TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_X Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17718850 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11563089 original size:9 final size:9 Alignment explanation
Indices: 11563072--11563089 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 11563062 CACCGCAACG * 11563072 GTTACGTCT 1 GTTAAGTCT 11563081 GTTAAGTCT 1 GTTAAGTCT 11563090 TGTGCAGGTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44 Consensus pattern (9 bp): GTTAAGTCT Left flanking sequence: Indices 11562572 -- 11563071 ACGAGCACAAAATGACATACTCGATCTCAGTGCTTGTTGCATTTTCTGTGTTTTACTTGGTACTC ATTGATCTTATCCCACCAACATCGCTATCTTTATCTCTCATTGGTAAAACGTTCAAGTGTTCTCT TTTAAAAATTTTAATTTCAGGAATATATTTGTTATTCACACTTCTCATGGTCTCAGTTTCTATCA TTCTTTCAGTTGTCACTATCAATATGTACAGAAAGTAAGCATTGTGTCAATTTTTTTTTGTTGTT GCTGAATACAAGTTCAACTTTCAGACAAGCTTTCTCATCTGGAATGTCTCATTGGCAACGATGGC TCTTTGTGCAGCGGCTACCGAAACTGCTCCGGTTGAAAACGTTGGAGCACACACTAGGACCAGAT GAGGGTAGTGAAACAACAACTCCTCGCACTGGTTCAGTTTCTGTTACTGCATCTGTTACGCAACG AACTTTGAATCCCAACAATAATTCACCGGTGTTCCCACCGCAACG Right flanking sequence: Indices 11563090 -- 11563589 TGTGCAGGTTAGCTTTCAGCGAGGAAATGTATTCCCAAACTGATATTTTGTAGATGGACGAAGCT TTAAAACAACGTTGTGCGGCAGATAATTTGGATTTATTCAGAAAAATTGCTGGTCATTTAAAGAT CATCTCTGCACATTTCCACAACCAACAAATGGAGGGAAAGGTTTTACCCACTTTTTCAAAAAACT TCAAATCAATTTGTGTTTGTCTTTTCAGATTACTGAAGAATGGCAGTTAATGAGCTTGGTTATCG ATAGGATATTCCTGATATTGTTTCTTGCAGTCAGTATGGCAGCAAATATAATGTTTGTTTACAAT TCTCCAACATTATTCGACGATAGGCCTTCTTTGGTACCAAGTGTTGCCCACAAACCACTCAGCGG AGGAACCATCAACGTTCTTAACACCTGAACAATGGTGTTTTGTTTATAATTTAACACACGGATTT TGAATAATGTATTTATTTTTGATGTTGTATTTCAATACTGAAAAA Found at i:11566489 original size:10 final size:10 Alignment explanation
Indices: 11566470--11566489 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11566460 TAGGTTAAGA 11566470 TTGCAAATAT 1 TTGCAAATAT * 11566480 TTGTAAATAT 1 TTGCAAATAT 11566490 ATTATTGTAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45 Consensus pattern (10 bp): TTGCAAATAT Left flanking sequence: Indices 11565970 -- 11566469 AGGGATTATGTACTTGATTTTGGAGCGAGAGTACATTAAATTAGAGCAATTTCATCGTGATTACA CAGGAAAATATCTCGATGATTCAAACACTTTTATGGATCATCGCATGAAATCACAAATCTGCCTT AACTCTGCTGCAATGTACAGAGAAATTGGATTCTTGAGAAAACAAGCTTTCTATGCGAGACTTAG TGTTTTATTTGAGTTGCATGTAACCGAAGGACGTGTCAGACAAGCCAGTGATTACAAAATTGTCT ACCCAGTGCTTTTCAAGTTAGTTTTGCTCACCATTAGGTGTGTTATCATCAATTGAATTTCAGAA CTTTGGAAGGATATGGCGTTGAATTAGGAGAACCGCATGATATCAAAAACAAGAAATTAGGACCA GTGAAACTTCAAATAAAATCTCTCCATGAGATTTTCACAGCTGCCAACCGTGCGGGACACCGCGA TGCAGCAATTCGTCATTTGTGCTTCTTACTCCAGGTAGGTTAAGA Right flanking sequence: Indices 11566490 -- 11566989 ATTATTGTAAATGAGAAATTGATAGAGAAATGTTTGCATCTATGTATATACGTATATTTAATTTT TCAGGTTTACTACCCACACTTGGACAGCTCTATGACGACTCGTCTTTTCGAGGATTTAGATAACC TAGTGAAAGCTACTAACCTCGTTCATCAGTTGAATCAGACAATTGTGGTTGACGATGGAAAAATC ATTATTCCTGGTCTTCAATTAACCCGATTTCCAATAATTCAGTTAGTTGCTAAACCCGGTTTTAC TAAAGTGGAAAATTATTTATAGATCGCCAACCGTGCTCGCTCTACAGTCCAATTTGGCCCCAACA ATTGTTCCGAATAAATGTCAAGCGTCCATCTTCATATACACCCCGTTTGCAAAAAAAGCTGATAA CGGTACGAAATATTCACATTTTTGAGTAAATGGTGAATCTTTCAGCGTTGCTTTGGGTTACGGAT TGTCCTGGTGAAGTTGAAGTGACTGTCAAGAACTGTCGAGGATCT Found at i:11568490 original size:8 final size:8 Alignment explanation
Indices: 11568474--11568490 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 11568464 TCACAGTTGG 11568474 AATTGGTC 1 AATTGGTC * 11568482 AATTTGTC 1 AATTGGTC 11568490 A 1 A 11568491 CCGTTGAAGT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41 Consensus pattern (8 bp): AATTGGTC Left flanking sequence: Indices 11567974 -- 11568473 ACATTGTTGTTGACGTAACCAATAGTACTGAACATGACGCGGAGCTTGTCTATAGCAACTCGCGA AGAATGTATGTTCTCCCGAAGGAAACTTGTAGAGTGCCCATTTTGTCGCCGTGTTGCTCTGACGT TACTGGTGGAGCTTTTCATCAGGCGAAACAACGTGGAAGTCACATGATGCAGAAAATGGAAACTG AAAGACTGCGGTTGATTCTGGAAAACCATGTCTCGAAGCATTTAGATATTCGTTGGTCTATTCCA GCTCTCAATGTAGGTTTGATGTTAATTTCTTAATAGGAAAAATAAACATTATTTAAATTTAAAAC TATGAAATATTAAGTCTCAATAAAGCAATTAATATTTTCAGCTTGATGGACAAGTACCTGTTGGC TCCCTTCTTTCTTCAGTGTCACTTCTAAAACAACTCGTGCTACCAGCCATTAGCCTTGATTTCTT TGTTAACGGGAAACAGTACGTAAGCGAGGACGATGTCACAGTTGG Right flanking sequence: Indices 11568491 -- 11568990 CCGTTGAAGTATCCATCATTTCTTCGTTAGCCGGTGAGATCAATAGCCTACATTAATTCTGACGG AAAATTAGTTTCAGCCGAATACAATGGAATTCTATCGTTGGAATGTGAGCAAGAGATTTCACATC TTCTCGGTTCCAATGATACGAGCAGCTTTATGTTAGTTACCGGTGCGAAGAAGATTCCTTTCACA GTCGACGTAAGTGATGAAAGATGTCCACAGAAATGAAATCATGCTTGTGGTTTATTTCCAAAAAA TTCAAACTACCCGTAATTTTTGAAACTCTACAACTGTTATTAGGCCCTATAATAATAATGGTGTC GACCCATTGCGACTCATTGCCACCACTATTTATTTAATCCTGAGTTATTAGGGAGTGATTTGAAC GAAAATCTACAATTATAGTCTAAAAAGTCTGTAATCTGTGAGTAAAATCTGAATGTAAGATTTGC AATAAATGCCAGGTATAGCATTTTAAATGACTTACATGCATAAAA Found at i:11568833 original size:10 final size:10 Alignment explanation
