATTAGCAGCGCCCAAAAAC Right flanking sequence: Indices 20261086 -- 20261585 TAGCAGCGCCACACGGCCTCCAGAATTCGCTGGAATTCGTTTCGCGGGGACAGCAGTTTTTTGCT ATTTTTGGTTTCTATGAAAATTATTTTAAATTTTTGATTCATAATATTCTTAAGAAGTATCATCC GAATTGAAAATGTGTAAAATTATGAAATTTGACCGAAAACTGAAAGTTTTACAGAAGGAAGCCAC TACAGTTGTTAAAAAAATGTATCAGGATCGCCATTTTTGCGATTTATGCGTCGTAAAATATGTCA TTTTGTAGAGAATTAACAGTTTTATAAGAATTTTCGTTTGAAAATTTAAAATAGTTTTTATTAAA AACTTTAAAATTGAAGAAATGAAAAGATTTTAACGTAAAATTGTTGATTTTTTGAATATTTTTTT ATTAGAAATTAAAGAATTAAAATTTCAAAACGAAAATTCTTATAAAACTTTTAATTCTCTACAAA ATGACATATTTTACGACGCATAAATCGCAAAAATGGCGATCCTGA Found at