Indices: 11568815--11568839 Score: 36 Period size: 10 Copynumber: 2.5 Consensus size: 10 11568805 ATAATGGTGT 11568815 CGACCCATTG 1 CGACCCATTG * 11568825 CGACTCATTG 1 CGACCCATTG * 11568835 CCACC 1 CGACC 11568840 ACTATTTATT Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.20, C:0.44, G:0.16, T:0.20 Consensus pattern (10 bp): CGACCCATTG Left flanking sequence: Indices 11568315 -- 11568814 TCAATAAAGCAATTAATATTTTCAGCTTGATGGACAAGTACCTGTTGGCTCCCTTCTTTCTTCAG TGTCACTTCTAAAACAACTCGTGCTACCAGCCATTAGCCTTGATTTCTTTGTTAACGGGAAACAG TACGTAAGCGAGGACGATGTCACAGTTGGAATTGGTCAATTTGTCACCGTTGAAGTATCCATCAT TTCTTCGTTAGCCGGTGAGATCAATAGCCTACATTAATTCTGACGGAAAATTAGTTTCAGCCGAA TACAATGGAATTCTATCGTTGGAATGTGAGCAAGAGATTTCACATCTTCTCGGTTCCAATGATAC GAGCAGCTTTATGTTAGTTACCGGTGCGAAGAAGATTCCTTTCACAGTCGACGTAAGTGATGAAA GATGTCCACAGAAATGAAATCATGCTTGTGGTTTATTTCCAAAAAATTCAAACTACCCGTAATTT TTGAAACTCTACAACTGTTATTAGGCCCTATAATAATAATGGTGT Right flanking sequence: Indices 11568840 -- 11569339 ACTATTTATTTAATCCTGAGTTATTAGGGAGTGATTTGAACGAAAATCTACAATTATAGTCTAAA AAGTCTGTAATCTGTGAGTAAAATCTGAATGTAAGATTTGCAATAAATGCCAGGTATAGCATTTT AAATGACTTACATGCATAAAAATAACTGAAATCGTTTGATTTAAAAAATAACACAATAGATTTCA AAACCTACTTCATTCCAACCGGAACAATTCATATTTTCAGAAAGAGAACAAACAATCGGCAACAT TCAACTTGGCCTTTATTGTCGAAGGAAGTTTCCGTGTCCGCCCACAAATCACTCCGGCTCCCGGT CAAAATGCTCTTCTCGCCGAGGACATGTTTGCCACTCCTGTCGCATTTAGCGTTTCTACTAAATT TTGAATTGTAAAATTACAAATATTTTTTTTTCATATTCCTCTCCAATTGCCTACCACACTTCTGA TGTTAGTCAAACAGTTCACTACGTTACTGTTAGTTTTTTGTTGCA Found at i:11571246 original size:7 final size:7 Alignment explanation
Indices: 11571234--11571248 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11571224 AATTACATAC 11571234 TTGTTAA 1 TTGTTAA 11571241 TTGTTAA 1 TTGTTAA 11571248 T 1 T 11571249 AAAAAATTAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60 Consensus pattern (7 bp): TTGTTAA Left flanking sequence: Indices 11570734 -- 11571233 TCCGTCCGGTCTCCCTTCTTCATCCTATTCGGACCCTTATTGTTATATAGCTCACCATTTTTTCC CTATTTTCACTTCACAGCGCCCTCTCTTCCACCATAATACCACAAAAATTGAAGTAACATAACTT CTTTGTTTCTCTCACACTTCCGCTCGCCGCTTTCAGTATTTTCCGTCATTCTTTTGATGGATTCT TCGGAATCCAACCCTTGTATGAAAACGAACAAAAACACATTTTGATGATGATGATTTTGGCGTGC TCATAGAAGCGTAAAACTACCATAGATTCGTGCAATTGAGCCGAAACTACTACGGAGCACCGATT GGCTCTTATAATATGCACCGATAGTCGGAGGGAGCTTGACAAAACATACTTCGGCAAGAGAGTCT TCTTCACTCGCAAAATAATGATAATTCGCTGTAATTGCCGTACATGAGCAATTCCACGGCATTTT TGTTATAGTGAACGGATGAGACCAATAACAAAAATAATTACATAC Right flanking sequence: Indices 11571249 -- 11571748 AAAAAATTACAAGCTGAATATCAACATAATTTTTGGTTAAAAAATTAATGATTGCTACTGTGACC TAAAATATTAAATTCTGCCAGCAAGGTTTTCAAAACAAAAAAATCAACGTTTCAAATAATTTCGA TTACTTGATTTTCTGAATCTCGAGTTTAAATTTATAAAGTTAAAAAGAAATTTCAACTTATTTTT TGAATGTCCACGAAAATTAATTAATTTTTTCAATTTTGTTTTCATTCACGGAATCTTCCATACAA TTCGTCCAGAAAACGGCCGAATGCTGAAAGAATTCATCATCAAATTTCAATGATGTTTTCTTATT CGACATCTAGTGAAAGCATTTACCAGATGCTCAAAGCGCAATTGCTCCTTCAATCATGAAATCGT AGTCTCTCAGAAACTCGGCGAAACTTTTCTTTTCTTCAATCCTACTACTTCTTTTTGTAGTATCC CAAAGAAGAGCGAGCGTTGGATTGTGTTCCGTAGAAGCGAGTGAT Found at i:11571425 original size:8 final size:8 Alignment explanation
Indices: 11571406--11571425 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 11571396 TCTCGAGTTT * * 11571406 AAATTTAT 1 AAAGTTAA 11571414 AAAGTTAA 1 AAAGTTAA 11571422 AAAG 1 AAAG 11571426 AAATTTCAAC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30 Consensus pattern (8 bp): AAAGTTAA Left flanking sequence: Indices 11570906 -- 11571405 CCGTCATTCTTTTGATGGATTCTTCGGAATCCAACCCTTGTATGAAAACGAACAAAAACACATTT TGATGATGATGATTTTGGCGTGCTCATAGAAGCGTAAAACTACCATAGATTCGTGCAATTGAGCC GAAACTACTACGGAGCACCGATTGGCTCTTATAATATGCACCGATAGTCGGAGGGAGCTTGACAA AACATACTTCGGCAAGAGAGTCTTCTTCACTCGCAAAATAATGATAATTCGCTGTAATTGCCGTA CATGAGCAATTCCACGGCATTTTTGTTATAGTGAACGGATGAGACCAATAACAAAAATAATTACA TACTTGTTAATTGTTAATAAAAAATTACAAGCTGAATATCAACATAATTTTTGGTTAAAAAATTA ATGATTGCTACTGTGACCTAAAATATTAAATTCTGCCAGCAAGGTTTTCAAAACAAAAAAATCAA CGTTTCAAATAATTTCGATTACTTGATTTTCTGAATCTCGAGTTT Right flanking sequence: Indices 11571426 -- 11571925 AAATTTCAACTTATTTTTTGAATGTCCACGAAAATTAATTAATTTTTTCAATTTTGTTTTCATTC ACGGAATCTTCCATACAATTCGTCCAGAAAACGGCCGAATGCTGAAAGAATTCATCATCAAATTT CAATGATGTTTTCTTATTCGACATCTAGTGAAAGCATTTACCAGATGCTCAAAGCGCAATTGCTC CTTCAATCATGAAATCGTAGTCTCTCAGAAACTCGGCGAAACTTTTCTTTTCTTCAATCCTACTA CTTCTTTTTGTAGTATCCCAAAGAAGAGCGAGCGTTGGATTGTGTTCCGTAGAAGCGAGTGATGG GTCATGGGGCCGCGCGTATTCTCGGACACATCAATTTATGCGCCTCCCGAAACTTTTGGCGCACT ATTCCACATTTCATTCCTATTACGGCGGGAAAGGGGGCACTCCTTGGTTCGCGTCGTGGCGGGAA TAAGGAAGAAAGAAGAAGAAAAATAGAAGAAAAAGAAGTGCGAAA Found at i:11571910 original size:11 final size:10 Alignment explanation
Indices: 11571885--11571918 Score: 45 Period size: 10 Copynumber: 3.4 Consensus size: 10 11571875 CGGGAATAAG * 11571885 GAAGAAAGAA 1 GAAGAAAAAA 11571895 GAAGAAAAATA 1 GAAGAAAAA-A 11571906 GAAG-AAAAA 1 GAAGAAAAAA 11571915 GAAG 1 GAAG 11571919 TGCGAAACGA Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 9 5 0.23 10 12 0.55 11 5 0.23 ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03 Consensus pattern (10 bp): GAAGAAAAAA Left flanking sequence: Indices 11571385 -- 11571884 GATTTTCTGAATCTCGAGTTTAAATTTATAAAGTTAAAAAGAAATTTCAACTTATTTTTTGAATG TCCACGAAAATTAATTAATTTTTTCAATTTTGTTTTCATTCACGGAATCTTCCATACAATTCGTC CAGAAAACGGCCGAATGCTGAAAGAATTCATCATCAAATTTCAATGATGTTTTCTTATTCGACAT CTAGTGAAAGCATTTACCAGATGCTCAAAGCGCAATTGCTCCTTCAATCATGAAATCGTAGTCTC TCAGAAACTCGGCGAAACTTTTCTTTTCTTCAATCCTACTACTTCTTTTTGTAGTATCCCAAAGA AGAGCGAGCGTTGGATTGTGTTCCGTAGAAGCGAGTGATGGGTCATGGGGCCGCGCGTATTCTCG GACACATCAATTTATGCGCCTCCCGAAACTTTTGGCGCACTATTCCACATTTCATTCCTATTACG GCGGGAAAGGGGGCACTCCTTGGTTCGCGTCGTGGCGGGAATAAG Right flanking sequence: Indices 11571919 -- 11572418 TGCGAAACGAAAAAGCATGGCGGCGACCCCCAGGCCTTCTTCTCTCTTCTTCTATTTTTCTTGTT CTTCGCCTCCTTCGTCTTCTTTTTCTTTTCCTTCTCCTCGTTCTCTTTCGATTTTTGTGGTCCCT ATATGCTTTACTTTTGTGGTCATCATGCTGTCCGACCGGTTCATAACGGCATCTCTGTTCCTGAA AAGTTCGATTTTGTCTGTTTAAACCAATAAATCTTACCCAAGCTAGATATTAATTTAACTTTCAC GAACTTCATGTGAAGACTTGTTGTGACTTCCTCTTTTTTATAACTTTGTTATAAAACACGTTTTC CAAAAAAAAAACTACTTGTTTGAGCAAAGACACCTTGTTTAGATGCTAAATGTAGTTAATACAAA TTAAAGATGCAAAGAAATTTATAAGCAATCATTTTTCATTAAAAACTTGACATATTGAATGTCTG TTTTATCTATCATTTCTTGATGAATAGTTCGTTTTGTTCAATAAA Found at i:11572679 original size:8 final size:8 Alignment explanation
Indices: 11572662--11572679 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11572652 CGACCTTCCG 11572662 TCGTTACA 1 TCGTTACA * 11572670 TCGTTTCA 1 TCGTTACA 11572678 TC 1 TC 11572680 CAGAGGACCG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.17, C:0.28, G:0.11, T:0.44 Consensus pattern (8 bp): TCGTTACA Left flanking sequence: Indices 11572162 -- 11572661 ATTAATTTAACTTTCACGAACTTCATGTGAAGACTTGTTGTGACTTCCTCTTTTTTATAACTTTG TTATAAAACACGTTTTCCAAAAAAAAAACTACTTGTTTGAGCAAAGACACCTTGTTTAGATGCTA AATGTAGTTAATACAAATTAAAGATGCAAAGAAATTTATAAGCAATCATTTTTCATTAAAAACTT GACATATTGAATGTCTGTTTTATCTATCATTTCTTGATGAATAGTTCGTTTTGTTCAATAAATAT ATCAGTTTCAGATCAAAACGCGGCACAATACAGGAGTCGGTTAGCTGATCACTTTGCCATGTAAT GGCGCGGTTAGACTACGCATATGCAAGGTAAGAACACGGATTTAGAATCCACTTAGCATTGTTTT TGCTATCCTCCGGAAGTTAATTAGGAATAAGAAACAGAAAAATGTGATGTTTCACCGTTTGAAGA TAGAAATCGAAATCAAAGAAGCAATTGGCGTCGAACGACCTTCCG Right flanking sequence: Indices 11572680 -- 11573179 CAGAGGACCGGCGGGTTCCGGTTCGTCTCACATCACTTTGAATTTTTTTTCTTCGGTTTTCATTC GTTTTCATAGGCTCTGCTCAAGACGTACGCCCTTTTTTGTCTACCACGAATCTGATATGTTCTTG ATGTAGGTCTGAATGTCCTCGATTTACTTGCGTCGATATGGGCGGAGCCTGGAGCCATGGCGAGA GCAACAAAAACTCGGGTGGTTCACAAAATAGCAAGATTGGAACACGTGCAAAACGGCGAGCTCTC CCGTGGTGTGCTCGAAAGCTTCACTTCTTTTCTATCACGTTGAGTGCGAGTGTCTCAAACACAAG ATGCTTCGGAGGTGTCGTCGCATCGTTTTTGGCATGGGTACCCCTGTTTTCGAGCCAACAACGGC TTTTTGTCCCCTACATTTCGTTTCATTTTGATACAAAGCAACTTCACTCTTTATCTCACTCTTGA CGTTCAAAGTTGGCCTAAAATTTTTGCAGTTTTTCGGAGCAAATA Found at i:11573299 original size:10 final size:10 Alignment explanation
Indices: 11573280--11573299 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11573270 CAGATGTTAA 11573280 TTTGTTCTTT 1 TTTGTTCTTT * 11573290 TTTTTTCTTT 1 TTTGTTCTTT 11573300 GCCAATTCAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85 Consensus pattern (10 bp): TTTGTTCTTT Left flanking sequence: Indices 11572780 -- 11573279 TTTGTCTACCACGAATCTGATATGTTCTTGATGTAGGTCTGAATGTCCTCGATTTACTTGCGTCG ATATGGGCGGAGCCTGGAGCCATGGCGAGAGCAACAAAAACTCGGGTGGTTCACAAAATAGCAAG ATTGGAACACGTGCAAAACGGCGAGCTCTCCCGTGGTGTGCTCGAAAGCTTCACTTCTTTTCTAT CACGTTGAGTGCGAGTGTCTCAAACACAAGATGCTTCGGAGGTGTCGTCGCATCGTTTTTGGCAT GGGTACCCCTGTTTTCGAGCCAACAACGGCTTTTTGTCCCCTACATTTCGTTTCATTTTGATACA AAGCAACTTCACTCTTTATCTCACTCTTGACGTTCAAAGTTGGCCTAAAATTTTTGCAGTTTTTC GGAGCAAATATCTATAGAAGATATACTTTTAGCATGTAGAAATAGGTTCAGTCTCTTGTTTTCAA GATTGCAGCAAATTTTGATAGCCTCTTCAATGTTTCAGATGTTAA Right flanking sequence: Indices 11573300 -- 11573799 GCCAATTCATTGTCTTTTTATCAAATTTAACGGGTATCTGTTTCACATCGCTGATCAAAACAGTT TTTCAACGATTTTAAAAAAAAATCAAATACATGTAAGAACATTCACTCTCGGCTTATTTTTTCTT TAAAATGTTTAAGAAAATTTACTGGGTTATTAGTTTTCGTCGAGACAGGGAAAACATGTGAAACC TCTGTTACATGATATATTGAGCGTTGTTTTTAAAGTTAGTGTTGTACTTGACAAGGTACAAAGCA TGTCACTGCGAAGGATGATATGATTGGACATGTCAAACTTCATGTTGTTTTTGCACAGATGTTTT TTGCTGTAGCAGTTGGCATAGTTTAAAACAACGAACTATTTCAGCATTTTAAAAATTAAGATGAC ATCAATTATTTAACTACTCATTTTTCCGGCCAGGGTTTTGACTGTAAAAAAAAAGAGAAATAGCT GAATTCCGTGCACTTTTACGTAATTTGAATTGAAAAAATATTGTA Found at i:11576714 original size:7 final size:7 Alignment explanation
Indices: 11576692--11576714 Score: 30 Period size: 7 Copynumber: 3.1 Consensus size: 7 11576682 TCTCCCGGCA * 11576692 TCTCATT 1 TCTCACT 11576699 TCTCAACT 1 TCTC-ACT 11576707 TCTCACT 1 TCTCACT 11576714 T 1 T 11576715 TTTGTGAATA Statistics Matches: 14, Mismatches: 1, Indels: 2 0.82 0.06 0.12 Matches are distributed among these distances: 7 8 0.57 8 6 0.43 ACGTcount: A:0.17, C:0.35, G:0.00, T:0.48 Consensus pattern (7 bp): TCTCACT Left flanking sequence: Indices 11576192 -- 11576691 GTGGGGTGGGTGCACCCCCACCCCCCGGTATGAACTCATCAAAACGGGGCCGATTGGTGTGCATC AAAGTTCGTATGCTTGATGATACTGTAGCGGTGTTTCATCTTGGGGTAATTTGTTTTTTTTTCTG CGTTGTCAGTTTTCATGGAACATATGTTTTCTTATTACAGCACAAAGCAATAGGCCAAACGTTGT TGGATGAAGTGTGCCGACATTTGAATCTATTGGAATGCGACTATTTTGGGTTGTCGTTCATCGAT ATTAATGGAAATCATGTAAGTTTTTCAAAATTATAATTTTCATAATTTTTATGGCTCAAATAGTT CATATATTTTAGTGTTGGCTTGATCGTGAGAAAACAATATTACGGCAAATCACAAACGGGTCTAC TGACGCCAAATTTTATTTCGTCGTCAAATTTTACACGCCGAATCCAATCGACTTGGAAGAGGAAT ACACCAGGTGAGCAACTTCTCGCACTTGTCAGTCTTCTCCCGGCA Right flanking sequence: Indices 11576715 -- 11577214 TTTGTGAATATTGCCCCGCATTTTTCAAAAGCACGTCACATATAGTGAAATGACAAATGACAAAT GCAAATTCGTAAGAGTCGGGTGTGGCTTCTGGGGGAGAAGAGCTTCCCCCGACGTGTGCATGTGT GTATGTCACGGACGGCAGAGACGAGAGGAGCTACTCCCCGAACAAAAAATTGCGACGAGCAGAAG TGGGGGGGGGGGGGGGAGATGGAGATGGGAAAGCAATGGTGGTGGCGGCGGCGGCATAGAACTAG GGGGGACCCGGTTGAAAAATGACAGCTGACATGTATTCGACTTGGGTTGAAAACCGGCAATGACC AATTTCAAGTAGTTTTGAGTAGAAATTTAGCAGATTGGGAAGTTATATTCCAACAGTACGGTGGT TTTGAAAACAAAATAGTAATTTAATCAGATGCACATAATCTTTCATGTTTGCAAAATAATGAGAA ACAAACCTTTCGTAGCAGCATTGAACAAAAACTTCGACGACGCTT Found at i:11576774 original size:7 final size:7 Alignment explanation
Indices: 11576762--11576785 Score: 41 Period size: 7 Copynumber: 3.6 Consensus size: 7 11576752 ACATATAGTG 11576762 AAATGAC 1 AAATGAC 11576769 AAATGAC 1 AAATGAC 11576776 AAATG-C 1 AAATGAC 11576782 AAAT 1 AAAT 11576786 TCGTAAGAGT Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 6 5 0.29 7 12 0.71 ACGTcount: A:0.58, C:0.12, G:0.12, T:0.17 Consensus pattern (7 bp): AAATGAC Left flanking sequence: Indices 11576262 -- 11576761 TCGTATGCTTGATGATACTGTAGCGGTGTTTCATCTTGGGGTAATTTGTTTTTTTTTCTGCGTTG TCAGTTTTCATGGAACATATGTTTTCTTATTACAGCACAAAGCAATAGGCCAAACGTTGTTGGAT GAAGTGTGCCGACATTTGAATCTATTGGAATGCGACTATTTTGGGTTGTCGTTCATCGATATTAA TGGAAATCATGTAAGTTTTTCAAAATTATAATTTTCATAATTTTTATGGCTCAAATAGTTCATAT ATTTTAGTGTTGGCTTGATCGTGAGAAAACAATATTACGGCAAATCACAAACGGGTCTACTGACG CCAAATTTTATTTCGTCGTCAAATTTTACACGCCGAATCCAATCGACTTGGAAGAGGAATACACC AGGTGAGCAACTTCTCGCACTTGTCAGTCTTCTCCCGGCATCTCATTTCTCAACTTCTCACTTTT TGTGAATATTGCCCCGCATTTTTCAAAAGCACGTCACATATAGTG Right flanking sequence: Indices 11576786 -- 11577285 TCGTAAGAGTCGGGTGTGGCTTCTGGGGGAGAAGAGCTTCCCCCGACGTGTGCATGTGTGTATGT CACGGACGGCAGAGACGAGAGGAGCTACTCCCCGAACAAAAAATTGCGACGAGCAGAAGTGGGGG GGGGGGGGGGAGATGGAGATGGGAAAGCAATGGTGGTGGCGGCGGCGGCATAGAACTAGGGGGGA CCCGGTTGAAAAATGACAGCTGACATGTATTCGACTTGGGTTGAAAACCGGCAATGACCAATTTC AAGTAGTTTTGAGTAGAAATTTAGCAGATTGGGAAGTTATATTCCAACAGTACGGTGGTTTTGAA AACAAAATAGTAATTTAATCAGATGCACATAATCTTTCATGTTTGCAAAATAATGAGAAACAAAC CTTTCGTAGCAGCATTGAACAAAAACTTCGACGACGCTTTTCGAAGTTCCATGACTGTTCTGATG CTCCAATATTTCTTTCAAAATATAATTTGTGCAACGTTTATTTAA Found at i:11576850 original size:8 final size:8 Alignment explanation
Indices: 11576833--11576850 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11576823 TTCCCCCGAC 11576833 GTGTGCAT 1 GTGTGCAT * 11576841 GTGTGTAT 1 GTGTGCAT 11576849 GT 1 GT 11576851 CACGGACGGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.11, C:0.06, G:0.39, T:0.44 Consensus pattern (8 bp): GTGTGCAT Left flanking sequence: Indices 11576333 -- 11576832 TTCATGGAACATATGTTTTCTTATTACAGCACAAAGCAATAGGCCAAACGTTGTTGGATGAAGTG TGCCGACATTTGAATCTATTGGAATGCGACTATTTTGGGTTGTCGTTCATCGATATTAATGGAAA TCATGTAAGTTTTTCAAAATTATAATTTTCATAATTTTTATGGCTCAAATAGTTCATATATTTTA GTGTTGGCTTGATCGTGAGAAAACAATATTACGGCAAATCACAAACGGGTCTACTGACGCCAAAT TTTATTTCGTCGTCAAATTTTACACGCCGAATCCAATCGACTTGGAAGAGGAATACACCAGGTGA GCAACTTCTCGCACTTGTCAGTCTTCTCCCGGCATCTCATTTCTCAACTTCTCACTTTTTGTGAA TATTGCCCCGCATTTTTCAAAAGCACGTCACATATAGTGAAATGACAAATGACAAATGCAAATTC GTAAGAGTCGGGTGTGGCTTCTGGGGGAGAAGAGCTTCCCCCGAC Right flanking sequence: Indices 11576851 -- 11577350 CACGGACGGCAGAGACGAGAGGAGCTACTCCCCGAACAAAAAATTGCGACGAGCAGAAGTGGGGG GGGGGGGGGGAGATGGAGATGGGAAAGCAATGGTGGTGGCGGCGGCGGCATAGAACTAGGGGGGA CCCGGTTGAAAAATGACAGCTGACATGTATTCGACTTGGGTTGAAAACCGGCAATGACCAATTTC AAGTAGTTTTGAGTAGAAATTTAGCAGATTGGGAAGTTATATTCCAACAGTACGGTGGTTTTGAA AACAAAATAGTAATTTAATCAGATGCACATAATCTTTCATGTTTGCAAAATAATGAGAAACAAAC CTTTCGTAGCAGCATTGAACAAAAACTTCGACGACGCTTTTCGAAGTTCCATGACTGTTCTGATG CTCCAATATTTCTTTCAAAATATAATTTGTGCAACGTTTATTTAAATATATTTAAACGCAGTATA GATTTACCATTTTTGAATTATACCTTTTTTCTATTCTTAAATCCC Found at i:11579431 original size:9 final size:9 Alignment explanation
Indices: 11579411--11579431 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 11579401 ACCTGCAGCT * 11579411 ACAACTACA 1 ACAACGACA * 11579420 ACAACGAGA 1 ACAACGACA 11579429 ACA 1 ACA 11579432 TATGCAAACA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.57, C:0.29, G:0.10, T:0.05 Consensus pattern (9 bp): ACAACGACA Left flanking sequence: Indices 11578911 -- 11579410 TTTCTTCTACCTCCTCCAAAGAGCAGCCCGATTTGTCGGTTTCTCTTCCTAATGTTCTTAGTGAT GATTTACAAATGGTGTGTAAGGAAATTGAAATTGAGCAAAATGATCCCCCTAAGTCAGTTTCTGG TGATAATTTTCAACAAAGAAGATCAAGCCGCGACTATGATAATGTTAGTGAAGATTCATATCGAC TTTCCGATCATGAGAGAAGTACGAGATCCGAAGTTGGAGTGGGCTCCAAGTTCGCAGCCGCAACT ATTTTCAATTCAACATTTGTTGCAAGAAAACCAGGTAGCAATGTCGTGAAAAGAGTTGTTGCTCA TACCAAAAGTACTCCAAACTCAACGGATGATGAGGAAGGAGCACTGAAGTCTGCGTCCGAATATC AAACTTTCCGTCATATCAAAGAATACCCATTTGCACGAAATGCGAACATAGTTCCAATTGAAATA GATGGACCAAATGTTGATTTATCTGCACGAAGATCACCTGCAGCT Right flanking sequence: Indices 11579432 -- 11579931 TATGCAAACACGACAACTACGGTAACGACAACTTCAAAGGTTCTTACAAGTTCTGGAGCAGTTTT GATGAAGCCGAAAGTTATATCTAATGATCATGAACCGTCATCTGGAACTCATTCATCGAGAGTTT CGCCCGAATCAGGAACTTATGGCGCACTTGGCCCTCTTCCCGGTAGAGTTATCACAAAAGAAAAC ATGATGATAACTCCGGAAGGATTCAAGGAAAAGAAAGCGAAACCTAATCCACCTCCGAAACCATC GTTTCCAGTGCAAGCTGTTCATTCAGAAACCGAAGTTGTTCGAGAAATCAAAACAGAACGAGCTT CGAGTCATCCGCTTGTTCACATGCAAGAGGAAATTCCATTTTCTCGAGCTCCATTGAAATTCGAG GATAAGAAAGAACGAAAATCCTCTCTGTCTCGCCCTGCACTAATTTCTGTTCAAAGTGAAGACAA TCCGGATGTTCAAAAATGTCATCTGTTCAACAGTGACATTCCGTA Found at i:11582197 original size:8 final size:8 Alignment explanation
Indices: 11582181--11582198 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11582171 ACAAGAAAGG * 11582181 TTAGTGAT 1 TTAGAGAT 11582189 TTAGAGAT 1 TTAGAGAT 11582197 TT 1 TT 11582199 CTAATGTATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.28, C:0.00, G:0.22, T:0.50 Consensus pattern (8 bp): TTAGAGAT Left flanking sequence: Indices 11581681 -- 11582180 CTGATTCAGTTTCAGAGTTTGGAAACATTTCAGATATCCAGGAGCCTTTATACCAATCAGTCAAC AAAAAGAAAGATGTCATCGTTGGGATCAATTCTACATTTTCCTCAGAAACTATTTGCACATCAGA ACCCATTTTGAAAGTGAACAAGTAACCACATTAGCATAAAACAGTCTTTCATTTTCAAACAATTT CAGAAAACCACGAAAACGAATGTCCAGAAGCGCAAATGACACATCAGAACTGAATAAATACAACT CCAGTGACAGTGGAGGATTGTCAATTGGAGATCCAACTGCTGGATCAAATGACTCACTGAGACTC ATGAAAAGAGACCACTCATCTGATTACCAGCTGAGACACGATTATGCAGTTATGAGGACCTCCCA AAGCACGGCCAGTGTTGGTACTCCATCAAAAGAAATTGAAATGAGTCTTGAGAATGATGTCGACA ACTATCCACCTAGTTGTAGCAGCGAGTATTATATTACAAGAAAGG Right flanking sequence: Indices 11582199 -- 11582698 CTAATGTATATTTTTCCACTGTATGCTGATTGATTAATTATGAGATTATTATTTAAATACAGTCG TGACGTCATGATGTGTACTTATATACATTATTTAAAATTACTTGAATAGTCCCATTACAAAGCAT TATGATAGAAAACCGAACTTCAATTGTGTTTTGAAAACTTAAAAATGGAGTACGGTCAGTGGGTA TTTCCTTTAGTTTTTTATGTTTTAATTAGGTTTCATATTTCAACATCGTAGGAGTTTGAACATGT GGCAGTGCTTCTGATTTCTCGAAAAGTGGTTCAAACTCGTTTTTAACCGCTTTTGACTCCAAATA TATATGTTTTTTTTATTGTTAAAATGATATTTAGTCATTTTAAAATCATTATAGTGTGTTTTAGT CATTTCCCCACTATCCGTTTTCAAGTCGTATGCGAAAAATTTCAACCGAGATTAGAAAAAAATAC ATTTGATTTTTATTTAAAAAAAATATTTGATTCAGGATTTCGGTA Found at i:11583959 original size:10 final size:10 Alignment explanation
Indices: 11583940--11583959 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11583930 TAAAACATGC * 11583940 TTTTAATTTT 1 TTTCAATTTT 11583950 TTTCAATTTT 1 TTTCAATTTT 11583960 AGTGACAAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75 Consensus pattern (10 bp): TTTCAATTTT Left flanking sequence: Indices 11583440 -- 11583939 GTTCTACAAGTTGAAAGGGATACGGGACTAGTTGGAATACTTACTCATCCAAACAGAAAAATTTT GCGTGTGGGATTTGTGCTCCGATCTGCCAGACGTGCACCATGCTGTAGGATAATGGTGCTTTGTT CCGACAGGATATTATTTGGGCACCGAGGTGTGAACTTGGACGGAAACTTTTTCACTGTTCATGCT GAATTCAAATTGAAAGGGATGATGGTATGGAATTTTAGTTAGGGAACTTCTAAAAATTTTTAATT TAAGATTGATGAAGGTGATACATACAAAGTGATGGACGGCGAAAATAATGTAATCACTCTCCACA ACGCAGATATCTCTATTGTTTTTGCTGCACCAGATCGTGCATCTTGGATTGAAGACATTACAGAA GCTATTAAAAATGCGGCTAGAGCAAAGATAGATCTACCTAGTTTGGTAATGGAGAAGAAAGAGGA AAATGATATTGATAGTAAGAAAACTGCTGTTACTTTAAAACATGC Right flanking sequence: Indices 11583960 -- 11584459 AGTGACAAAAGTGTTGCTACCAGAAGAATCTCCCGTGTCAAAAATGAGCCCATTGCAAATTTGCT GGTATCGAAAATGCTCGTTTGGAAGAAAAGATGTCAATAAAATGATAACAAATACCATGTGTGGA TATTTGAAGCGGAAACTGCGCAATTCATCCGGGTGGCAGGATTTATGGGTGGTCATGTGTTGTCA CACACTGTACTTTTATAGAAATCATAACGTGAGTTCACGAAAAATAAAGAAAACAGTCAGTCACA GGTTGAGAACTGCCAAATTTCGGAAAAAAAAACGGTATTTTTGAAAAATATAGGAGATTAAATCA AACCTCTGCAATATCCAAATACAAATAGTTGGAACATTATAAGAATCTAAAATTTGTAGAAAAAT ATTATGTTGTTTTGTCTGCAAACAAATCAAATTCAATTATTTTTCAACATTAAGTAGTTTTCAAA ATGGTACCCTTAGGCGGTACTCTCTCTATCTTTAAGAAAGATTTG Found at i:11588054 original size:8 final size:8 Alignment explanation
Indices: 11588038--11588055 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11588028 AATTGACAAG * 11588038 AATCCGTA 1 AATCAGTA 11588046 AATCAGTA 1 AATCAGTA 11588054 AA 1 AA 11588056 ATTTTTAGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22 Consensus pattern (8 bp): AATCAGTA Left flanking sequence: Indices 11587538 -- 11588037 ATGAAGTTTACAACAAGGTATTATTGAGATGATTCACGAAAACGAGCATGAGAGTTTTTAGATCC ACCGAAGAAATTTTCTCAGTTTTCATTGCTCTGGCTCTTATCATAAAAGCAATTATGGCAATTGT TCACGGTAATATCAAAACTTTCTTGCAGTAAAAAACCTGTACAAATTGTTTTTGAATAATAACAA AACACATAAATTCTCAGTATTCATTCATGTTTTGCGGCTAGTACCATCAAACGCTAGACTGTCCT AGAAAAACCTTGTTCTATAAATTGTTTTGAAAAATAAATATAGTAACATCCTAAGCTCTACAATT TCTGTTTAGTTTACACTCATGGATATCTTGGATGCATTAATAATGTTGCTGGTGATCTTTGCGAC CCTGCCGAACCACTTCTTTTTATCTTCCTTCTGTTTGGAACTACTTGGCTCAGTATGACAATTAT TTCATTCAGAAGTTCCCCATATCTTTCAAGGTACTAATTGACAAG Right flanking sequence: Indices 11588056 -- 11588555 ATTTTTAGATGGAAACGCGACTTAGTATCTGATTATGCTTTGCCAATTGCCGTTCTCGTTTTTTC ATTTATTTCGTTTTTTGGTTTTAGTGATGTCAAGAGTAAGAGAAAATTTGAGGTTGAAAATTCAT ACTTTGATCTTATTTCAGAAGAACAATTCCAAATTTTCTCACGGGAAACCGATGCATTCTTTGTT CCTTTCTTCAATTTACCCGCTGAAGCTCAACTACCAGCAGTTGGTCTTGCCATTCCATTGTCTAT TCTCTTTTTTATGGATCAACTTCTTGTTACCAATACTGTTGACAACAAAGACAATAAGTGAGTGG AGATTTATAGCTATGTCTGTCTTCCATCACATTCTTCCAGGCTGAAAAAGGGTTCTGCACATCAT TGGGATCTGCTTGTTGTTGGAGTTTTAAATATTGGATTATCAATTTTCGGATTACCATGGATGCA CGGAGCCCTACCATCAGCATATCTACATTTGAAGGCACTGAGTGA Found at i:11589958 original size:9 final size:9 Alignment explanation
Indices: 11589944--11589961 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11589934 AGTCTAATTT 11589944 TAAAGTATA 1 TAAAGTATA 11589953 TAAAGTATA 1 TAAAGTATA 11589962 GTCATACAGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33 Consensus pattern (9 bp): TAAAGTATA Left flanking sequence: Indices 11589444 -- 11589943 TGTTATCGCAGCTTTCATTCCATTCAGGTACACCTTTTTCATAATTACAACTTCGACTCGAACAT TTTCAGACACTTCTTCCTTCCGTTGTTCATCCGAAAGCAATATTTAGAAGCAATTGATGGACAGC ATTGAACATGCCCACCCTATTTTTACAAAACATATAATTCACATTTTTTATAAAGCGTCTTTTGA ACATTATTATTGTAATATCATATGCGTAATCAAAACAGTCTTTGGTAAAATTCGCCAATTGCATT AGTCATTGCACCAGAAACGACAAGTCATGTCTAGTCATGACCCAGCTCCAAACAAAAAAAATTGC AATAAAATTGCGGAAAATGTTAGAACAATCACAAACGAGTAATACATTAATGACAATCAATCGAT ATTACATTAAAATAATAGTATTGGCAGAATCTTTGAACAGATGCAGTAGGAGAGAGGATCGTGTC TAGCGAACATTTAGTTTAAGTTAACTAAGAGAAAAAGTCTAATTT Right flanking sequence: Indices 11589962 -- 11590461 GTCATACAGGACAAAACCGATAATTTTTGGGTTCAACATATGGCGAGAAGGAAAGAAAGAGGGAA AAGAATATAAAAATGATGCTGAGAATTCTGAGACTTTTTGTTTTAGTTAATAGGTTTGAGAGGTT TGGAACAAAAATAAAACAAAAAAGCGACGGACCCGCGAAAAGAGTCGAATATCATTCGGAATTTG AAATATGAAATTTGAGTTTGATTGTGTTTTCAATGATTTGATGAAAATAACAAGCTTCAGAGCGA CGTTACTTGCTCAACCTCTTCATCATCCTCGTAATCTTCTTCGAGGATAACCAGATCGTTGTCGG ACGCATAGATTTCTTCACTAGATTCGCGAGCCAGCTTGCCTTCCTCGTGGTATCCTGTAAAACGA GAACATTATACCTAGTTATTTGTCAAATTTAATTGATTGAACTAAATTAAATGAACTATGATTGA CAACTTCACATTTCCCCTTGTTTTACTTACCGCTTTCTTCAGAGA Found at i:11590167 original size:7 final size:7 Alignment explanation
Indices: 11590151--11590171 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 11590141 TATCATTCGG 11590151 AATTTGA 1 AATTTGA * 11590158 AATATGA 1 AATTTGA 11590165 AATTTGA 1 AATTTGA 11590172 GTTTGATTGT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38 Consensus pattern (7 bp): AATTTGA Left flanking sequence: Indices 11589651 -- 11590150 TAATATCATATGCGTAATCAAAACAGTCTTTGGTAAAATTCGCCAATTGCATTAGTCATTGCACC AGAAACGACAAGTCATGTCTAGTCATGACCCAGCTCCAAACAAAAAAAATTGCAATAAAATTGCG GAAAATGTTAGAACAATCACAAACGAGTAATACATTAATGACAATCAATCGATATTACATTAAAA TAATAGTATTGGCAGAATCTTTGAACAGATGCAGTAGGAGAGAGGATCGTGTCTAGCGAACATTT AGTTTAAGTTAACTAAGAGAAAAAGTCTAATTTTAAAGTATATAAAGTATAGTCATACAGGACAA AACCGATAATTTTTGGGTTCAACATATGGCGAGAAGGAAAGAAAGAGGGAAAAGAATATAAAAAT GATGCTGAGAATTCTGAGACTTTTTGTTTTAGTTAATAGGTTTGAGAGGTTTGGAACAAAAATAA AACAAAAAAGCGACGGACCCGCGAAAAGAGTCGAATATCATTCGG Right flanking sequence: Indices 11590172 -- 11590671 GTTTGATTGTGTTTTCAATGATTTGATGAAAATAACAAGCTTCAGAGCGACGTTACTTGCTCAAC CTCTTCATCATCCTCGTAATCTTCTTCGAGGATAACCAGATCGTTGTCGGACGCATAGATTTCTT CACTAGATTCGCGAGCCAGCTTGCCTTCCTCGTGGTATCCTGTAAAACGAGAACATTATACCTAG TTATTTGTCAAATTTAATTGATTGAACTAAATTAAATGAACTATGATTGACAACTTCACATTTCC CCTTGTTTTACTTACCGCTTTCTTCAGAGAGGCTGTCTGGATCCGTCACAGGGAGCCGCAGAGTT GTCCTGTCATCATCGGAGCACACAGAACTTGCACCGGTAGTCGATGAACTGCTTGGTCCGGCATC AGACTTGTAAGTGTCACTAACTGGGAACGATGAGTTGGAGTCGACATCTGGAGCAGCACGGTAGC ACACTGACTCATTGTCGTCAGAACCAAATTGCTCTTCATCTTCCT Found at i:11591061 original size:7 final size:7 Alignment explanation
Indices: 11591049--11591063 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11591039 GGTGATACAA 11591049 AATAAAT 1 AATAAAT 11591056 AATAAAT 1 AATAAAT 11591063 A 1 A 11591064 TCGAATTTGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27 Consensus pattern (7 bp): AATAAAT Left flanking sequence: Indices 11590549 -- 11591048 TTGGTCCGGCATCAGACTTGTAAGTGTCACTAACTGGGAACGATGAGTTGGAGTCGACATCTGGA GCAGCACGGTAGCACACTGACTCATTGTCGTCAGAACCAAATTGCTCTTCATCTTCCTGAGAAAA ACAACATAGTATTTTGTAATAGCAAAAGGTTTTTTATCTTTAAATTCAAAGAAGCAAACGCAATT CTACATTTCCAACACTCACTTCTTGTTCTTCGTCAATACTGCCCAGACGAGGCGCTGACTTTGAT CGGCTAACAGGCGGACGGAAATTGAGGGTTCCAGTCTGCAAAATGAGCTTGCGACGAGGACACCC GGCTGATCCGGTGAGACGAGCATTCTGAGCAGAGAGTTTCTCACGCTTGTACTCCTGAAGTGCAG CATGCAAGAAGTTCTGAAGACGCGTGTTGATAATTCCCGGTTCGGCACTCTTCTTGCACAAAACC GCATGACACCGAAGTTCCGGTTTCAGTCTAAAAACGGTGATACAA Right flanking sequence: Indices 11591064 -- 11591563 TCGAATTTGTTAATCTGTACCTTTTTCCGTCGTGCTTGTAAATCCAGCAGAAAACTTTTGGATAT TCAGGAGGAGCCGAACTAAATGTGATTCTGTGTGCCCAGTATTCCGTCAGCCCTTGTTGTTTTGT CTCAGCTTTCAATCCCGATCTTGTAATCTGTAATACAAGAATTTCGATAAAACTGCTTAAGCTAA CTTTTCTGACCTCCAAGTTCATTCCCAAATCACTTCTGGCACGCGAGCAGTACGCTTTCCAAATC AACGACAACGGTTTTTCATAGCAATTCTCACCACGTGCCATGATTGTTAATACGTTACCCAGATA GATGACATTGTACGATTCTTCAGGGGGATTGATCGTGTACCTAAAAAGAACGCGTTTTTTTCATG TCAATTTTTTGAAGACTGTCTACTGTAAAAAACAGCTATCAGACTGAGGCAAACAAAAAAAAAGA AATCTAGAAAATCGTGGTAGTGATATGATTAATTATCACTTACCT Found at i:11592386 original size:7 final size:7 Alignment explanation
Indices: 11592371--11592386 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11592361 AACGGGGAGT * 11592371 AAAATGA 1 AAAAGGA 11592378 AAAAGGA 1 AAAAGGA 11592385 AA 1 AA 11592387 GGCGCGAACG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06 Consensus pattern (7 bp): AAAAGGA Left flanking sequence: Indices 11591871 -- 11592370 AATAGAAGACAGAAAGAATAACGGTGTTTGGAGTCTTGGGGCGAATGATGATGTTTTAGTGCCAA TATGGCAATATAGGTACAGATGGTGGTGAATGGGATCAAGATTGTATTAGGATTGGTTCTAGAAG TAGTACAATGCTAGAATAAAAGACGAGTGTATTGCATAGAACATAACTCTACTATTTTTTTTAAT TTTGTACCTTTTCGAACTGTATTAAATAATAAGATTTATGACAATATAATTAGATTAACATGACT TCTGGTTAGTCAATGAATACTATTATAAACCCATGCCCATTTGCTCAAAAGAAAAGCAAACAGCA AAAAAATCGTTCAAAAAAAGGCTGCAAAAAATAAATTGCAAGTACAACGCCTAGAACAAGGATGG GAACACAATCGTTTTGTTGACATACCGACTGGACCTGAAGGCAAGGAAGGAAGATTCGAGTGAGA AAATAACGAAGAAGAAGGCGCAATTGTTTGTTTAAAACGGGGAGT Right flanking sequence: Indices 11592387 -- 11592886 GGCGCGAACGAATATTAAACCAATCCGACAACTAAGACGAACCGTTAGACTCCCCGAAAAAGATT CCTTAAAATCTGTCTACTCGAAATTCAATTTCAACTTCTGAATGAAAAGGTTTAGAATTGAAAAA GAGGTGACGGGAATGAAAAAGAAAATCGGGATGAATATTCATTCACAGAAGACCGATGACATCAC TTGTATCGTCCATTTGATTTCCACCCGTTTTGCCTCTTAACCCCTCTATACTAATCGATTCACGT GAAAGTAGTCAGACATCTGTTATCCATTAACCCCAAAAGTTGTTCATTTTCCTCCATCTATTCAA CCATCACTTTTTCTCATCAATTCATCCCGCCACTAGTTGATTATTCGCATTCAAAAACTGACAAA TATGTATATCCGAATTGGATCGGTTGATATTTCCGGATGAAAAGGAGAAAAAAATTGGTATGAAG GAAAAAAAAGGGGGTGAGTGAGGGAAATAGAGAAGGGGAAGTGAT Found at i:11593497 original size:9 final size:9 Alignment explanation
Indices: 11593483--11593500 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11593473 AAAATTGATC 11593483 TAGGAGTAA 1 TAGGAGTAA 11593492 TAGGAGTAA 1 TAGGAGTAA 11593501 ACAGTTCCCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22 Consensus pattern (9 bp): TAGGAGTAA Left flanking sequence: Indices 11592983 -- 11593482 TGGCATCTGGCCCATATCGTAAATCTTTTTGTGTATACAAAGCCAATCTCGGCAACATTTGAAAA GAAAGCTTATAAAAACCACTGGTGGATATCCAACAGAAAAACAGTGAGGAGCGAACGGTTTGACA GTTTTCAATCGACCTGACACTTCTTTCGTTATCATTTTTTCAACAGAAGAAGCAAAAAAAAATGA AAGAAAGATCACAGTCTAGACATAAGGAAAACGACAGAAACATGATAAAGTACCGACGGAGAGAT GTAGATACTGTTCGAAAGGATGTATGACAATCTTGCTCACATGTTTTTTTCAAATTTCCGTGGGG GCGAAGAACTTGTGTTTGGTACGTAACAAGGCAAAAACATACGTTTTTTCAGAAGTGGGTTTTTG AGGTTAAGTTGTTGATAGAAAGATCAAGAGGATTCTTCAAATGTTGCGACTGTTTTAAAGTCTTG AACTTGTTGACTTTGAAAATCTAATTCTGAATCACAAAATTGATC Right flanking sequence: Indices 11593501 -- 11594000 ACAGTTCCCAGAAAATATATAGTAGTATTATTGAAAAATAGTCATAAGATTTTACAAACCTTGTG GATACAGATTTTTGATTTCTGGTTAACTTCTAATGTTAAAATGAAATTTTAAAAATGAAAAATAT CGTTTACCAGCAGATTCTAATACAAAAAATCGTAGTTAGTCAGAAACTCAAAAACTTGAATATCA TTCTTTTGTTATGAAGTTGAACTTTGGACAGGAAGAAGTTTAGCACTGACAATCCATTAAAAAGT TGTGCAAATACCGGAGAAAAATGTTGCAAGAAAGGGAACATTCGTATCTAAAAATAAATTGCATT GATGATATGTTTCCAAGATTAAATTGGTACAGGCTTACTTGATTTTCAAAATGATATCAAATTAC ATAGACAAGTGAAAGTAAATTGTTGAAACGGTAGTAACGTTTTCATATGGTTCAAGAGAAGGGCG GTCGAATATCTGTCAACTACAACGGACATACTTATGGAAACAAAA Found at i:11594185 original size:6 final size:7 Alignment explanation
Indices: 11594166--11594186 Score: 35 Period size: 7 Copynumber: 3.1 Consensus size: 7 11594156 ATGGAAAACC 11594166 GTTGTAT 1 GTTGTAT 11594173 GTTGTAT 1 GTTGTAT 11594180 -TTGTAT 1 GTTGTAT 11594186 G 1 G 11594187 GCGTGGAATC Statistics Matches: 13, Mismatches: 0, Indels: 2 0.87 0.00 0.13 Matches are distributed among these distances: 6 6 0.46 7 7 0.54 ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57 Consensus pattern (7 bp): GTTGTAT Left flanking sequence: Indices 11593666 -- 11594165 TTAGTCAGAAACTCAAAAACTTGAATATCATTCTTTTGTTATGAAGTTGAACTTTGGACAGGAAG AAGTTTAGCACTGACAATCCATTAAAAAGTTGTGCAAATACCGGAGAAAAATGTTGCAAGAAAGG GAACATTCGTATCTAAAAATAAATTGCATTGATGATATGTTTCCAAGATTAAATTGGTACAGGCT TACTTGATTTTCAAAATGATATCAAATTACATAGACAAGTGAAAGTAAATTGTTGAAACGGTAGT AACGTTTTCATATGGTTCAAGAGAAGGGCGGTCGAATATCTGTCAACTACAACGGACATACTTAT GGAAACAAAAAACAGAAAGACTGATGGATTGTTAAATTTTTGGCATTTTGTTTTGTTTTCTCTAT AGATTGGGTTTGCCGACTTTGAATAAAAAATATAGGAAAAAAGGATTCAGAAAAGGAAAAATCTC AGAAAAAATTGGGGAAACTGAAACAGCACCAGTAAATGGAAAACC Right flanking sequence: Indices 11594187 -- 11594686 GCGTGGAATCGAAAATGAAGTGTGATTGTAATTGCAATGAGGAGAAGAAGACCGTAACGTATACA TATATTGGTGGAGATCTTGTGAGGGAATAAGTGAATAGCTGTCGGTTCAAATTTGTTCTCTTTCA TCTTCATTCCATCTAATTCACATTTCACAGAGAATTGAAAAAAAAACGGACTGCGAAAAGTTGAA TCTCGTCGTGATTGAAATGAAAAAAAGTGGGAAGGAAGAAGTAAAATTTCGAAGAAGATTGAACA CTTTTTTCCTGTCACAACTCAAGATGGAGCTGTGAAATTTTAAATACCCACCAACGCAGAAGACG GCTTTATTTTTGACAGAGAAATAGCTTACACTTCCACTGGTGAATTTATGAACTAAAAATTAAAA AGTATTGAAAAAAATCCTGACGAAAGAATGACAATACAGCGAATTTTTATATGAAACCAGAGCCA ATTTACAATACATTGCAGAGCAAGGAGATCAAAATCGTAACGTTG Found at i:11594941 original size:7 final size:7 Alignment explanation
Indices: 11594929--11594942 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11594919 ATTTCACCAT 11594929 CAATTAA 1 CAATTAA 11594936 CAATTAA 1 CAATTAA 11594943 TGTACTATTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): CAATTAA Left flanking sequence: Indices 11594429 -- 11594928 TTCGAAGAAGATTGAACACTTTTTTCCTGTCACAACTCAAGATGGAGCTGTGAAATTTTAAATAC CCACCAACGCAGAAGACGGCTTTATTTTTGACAGAGAAATAGCTTACACTTCCACTGGTGAATTT ATGAACTAAAAATTAAAAAGTATTGAAAAAAATCCTGACGAAAGAATGACAATACAGCGAATTTT TATATGAAACCAGAGCCAATTTACAATACATTGCAGAGCAAGGAGATCAAAATCGTAACGTTGAA CGTACTAGTAGTGCGAGGATATGAATACAGTTTTATGTTGATCAAAATGTATGTTCTGAATTGAA ATATTGATGATTCACAACTTAAAGCGTCAATTCTGCAATAATAAGATATCTCACAAGCGTGACCA TGAAAAAAGAAAGCGTTAAAAACTTGCTCTTACTTGAAAAAAAAAACGACATTTCTCATGACTAT TACTTAAAGCACGGATACTCTAAAGATAAATTAAGATTTCACCAT Right flanking sequence: Indices 11594943 -- 11595442 TGTACTATTACAAAGAGCAAGTATACTATATAACAATAATAATAACACAAACCGTTTCTTCCTGC AGAAGAAAACTATGACTCAGAGACTATGCATCGTTCTCTCTATCTCTACACTGTCTACAATAATA AAGAAAATAAAATACTGAGAGAGCGAGAGGAGGAAAACATCAGTGGCGTTCTTTTGCAAACAGTC GGAAAACATTTGCATCAAGTTGATCTATCAATCGCATGGAACCAAGCATAACTAAAGGAATAGGA AACTGGGGATAAGGGAACGGGATGAAAAAAAACAAGGAAATGGTTGGAAATGCATGGAAACGGGC AGTCGTTAAAGGAAGACGATTGGTTGCGGATTCTCAGACGATGATGATACGTAGAACAGTGTTGA GCGTTGAACACAAAAACCGAGAAAATGAACTCTGATGAACAACGAAACAAGAAACAACTAGAATA CAGTAAGTCAAAAATTTATCAGCTTACGGAACAAGGGCTCTAATC Found at i:11595253 original size:10 final size:10 Alignment explanation
Indices: 11595238--11595262 Score: 36 Period size: 10 Copynumber: 2.5 Consensus size: 10 11595228 AAAAAAACAA ** 11595238 GGAAATGGTT 1 GGAAATGCAT 11595248 GGAAATGCAT 1 GGAAATGCAT 11595258 GGAAA 1 GGAAA 11595263 CGGGCAGTCG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.40, C:0.04, G:0.36, T:0.20 Consensus pattern (10 bp): GGAAATGCAT Left flanking sequence: Indices 11594738 -- 11595237 TATGTTCTGAATTGAAATATTGATGATTCACAACTTAAAGCGTCAATTCTGCAATAATAAGATAT CTCACAAGCGTGACCATGAAAAAAGAAAGCGTTAAAAACTTGCTCTTACTTGAAAAAAAAAACGA CATTTCTCATGACTATTACTTAAAGCACGGATACTCTAAAGATAAATTAAGATTTCACCATCAAT TAACAATTAATGTACTATTACAAAGAGCAAGTATACTATATAACAATAATAATAACACAAACCGT TTCTTCCTGCAGAAGAAAACTATGACTCAGAGACTATGCATCGTTCTCTCTATCTCTACACTGTC TACAATAATAAAGAAAATAAAATACTGAGAGAGCGAGAGGAGGAAAACATCAGTGGCGTTCTTTT GCAAACAGTCGGAAAACATTTGCATCAAGTTGATCTATCAATCGCATGGAACCAAGCATAACTAA AGGAATAGGAAACTGGGGATAAGGGAACGGGATGAAAAAAAACAA Right flanking sequence: Indices 11595263 -- 11595762 CGGGCAGTCGTTAAAGGAAGACGATTGGTTGCGGATTCTCAGACGATGATGATACGTAGAACAGT GTTGAGCGTTGAACACAAAAACCGAGAAAATGAACTCTGATGAACAACGAAACAAGAAACAACTA GAATACAGTAAGTCAAAAATTTATCAGCTTACGGAACAAGGGCTCTAATCTGTTGGCGTGGAAGA CAGAAAAGAAAACGAGCAAAATCGTGCGAGTCTAACTAGCGACGACGCAAACAGCCTTTCTAATG ATATCTAGTTCTTAGGTATACATATGTTAAACGGGCAAAAGAGACGAAGGATAGACAGTGCATGC AAAATTTCTTGTTGATAAATAATCAGTTGAAAAGCGATCTCATGGGCGAGTGGTGGTCAGCCGTG GGCGCTAGAGGATCTGTTTCTTAAGAAGCGCAAACAAAACACAAGTTCTTATGGATTCCTTTATT TTTGCAAGTAAGTCTAGAAAATAGCAATAAAGACATATAGCTGCA Found at i:11595388 original size:7 final size:8 Alignment explanation
Indices: 11595370--11595390 Score: 35 Period size: 7 Copynumber: 2.8 Consensus size: 8 11595360 AACTCTGATG 11595370 AACAACGA 1 AACAACGA 11595378 AACAA-GA 1 AACAACGA 11595385 AACAAC 1 AACAAC 11595391 TAGAATACAG Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 7 7 0.58 8 5 0.42 ACGTcount: A:0.67, C:0.24, G:0.10, T:0.00 Consensus pattern (8 bp): AACAACGA Left flanking sequence: Indices 11594870 -- 11595369 TTTCTCATGACTATTACTTAAAGCACGGATACTCTAAAGATAAATTAAGATTTCACCATCAATTA ACAATTAATGTACTATTACAAAGAGCAAGTATACTATATAACAATAATAATAACACAAACCGTTT CTTCCTGCAGAAGAAAACTATGACTCAGAGACTATGCATCGTTCTCTCTATCTCTACACTGTCTA CAATAATAAAGAAAATAAAATACTGAGAGAGCGAGAGGAGGAAAACATCAGTGGCGTTCTTTTGC AAACAGTCGGAAAACATTTGCATCAAGTTGATCTATCAATCGCATGGAACCAAGCATAACTAAAG GAATAGGAAACTGGGGATAAGGGAACGGGATGAAAAAAAACAAGGAAATGGTTGGAAATGCATGG AAACGGGCAGTCGTTAAAGGAAGACGATTGGTTGCGGATTCTCAGACGATGATGATACGTAGAAC AGTGTTGAGCGTTGAACACAAAAACCGAGAAAATGAACTCTGATG Right flanking sequence: Indices 11595391 -- 11595890 TAGAATACAGTAAGTCAAAAATTTATCAGCTTACGGAACAAGGGCTCTAATCTGTTGGCGTGGAA GACAGAAAAGAAAACGAGCAAAATCGTGCGAGTCTAACTAGCGACGACGCAAACAGCCTTTCTAA TGATATCTAGTTCTTAGGTATACATATGTTAAACGGGCAAAAGAGACGAAGGATAGACAGTGCAT GCAAAATTTCTTGTTGATAAATAATCAGTTGAAAAGCGATCTCATGGGCGAGTGGTGGTCAGCCG TGGGCGCTAGAGGATCTGTTTCTTAAGAAGCGCAAACAAAACACAAGTTCTTATGGATTCCTTTA TTTTTGCAAGTAAGTCTAGAAAATAGCAATAAAGACATATAGCTGCAAACCATAACAAGACTAGT AAGTTCTCCAGACAAGTATTATCAAAAATAAGGCTAGTTTGCAAATCGAGAAGATGAGAAACCCA AAAACAACAATAGATTATTTTCAAAAAAAAACCCACCCAACGGTC Found at